S1 E1 S2 E2 Reference Contig IDY Ambiguous Best_group CONTIG scaffold3 401 unaligned 3231039 3233371 5067 2734 CM091752.1 scaffold6 99.66 True local misassembly 3228450 3230182 7966 6210 CM091752.1 scaffold6 96.21 True CONTIG scaffold6 7966 correct 265745 272519 6900 1 CM091753.1 scaffold8 98.14 True fake: scaffold gap size wrong estimation (local) 254867 265636 17797 7051 CM091753.1 scaffold8 99.05 True relocation, inconsistency = 153494 95117 101372 17798 24053 CM091753.1 scaffold8 99.84 True CONTIG scaffold8 24053 misassembled 4112624 4120783 1 8162 CM091768.1 scaffold4 99.98 True fake: scaffold gap size wrong estimation (local) 4120969 4123237 8922 11214 CM091768.1 scaffold4 98.69 True CONTIG scaffold4 11214 correct CONTIG scaffold7 410 unaligned CONTIG scaffold13 375 unaligned CONTIG scaffold1 5109 unaligned 4362250 4379231 17502 275 CM091754.1 scaffold10 98.58 True fake: scaffold gap size wrong estimation (local) 4352340 4362118 27991 18041 CM091754.1 scaffold10 99.62 True relocation, inconsistency = 419632 4787382 4883452 33623 129923 CM091754.1 scaffold10 99.72 True local misassembly 4882535 4914800 129924 162183 CM091754.1 scaffold10 99.97 True indel: indel (> 5bp) 4914931 4968544 162334 217034 CM091754.1 scaffold10 97.93 True indel: indel (> 5bp) 4968727 4972394 217226 220893 CM091754.1 scaffold10 100.0 True local misassembly 4967876 4968572 220894 221590 CM091754.1 scaffold10 99.91 True fake: scaffold gap size wrong estimation (local) 4972410 5003353 222389 253335 CM091754.1 scaffold10 99.96 True fake: scaffold gap size wrong estimation (local) 5003454 5019931 253678 270154 CM091754.1 scaffold10 99.98 True CONTIG scaffold10 270154 misassembled 16392213 16393777 1 1590 CM091752.1 scaffold16 97.04 True CONTIG scaffold16 1590 correct 3260094 3279468 20785 1035 CM091757.1 scaffold15 98.97 True indel: indel (<= 5bp) 3139855 3260051 144114 20830 CM091757.1 scaffold15 99.17 True indel: indel (<= 5bp) 3025657 3139788 260100 144186 CM091757.1 scaffold15 98.35 True fake: scaffold gap size wrong estimation (local) 2917168 3025516 371391 260570 CM091757.1 scaffold15 99.13 True local misassembly 2862525 2916842 427368 372167 CM091757.1 scaffold15 97.29 True indel: indel (> 5bp) 2856202 2862449 433700 427427 CM091757.1 scaffold15 99.03 True indel: indel (> 5bp) 2760530 2856167 530741 433754 CM091757.1 scaffold15 98.34 True indel: indel (> 5bp) 2729717 2760125 564412 531153 CM091757.1 scaffold15 97.07 True indel: indel (> 5bp) 2728694 2729391 565492 564795 CM091757.1 scaffold15 99.71 True indel: indel (<= 5bp) 2727138 2728424 567046 565760 CM091757.1 scaffold15 98.99 True local misassembly 2725271 2725832 568880 568319 CM091757.1 scaffold15 98.4 True indel: indel (<= 5bp) 2724606 2725270 569546 568882 CM091757.1 scaffold15 99.55 True indel: indel (> 5bp) 2723829 2724422 570335 569742 CM091757.1 scaffold15 99.83 True indel: indel (> 5bp) 2721846 2723565 572311 570592 CM091757.1 scaffold15 99.36 True local misassembly 2720632 2721201 573538 572969 CM091757.1 scaffold15 98.77 True indel: indel (<= 5bp) 2719575 2720630 574594 573539 CM091757.1 scaffold15 99.53 True indel: indel (<= 5bp) 2718164 2719417 576003 574750 CM091757.1 scaffold15 99.68 True indel: indel (<= 5bp) 2716272 2718162 577894 576004 CM091757.1 scaffold15 99.58 True indel: indel (<= 5bp) 2714741 2715858 579428 578311 CM091757.1 scaffold15 99.73 True indel: indel (<= 5bp) 2713839 2714739 580329 579429 CM091757.1 scaffold15 99.89 True local misassembly 2712087 2712850 582110 581347 CM091757.1 scaffold15 99.74 True local misassembly 2710451 2711532 583748 582667 CM091757.1 scaffold15 99.91 True indel: indel (<= 5bp) 2709790 2710450 584410 583750 CM091757.1 scaffold15 100.0 True indel: indel (> 5bp) 2709169 2709720 585021 584470 CM091757.1 scaffold15 99.46 True indel: stretch of mismatches 2708136 2708930 586054 585260 CM091757.1 scaffold15 99.75 True indel: indel (<= 5bp) 2706812 2708121 587382 586073 CM091757.1 scaffold15 99.01 True indel: indel (<= 5bp) 2704812 2706356 589385 587841 CM091757.1 scaffold15 99.22 True local misassembly 2535639 2704592 760554 590603 CM091757.1 scaffold15 99.16 True local misassembly 2445529 2535535 851795 761056 CM091757.1 scaffold15 98.9 True local misassembly 2393016 2446834 906411 851796 CM091757.1 scaffold15 98.76 True indel: indel (> 5bp) 2341036 2392982 957597 906439 CM091757.1 scaffold15 97.87 True local misassembly 2258677 2340840 1039874 957671 CM091757.1 scaffold15 99.22 True indel: indel (> 5bp) 2001299 2258622 1298609 1039938 CM091757.1 scaffold15 98.66 True indel: indel (> 5bp) 1994787 2001254 1305157 1298674 CM091757.1 scaffold15 99.06 True indel: indel (<= 5bp) 1964581 1994687 1335514 1305262 CM091757.1 scaffold15 98.89 True CONTIG scaffold15 1335514 correct 3095791 3097197 1407 1 CM091762.1 scaffold9 99.79 True unknown 3026014 3095562 72977 2184 CM091762.1 scaffold9 99.28 True unknown 3024123 3025972 75826 73977 CM091762.1 scaffold9 99.84 True unknown 3020818 3022053 79133 77898 CM091762.1 scaffold9 99.6 True unknown 3020024 3020817 79931 79138 CM091762.1 scaffold9 99.75 True unknown 3018844 3019770 81108 80182 CM091762.1 scaffold9 99.35 True unknown 3014266 3015158 82001 81109 CM091762.1 scaffold9 99.89 True unknown 3012019 3014254 84246 82011 CM091762.1 scaffold9 99.6 True unknown 3010560 3011888 85707 84379 CM091762.1 scaffold9 99.25 True unknown 3008761 3010187 87499 86073 CM091762.1 scaffold9 99.72 True unknown 2987241 2996192 308245 317764 CM091762.1 scaffold9 99.43 True unknown 2952440 2987139 379315 414324 CM091762.1 scaffold9 99.16 True unknown 62184 79722 481021 498562 CM091762.1 scaffold9 99.93 True unknown 2996293 3005281 581451 590437 CM091762.1 scaffold9 99.78 True unknown 8568 32324 617535 641295 CM091762.1 scaffold9 99.94 True unknown 41021 62083 649285 628224 CM091762.1 scaffold9 99.95 True unknown 2878463 2881076 659926 662560 CM091762.1 scaffold9 95.5 True unknown CONTIG scaffold9 667054 mis_unaligned 3167065 3169029 49 2014 CM091768.1 scaffold19 98.88 True indel: indel (<= 5bp) 3169104 3189819 2084 22957 CM091768.1 scaffold19 97.29 True local misassembly 3191130 3205369 24517 38598 CM091768.1 scaffold19 97.29 True fake: scaffold gap size wrong estimation (local) 3205736 3210345 39385 43987 CM091768.1 scaffold19 98.59 True local misassembly 3211364 3214874 44029 47535 CM091768.1 scaffold19 98.95 True local misassembly 3215862 3216881 48755 49767 CM091768.1 scaffold19 98.53 True local misassembly 3217002 3251093 50091 83934 CM091768.1 scaffold19 96.96 True local misassembly 3251131 3304210 84100 137155 CM091768.1 scaffold19 98.2 True local misassembly 3303404 3305492 137164 139263 CM091768.1 scaffold19 98.9 True fake: scaffold gap size wrong estimation (local) 3305972 3309582 141008 144646 CM091768.1 scaffold19 97.21 True local misassembly 3310059 3311676 144844 146434 CM091768.1 scaffold19 96.72 True fake: scaffold gap size wrong estimation (local) 3311813 3316035 147724 151947 CM091768.1 scaffold19 99.31 True CONTIG scaffold19 151947 correct 4186927 4195638 14042 4890 CM091754.1 scaffold20 95.15 True indel: indel (> 5bp) 4176301 4186891 25168 14110 CM091754.1 scaffold20 99.97 True fake: scaffold gap size wrong estimation (local) 4166658 4175910 36004 26734 CM091754.1 scaffold20 99.81 True fake: scaffold gap size wrong estimation (local) 4162432 4166505 40255 36168 CM091754.1 scaffold20 99.63 True local misassembly 4162218 4163363 41401 40256 CM091754.1 scaffold20 99.74 True indel: indel (> 5bp) 4161022 4162162 42606 41466 CM091754.1 scaffold20 100.0 True fake: scaffold gap size wrong estimation (local) 4030396 4160934 178683 45227 CM091754.1 scaffold20 99.23 True fake: not a misassembly (possible transposable element) 8672075 8672910 182481 181649 CM091767.1 scaffold20 99.37 True fake: not a misassembly (possible transposable element) 4024695 4028473 186287 182482 CM091754.1 scaffold20 99.07 True indel: indel (> 5bp) 3885659 4024353 325904 186609 CM091754.1 scaffold20 99.48 True indel: indel (> 5bp) 3843624 3885575 368796 325966 CM091754.1 scaffold20 97.89 True fake: scaffold gap size wrong estimation (local) 3750807 3843339 461470 369123 CM091754.1 scaffold20 98.99 True local misassembly 3746905 3750657 466194 462442 CM091754.1 scaffold20 99.73 True local misassembly 3720212 3748020 494163 466195 CM091754.1 scaffold20 99.82 True indel: indel (> 5bp) 3634418 3720180 581028 494243 CM091754.1 scaffold20 98.56 True indel: indel (> 5bp) 3611222 3634390 604701 581049 CM091754.1 scaffold20 97.13 True local misassembly 3606023 3610575 610160 605630 CM091754.1 scaffold20 98.88 True CONTIG scaffold20 610160 correct 15571246 15572331 1 1111 CM091757.1 scaffold21 97.57 True CONTIG scaffold21 1111 correct 9888614 9898728 10186 1 CM091765.1 scaffold22 99.41 True fake: scaffold gap size wrong estimation (local) 9877706 9887894 21216 10975 CM091765.1 scaffold22 99.48 True fake: scaffold gap size wrong estimation (local) 9875745 9877228 23282 21799 CM091765.1 scaffold22 100.0 True CONTIG scaffold22 23282 correct 330276 331282 91 1097 CM091761.1 scaffold23 99.6 True fake: scaffold gap size wrong estimation (local) 330869 335069 1747 5948 CM091761.1 scaffold23 99.71 True fake: scaffold gap size wrong estimation (local) 335267 336620 6707 8061 CM091761.1 scaffold23 99.63 True CONTIG scaffold23 8061 correct 10654078 10857660 1 208331 CM091759.1 scaffold12 99.49 True indel: indel (<= 5bp) 10857713 10871122 208385 221822 CM091759.1 scaffold12 99.77 True fake: scaffold gap size wrong estimation (local) 10871208 10882577 221918 233296 CM091759.1 scaffold12 99.63 True fake: scaffold gap size wrong estimation (local) 10882722 11092301 233948 447971 CM091759.1 scaffold12 99.16 True indel: indel (> 5bp) 11092354 11147104 448036 502829 CM091759.1 scaffold12 99.62 True fake: scaffold gap size wrong estimation (local) 11147248 11160814 503186 516771 CM091759.1 scaffold12 98.69 True indel: indel (> 5bp) 11160903 11198827 516850 555108 CM091759.1 scaffold12 98.95 True local misassembly 11198110 11209678 555134 566699 CM091759.1 scaffold12 99.74 True local misassembly 11209827 11222991 567107 580321 CM091759.1 scaffold12 98.45 True fake: scaffold gap size wrong estimation (local) 11223306 11233442 581220 591320 CM091759.1 scaffold12 99.46 True indel: indel (> 5bp) 11233588 11255763 591519 613721 CM091759.1 scaffold12 99.55 True local misassembly 11256656 11387397 614536 746981 CM091759.1 scaffold12 99.48 True indel: indel (> 5bp) 11387697 11428207 747274 788591 CM091759.1 scaffold12 99.52 True local misassembly 11428371 11611821 788669 974179 CM091759.1 scaffold12 98.43 True local misassembly 11609568 11697022 974180 1062493 CM091759.1 scaffold12 99.27 True local misassembly 11696509 12070042 1062523 1440161 CM091759.1 scaffold12 99.18 True local misassembly 12070106 12144530 1440583 1515181 CM091759.1 scaffold12 99.28 True local misassembly 12144610 12154381 1515722 1525496 CM091759.1 scaffold12 97.45 True local misassembly 12157064 12172456 1525497 1541221 CM091759.1 scaffold12 97.05 True local misassembly 12171729 12172598 1541222 1542087 CM091759.1 scaffold12 96.81 True CONTIG scaffold12 1542087 correct CONTIG scaffold25 912 unaligned 13189393 13200043 1604 12252 CM091751.1 scaffold17 99.48 True fake: scaffold gap size wrong estimation (local) 13200362 13212629 12605 24875 CM091751.1 scaffold17 99.33 True relocation, inconsistency = 50664 13263294 13264422 24876 26313 CM091751.1 scaffold17 96.12 True fake: scaffold gap size wrong estimation (local) 13264504 13361920 26408 125280 CM091751.1 scaffold17 98.92 True fake: scaffold gap size wrong estimation (local) 13362462 13407916 126522 172582 CM091751.1 scaffold17 98.12 True indel: stretch of mismatches 13407974 13567320 172640 333323 CM091751.1 scaffold17 99.49 True indel: indel (> 5bp) 13567359 13612960 333368 379749 CM091751.1 scaffold17 98.86 True fake: scaffold gap size wrong estimation (local) 13614126 13687877 381208 456929 CM091751.1 scaffold17 98.86 True indel: indel (> 5bp) 13688057 13848042 457063 620666 CM091751.1 scaffold17 98.55 True indel: indel (> 5bp) 13848258 13927065 620821 704103 CM091751.1 scaffold17 98.91 True fake: scaffold gap size wrong estimation (local) 13927335 13963596 704967 741708 CM091751.1 scaffold17 98.27 True fake: scaffold gap size wrong estimation (local) 13963976 14004420 742313 782756 CM091751.1 scaffold17 99.21 True local misassembly 14004489 14167654 782968 946188 CM091751.1 scaffold17 99.5 True indel: indel (> 5bp) 14167897 14222160 946456 1002288 CM091751.1 scaffold17 99.77 True indel: indel (> 5bp) 14222609 14348959 1002759 1129300 CM091751.1 scaffold17 98.09 True indel: indel (> 5bp) 14349118 14446544 1129472 1227200 CM091751.1 scaffold17 98.8 True local misassembly 14447334 14449375 1227626 1229662 CM091751.1 scaffold17 99.07 True indel: indel (> 5bp) 14449541 14469850 1229842 1250892 CM091751.1 scaffold17 97.0 True fake: scaffold gap size wrong estimation (local) 14470604 14484720 1251892 1267147 CM091751.1 scaffold17 99.28 True local misassembly 14485867 14489716 1268050 1271905 CM091751.1 scaffold17 99.43 True local misassembly 14489210 14490380 1271911 1273083 CM091751.1 scaffold17 99.06 True indel: indel (> 5bp) 14490559 14492545 1273249 1275234 CM091751.1 scaffold17 99.0 True local misassembly 14492785 14500356 1275622 1283223 CM091751.1 scaffold17 98.87 True fake: not a misassembly (possible transposable element) 14526563 14527475 1283514 1284426 CM091751.1 scaffold17 99.67 True fake: not a misassembly (possible transposable element) 14500861 14534403 1284427 1317482 CM091751.1 scaffold17 96.48 True fake: scaffold gap size wrong estimation (local) 14534578 14541818 1318745 1326005 CM091751.1 scaffold17 99.08 True fake: scaffold gap size wrong estimation (local) 14541911 14544289 1326101 1328516 CM091751.1 scaffold17 99.62 True fake: scaffold gap size wrong estimation (local) 14544401 14576140 1329487 1361424 CM091751.1 scaffold17 99.33 True local misassembly 14578044 14580695 1361582 1364265 CM091751.1 scaffold17 98.4 True indel: indel (> 5bp) 14580743 14582989 1364302 1366548 CM091751.1 scaffold17 99.07 True indel: indel (> 5bp) 14583408 14591381 1366941 1375100 CM091751.1 scaffold17 97.13 True indel: indel (> 5bp) 14591549 14595948 1375305 1379732 CM091751.1 scaffold17 99.2 True local misassembly 14596250 14624840 1379762 1409026 CM091751.1 scaffold17 96.24 True fake: scaffold gap size wrong estimation (local) 14625215 14626198 1410138 1411126 CM091751.1 scaffold17 99.39 True indel: indel (> 5bp) 14626266 14705730 1411161 1491368 CM091751.1 scaffold17 99.55 True indel: indel (> 5bp) 14705804 14733014 1491459 1520377 CM091751.1 scaffold17 99.42 True indel: indel (<= 5bp) 14733062 14734047 1520420 1521412 CM091751.1 scaffold17 95.13 True fake: scaffold gap size wrong estimation (local) 14734144 14756984 1521686 1544504 CM091751.1 scaffold17 99.18 True local misassembly 14758610 14763138 1544505 1549036 CM091751.1 scaffold17 99.5 True indel: indel (> 5bp) 14763185 14899752 1549111 1689494 CM091751.1 scaffold17 99.05 True local misassembly 14899147 14971710 1689505 1762312 CM091751.1 scaffold17 98.49 True CONTIG scaffold17 1763620 misassembled 8841188 8856567 4997 20355 CM091766.1 scaffold14 99.61 True fake: scaffold gap size wrong estimation (local) 8856583 8879650 20874 44556 CM091766.1 scaffold14 99.9 True fake: not a misassembly (possible transposable element) 8878341 8879604 45834 44571 CM091766.1 scaffold14 99.92 True fake: not a misassembly (possible transposable element) 8879999 8885043 45835 50879 CM091766.1 scaffold14 99.92 True fake: scaffold gap size wrong estimation (local) 8885656 8961728 51522 128045 CM091766.1 scaffold14 99.86 True local misassembly 8961803 9059877 128464 227017 CM091766.1 scaffold14 99.34 True fake: not a misassembly (possible transposable element) 9058878 9059843 227983 227018 CM091766.1 scaffold14 99.7 True fake: not a misassembly (possible transposable element) 9060031 9221078 227984 390671 CM091766.1 scaffold14 99.4 True indel: indel (> 5bp) 9221090 9280558 390672 452191 CM091766.1 scaffold14 99.03 True indel: indel (<= 5bp) 9280584 9382142 452222 553763 CM091766.1 scaffold14 99.62 True inversion 9382158 9382669 554290 553779 CM091766.1 scaffold14 99.82 True relocation, inconsistency = -793528 9381994 10175685 554291 1355934 CM091766.1 scaffold14 99.38 True local misassembly 10175117 10181740 1355961 1362579 CM091766.1 scaffold14 99.76 True local misassembly 10180746 10228259 1362580 1412421 CM091766.1 scaffold14 97.73 True fake: scaffold gap size wrong estimation (local) 10228509 10353180 1413951 1538840 CM091766.1 scaffold14 99.5 True indel: indel (> 5bp) 10353204 10375369 1538871 1561010 CM091766.1 scaffold14 99.64 True fake: scaffold gap size wrong estimation (local) 10375909 10394931 1562318 1581340 CM091766.1 scaffold14 99.73 True fake: scaffold gap size wrong estimation (local) 10395647 10396659 1581504 1582516 CM091766.1 scaffold14 98.91 True indel: indel (> 5bp) 10396821 10421630 1582670 1607492 CM091766.1 scaffold14 99.83 True indel: indel (> 5bp) 10421777 10604884 1607660 1792188 CM091766.1 scaffold14 99.63 True local misassembly 10604158 10623735 1792189 1811763 CM091766.1 scaffold14 99.5 True indel: indel (> 5bp) 10623881 10704708 1811952 1893410 CM091766.1 scaffold14 99.59 True CONTIG scaffold14 1893410 misassembled CONTIG scaffold28 1137 unaligned 16552979 16554351 1374 1 CM091752.1 scaffold29 99.78 True CONTIG scaffold29 1374 correct 11137171 11623467 486937 22 CM091753.1 scaffold18 99.59 True indel: indel (<= 5bp) 11102700 11137033 521899 487077 CM091753.1 scaffold18 98.21 True indel: indel (> 5bp) 11062372 11102646 562986 521987 CM091753.1 scaffold18 99.28 True indel: indel (> 5bp) 10991741 11062285 636400 563084 CM091753.1 scaffold18 99.24 True indel: indel (<= 5bp) 10986846 10991692 641259 636448 CM091753.1 scaffold18 98.58 True fake: not a misassembly (possible transposable element) 10986616 10987764 641288 642437 CM091753.1 scaffold18 98.87 True fake: not a misassembly (possible transposable element) 10913758 10986566 716361 642444 CM091753.1 scaffold18 99.22 True translocation 2309189 2347152 716394 754384 CM091759.1 scaffold18 99.8 True fake: scaffold gap size wrong estimation (local) 2347217 2475102 754852 884628 CM091759.1 scaffold18 98.73 True CONTIG scaffold18 884628 misassembled CONTIG scaffold31 419 unaligned 4594992 4601315 1 6239 CM091768.1 scaffold32 98.62 True fake: scaffold gap size wrong estimation (local) 4601503 4602885 6596 7978 CM091768.1 scaffold32 99.93 True fake: scaffold gap size wrong estimation (local) 4602981 4603965 8086 9070 CM091768.1 scaffold32 100.0 True fake: scaffold gap size wrong estimation (local) 4605990 4617253 10891 22165 CM091768.1 scaffold32 99.88 True local misassembly 4617935 4619176 22374 23615 CM091768.1 scaffold32 99.68 True fake: scaffold gap size wrong estimation (local) 4619496 4620661 24363 25545 CM091768.1 scaffold32 97.13 True CONTIG scaffold32 25545 correct 19499978 19513326 174 13515 CM091751.1 scaffold27 99.12 True local misassembly 19513302 19515328 14044 16071 CM091751.1 scaffold27 99.01 True local misassembly 19514652 19516502 16072 17922 CM091751.1 scaffold27 99.24 True local misassembly 19517342 19519243 18940 20838 CM091751.1 scaffold27 98.95 True local misassembly 19520150 19520655 22290 22795 CM091751.1 scaffold27 100.0 True local misassembly 19522814 19523432 24680 25298 CM091751.1 scaffold27 98.71 True local misassembly 19525550 19526626 27393 28469 CM091751.1 scaffold27 99.07 True indel: indel (<= 5bp) 19526967 19527526 28807 29366 CM091751.1 scaffold27 97.5 True fake: scaffold gap size wrong estimation (local) 19528031 19528683 29887 30539 CM091751.1 scaffold27 99.85 True CONTIG scaffold27 32308 correct 9060124 9135646 78111 1 CM091763.1 scaffold11 99.06 True fake: scaffold gap size wrong estimation (local) 9037808 9059974 101085 78301 CM091763.1 scaffold11 96.73 True local misassembly 9030888 9036864 107929 101947 CM091763.1 scaffold11 99.1 True fake: scaffold gap size wrong estimation (local) 8949030 9030752 191410 108267 CM091763.1 scaffold11 97.44 True indel: indel (> 5bp) 8928760 8948953 211871 191515 CM091763.1 scaffold11 96.82 True local misassembly 8908548 8928582 231882 211938 CM091763.1 scaffold11 98.8 True local misassembly 8851794 8907980 289740 232571 CM091763.1 scaffold11 98.93 True local misassembly 8842580 8850684 298820 290721 CM091763.1 scaffold11 99.41 True local misassembly 8749399 8842446 393319 299203 CM091763.1 scaffold11 99.16 True indel: indel (> 5bp) 8648575 8749355 494534 393373 CM091763.1 scaffold11 99.16 True fake: scaffold gap size wrong estimation (local) 8642995 8648238 500172 494921 CM091763.1 scaffold11 99.09 True indel: indel (> 5bp) 8638272 8642899 504858 500238 CM091763.1 scaffold11 98.88 True local misassembly 8620329 8638136 523059 505246 CM091763.1 scaffold11 99.29 True local misassembly 8497097 8619663 646578 523462 CM091763.1 scaffold11 99.3 True local misassembly 8473222 8496476 670851 647686 CM091763.1 scaffold11 98.95 True fake: scaffold gap size wrong estimation (local) 8422833 8472237 722043 672005 CM091763.1 scaffold11 99.44 True local misassembly 8217745 8422705 929773 722389 CM091763.1 scaffold11 99.14 True local misassembly 8093104 8216660 1055076 930881 CM091763.1 scaffold11 99.28 True indel: indel (> 5bp) 8066560 8093046 1084188 1055159 CM091763.1 scaffold11 99.27 True indel: indel (> 5bp) 8010988 8066498 1140323 1084230 CM091763.1 scaffold11 99.42 True fake: scaffold gap size wrong estimation (local) 7961376 8010873 1191267 1140443 CM091763.1 scaffold11 97.93 True fake: scaffold gap size wrong estimation (local) 7646370 7960437 1513614 1193565 CM091763.1 scaffold11 99.09 True local misassembly 7526978 7646009 1635572 1514487 CM091763.1 scaffold11 98.69 True local misassembly 7481552 7526941 1685028 1636574 CM091763.1 scaffold11 99.34 True local misassembly 7213424 7482573 1961462 1685029 CM091763.1 scaffold11 99.08 True fake: scaffold gap size wrong estimation (local) 7199065 7213255 1976318 1962138 CM091763.1 scaffold11 99.44 True local misassembly 7142703 7199001 2033127 1976489 CM091763.1 scaffold11 99.46 True CONTIG scaffold11 2034059 correct 4660496 4667730 608 7831 CM091754.1 scaffold34 97.41 True fake: scaffold gap size wrong estimation (local) 4668112 4669002 7912 8825 CM091754.1 scaffold34 97.37 True fake: scaffold gap size wrong estimation (local) 4668957 4688245 11087 30434 CM091754.1 scaffold34 99.56 True fake: scaffold gap size wrong estimation (local) 4689150 4691134 31539 33523 CM091754.1 scaffold34 100.0 True local misassembly 4690748 4695705 33753 38791 CM091754.1 scaffold34 98.41 True CONTIG scaffold34 38791 correct 11229325 11235997 6706 1 CM091765.1 scaffold35 99.39 True local misassembly 11224020 11227668 10477 6707 CM091765.1 scaffold35 96.96 True indel: indel (> 5bp) 11223108 11223960 11425 10573 CM091765.1 scaffold35 100.0 True fake: scaffold gap size wrong estimation (local) 11221401 11222344 13417 12455 CM091765.1 scaffold35 97.2 True fake: scaffold gap size wrong estimation (local) 11220143 11221244 14714 13589 CM091765.1 scaffold35 97.51 True fake: scaffold gap size wrong estimation (local) 11215363 11218368 21356 18351 CM091765.1 scaffold35 99.97 True fake: scaffold gap size wrong estimation (local) 11211821 11214366 24400 21813 CM091765.1 scaffold35 98.18 True CONTIG scaffold35 24400 correct 8568399 8569095 697 1 CM091767.1 scaffold36 100.0 True local misassembly 8566583 8567466 2271 1386 CM091767.1 scaffold36 99.66 True fake: scaffold gap size wrong estimation (local) 8551081 8566471 18703 3146 CM091767.1 scaffold36 99.5 True indel: indel (> 5bp) 8546301 8550996 23470 18774 CM091767.1 scaffold36 99.87 True local misassembly 8544142 8546206 25922 23853 CM091767.1 scaffold36 99.42 True fake: scaffold gap size wrong estimation (local) 8534449 8544345 37734 27792 CM091767.1 scaffold36 99.44 True relocation, inconsistency = 413350 8957696 8963603 37735 43668 CM091767.1 scaffold36 99.46 True fake: scaffold gap size wrong estimation (local) 8964182 8964920 44592 45330 CM091767.1 scaffold36 99.86 True CONTIG scaffold36 45350 misassembled CONTIG scaffold38 896 unaligned CONTIG scaffold39 457 unaligned 13045314 13050551 8607 3369 CM091755.1 scaffold5 99.62 True local misassembly 12887881 13044566 166269 9393 CM091755.1 scaffold5 98.93 True indel: indel (> 5bp) 12878758 12887858 175414 166317 CM091755.1 scaffold5 99.52 True relocation, inconsistency = 71805 12558492 12806952 427038 175415 CM091755.1 scaffold5 98.15 True fake: scaffold gap size wrong estimation (local) 12270005 12558336 716342 427637 CM091755.1 scaffold5 99.34 True local misassembly 12213236 12269780 774139 716916 CM091755.1 scaffold5 99.26 True fake: scaffold gap size wrong estimation (local) 12098684 12213151 889968 775042 CM091755.1 scaffold5 99.23 True local misassembly 12050721 12099661 939958 889974 CM091755.1 scaffold5 98.78 True indel: indel (> 5bp) 11930228 12050456 1065178 940230 CM091755.1 scaffold5 99.0 True fake: scaffold gap size wrong estimation (local) 11887738 11930070 1109047 1065906 CM091755.1 scaffold5 99.17 True local misassembly 11855789 11888786 1142854 1109048 CM091755.1 scaffold5 98.96 True indel: indel (<= 5bp) 11800202 11855748 1199258 1142900 CM091755.1 scaffold5 99.26 True fake: scaffold gap size wrong estimation (local) 11793151 11799748 1206661 1200110 CM091755.1 scaffold5 98.7 True fake: scaffold gap size wrong estimation (local) 11784405 11790365 1215335 1209377 CM091755.1 scaffold5 99.57 True local misassembly 11716512 11783140 1285914 1215336 CM091755.1 scaffold5 98.2 True local misassembly 11627606 11716408 1377702 1286403 CM091755.1 scaffold5 99.09 True indel: indel (> 5bp) 11614227 11627517 1391105 1377779 CM091755.1 scaffold5 99.26 True fake: scaffold gap size wrong estimation (local) 11435516 11614063 1573208 1391969 CM091755.1 scaffold5 99.27 True local misassembly 11415891 11435470 1592945 1573348 CM091755.1 scaffold5 99.87 True indel: indel (<= 5bp) 11323426 11415882 1685480 1592952 CM091755.1 scaffold5 99.87 True fake: scaffold gap size wrong estimation (local) 11228668 11323618 1781670 1685864 CM091755.1 scaffold5 98.33 True fake: not a misassembly (possible transposable element) 9505607 9506347 1781671 1782411 CM091763.1 scaffold5 99.33 True fake: not a misassembly (possible transposable element) 11189787 11228766 1822581 1782423 CM091755.1 scaffold5 96.3 True local misassembly 11146632 11190287 1868863 1822585 CM091755.1 scaffold5 96.04 True local misassembly 11060506 11146478 1956297 1869265 CM091755.1 scaffold5 98.58 True indel: indel (> 5bp) 11018872 11060472 1998577 1956367 CM091755.1 scaffold5 99.0 True indel: indel (<= 5bp) 10889025 11018850 2133165 1998600 CM091755.1 scaffold5 98.08 True indel: indel (<= 5bp) 10841868 10888974 2180876 2133215 CM091755.1 scaffold5 98.61 True fake: not a misassembly (possible transposable element) 10841728 10842969 2180877 2182120 CM091755.1 scaffold5 99.38 True fake: not a misassembly (possible transposable element) 10829680 10841651 2194101 2182121 CM091755.1 scaffold5 99.32 True fake: scaffold gap size wrong estimation (local) 10772935 10829373 2252490 2194351 CM091755.1 scaffold5 98.48 True indel: indel (> 5bp) 10727007 10772816 2299069 2252655 CM091755.1 scaffold5 98.19 True CONTIG scaffold5 2299070 misassembled 16478 33449 4270 21341 CM091754.1 scaffold37 99.45 True fake: scaffold gap size wrong estimation (local) 33685 72843 22050 61290 CM091754.1 scaffold37 99.62 True fake: scaffold gap size wrong estimation (local) 72577 166078 61614 153946 CM091754.1 scaffold37 97.28 True indel: indel (> 5bp) 166194 170905 154052 158646 CM091754.1 scaffold37 96.51 True local misassembly 171263 173852 159131 161721 CM091754.1 scaffold37 99.73 True indel: indel (<= 5bp) 173908 207346 161782 194953 CM091754.1 scaffold37 98.03 True indel: indel (<= 5bp) 207443 232185 195049 219962 CM091754.1 scaffold37 98.51 True indel: indel (> 5bp) 232218 255777 220002 243626 CM091754.1 scaffold37 98.77 True local misassembly 255215 306715 243645 294971 CM091754.1 scaffold37 98.54 True local misassembly 306745 325701 295217 313956 CM091754.1 scaffold37 97.95 True local misassembly 324520 395719 313957 385508 CM091754.1 scaffold37 96.89 True indel: indel (<= 5bp) 395747 402587 385539 392436 CM091754.1 scaffold37 98.12 True local misassembly 401719 405681 392437 396506 CM091754.1 scaffold37 96.49 True fake: scaffold gap size wrong estimation (local) 407020 408484 398761 400225 CM091754.1 scaffold37 99.73 True indel: indel (> 5bp) 408527 448176 400258 439932 CM091754.1 scaffold37 98.94 True indel: indel (<= 5bp) 448283 500458 440042 492427 CM091754.1 scaffold37 97.44 True local misassembly 501331 502323 494264 495256 CM091754.1 scaffold37 99.7 True indel: indel (<= 5bp) 502492 503050 495424 495982 CM091754.1 scaffold37 99.28 True indel: indel (<= 5bp) 503051 503783 495984 496716 CM091754.1 scaffold37 99.05 True local misassembly 505165 506058 498096 498989 CM091754.1 scaffold37 99.22 True indel: indel (> 5bp) 506069 509465 498990 502386 CM091754.1 scaffold37 99.56 True local misassembly 510125 510665 503047 503587 CM091754.1 scaffold37 99.08 True indel: indel (<= 5bp) 510666 511660 503589 504583 CM091754.1 scaffold37 99.6 True indel: indel (<= 5bp) 511661 512862 504585 505786 CM091754.1 scaffold37 99.58 True indel: indel (<= 5bp) 512864 513950 505787 506873 CM091754.1 scaffold37 99.82 True local misassembly 514536 516371 506994 508829 CM091754.1 scaffold37 99.67 True indel: indel (> 5bp) 516871 517496 509300 509925 CM091754.1 scaffold37 98.88 True indel: indel (> 5bp) 517523 518181 509958 510616 CM091754.1 scaffold37 100.0 True local misassembly 520649 537075 513127 529391 CM091754.1 scaffold37 98.01 True indel: indel (> 5bp) 537126 552964 529469 545619 CM091754.1 scaffold37 98.93 True local misassembly 550161 550673 545850 546362 CM091754.1 scaffold37 98.64 True indel: indel (<= 5bp) 550712 551397 546403 547088 CM091754.1 scaffold37 99.56 True indel: indel (<= 5bp) 551790 552646 547482 548338 CM091754.1 scaffold37 99.53 True fake: scaffold gap size wrong estimation (local) 553449 554344 549200 550095 CM091754.1 scaffold37 99.78 True local misassembly 555006 555648 550739 551381 CM091754.1 scaffold37 99.69 True indel: indel (<= 5bp) 555653 556338 551382 552067 CM091754.1 scaffold37 99.27 True indel: indel (> 5bp) 556345 557050 552068 552773 CM091754.1 scaffold37 99.43 True indel: indel (<= 5bp) 557051 560013 552775 555737 CM091754.1 scaffold37 99.63 True indel: indel (<= 5bp) 560015 560697 555738 556420 CM091754.1 scaffold37 99.12 True indel: indel (<= 5bp) 561014 563120 556739 558845 CM091754.1 scaffold37 99.72 True indel: indel (<= 5bp) 563122 564783 558846 560507 CM091754.1 scaffold37 99.46 True indel: indel (<= 5bp) 564785 565375 560508 561098 CM091754.1 scaffold37 99.83 True indel: indel (<= 5bp) 565377 566159 561099 561881 CM091754.1 scaffold37 99.62 True indel: indel (> 5bp) 566618 569444 562349 565175 CM091754.1 scaffold37 99.72 True local misassembly 571137 571975 566871 567709 CM091754.1 scaffold37 99.4 True indel: indel (<= 5bp) 572134 572873 567870 568609 CM091754.1 scaffold37 99.73 True indel: indel (<= 5bp) 572874 573853 568611 569590 CM091754.1 scaffold37 99.59 True indel: indel (<= 5bp) 573854 574535 569592 570273 CM091754.1 scaffold37 99.56 True indel: indel (<= 5bp) 574537 575325 570274 571062 CM091754.1 scaffold37 99.87 True indel: indel (<= 5bp) 575327 576814 571063 572550 CM091754.1 scaffold37 99.66 True local misassembly 580506 582670 572551 574715 CM091754.1 scaffold37 99.49 True indel: indel (> 5bp) 582677 583446 574716 575485 CM091754.1 scaffold37 98.57 True indel: indel (<= 5bp) 583447 584690 575488 576731 CM091754.1 scaffold37 99.92 True local misassembly 585268 586327 577192 578251 CM091754.1 scaffold37 99.72 True indel: indel (<= 5bp) 586328 587608 578253 579533 CM091754.1 scaffold37 99.45 True indel: indel (> 5bp) 587615 590254 579534 582173 CM091754.1 scaffold37 99.77 True indel: indel (<= 5bp) 590255 592557 582175 584477 CM091754.1 scaffold37 99.61 True indel: indel (<= 5bp) 592562 594157 584478 586073 CM091754.1 scaffold37 99.56 True indel: indel (<= 5bp) 594163 596707 586074 588618 CM091754.1 scaffold37 99.65 True local misassembly 597513 598187 589421 590095 CM091754.1 scaffold37 98.67 True indel: indel (<= 5bp) 598189 598866 590096 590773 CM091754.1 scaffold37 98.97 True indel: indel (<= 5bp) 598867 600225 590775 592133 CM091754.1 scaffold37 99.48 True indel: indel (> 5bp) 600263 601251 592134 593122 CM091754.1 scaffold37 97.78 True indel: indel (<= 5bp) 601252 602168 593124 594040 CM091754.1 scaffold37 99.13 True indel: indel (<= 5bp) 602169 603895 594042 595768 CM091754.1 scaffold37 99.77 True indel: indel (<= 5bp) 603897 605249 595769 597121 CM091754.1 scaffold37 99.63 True indel: indel (<= 5bp) 605250 605813 597123 597686 CM091754.1 scaffold37 99.47 True indel: indel (<= 5bp) 605885 606749 597760 598624 CM091754.1 scaffold37 99.65 True indel: indel (> 5bp) 607095 608275 598990 600170 CM091754.1 scaffold37 99.49 True local misassembly 609064 629056 600977 621150 CM091754.1 scaffold37 97.78 True fake: scaffold gap size wrong estimation (local) 629212 647941 621333 640720 CM091754.1 scaffold37 95.55 True local misassembly 649080 671093 641996 663720 CM091754.1 scaffold37 96.04 True local misassembly 671621 696455 664707 689830 CM091754.1 scaffold37 98.0 True indel: indel (> 5bp) 696685 712240 690133 705606 CM091754.1 scaffold37 98.44 True indel: indel (> 5bp) 712300 713636 705686 707022 CM091754.1 scaffold37 100.0 True indel: indel (> 5bp) 714069 714582 707416 707929 CM091754.1 scaffold37 97.86 True local misassembly 716447 718655 708533 710741 CM091754.1 scaffold37 99.23 True local misassembly 719693 720448 711779 712534 CM091754.1 scaffold37 99.34 True indel: indel (> 5bp) 720848 722331 712967 714450 CM091754.1 scaffold37 99.46 True indel: indel (<= 5bp) 722332 723094 714452 715214 CM091754.1 scaffold37 98.82 True local misassembly 722588 744951 715353 737793 CM091754.1 scaffold37 98.59 True indel: indel (> 5bp) 744957 745857 737869 738765 CM091754.1 scaffold37 95.84 True local misassembly 746936 767393 738949 759269 CM091754.1 scaffold37 97.98 True local misassembly 767565 771886 759617 763938 CM091754.1 scaffold37 98.82 True CONTIG scaffold37 764021 correct CONTIG scaffold42 539 unaligned 4965261 4992769 1 27638 CM091763.1 scaffold24 97.22 True local misassembly 4992306 5329009 27859 367572 CM091763.1 scaffold24 99.27 True local misassembly 5329114 5395844 368089 436394 CM091763.1 scaffold24 95.4 True fake: scaffold gap size wrong estimation (local) 5396545 5405050 437595 446094 CM091763.1 scaffold24 99.52 True indel: indel (> 5bp) 5405188 5545458 446248 586583 CM091763.1 scaffold24 99.72 True local misassembly 5545501 5622073 586914 664692 CM091763.1 scaffold24 98.41 True indel: indel (> 5bp) 5622114 5788515 664742 831665 CM091763.1 scaffold24 99.48 True local misassembly 5787870 5839266 831669 884456 CM091763.1 scaffold24 99.21 True indel: stretch of mismatches 5839295 5988301 884485 1034273 CM091763.1 scaffold24 98.74 True indel: indel (> 5bp) 5988386 6311065 1034367 1360815 CM091763.1 scaffold24 98.65 True local misassembly 6314203 6315106 1365739 1366642 CM091763.1 scaffold24 99.89 True indel: indel (<= 5bp) 6315107 6315696 1366644 1367233 CM091763.1 scaffold24 100.0 True local misassembly 6318326 6318866 1368151 1368691 CM091763.1 scaffold24 99.45 True CONTIG scaffold24 1369484 correct 12776315 12777265 1060 116 CM091753.1 scaffold26 98.11 True fake: scaffold gap size wrong estimation (local) 12544708 12775440 234619 1909 CM091753.1 scaffold26 98.58 True fake: not a misassembly (possible transposable element) 12436101 12437336 236624 237858 CM091752.1 scaffold26 98.87 True fake: not a misassembly (possible transposable element) 12439245 12541189 342048 239754 CM091753.1 scaffold26 99.35 True indel: indel (> 5bp) 12202220 12439186 581412 342101 CM091753.1 scaffold26 99.06 True fake: scaffold gap size wrong estimation (local) 12170323 12202033 613645 581592 CM091753.1 scaffold26 99.13 True fake: scaffold gap size wrong estimation (local) 12125766 12170174 661618 613809 CM091753.1 scaffold26 97.7 True fake: scaffold gap size wrong estimation (local) 12044474 12125168 747502 662994 CM091753.1 scaffold26 99.28 True local misassembly 12042859 12043886 749580 748553 CM091753.1 scaffold26 99.51 True fake: scaffold gap size wrong estimation (local) 11953885 12042145 844154 750961 CM091753.1 scaffold26 99.08 True fake: scaffold gap size wrong estimation (local) 11880596 11953736 919816 845055 CM091753.1 scaffold26 99.57 True fake: scaffold gap size wrong estimation (local) 11861155 11880514 939828 919926 CM091753.1 scaffold26 98.81 True indel: indel (> 5bp) 11859809 11861056 941203 939956 CM091753.1 scaffold26 99.84 True fake: scaffold gap size wrong estimation (local) 11856373 11859536 945384 942220 CM091753.1 scaffold26 99.43 True local misassembly 11852353 11857366 950491 945401 CM091753.1 scaffold26 99.66 True fake: scaffold gap size wrong estimation (local) 11838850 11852199 963982 950635 CM091753.1 scaffold26 99.36 True local misassembly 11836958 11840629 967655 963983 CM091753.1 scaffold26 99.65 True local misassembly 11786462 11837952 1020584 967656 CM091753.1 scaffold26 99.13 True fake: scaffold gap size wrong estimation (local) 11725474 11786320 1084892 1021666 CM091753.1 scaffold26 99.3 True fake: scaffold gap size wrong estimation (local) 11687294 11725172 1123828 1085513 CM091753.1 scaffold26 99.27 True fake: scaffold gap size wrong estimation (local) 11649458 11687204 1162293 1124244 CM091753.1 scaffold26 96.93 True fake: scaffold gap size wrong estimation (local) 11626584 11649151 1185968 1163394 CM091753.1 scaffold26 99.82 True CONTIG scaffold26 1185968 correct CONTIG scaffold45 1053 unaligned 11390122 11405069 15126 1 CM091765.1 scaffold46 98.69 True indel: stretch of mismatches 11384345 11389987 20926 15261 CM091765.1 scaffold46 99.51 True fake: scaffold gap size wrong estimation (local) 11360822 11384196 45064 21427 CM091765.1 scaffold46 98.08 True indel: indel (> 5bp) 11345774 11360722 60017 45139 CM091765.1 scaffold46 96.3 True fake: scaffold gap size wrong estimation (local) 11343430 11345471 62892 60851 CM091765.1 scaffold46 99.95 True CONTIG scaffold46 62892 correct 3701755 3702341 660 91 CM091768.1 scaffold47 95.41 True fake: scaffold gap size wrong estimation (local) 3700868 3701677 3388 2580 CM091768.1 scaffold47 98.27 True relocation, inconsistency = 7862 3689938 3691699 6453 4695 CM091768.1 scaffold47 99.77 True local misassembly 3689380 3691007 8083 6454 CM091768.1 scaffold47 99.39 True CONTIG scaffold47 8233 misassembled 16796038 16797112 1 1095 CM091756.1 scaffold44 97.99 True fake: scaffold gap size wrong estimation (local) 16797943 16799993 2403 4452 CM091756.1 scaffold44 99.9 True fake: scaffold gap size wrong estimation (local) 16800309 16807508 5058 12278 CM091756.1 scaffold44 99.61 True fake: scaffold gap size wrong estimation (local) 16808894 16809742 13836 14741 CM091756.1 scaffold44 95.14 True indel: indel (> 5bp) 16809840 16826956 14917 32123 CM091756.1 scaffold44 99.4 True fake: scaffold gap size wrong estimation (local) 16828615 16844591 34415 50738 CM091756.1 scaffold44 98.76 True indel: indel (> 5bp) 16844823 16847321 50964 53462 CM091756.1 scaffold44 99.96 True fake: scaffold gap size wrong estimation (local) 16847794 16856091 53944 62302 CM091756.1 scaffold44 99.19 True fake: scaffold gap size wrong estimation (local) 16857781 16858287 64224 64730 CM091756.1 scaffold44 100.0 True indel: indel (<= 5bp) 16858363 16859145 64805 65587 CM091756.1 scaffold44 99.87 True indel: indel (> 5bp) 16859160 16860936 65588 67364 CM091756.1 scaffold44 99.89 True indel: indel (<= 5bp) 16860937 16862484 67366 68913 CM091756.1 scaffold44 100.0 True local misassembly 16862842 16863445 69668 70271 CM091756.1 scaffold44 100.0 True fake: scaffold gap size wrong estimation (local) 16866956 16873473 73254 80284 CM091756.1 scaffold44 97.21 True CONTIG scaffold44 80284 correct 13717622 13786729 171 69285 CM091755.1 scaffold43 99.49 True fake: scaffold gap size wrong estimation (local) 13786941 13803167 69582 86191 CM091755.1 scaffold43 96.13 True fake: scaffold gap size wrong estimation (local) 13803155 13902424 86738 187199 CM091755.1 scaffold43 98.3 True local misassembly 13902554 13995820 187415 281813 CM091755.1 scaffold43 98.42 True indel: indel (<= 5bp) 13995939 14001948 281934 288557 CM091755.1 scaffold43 98.16 True indel: indel (> 5bp) 14001990 14148500 288614 435433 CM091755.1 scaffold43 98.11 True local misassembly 14148877 14154280 435526 440840 CM091755.1 scaffold43 97.38 True local misassembly 14155076 14230322 441301 517293 CM091755.1 scaffold43 97.63 True CONTIG scaffold43 518039 correct 589761 591285 1 1526 CM091764.1 scaffold50 99.67 True fake: scaffold gap size wrong estimation (local) 592860 616597 2870 26653 CM091764.1 scaffold50 99.75 True indel: indel (<= 5bp) 616630 624853 26688 34920 CM091764.1 scaffold50 99.83 True local misassembly 623901 651291 34921 62272 CM091764.1 scaffold50 99.82 True local misassembly 650453 679346 62273 91173 CM091764.1 scaffold50 99.9 True indel: indel (> 5bp) 679373 701688 91259 113605 CM091764.1 scaffold50 99.74 True indel: indel (> 5bp) 701796 713015 113760 125035 CM091764.1 scaffold50 99.4 True fake: scaffold gap size wrong estimation (local) 713263 725139 125179 137057 CM091764.1 scaffold50 99.97 True indel: indel (> 5bp) 725219 775987 137182 188151 CM091764.1 scaffold50 99.75 True CONTIG scaffold50 188151 correct 2384 45296 1 42926 CM091759.1 scaffold2 99.73 True fake: scaffold gap size wrong estimation (local) 45683 414484 43703 420739 CM091759.1 scaffold2 97.88 True local misassembly 414620 452548 421017 459452 CM091759.1 scaffold2 98.94 True fake: scaffold gap size wrong estimation (local) 452698 499920 460329 507995 CM091759.1 scaffold2 98.52 True local misassembly 500098 534768 508077 545259 CM091759.1 scaffold2 96.17 True local misassembly 539738 632444 545260 640518 CM091759.1 scaffold2 98.72 True fake: not a misassembly (possible transposable element) 3508857 3510045 640519 641707 CM091763.1 scaffold2 98.81 True fake: not a misassembly (possible transposable element) 632244 694220 641708 704721 CM091759.1 scaffold2 99.51 True fake: scaffold gap size wrong estimation (local) 694353 768825 705434 780182 CM091759.1 scaffold2 98.94 True fake: scaffold gap size wrong estimation (local) 768921 912259 780905 926875 CM091759.1 scaffold2 99.5 True indel: indel (> 5bp) 912362 1191648 926919 1210566 CM091759.1 scaffold2 99.55 True indel: indel (<= 5bp) 1191703 1244569 1210619 1263459 CM091759.1 scaffold2 99.46 True local misassembly 1244616 1267484 1263932 1288232 CM091759.1 scaffold2 99.4 True fake: scaffold gap size wrong estimation (local) 1267680 1346346 1288815 1368723 CM091759.1 scaffold2 98.68 True fake: scaffold gap size wrong estimation (local) 1346687 1576505 1369384 1601653 CM091759.1 scaffold2 99.23 True fake: not a misassembly (possible transposable element) 1555235 1556184 1601654 1602603 CM091759.1 scaffold2 98.23 True fake: not a misassembly (possible transposable element) 1576461 1616533 1602623 1642723 CM091759.1 scaffold2 99.43 True local misassembly 1615627 1673387 1642724 1700943 CM091759.1 scaffold2 98.77 True indel: indel (<= 5bp) 1673440 1903333 1700997 1932708 CM091759.1 scaffold2 99.16 True fake: scaffold gap size wrong estimation (local) 1904045 1933656 1933385 1962900 CM091759.1 scaffold2 99.33 True CONTIG scaffold2 1962943 correct 1741096 1742302 1248 1 CM091764.1 scaffold51 96.0 True fake: scaffold gap size wrong estimation (local) 1739472 1741176 3655 1950 CM091764.1 scaffold51 99.65 True fake: scaffold gap size wrong estimation (local) 1724777 1739148 18463 4016 CM091764.1 scaffold51 99.41 True fake: scaffold gap size wrong estimation (local) 1712860 1724264 30756 19322 CM091764.1 scaffold51 99.69 True CONTIG scaffold51 30756 correct 17380113 17383574 1 3514 CM091751.1 scaffold53 96.31 True CONTIG scaffold53 3514 correct 16193757 16208965 15612 1 CM091757.1 scaffold52 96.87 True fake: not a misassembly (possible transposable element) 2127522 2129759 17834 15613 CM091759.1 scaffold52 98.17 True fake: not a misassembly (possible transposable element) 16185609 16192307 24698 17948 CM091757.1 scaffold52 98.99 True fake: scaffold gap size wrong estimation (local) 16183213 16184363 26221 25069 CM091757.1 scaffold52 99.57 True CONTIG scaffold52 26221 correct CONTIG scaffold54 482 unaligned 9904980 9906360 1 1381 CM091756.1 scaffold41 99.64 True local misassembly 9905146 9932756 2267 29865 CM091756.1 scaffold41 98.94 True local misassembly 9936341 9971387 29866 65457 CM091756.1 scaffold41 98.88 True indel: indel (> 5bp) 9971467 9992740 65557 87341 CM091756.1 scaffold41 96.4 True indel: indel (> 5bp) 9992909 10006163 87580 101498 CM091756.1 scaffold41 97.72 True local misassembly 10006327 10038352 101904 134944 CM091756.1 scaffold41 95.97 True local misassembly 10038501 10152287 134982 249881 CM091756.1 scaffold41 98.5 True indel: indel (> 5bp) 10152318 10228399 249929 326248 CM091756.1 scaffold41 98.55 True local misassembly 10229191 10230043 326840 327692 CM091756.1 scaffold41 100.0 True local misassembly 10230842 10231930 328508 329596 CM091756.1 scaffold41 99.72 True indel: indel (<= 5bp) 10231931 10233351 329598 331018 CM091756.1 scaffold41 99.65 True indel: indel (> 5bp) 10233714 10234409 331392 332087 CM091756.1 scaffold41 99.43 True indel: indel (> 5bp) 10234827 10238608 332512 336293 CM091756.1 scaffold41 99.37 True local misassembly 10239210 10241273 336897 338960 CM091756.1 scaffold41 99.66 True indel: indel (<= 5bp) 10241274 10242454 338963 340143 CM091756.1 scaffold41 98.81 True indel: indel (> 5bp) 10242906 10244053 340582 341729 CM091756.1 scaffold41 99.04 True indel: indel (> 5bp) 10244361 10245472 342009 343120 CM091756.1 scaffold41 99.1 True local misassembly 10245517 10246109 343431 344023 CM091756.1 scaffold41 99.66 True indel: indel (<= 5bp) 10246110 10246640 344025 344555 CM091756.1 scaffold41 99.44 True local misassembly 10247417 10248767 345334 346684 CM091756.1 scaffold41 99.26 True indel: indel (<= 5bp) 10248986 10252144 346900 350058 CM091756.1 scaffold41 99.37 True local misassembly 10252764 10255086 350668 352990 CM091756.1 scaffold41 98.92 True indel: indel (<= 5bp) 10255087 10256342 352996 354251 CM091756.1 scaffold41 99.52 True indel: indel (> 5bp) 10256350 10256963 354252 354865 CM091756.1 scaffold41 99.67 True local misassembly 10261417 10262226 355537 356346 CM091756.1 scaffold41 99.14 True indel: indel (<= 5bp) 10262238 10262899 356362 357023 CM091756.1 scaffold41 99.55 True local misassembly 10263950 10264482 358091 358623 CM091756.1 scaffold41 99.81 True fake: scaffold gap size wrong estimation (local) 10264779 10265525 361077 361823 CM091756.1 scaffold41 97.19 True indel: indel (> 5bp) 10265850 10266422 362157 362729 CM091756.1 scaffold41 99.65 True indel: indel (<= 5bp) 10266489 10268931 362794 365236 CM091756.1 scaffold41 99.35 True indel: indel (> 5bp) 10268932 10269838 365247 366153 CM091756.1 scaffold41 99.01 True indel: indel (<= 5bp) 10269840 10270577 366154 366891 CM091756.1 scaffold41 99.86 True indel: indel (> 5bp) 10270792 10325575 367078 422795 CM091756.1 scaffold41 98.06 True local misassembly 10324546 10398750 422841 496615 CM091756.1 scaffold41 98.26 True relocation, inconsistency = 60600 10459351 10476223 496616 513382 CM091756.1 scaffold41 98.72 True indel: indel (> 5bp) 10476283 10478186 513449 515346 CM091756.1 scaffold41 98.85 True indel: indel (> 5bp) 10478502 10510557 515715 548348 CM091756.1 scaffold41 99.35 True local misassembly 10510708 10534003 548349 572138 CM091756.1 scaffold41 96.8 True fake: scaffold gap size wrong estimation (local) 10534485 10594750 572778 633761 CM091756.1 scaffold41 98.87 True local misassembly 10595032 10597768 634380 637117 CM091756.1 scaffold41 99.82 True fake: scaffold gap size wrong estimation (local) 10597880 10638757 637258 678197 CM091756.1 scaffold41 99.54 True indel: indel (> 5bp) 10638813 10730057 678262 770027 CM091756.1 scaffold41 99.39 True fake: scaffold gap size wrong estimation (local) 10730290 10757898 770807 798395 CM091756.1 scaffold41 99.22 True indel: indel (<= 5bp) 10757953 10919655 798453 965674 CM091756.1 scaffold41 99.11 True indel: indel (> 5bp) 10919718 10935830 965723 983107 CM091756.1 scaffold41 99.42 True indel: indel (> 5bp) 10935925 10966051 983175 1014818 CM091756.1 scaffold41 96.47 True translocation 13086111 13293919 1225474 1014819 CM091753.1 scaffold41 98.62 True indel: indel (> 5bp) 12948150 13086067 1365035 1225499 CM091753.1 scaffold41 98.49 True fake: scaffold gap size wrong estimation (local) 12946540 12948716 1368717 1366529 CM091753.1 scaffold41 97.86 True CONTIG scaffold41 1368717 misassembled CONTIG scaffold57 812 unaligned 972427 976605 3291 7452 CM091757.1 scaffold48 99.33 True indel: indel (> 5bp) 976646 992327 7453 23328 CM091757.1 scaffold48 98.12 True fake: scaffold gap size wrong estimation (local) 992582 1015094 23511 45946 CM091757.1 scaffold48 99.06 True fake: scaffold gap size wrong estimation (local) 1015488 1031389 46339 62269 CM091757.1 scaffold48 99.38 True indel: indel (> 5bp) 1031648 1130533 62480 162402 CM091757.1 scaffold48 99.04 True fake: scaffold gap size wrong estimation (local) 1130342 1305002 163216 340376 CM091757.1 scaffold48 99.05 True fake: scaffold gap size wrong estimation (local) 1305267 1387978 341083 425200 CM091757.1 scaffold48 98.97 True indel: indel (> 5bp) 1388120 1405741 425360 443002 CM091757.1 scaffold48 99.42 True indel: indel (> 5bp) 1405920 1430689 443189 468225 CM091757.1 scaffold48 99.6 True indel: indel (> 5bp) 1430905 1431978 468459 469532 CM091757.1 scaffold48 99.81 True local misassembly 1432530 1433466 470083 471019 CM091757.1 scaffold48 99.68 True indel: indel (<= 5bp) 1433817 1434405 471368 471956 CM091757.1 scaffold48 99.66 True indel: indel (<= 5bp) 1434618 1435211 472173 472766 CM091757.1 scaffold48 100.0 True fake: scaffold gap size wrong estimation (local) 1435212 1436589 473096 474473 CM091757.1 scaffold48 99.71 True indel: indel (<= 5bp) 1436591 1437281 474474 475164 CM091757.1 scaffold48 98.99 True local misassembly 1437714 1439796 475669 477751 CM091757.1 scaffold48 99.81 True indel: indel (<= 5bp) 1439798 1441488 477752 479442 CM091757.1 scaffold48 99.7 True local misassembly 1441564 1442322 480071 480829 CM091757.1 scaffold48 99.6 True indel: indel (> 5bp) 1442361 1446014 480858 484519 CM091757.1 scaffold48 99.45 True local misassembly 1446973 1495812 485227 534593 CM091757.1 scaffold48 98.14 True local misassembly 1496194 1542233 534780 581137 CM091757.1 scaffold48 98.7 True local misassembly 1542268 1562898 581464 602081 CM091757.1 scaffold48 99.58 True indel: indel (<= 5bp) 1562947 1784567 602135 824399 CM091757.1 scaffold48 98.7 True local misassembly 1783787 1802565 824400 843163 CM091757.1 scaffold48 99.25 True indel: indel (> 5bp) 1802623 1859731 843227 901217 CM091757.1 scaffold48 98.42 True fake: scaffold gap size wrong estimation (local) 1859840 1904944 902275 948082 CM091757.1 scaffold48 99.33 True indel: indel (> 5bp) 1904990 1905874 948141 949030 CM091757.1 scaffold48 98.32 True indel: indel (> 5bp) 1905960 1930553 949164 973666 CM091757.1 scaffold48 98.21 True indel: indel (> 5bp) 1930718 1953250 973780 996734 CM091757.1 scaffold48 99.03 True CONTIG scaffold48 996734 correct 8381539 8382527 1 1010 CM091767.1 scaffold59 96.44 True fake: scaffold gap size wrong estimation (local) 8382633 8407657 2026 27517 CM091767.1 scaffold59 99.01 True CONTIG scaffold59 27629 correct CONTIG scaffold55 5031 unaligned 12105481 12106427 945 1 CM091762.1 scaffold58 98.31 True translocation, scaffold gap is present 8591549 8843754 1594 255169 CM091761.1 scaffold58 99.42 True fake: not a misassembly (possible transposable element) 13819317 13820283 255170 256136 CM091757.1 scaffold58 100.0 True fake: not a misassembly (possible transposable element) 8843808 8862191 256137 274973 CM091761.1 scaffold58 99.53 True indel: indel (> 5bp) 8862410 9030054 275244 444577 CM091761.1 scaffold58 99.04 True fake: not a misassembly (possible transposable element) 9029093 9030040 445572 444624 CM091761.1 scaffold58 99.79 True fake: not a misassembly (possible transposable element) 9030101 9198183 445573 618713 CM091761.1 scaffold58 99.14 True indel: indel (> 5bp) 9198514 9208981 619062 629551 CM091761.1 scaffold58 99.02 True CONTIG scaffold58 629579 misassembled CONTIG scaffold62 664 unaligned 13178107 13178629 6412 5890 CM091751.1 scaffold61 99.24 True unknown 13174893 13176748 10119 8237 CM091751.1 scaffold61 98.09 True unknown CONTIG scaffold61 10119 mis_unaligned CONTIG scaffold64 824 unaligned 3290761 3291443 683 1 CM091759.1 scaffold60 100.0 True indel: indel (> 5bp) 3236805 3290669 56500 786 CM091759.1 scaffold60 98.7 True local misassembly 3127250 3239643 168756 56501 CM091759.1 scaffold60 99.79 True fake: scaffold gap size wrong estimation (local) 3093017 3127150 203953 169241 CM091759.1 scaffold60 99.8 True fake: scaffold gap size wrong estimation (local) 2968915 3092724 329337 204512 CM091759.1 scaffold60 99.92 True fake: scaffold gap size wrong estimation (local) 2861621 2968354 437078 329914 CM091759.1 scaffold60 99.83 True local misassembly 2859947 2863127 440260 437079 CM091759.1 scaffold60 99.97 True local misassembly 2816833 2859332 483679 441165 CM091759.1 scaffold60 99.92 True fake: scaffold gap size wrong estimation (local) 2734262 2816571 566908 484390 CM091759.1 scaffold60 99.82 True local misassembly 2713150 2733861 588232 567476 CM091759.1 scaffold60 99.45 True indel: indel (> 5bp) 2649354 2713077 652215 588376 CM091759.1 scaffold60 99.66 True fake: scaffold gap size wrong estimation (local) 2621931 2649241 681989 653584 CM091759.1 scaffold60 97.92 True local misassembly 2493770 2621848 812029 682553 CM091759.1 scaffold60 99.33 True local misassembly 2475878 2493637 830914 812329 CM091759.1 scaffold60 99.79 True CONTIG scaffold60 830914 correct 15474110 15476325 3966 1708 CM091752.1 scaffold66 97.74 True CONTIG scaffold66 3966 correct 8742810 8795583 52971 1 CM091755.1 scaffold40 99.12 True local misassembly 8582446 8743328 215338 52980 CM091755.1 scaffold40 99.25 True indel: indel (> 5bp) 8538131 8582397 259700 215359 CM091755.1 scaffold40 98.72 True indel: indel (> 5bp) 8479176 8537961 319591 259854 CM091755.1 scaffold40 97.25 True indel: indel (> 5bp) 8424865 8479134 375220 319653 CM091755.1 scaffold40 99.09 True local misassembly 8413053 8425699 387903 375266 CM091755.1 scaffold40 99.45 True fake: scaffold gap size wrong estimation (local) 8324770 8412597 481070 388618 CM091755.1 scaffold40 96.32 True indel: indel (> 5bp) 8278528 8324695 531074 481137 CM091755.1 scaffold40 96.65 True fake: scaffold gap size wrong estimation (local) 8268730 8278388 540894 531234 CM091755.1 scaffold40 99.36 True fake: not a misassembly (possible transposable element) 8268571 8269812 540898 542133 CM091755.1 scaffold40 98.87 True fake: not a misassembly (possible transposable element) 8054176 8268462 764260 542134 CM091755.1 scaffold40 97.93 True indel: indel (> 5bp) 8013779 8053921 805179 764485 CM091755.1 scaffold40 99.05 True fake: not a misassembly (possible transposable element) 8013779 8014773 805343 806338 CM091755.1 scaffold40 99.1 True fake: not a misassembly (possible transposable element) 7942653 8013662 877298 806349 CM091755.1 scaffold40 99.5 True indel: indel (> 5bp) 7939142 7942618 880831 877344 CM091755.1 scaffold40 99.48 True indel: indel (> 5bp) 7900624 7939075 920328 880911 CM091755.1 scaffold40 98.38 True local misassembly 7643402 7900449 1179760 920995 CM091755.1 scaffold40 98.78 True indel: indel (> 5bp) 7599008 7643201 1224735 1179919 CM091755.1 scaffold40 99.26 True indel: indel (> 5bp) 7533579 7598917 1290613 1224815 CM091755.1 scaffold40 99.1 True indel: indel (> 5bp) 7531099 7533530 1293103 1290671 CM091755.1 scaffold40 99.55 True local misassembly 7510470 7532672 1315926 1293121 CM091755.1 scaffold40 99.04 True indel: indel (<= 5bp) 7495874 7510428 1330734 1315971 CM091755.1 scaffold40 98.56 True indel: indel (<= 5bp) 7445007 7495682 1383488 1330928 CM091755.1 scaffold40 98.31 True indel: indel (> 5bp) 7428490 7444978 1400060 1383526 CM091755.1 scaffold40 99.03 True local misassembly 7412676 7429822 1417223 1400068 CM091755.1 scaffold40 99.39 True indel: indel (> 5bp) 7247003 7412599 1587364 1417308 CM091755.1 scaffold40 99.0 True local misassembly 7243446 7246971 1591179 1587653 CM091755.1 scaffold40 99.58 True fake: scaffold gap size wrong estimation (local) 7116293 7243064 1722351 1592429 CM091755.1 scaffold40 98.34 True indel: indel (<= 5bp) 7039592 7116252 1799074 1722395 CM091755.1 scaffold40 99.3 True indel: indel (> 5bp) 7011326 7039417 1827097 1799258 CM091755.1 scaffold40 96.18 True local misassembly 6851737 7011299 1988469 1827226 CM091755.1 scaffold40 98.66 True fake: scaffold gap size wrong estimation (local) 6690142 6851540 2150821 1989019 CM091755.1 scaffold40 99.37 True CONTIG scaffold40 2150821 correct CONTIG scaffold68 375 unaligned CONTIG scaffold69 464 unaligned CONTIG scaffold70 701 unaligned 4292577 4296404 3828 1 CM091768.1 scaffold71 99.48 True relocation, inconsistency = 21599 4269377 4270977 3829 5399 CM091768.1 scaffold71 97.75 True fake: scaffold gap size wrong estimation (local) 4270653 4271592 6935 7873 CM091768.1 scaffold71 99.68 True fake: scaffold gap size wrong estimation (local) 4272298 4274455 8298 10456 CM091768.1 scaffold71 98.29 True CONTIG scaffold71 10456 misassembled 12780174 12855898 3738 80058 CM091760.1 scaffold30 99.01 True fake: scaffold gap size wrong estimation (local) 12856015 12871097 80669 95773 CM091760.1 scaffold30 99.18 True fake: scaffold gap size wrong estimation (local) 12871781 12931218 98115 157013 CM091760.1 scaffold30 98.18 True indel: indel (<= 5bp) 12931303 12967649 157096 194100 CM091760.1 scaffold30 97.85 True indel: indel (> 5bp) 12967695 13131235 194165 360656 CM091760.1 scaffold30 98.49 True fake: scaffold gap size wrong estimation (local) 13131324 13160259 362486 391597 CM091760.1 scaffold30 99.5 True local misassembly 13159684 13242164 391794 474579 CM091760.1 scaffold30 98.45 True fake: scaffold gap size wrong estimation (local) 13242290 13348038 475546 583343 CM091760.1 scaffold30 98.29 True fake: scaffold gap size wrong estimation (local) 13348481 13410535 584137 647792 CM091760.1 scaffold30 99.32 True local misassembly 13410759 13445620 648573 683819 CM091760.1 scaffold30 99.02 True indel: indel (> 5bp) 13445689 13472907 683820 713209 CM091760.1 scaffold30 99.2 True fake: scaffold gap size wrong estimation (local) 13473258 13476079 713883 716709 CM091760.1 scaffold30 99.33 True fake: not a misassembly (possible transposable element) 2092602 2093157 717265 716710 CM091751.1 scaffold30 99.48 True fake: not a misassembly (possible transposable element) 13476105 13517634 717266 760235 CM091760.1 scaffold30 99.31 True fake: scaffold gap size wrong estimation (local) 13517933 13585921 760976 831670 CM091760.1 scaffold30 98.84 True indel: indel (> 5bp) 13585946 13616104 831704 862265 CM091760.1 scaffold30 98.2 True fake: scaffold gap size wrong estimation (local) 13616211 13616727 862634 863150 CM091760.1 scaffold30 99.42 True indel: indel (<= 5bp) 13617028 13617912 863450 864334 CM091760.1 scaffold30 100.0 True indel: indel (> 5bp) 13617917 13618516 864347 864946 CM091760.1 scaffold30 99.67 True indel: stretch of mismatches 13618656 13620263 865086 866693 CM091760.1 scaffold30 99.81 True indel: indel (<= 5bp) 13620265 13621170 866694 867599 CM091760.1 scaffold30 99.23 True indel: indel (<= 5bp) 13621263 13621799 867693 868229 CM091760.1 scaffold30 99.81 True indel: indel (<= 5bp) 13621801 13622793 868230 869222 CM091760.1 scaffold30 99.5 True indel: stretch of mismatches 13623025 13623917 869454 870346 CM091760.1 scaffold30 99.1 True indel: indel (> 5bp) 13624357 13625120 870795 871558 CM091760.1 scaffold30 99.87 True indel: indel (<= 5bp) 13625122 13626284 871559 872721 CM091760.1 scaffold30 99.66 True indel: indel (<= 5bp) 13626285 13627531 872723 873969 CM091760.1 scaffold30 99.84 True indel: indel (<= 5bp) 13628033 13628934 874469 875370 CM091760.1 scaffold30 99.33 True local misassembly 13629554 13630298 875694 876438 CM091760.1 scaffold30 100.0 True indel: indel (<= 5bp) 13630301 13631310 876439 877448 CM091760.1 scaffold30 99.5 True indel: indel (<= 5bp) 13631311 13633297 877450 879436 CM091760.1 scaffold30 99.8 True local misassembly 13634477 13701344 881521 949083 CM091760.1 scaffold30 99.13 True local misassembly 13701386 13756654 950103 1005330 CM091760.1 scaffold30 99.05 True local misassembly 13756746 13763361 1005737 1012379 CM091760.1 scaffold30 98.41 True indel: indel (> 5bp) 13763392 13782456 1012428 1031635 CM091760.1 scaffold30 98.06 True local misassembly 13781406 13783320 1031636 1033550 CM091760.1 scaffold30 99.58 True indel: stretch of mismatches 13783469 13784415 1033699 1034645 CM091760.1 scaffold30 99.89 True indel: indel (<= 5bp) 13784416 13785314 1034647 1035545 CM091760.1 scaffold30 99.44 True local misassembly 13786753 13787583 1036360 1037190 CM091760.1 scaffold30 99.28 True indel: indel (<= 5bp) 13787585 13788354 1037191 1037960 CM091760.1 scaffold30 99.74 True indel: indel (<= 5bp) 13788356 13788941 1037961 1038546 CM091760.1 scaffold30 98.81 True local misassembly 13790494 13791213 1040109 1040828 CM091760.1 scaffold30 100.0 True indel: indel (> 5bp) 13791656 13792560 1041283 1042187 CM091760.1 scaffold30 99.56 True indel: indel (<= 5bp) 13792675 13796301 1042303 1045941 CM091760.1 scaffold30 99.15 True indel: indel (> 5bp) 13796353 13835084 1046006 1085399 CM091760.1 scaffold30 97.77 True local misassembly 13834236 13835892 1085411 1086949 CM091760.1 scaffold30 98.27 True local misassembly 13836409 13871798 1087509 1124177 CM091760.1 scaffold30 96.88 True local misassembly 13871281 13875078 1124178 1127973 CM091760.1 scaffold30 99.63 True fake: scaffold gap size wrong estimation (local) 13875138 13924601 1128116 1177825 CM091760.1 scaffold30 98.38 True indel: indel (> 5bp) 13924682 14025609 1177926 1281098 CM091760.1 scaffold30 97.04 True indel: stretch of mismatches 14025645 14036414 1281134 1291916 CM091760.1 scaffold30 99.57 True local misassembly 14036907 14039255 1292762 1295118 CM091760.1 scaffold30 97.97 True indel: indel (> 5bp) 14039443 14046548 1295314 1302501 CM091760.1 scaffold30 96.31 True indel: indel (> 5bp) 14046658 14106321 1302626 1362211 CM091760.1 scaffold30 99.09 True indel: indel (> 5bp) 14106363 14287579 1362260 1543548 CM091760.1 scaffold30 98.46 True fake: scaffold gap size wrong estimation (local) 14287752 14289204 1545384 1546856 CM091760.1 scaffold30 99.37 True fake: scaffold gap size wrong estimation (local) 14289742 14300052 1547872 1558206 CM091760.1 scaffold30 99.17 True fake: scaffold gap size wrong estimation (local) 14300362 14302719 1558747 1561129 CM091760.1 scaffold30 97.45 True fake: scaffold gap size wrong estimation (local) 14303304 14307259 1562246 1566242 CM091760.1 scaffold30 97.86 True fake: scaffold gap size wrong estimation (local) 14307629 14308394 1566559 1567360 CM091760.1 scaffold30 96.89 True fake: scaffold gap size wrong estimation (local) 14308496 14372949 1567476 1634944 CM091760.1 scaffold30 98.15 True fake: scaffold gap size wrong estimation (local) 14373217 14619507 1636128 1886044 CM091760.1 scaffold30 99.5 True fake: scaffold gap size wrong estimation (local) 14619597 14642788 1887137 1910323 CM091760.1 scaffold30 99.67 True indel: indel (> 5bp) 14642945 14710877 1910539 1978363 CM091760.1 scaffold30 99.51 True local misassembly 14711314 14874149 1979111 2142668 CM091760.1 scaffold30 99.66 True fake: scaffold gap size wrong estimation (local) 14874345 15031294 2143246 2302559 CM091760.1 scaffold30 98.29 True local misassembly 15030164 15084626 2302584 2359684 CM091760.1 scaffold30 98.21 True local misassembly 15084727 15106655 2361904 2383853 CM091760.1 scaffold30 99.85 True relocation, inconsistency = 8597 15115253 15120918 2383854 2389513 CM091760.1 scaffold30 99.7 True CONTIG scaffold30 2389513 misassembled 11204225 11216693 1 12913 CM091766.1 scaffold72 96.06 True indel: indel (> 5bp) 11216818 11251474 13100 48165 CM091766.1 scaffold72 98.61 True local misassembly 11251390 11288754 48624 86077 CM091766.1 scaffold72 99.49 True translocation 17320401 17321317 86128 87044 CM091752.1 scaffold72 99.24 True CONTIG scaffold72 87821 misassembled CONTIG scaffold74 494 unaligned 15536027 15545011 1 9067 CM091757.1 scaffold73 99.01 True fake: not a misassembly (possible transposable element) 6382905 6383908 9068 10071 CM091768.1 scaffold73 100.0 True fake: not a misassembly (possible transposable element) 15545467 15547168 10072 11843 CM091757.1 scaffold73 96.4 True fake: scaffold gap size wrong estimation (local) 15548003 15549319 13155 14470 CM091757.1 scaffold73 99.85 True indel: indel (> 5bp) 15549394 15549898 14554 15074 CM091757.1 scaffold73 95.35 True CONTIG scaffold73 15074 correct CONTIG scaffold75 737 unaligned CONTIG scaffold77 642 unaligned CONTIG scaffold78 4403 unaligned 2877957 2878554 1 598 CM091762.1 scaffold79 100.0 True CONTIG scaffold79 3755 correct 1010587 1064842 55125 1 CM091764.1 scaffold80 98.76 True fake: scaffold gap size wrong estimation (local) 978463 1010482 87968 55501 CM091764.1 scaffold80 99.38 True local misassembly 972350 978029 93845 88132 CM091764.1 scaffold80 99.28 True fake: scaffold gap size wrong estimation (local) 960498 969143 105562 96918 CM091764.1 scaffold80 99.88 True CONTIG scaffold80 105593 correct 4931217 4932568 1253 2604 CM091768.1 scaffold81 99.78 True fake: scaffold gap size wrong estimation (local) 4932418 4934385 3576 5629 CM091768.1 scaffold81 98.78 True CONTIG scaffold81 5629 correct 3583189 3592493 5669 15001 CM091753.1 scaffold76 99.52 True fake: scaffold gap size wrong estimation (local) 3594214 3614438 16100 38102 CM091753.1 scaffold76 99.28 True fake: scaffold gap size wrong estimation (local) 3614821 3679808 38656 103486 CM091753.1 scaffold76 99.52 True fake: scaffold gap size wrong estimation (local) 3679907 3744427 103605 170099 CM091753.1 scaffold76 98.75 True indel: indel (> 5bp) 3744543 3858774 170145 286266 CM091753.1 scaffold76 99.52 True indel: indel (> 5bp) 3858851 3899569 286365 327175 CM091753.1 scaffold76 99.21 True local misassembly 3900132 3967521 327912 395566 CM091753.1 scaffold76 99.84 True fake: scaffold gap size wrong estimation (local) 3967082 3969487 396351 398723 CM091753.1 scaffold76 98.55 True local misassembly 3969819 4045617 399255 475412 CM091753.1 scaffold76 99.17 True indel: indel (> 5bp) 4045650 4059977 475455 489800 CM091753.1 scaffold76 99.04 True indel: indel (<= 5bp) 4060013 4062251 489840 492085 CM091753.1 scaffold76 99.24 True CONTIG scaffold76 492680 correct 717765 720148 2405 1 CM091753.1 scaffold63 98.71 True local misassembly 707149 718394 13656 2411 CM091753.1 scaffold63 99.94 True indel: indel (> 5bp) 651783 707042 70119 13781 CM091753.1 scaffold63 97.92 True fake: scaffold gap size wrong estimation (local) 644797 651633 77368 70533 CM091753.1 scaffold63 99.95 True relocation, inconsistency = 14058 442135 630738 266371 77369 CM091753.1 scaffold63 99.54 True fake: scaffold gap size wrong estimation (local) 374817 439428 336164 269749 CM091753.1 scaffold63 97.94 True fake: scaffold gap size wrong estimation (local) 370117 374496 340900 336519 CM091753.1 scaffold63 99.89 True fake: scaffold gap size wrong estimation (local) 276399 370014 437730 342291 CM091753.1 scaffold63 98.95 True local misassembly 274335 275841 440019 438513 CM091753.1 scaffold63 99.93 True CONTIG scaffold63 440301 misassembled CONTIG scaffold84 1434 unaligned 2445656 2446368 4601 5343 CM091760.1 scaffold83 95.15 True unknown 2745332 2745869 7217 6692 CM091755.1 scaffold83 95.72 True unknown 2450833 2451437 10265 10872 CM091760.1 scaffold83 99.51 True unknown CONTIG scaffold83 10872 mis_unaligned CONTIG scaffold86 388 unaligned CONTIG scaffold87 304 unaligned 13102393 13103029 1 638 CM091757.1 scaffold67 99.53 True fake: scaffold gap size wrong estimation (local) 13103156 13159873 817 56937 CM091757.1 scaffold67 97.13 True translocation 8897195 8899113 56938 58857 CM091752.1 scaffold67 99.95 True translocation 13195665 13198633 64483 61517 CM091757.1 scaffold67 99.93 True local misassembly 13186166 13195624 74789 65331 CM091757.1 scaffold67 99.99 True fake: scaffold gap size wrong estimation (local) 13176538 13185929 84847 75454 CM091757.1 scaffold67 99.95 True fake: not a misassembly (possible transposable element) 13176538 13177042 85250 85756 CM091757.1 scaffold67 99.61 True fake: not a misassembly (possible transposable element) 13167561 13176484 94682 85757 CM091757.1 scaffold67 99.92 True relocation, inconsistency = 24020 13206240 13268902 100418 163298 CM091757.1 scaffold67 99.39 True local misassembly 13269083 13471672 163304 369211 CM091757.1 scaffold67 99.0 True fake: scaffold gap size wrong estimation (local) 13472060 13473955 369767 371680 CM091757.1 scaffold67 99.06 True fake: scaffold gap size wrong estimation (local) 13474178 13532316 373117 431727 CM091757.1 scaffold67 99.37 True indel: indel (> 5bp) 13532351 13620905 431770 522340 CM091757.1 scaffold67 97.58 True fake: scaffold gap size wrong estimation (local) 13621198 13761341 522869 664283 CM091757.1 scaffold67 99.03 True fake: scaffold gap size wrong estimation (local) 13761897 13874249 664398 777369 CM091757.1 scaffold67 98.9 True local misassembly 13874502 13897922 778002 801437 CM091757.1 scaffold67 99.63 True indel: indel (<= 5bp) 13897971 13970115 801484 873909 CM091757.1 scaffold67 99.42 True fake: scaffold gap size wrong estimation (local) 13970347 13971352 874520 875527 CM091757.1 scaffold67 99.8 True fake: scaffold gap size wrong estimation (local) 13971545 14064248 876632 971229 CM091757.1 scaffold67 98.25 True local misassembly 14063552 14067176 971246 974857 CM091757.1 scaffold67 99.34 True fake: scaffold gap size wrong estimation (local) 14067174 14165213 975382 1074971 CM091757.1 scaffold67 99.03 True local misassembly 14165514 14180251 1075407 1090104 CM091757.1 scaffold67 99.28 True indel: indel (<= 5bp) 14180362 14443124 1090216 1354072 CM091757.1 scaffold67 99.7 True fake: scaffold gap size wrong estimation (local) 14443288 14455889 1354242 1366890 CM091757.1 scaffold67 98.95 True CONTIG scaffold67 1366910 misassembled 15964195 15966046 1 1861 CM091757.1 scaffold89 99.14 True CONTIG scaffold89 1861 correct 4724952 4730173 1 5335 CM091768.1 scaffold90 97.79 True fake: not a misassembly (possible transposable element) 4746605 4749289 5529 8217 CM091768.1 scaffold90 99.78 True fake: not a misassembly (possible transposable element) 4730174 4731670 8218 9714 CM091768.1 scaffold90 99.96 True indel: stretch of mismatches 4731721 4735129 9765 13174 CM091768.1 scaffold90 99.68 True indel: indel (<= 5bp) 4735204 4740819 13252 18853 CM091768.1 scaffold90 99.08 True fake: scaffold gap size wrong estimation (local) 4743665 4746374 22449 25139 CM091768.1 scaffold90 99.3 True fake: scaffold gap size wrong estimation (local) 4747057 4749482 26220 28650 CM091768.1 scaffold90 99.79 True fake: scaffold gap size wrong estimation (local) 4749589 4755146 28751 34337 CM091768.1 scaffold90 99.45 True fake: scaffold gap size wrong estimation (local) 4757412 4758103 35779 36470 CM091768.1 scaffold90 100.0 True fake: scaffold gap size wrong estimation (local) 4758625 4761231 37555 40195 CM091768.1 scaffold90 98.67 True local misassembly 4761450 4765303 40714 44566 CM091768.1 scaffold90 99.9 True fake: scaffold gap size wrong estimation (local) 4765414 4772868 44953 52419 CM091768.1 scaffold90 99.95 True indel: stretch of mismatches 4772869 4795245 52420 75507 CM091768.1 scaffold90 96.89 True local misassembly 4801146 4816108 75872 90826 CM091768.1 scaffold90 99.92 True fake: scaffold gap size wrong estimation (local) 4816374 4817350 91791 92767 CM091768.1 scaffold90 96.88 True CONTIG scaffold90 92767 correct 1401833 1402780 967 1 CM091761.1 scaffold82 97.58 True fake: not a misassembly (possible transposable element) 51021 51749 1696 968 CM091753.1 scaffold82 100.0 True fake: not a misassembly (possible transposable element) 1355598 1401040 47830 2360 CM091761.1 scaffold82 99.69 True local misassembly 1148881 1355446 255787 48326 CM091761.1 scaffold82 99.48 True local misassembly 1064118 1149756 342469 256243 CM091761.1 scaffold82 99.02 True local misassembly 941344 1063785 467034 342640 CM091761.1 scaffold82 99.66 True fake: scaffold gap size wrong estimation (local) 903106 941507 506280 467887 CM091761.1 scaffold82 99.8 True fake: scaffold gap size wrong estimation (local) 884050 903018 525473 506496 CM091761.1 scaffold82 99.85 True relocation, inconsistency = -18939 884080 885332 525474 526726 CM091761.1 scaffold82 100.0 True inversion 787812 884017 625576 526727 CM091761.1 scaffold82 98.55 True CONTIG scaffold82 625576 misassembled 18869710 18871745 2059 1 CM091751.1 scaffold92 95.03 True fake: scaffold gap size wrong estimation (local) 18850331 18870325 22768 2622 CM091751.1 scaffold92 97.56 True indel: indel (> 5bp) 18844522 18850255 28593 22862 CM091751.1 scaffold92 97.16 True local misassembly 18832142 18843772 40625 29407 CM091751.1 scaffold92 95.43 True fake: scaffold gap size wrong estimation (local) 18830352 18831938 42489 40901 CM091751.1 scaffold92 98.87 True local misassembly 18828510 18830994 44973 42490 CM091751.1 scaffold92 99.28 True local misassembly 18810008 18828087 63969 45869 CM091751.1 scaffold92 98.39 True fake: scaffold gap size wrong estimation (local) 18780139 18808497 93813 65708 CM091751.1 scaffold92 97.55 True CONTIG scaffold92 93813 correct CONTIG scaffold93 369 unaligned 6455687 6472525 17286 1 CM091768.1 scaffold94 97.25 True indel: indel (> 5bp) 6445748 6455618 27327 17391 CM091768.1 scaffold94 99.18 True CONTIG scaffold94 27327 correct 4292929 4294724 1796 1 CM091754.1 scaffold95 99.11 True CONTIG scaffold95 3646 correct 15305586 15306182 597 1 CM091752.1 scaffold96 99.66 True CONTIG scaffold96 597 correct 13425316 13437048 1 12110 CM091759.1 scaffold49 98.67 True indel: indel (> 5bp) 13437090 13511636 12202 89844 CM091759.1 scaffold49 97.7 True indel: indel (> 5bp) 13511674 13577970 89894 158360 CM091759.1 scaffold49 98.45 True indel: indel (> 5bp) 13578084 13613190 158524 193437 CM091759.1 scaffold49 99.08 True indel: indel (<= 5bp) 13613206 13725670 193458 306533 CM091759.1 scaffold49 99.15 True local misassembly 13724921 13840248 306575 424167 CM091759.1 scaffold49 99.31 True indel: indel (> 5bp) 13840312 13923901 424262 508959 CM091759.1 scaffold49 98.33 True indel: indel (> 5bp) 13924055 14023650 509143 609563 CM091759.1 scaffold49 98.13 True indel: indel (> 5bp) 14023678 14036764 609612 622708 CM091759.1 scaffold49 99.34 True local misassembly 14035987 14045052 622709 631783 CM091759.1 scaffold49 99.6 True indel: indel (> 5bp) 14045105 14064392 631826 651153 CM091759.1 scaffold49 99.33 True local misassembly 14063493 14087536 651154 675139 CM091759.1 scaffold49 99.0 True indel: indel (> 5bp) 14087620 14101366 675242 689240 CM091759.1 scaffold49 98.97 True fake: not a misassembly (possible transposable element) 5965618 5966234 689241 689858 CM091767.1 scaffold49 99.84 True fake: not a misassembly (possible transposable element) 14101337 14224823 689859 815693 CM091759.1 scaffold49 98.96 True local misassembly 14224070 14496402 815695 1092519 CM091759.1 scaffold49 99.39 True local misassembly 14495282 14721807 1092520 1324645 CM091759.1 scaffold49 98.87 True local misassembly 14722501 14828906 1325364 1434810 CM091759.1 scaffold49 99.49 True fake: scaffold gap size wrong estimation (local) 14829040 14845085 1435146 1451209 CM091759.1 scaffold49 99.62 True fake: scaffold gap size wrong estimation (local) 14845139 14900186 1451272 1506868 CM091759.1 scaffold49 99.52 True indel: indel (> 5bp) 14900333 14918857 1507003 1526141 CM091759.1 scaffold49 99.28 True fake: scaffold gap size wrong estimation (local) 14918987 15019930 1527474 1633687 CM091759.1 scaffold49 99.49 True fake: scaffold gap size wrong estimation (local) 15020022 15218803 1634539 1844445 CM091759.1 scaffold49 98.33 True fake: scaffold gap size wrong estimation (local) 15219586 15253362 1846231 1881527 CM091759.1 scaffold49 96.93 True fake: scaffold gap size wrong estimation (local) 15253885 15264842 1882425 1893838 CM091759.1 scaffold49 99.52 True fake: scaffold gap size wrong estimation (local) 15264972 15360911 1894588 1994392 CM091759.1 scaffold49 99.31 True fake: scaffold gap size wrong estimation (local) 15361051 15476828 1995915 2113611 CM091759.1 scaffold49 98.66 True fake: scaffold gap size wrong estimation (local) 15476925 15512480 2113710 2150019 CM091759.1 scaffold49 98.5 True fake: scaffold gap size wrong estimation (local) 15512936 15517101 2152547 2156630 CM091759.1 scaffold49 97.89 True fake: scaffold gap size wrong estimation (local) 15518291 15591990 2157300 2231626 CM091759.1 scaffold49 99.56 True CONTIG scaffold49 2232240 correct CONTIG scaffold98 479 unaligned 10631941 10825912 202492 43 CM091754.1 scaffold88 99.55 True fake: scaffold gap size wrong estimation (local) 10620213 10631833 216449 203437 CM091754.1 scaffold88 97.32 True local misassembly 10543404 10622257 298567 216450 CM091754.1 scaffold88 99.5 True local misassembly 10111985 10545251 745333 298568 CM091754.1 scaffold88 99.19 True local misassembly 9986559 10111953 872981 745637 CM091754.1 scaffold88 99.26 True indel: indel (> 5bp) 9889259 9986462 972482 873098 CM091754.1 scaffold88 98.75 True indel: indel (> 5bp) 9823277 9889171 1038908 972556 CM091754.1 scaffold88 98.54 True indel: indel (> 5bp) 9580649 9823069 1283463 1039157 CM091754.1 scaffold88 99.07 True indel: indel (> 5bp) 9407800 9580556 1459682 1283617 CM091754.1 scaffold88 99.36 True indel: indel (> 5bp) 9385722 9407619 1481655 1459806 CM091754.1 scaffold88 99.22 True indel: indel (> 5bp) 9136954 9385659 1740708 1481699 CM091754.1 scaffold88 99.29 True CONTIG scaffold88 1740708 correct 3311555 3331454 1 19910 CM091760.1 scaffold91 99.18 True fake: scaffold gap size wrong estimation (local) 3331156 3371202 20291 61009 CM091760.1 scaffold91 98.93 True fake: scaffold gap size wrong estimation (local) 3371328 3408187 62211 100276 CM091760.1 scaffold91 99.26 True fake: scaffold gap size wrong estimation (local) 3407427 3531764 100795 227971 CM091760.1 scaffold91 98.66 True indel: indel (> 5bp) 3531823 3715491 228048 412666 CM091760.1 scaffold91 99.03 True CONTIG scaffold91 412666 correct 13711807 13715170 3392 1 CM091755.1 scaffold101 98.97 True CONTIG scaffold101 3392 correct 2927319 2936948 9694 1 CM091752.1 scaffold102 99.15 True CONTIG scaffold102 9694 correct 1266879 1267878 998 1 CM091763.1 scaffold65 98.8 True fake: scaffold gap size wrong estimation (local) 1265021 1265613 3822 3230 CM091763.1 scaffold65 100.0 True inversion 1268828 1269456 3834 4462 CM091763.1 scaffold65 99.68 True relocation, scaffold gap is present, inconsistency = 8056 761949 1259052 507765 6182 CM091763.1 scaffold65 99.49 True fake: scaffold gap size wrong estimation (local) 664316 761866 610845 508880 CM091763.1 scaffold65 97.34 True fake: scaffold gap size wrong estimation (local) 591049 664032 683760 611588 CM091763.1 scaffold65 98.27 True local misassembly 422183 590571 856622 684632 CM091763.1 scaffold65 99.59 True local misassembly 378812 423162 901365 856634 CM091763.1 scaffold65 98.95 True fake: scaffold gap size wrong estimation (local) 375823 378601 904614 901823 CM091763.1 scaffold65 99.07 True fake: scaffold gap size wrong estimation (local) 373975 375726 907140 905372 CM091763.1 scaffold65 99.88 True fake: scaffold gap size wrong estimation (local) 372863 374864 909389 907375 CM091763.1 scaffold65 99.31 True fake: scaffold gap size wrong estimation (local) 370732 372488 912116 910362 CM091763.1 scaffold65 99.77 True CONTIG scaffold65 912155 misassembled CONTIG scaffold104 393 unaligned 15199885 15256393 245 58837 CM091755.1 scaffold56 96.45 True indel: indel (<= 5bp) 15256440 15283677 58881 86553 CM091755.1 scaffold56 98.33 True fake: scaffold gap size wrong estimation (local) 15283891 15288399 87152 91663 CM091755.1 scaffold56 99.73 True indel: indel (> 5bp) 15288626 15594370 91829 400262 CM091755.1 scaffold56 98.79 True fake: scaffold gap size wrong estimation (local) 15594145 15610091 401129 417404 CM091755.1 scaffold56 99.37 True fake: scaffold gap size wrong estimation (local) 15610389 15860313 417990 671119 CM091755.1 scaffold56 98.91 True fake: scaffold gap size wrong estimation (local) 15860459 15962028 671313 775015 CM091755.1 scaffold56 99.13 True local misassembly 15960601 15991735 775016 806552 CM091755.1 scaffold56 97.87 True local misassembly 15990871 16098900 806553 916771 CM091755.1 scaffold56 98.7 True fake: scaffold gap size wrong estimation (local) 16098871 16136691 917629 955966 CM091755.1 scaffold56 99.73 True local misassembly 16135423 16138652 955972 959191 CM091755.1 scaffold56 98.98 True indel: indel (> 5bp) 16138681 16141725 959234 962263 CM091755.1 scaffold56 99.38 True fake: scaffold gap size wrong estimation (local) 16141783 16206648 963309 1028547 CM091755.1 scaffold56 98.78 True local misassembly 16205773 16263540 1028562 1089765 CM091755.1 scaffold56 97.92 True indel: indel (> 5bp) 16263593 16686779 1089827 1519694 CM091755.1 scaffold56 99.15 True local misassembly 16686956 16753066 1519718 1586999 CM091755.1 scaffold56 98.85 True fake: not a misassembly (possible transposable element) 18476301 18476910 1587672 1587061 CM091753.1 scaffold56 99.67 True fake: not a misassembly (possible transposable element) 16753170 16781237 1587673 1617159 CM091755.1 scaffold56 97.65 True fake: scaffold gap size wrong estimation (local) 16781386 16802154 1618175 1638923 CM091755.1 scaffold56 99.64 True fake: not a misassembly (possible transposable element) 16801622 16802154 1639492 1638962 CM091755.1 scaffold56 99.44 True fake: not a misassembly (possible transposable element) 16802218 16808569 1639493 1646580 CM091755.1 scaffold56 99.81 True fake: scaffold gap size wrong estimation (local) 16808877 16846375 1647786 1685525 CM091755.1 scaffold56 97.55 True local misassembly 16846485 16848014 1685979 1687514 CM091755.1 scaffold56 99.34 True fake: scaffold gap size wrong estimation (local) 16848154 16868795 1688586 1710452 CM091755.1 scaffold56 96.34 True local misassembly 16867969 16893667 1710453 1736611 CM091755.1 scaffold56 98.08 True fake: scaffold gap size wrong estimation (local) 16894432 16908150 1738004 1751713 CM091755.1 scaffold56 99.49 True CONTIG scaffold56 1751713 correct CONTIG scaffold106 445 unaligned 3667758 3669869 3939 6050 CM091764.1 scaffold105 99.57 True indel: indel (<= 5bp) 3669871 3671160 6051 7340 CM091764.1 scaffold105 99.77 True indel: indel (<= 5bp) 3671161 3674149 7342 10330 CM091764.1 scaffold105 99.97 True indel: indel (<= 5bp) 3674150 3675802 10332 11984 CM091764.1 scaffold105 99.76 True local misassembly 3679495 3682270 11985 14760 CM091764.1 scaffold105 99.75 True indel: indel (<= 5bp) 3682585 3683348 15077 15840 CM091764.1 scaffold105 99.87 True indel: indel (<= 5bp) 3683358 3683905 15848 16395 CM091764.1 scaffold105 100.0 True fake: scaffold gap size wrong estimation (local) 3684566 3688101 17133 20668 CM091764.1 scaffold105 99.92 True local misassembly 3689178 3690102 21747 22671 CM091764.1 scaffold105 100.0 True indel: indel (<= 5bp) 3690404 3692279 22976 24851 CM091764.1 scaffold105 99.95 True indel: indel (<= 5bp) 3692280 3693286 24853 25859 CM091764.1 scaffold105 99.3 True indel: indel (> 5bp) 3693745 3694350 26301 26906 CM091764.1 scaffold105 100.0 True local misassembly 3694866 3697539 27424 30097 CM091764.1 scaffold105 99.93 True indel: indel (<= 5bp) 3697541 3699502 30098 32059 CM091764.1 scaffold105 100.0 True indel: stretch of mismatches 3699661 3700309 32218 32866 CM091764.1 scaffold105 99.23 True indel: indel (> 5bp) 3700315 3703705 32909 36299 CM091764.1 scaffold105 99.68 True indel: indel (<= 5bp) 3703707 3705133 36300 37726 CM091764.1 scaffold105 99.79 True indel: indel (<= 5bp) 3705224 3707216 37819 39811 CM091764.1 scaffold105 99.95 True indel: indel (<= 5bp) 3707218 3708396 39812 40990 CM091764.1 scaffold105 100.0 True indel: indel (<= 5bp) 3708397 3711026 40992 43621 CM091764.1 scaffold105 99.85 True indel: indel (> 5bp) 3711027 3712868 43632 45473 CM091764.1 scaffold105 99.78 True indel: indel (<= 5bp) 3713083 3716631 45690 49238 CM091764.1 scaffold105 99.89 True indel: indel (> 5bp) 3716641 3718572 49239 51170 CM091764.1 scaffold105 99.79 True indel: indel (<= 5bp) 3718573 3719543 51172 52142 CM091764.1 scaffold105 99.49 True indel: indel (> 5bp) 3719590 3758755 52216 91393 CM091764.1 scaffold105 99.7 True local misassembly 3759550 3772397 92216 104795 CM091764.1 scaffold105 96.94 True indel: indel (> 5bp) 3772519 3796467 104975 129416 CM091764.1 scaffold105 99.11 True fake: scaffold gap size wrong estimation (local) 3796565 3900942 129509 234521 CM091764.1 scaffold105 99.44 True indel: indel (> 5bp) 3901223 3902740 234846 236370 CM091764.1 scaffold105 99.34 True indel: indel (<= 5bp) 3902908 3926330 236534 259969 CM091764.1 scaffold105 99.15 True fake: scaffold gap size wrong estimation (local) 3926493 3944798 260166 278681 CM091764.1 scaffold105 98.35 True local misassembly 3946308 3955083 279197 287976 CM091764.1 scaffold105 99.73 True fake: scaffold gap size wrong estimation (local) 3955847 3957038 289293 290495 CM091764.1 scaffold105 97.26 True local misassembly 3957107 3975830 291206 310391 CM091764.1 scaffold105 97.39 True local misassembly 3975233 3975747 310409 310938 CM091764.1 scaffold105 95.49 True local misassembly 3976390 4121120 311941 457253 CM091764.1 scaffold105 99.64 True CONTIG scaffold105 457253 correct 16207974 16309874 102213 1 CM091756.1 scaffold103 99.78 True fake: scaffold gap size wrong estimation (local) 16177346 16207760 133604 103206 CM091756.1 scaffold103 99.69 True indel: indel (> 5bp) 16108143 16177290 204197 133690 CM091756.1 scaffold103 99.61 True fake: scaffold gap size wrong estimation (local) 16025326 16108027 288594 204964 CM091756.1 scaffold103 99.83 True fake: scaffold gap size wrong estimation (local) 15937653 16025243 379461 289505 CM091756.1 scaffold103 98.33 True fake: scaffold gap size wrong estimation (local) 15912835 15937266 404938 380036 CM091756.1 scaffold103 99.76 True fake: scaffold gap size wrong estimation (local) 15911709 15912613 406546 405636 CM091756.1 scaffold103 98.36 True local misassembly 15276918 15911526 1046995 406847 CM091756.1 scaffold103 99.13 True indel: indel (> 5bp) 15268273 15276853 1055607 1047035 CM091756.1 scaffold103 99.62 True local misassembly 15260942 15269049 1063719 1055612 CM091756.1 scaffold103 99.35 True fake: scaffold gap size wrong estimation (local) 15237787 15261061 1087532 1064252 CM091756.1 scaffold103 99.63 True indel: indel (<= 5bp) 15200578 15237703 1124756 1087614 CM091756.1 scaffold103 99.68 True fake: scaffold gap size wrong estimation (local) 15024528 15197441 1300676 1127299 CM091756.1 scaffold103 99.17 True fake: scaffold gap size wrong estimation (local) 15022114 15023207 1303777 1302684 CM091756.1 scaffold103 99.82 True CONTIG scaffold103 1303948 correct CONTIG scaffold109 340 unaligned CONTIG scaffold110 305 unaligned 4697495 4723825 26625 1 CM091768.1 scaffold111 98.87 True CONTIG scaffold111 26625 correct 12619204 12620761 4815 3259 CM091757.1 scaffold33 99.94 True fake: scaffold gap size wrong estimation (local) 12543188 12619003 82131 6277 CM091757.1 scaffold33 99.92 True local misassembly 12450579 12542376 176384 83566 CM091757.1 scaffold33 98.07 True fake: scaffold gap size wrong estimation (local) 12332789 12450560 294447 176715 CM091757.1 scaffold33 99.49 True fake: scaffold gap size wrong estimation (local) 12174204 12332635 455939 295931 CM091757.1 scaffold33 98.72 True indel: indel (> 5bp) 12091846 12174086 538434 456103 CM091757.1 scaffold33 99.54 True indel: indel (> 5bp) 11890132 12091815 743741 538483 CM091757.1 scaffold33 97.25 True fake: scaffold gap size wrong estimation (local) 11870537 11889693 763784 744643 CM091757.1 scaffold33 99.55 True indel: indel (> 5bp) 11869462 11870403 764805 763864 CM091757.1 scaffold33 99.58 True local misassembly 11777191 11870403 859927 764818 CM091757.1 scaffold33 99.24 True fake: scaffold gap size wrong estimation (local) 11715313 11776839 923807 860322 CM091757.1 scaffold33 98.61 True indel: indel (> 5bp) 11708738 11715237 930413 923910 CM091757.1 scaffold33 99.63 True fake: scaffold gap size wrong estimation (local) 11673866 11708083 967009 931470 CM091757.1 scaffold33 99.62 True fake: scaffold gap size wrong estimation (local) 11601739 11673351 1043318 967526 CM091757.1 scaffold33 99.46 True fake: scaffold gap size wrong estimation (local) 11521440 11601492 1125733 1044220 CM091757.1 scaffold33 99.18 True indel: indel (<= 5bp) 11442515 11521137 1205690 1126040 CM091757.1 scaffold33 99.44 True indel: indel (> 5bp) 11325459 11442491 1324922 1205747 CM091757.1 scaffold33 99.09 True indel: indel (<= 5bp) 11216989 11325413 1435125 1324966 CM091757.1 scaffold33 99.54 True local misassembly 10773203 11216418 1889928 1435745 CM091757.1 scaffold33 99.27 True relocation, inconsistency = 46321 10717568 10719662 1899257 1897148 CM091757.1 scaffold33 98.58 True indel: indel (> 5bp) 10630593 10717513 1986208 1899302 CM091757.1 scaffold33 99.43 True local misassembly 10331757 10631821 2289508 1986217 CM091757.1 scaffold33 99.32 True local misassembly 10258782 10332368 2363597 2289509 CM091757.1 scaffold33 99.39 True local misassembly 10222873 10258741 2400798 2364308 CM091757.1 scaffold33 99.41 True indel: indel (> 5bp) 10031410 10222651 2594006 2400992 CM091757.1 scaffold33 98.76 True fake: scaffold gap size wrong estimation (local) 9965430 10031274 2661835 2594728 CM091757.1 scaffold33 98.4 True local misassembly 9896840 9966013 2731523 2661861 CM091757.1 scaffold33 99.47 True indel: indel (> 5bp) 9858621 9896730 2769663 2731574 CM091757.1 scaffold33 99.38 True local misassembly 9749741 9859997 2880331 2769664 CM091757.1 scaffold33 99.53 True local misassembly 9583210 9749646 3049438 2880712 CM091757.1 scaffold33 98.86 True local misassembly 9460920 9583057 3173167 3049923 CM091757.1 scaffold33 99.5 True indel: indel (> 5bp) 9129579 9460879 3507895 3173223 CM091757.1 scaffold33 98.93 True fake: scaffold gap size wrong estimation (local) 8977057 9129362 3662255 3508295 CM091757.1 scaffold33 99.28 True indel: indel (> 5bp) 8917975 8976973 3721208 3662322 CM091757.1 scaffold33 99.24 True indel: indel (> 5bp) 8752957 8917925 3887495 3721289 CM091757.1 scaffold33 99.08 True local misassembly 8635203 8749248 4001508 3887496 CM091757.1 scaffold33 99.48 True indel: indel (> 5bp) 8460586 8635093 4176610 4001598 CM091757.1 scaffold33 99.32 True indel: indel (> 5bp) 8420702 8460521 4217432 4176681 CM091757.1 scaffold33 99.04 True indel: indel (> 5bp) 8285554 8420679 4352970 4217478 CM091757.1 scaffold33 99.33 True indel: indel (> 5bp) 8268377 8285458 4370180 4353081 CM091757.1 scaffold33 99.14 True indel: indel (> 5bp) 8190601 8268335 4448792 4370209 CM091757.1 scaffold33 98.61 True local misassembly 8174830 8190555 4464902 4449169 CM091757.1 scaffold33 99.49 True indel: indel (> 5bp) 7998832 8174793 4642555 4464985 CM091757.1 scaffold33 99.05 True indel: indel (<= 5bp) 7996227 7998788 4645178 4642600 CM091757.1 scaffold33 98.45 True fake: scaffold gap size wrong estimation (local) 7964335 7996434 4678224 4646157 CM091757.1 scaffold33 99.23 True relocation, inconsistency = 29438 7912816 7934546 4700367 4678575 CM091757.1 scaffold33 99.02 True local misassembly 7898181 7912637 4714940 4700657 CM091757.1 scaffold33 97.3 True indel: indel (> 5bp) 7864931 7898019 4748143 4715059 CM091757.1 scaffold33 99.25 True fake: not a misassembly (possible transposable element) 7864204 7864723 4748335 4748854 CM091757.1 scaffold33 99.81 True fake: not a misassembly (possible transposable element) 7839178 7864782 4774585 4748900 CM091757.1 scaffold33 99.18 True relocation, inconsistency = -25514 7839288 7839946 4774605 4775261 CM091757.1 scaffold33 99.39 True inversion 7756385 7839073 4858280 4775266 CM091757.1 scaffold33 99.26 True fake: scaffold gap size wrong estimation (local) 7675471 7756028 4940980 4859523 CM091757.1 scaffold33 97.81 True fake: scaffold gap size wrong estimation (local) 7620953 7675375 4996289 4941861 CM091757.1 scaffold33 98.93 True local misassembly 7619346 7620428 4997372 4996290 CM091757.1 scaffold33 99.35 True indel: indel (<= 5bp) 7618288 7619154 4998427 4997561 CM091757.1 scaffold33 99.77 True indel: indel (<= 5bp) 7615557 7618285 5001156 4998428 CM091757.1 scaffold33 99.52 True indel: indel (<= 5bp) 7614003 7615556 5002713 5001160 CM091757.1 scaffold33 99.55 True indel: indel (<= 5bp) 7613374 7613901 5003338 5002811 CM091757.1 scaffold33 99.43 True indel: indel (<= 5bp) 7612374 7613363 5004340 5003351 CM091757.1 scaffold33 99.19 True indel: indel (> 5bp) 7611330 7612357 5005368 5004341 CM091757.1 scaffold33 98.74 True indel: indel (> 5bp) 7610669 7611329 5006046 5005386 CM091757.1 scaffold33 98.94 True local misassembly 7578707 7609246 5038443 5007650 CM091757.1 scaffold33 97.83 True indel: indel (> 5bp) 7542668 7578610 5074408 5038527 CM091757.1 scaffold33 99.05 True local misassembly 7511673 7542065 5105756 5075011 CM091757.1 scaffold33 98.89 True fake: not a misassembly (possible transposable element) 370425 371127 5106464 5105757 CM091759.1 scaffold33 98.93 True fake: not a misassembly (possible transposable element) 7506422 7511609 5111660 5106465 CM091757.1 scaffold33 99.13 True indel: indel (> 5bp) 7504525 7506402 5113563 5111673 CM091757.1 scaffold33 98.57 True local misassembly 7409689 7505183 5209382 5113583 CM091757.1 scaffold33 99.41 True local misassembly 7404789 7409193 5214787 5210379 CM091757.1 scaffold33 99.71 True local misassembly 7285025 7404212 5337445 5215912 CM091757.1 scaffold33 98.5 True indel: indel (<= 5bp) 7282958 7284970 5339565 5337502 CM091757.1 scaffold33 97.0 True indel: indel (> 5bp) 7245267 7282821 5377247 5339747 CM091757.1 scaffold33 98.29 True indel: indel (<= 5bp) 7178529 7245181 5445014 5377330 CM091757.1 scaffold33 96.92 True indel: indel (> 5bp) 7157485 7178469 5466090 5445085 CM091757.1 scaffold33 99.63 True CONTIG scaffold33 5466090 misassembled 4205880 4207798 1962 1 CM091768.1 scaffold113 97.25 True CONTIG scaffold113 2017 correct 5188428 5189236 1 809 CM091768.1 scaffold114 99.01 True indel: indel (> 5bp) 5189309 5193513 891 5140 CM091768.1 scaffold114 99.5 True fake: scaffold gap size wrong estimation (local) 5194156 5195273 5791 6908 CM091768.1 scaffold114 100.0 True indel: indel (<= 5bp) 5195274 5199023 6912 10661 CM091768.1 scaffold114 99.41 True local misassembly 5199798 5201520 10736 12458 CM091768.1 scaffold114 100.0 True fake: scaffold gap size wrong estimation (local) 5202281 5202880 14249 14862 CM091768.1 scaffold114 97.56 True CONTIG scaffold114 14890 correct CONTIG scaffold115 297 unaligned 14325239 14350303 25078 29 CM091753.1 scaffold99 99.01 True indel: indel (> 5bp) 14208887 14325150 142513 25120 CM091753.1 scaffold99 98.61 True local misassembly 14051243 14208854 303266 142712 CM091753.1 scaffold99 98.28 True indel: indel (> 5bp) 13962123 14051197 392507 303324 CM091753.1 scaffold99 98.82 True local misassembly 13670997 13963540 692166 392528 CM091753.1 scaffold99 98.45 True indel: indel (> 5bp) 13567100 13670940 796103 692247 CM091753.1 scaffold99 99.13 True fake: scaffold gap size wrong estimation (local) 13508757 13566938 856410 796699 CM091753.1 scaffold99 99.29 True fake: scaffold gap size wrong estimation (local) 13476812 13508670 890268 857359 CM091753.1 scaffold99 98.7 True local misassembly 13468521 13477190 898921 890269 CM091753.1 scaffold99 99.44 True indel: indel (> 5bp) 13462143 13468250 905335 899217 CM091753.1 scaffold99 99.28 True local misassembly 13460212 13463357 908489 905336 CM091753.1 scaffold99 99.33 True fake: scaffold gap size wrong estimation (local) 13436704 13460005 932781 908739 CM091753.1 scaffold99 96.41 True local misassembly 13317785 13437556 1054399 932782 CM091753.1 scaffold99 98.81 True fake: scaffold gap size wrong estimation (local) 13293910 13317598 1079506 1055501 CM091753.1 scaffold99 97.98 True CONTIG scaffold99 1079506 correct 5091873 5155956 65288 2 CM091767.1 scaffold97 98.31 True indel: indel (> 5bp) 5052067 5091862 104729 65321 CM091767.1 scaffold97 97.68 True fake: scaffold gap size wrong estimation (local) 5033276 5051823 123955 105414 CM091767.1 scaffold97 99.22 True indel: indel (> 5bp) 4984850 5033223 172402 124017 CM091767.1 scaffold97 98.72 True indel: indel (<= 5bp) 4972806 4984827 184467 172423 CM091767.1 scaffold97 98.94 True indel: stretch of mismatches 4810895 4972729 346884 184544 CM091767.1 scaffold97 99.8 True local misassembly 4722781 4810822 436667 347249 CM091767.1 scaffold97 98.85 True indel: stretch of mismatches 4683504 4722712 476444 436736 CM091767.1 scaffold97 99.12 True fake: scaffold gap size wrong estimation (local) 4664150 4683137 496915 477221 CM091767.1 scaffold97 96.09 True fake: scaffold gap size wrong estimation (local) 4633569 4663668 530270 499364 CM091767.1 scaffold97 98.62 True fake: scaffold gap size wrong estimation (local) 4470201 4633399 694371 530759 CM091767.1 scaffold97 99.07 True fake: scaffold gap size wrong estimation (local) 4426647 4470030 738994 695014 CM091767.1 scaffold97 97.81 True fake: scaffold gap size wrong estimation (local) 4420308 4424913 745873 741263 CM091767.1 scaffold97 99.18 True indel: indel (<= 5bp) 4403838 4420248 762438 745929 CM091767.1 scaffold97 98.36 True local misassembly 4342100 4404867 827223 762439 CM091767.1 scaffold97 98.97 True indel: indel (> 5bp) 4334541 4341910 834698 827328 CM091767.1 scaffold97 99.23 True local misassembly 4239482 4334511 931136 835092 CM091767.1 scaffold97 99.39 True indel: indel (> 5bp) 4147001 4239339 1024290 931300 CM091767.1 scaffold97 99.61 True indel: indel (> 5bp) 4087765 4146839 1084035 1024415 CM091767.1 scaffold97 99.55 True indel: indel (> 5bp) 4053950 4087668 1118651 1084159 CM091767.1 scaffold97 99.0 True indel: indel (> 5bp) 4025982 4053757 1147018 1118874 CM091767.1 scaffold97 95.47 True fake: scaffold gap size wrong estimation (local) 4007309 4025628 1166169 1147471 CM091767.1 scaffold97 96.48 True indel: indel (<= 5bp) 4006566 4007217 1166913 1166262 CM091767.1 scaffold97 99.85 True indel: indel (<= 5bp) 4005302 4006564 1168176 1166914 CM091767.1 scaffold97 99.37 True indel: indel (<= 5bp) 4004099 4005295 1169376 1168180 CM091767.1 scaffold97 98.25 True local misassembly 4003135 4004098 1170643 1169680 CM091767.1 scaffold97 99.9 True indel: indel (> 5bp) 4002627 4003134 1171160 1170653 CM091767.1 scaffold97 100.0 True indel: stretch of mismatches 4001565 4002467 1172222 1171320 CM091767.1 scaffold97 99.78 True local misassembly 3999191 4001243 1174987 1172935 CM091767.1 scaffold97 99.71 True local misassembly 3997780 3999190 1177301 1175891 CM091767.1 scaffold97 99.5 True indel: indel (<= 5bp) 3996600 3997779 1178486 1177307 CM091767.1 scaffold97 99.58 True indel: indel (<= 5bp) 3993817 3996599 1181273 1178491 CM091767.1 scaffold97 99.35 True indel: stretch of mismatches 3992332 3993654 1182758 1181436 CM091767.1 scaffold97 99.85 True indel: stretch of mismatches 3991564 3992127 1183526 1182963 CM091767.1 scaffold97 100.0 True indel: indel (> 5bp) 3990437 3991089 1184620 1183968 CM091767.1 scaffold97 99.85 True indel: indel (<= 5bp) 3989191 3989954 1185865 1185102 CM091767.1 scaffold97 99.74 True local misassembly 3987773 3988481 1187280 1186572 CM091767.1 scaffold97 99.29 True indel: indel (> 5bp) 3985875 3987694 1189172 1187353 CM091767.1 scaffold97 100.0 True indel: indel (<= 5bp) 3984396 3985873 1190650 1189173 CM091767.1 scaffold97 99.86 True CONTIG scaffold97 1190935 correct CONTIG scaffold118 618 unaligned CONTIG scaffold119 413 unaligned 2829613 2849222 1 19591 CM091754.1 scaffold107 99.41 True local misassembly 2849529 2850274 20280 21025 CM091754.1 scaffold107 99.73 True indel: indel (<= 5bp) 2850275 2851139 21027 21891 CM091754.1 scaffold107 99.77 True local misassembly 2851236 2853052 22324 24140 CM091754.1 scaffold107 98.4 True fake: scaffold gap size wrong estimation (local) 2853896 2856008 25162 27275 CM091754.1 scaffold107 99.15 True indel: indel (> 5bp) 2856098 2856989 27384 28275 CM091754.1 scaffold107 99.1 True indel: indel (> 5bp) 2857334 2858832 28605 30103 CM091754.1 scaffold107 99.13 True indel: indel (> 5bp) 2859319 2862034 30584 33299 CM091754.1 scaffold107 99.37 True local misassembly 2862494 2864108 33300 34914 CM091754.1 scaffold107 98.08 True local misassembly 2866066 2866568 35805 36307 CM091754.1 scaffold107 98.41 True indel: indel (<= 5bp) 2866570 2867188 36308 36926 CM091754.1 scaffold107 98.38 True indel: indel (> 5bp) 2867497 2868737 37259 38499 CM091754.1 scaffold107 99.36 True indel: indel (<= 5bp) 2868739 2869302 38500 39063 CM091754.1 scaffold107 99.65 True indel: indel (<= 5bp) 2869307 2870911 39072 40676 CM091754.1 scaffold107 99.56 True local misassembly 2871558 2872281 41355 42078 CM091754.1 scaffold107 99.72 True local misassembly 2874439 2874944 44238 44743 CM091754.1 scaffold107 99.8 True indel: stretch of mismatches 2874954 2875943 44753 45742 CM091754.1 scaffold107 98.99 True local misassembly 2876355 2878191 47207 49043 CM091754.1 scaffold107 98.97 True local misassembly 2879125 2880322 50403 51600 CM091754.1 scaffold107 99.83 True indel: indel (> 5bp) 2880341 2881017 51625 52301 CM091754.1 scaffold107 99.41 True indel: indel (<= 5bp) 2881018 2882013 52303 53298 CM091754.1 scaffold107 99.0 True indel: indel (> 5bp) 2882034 2882560 53299 53825 CM091754.1 scaffold107 99.62 True indel: indel (> 5bp) 2882561 2883109 53833 54381 CM091754.1 scaffold107 99.64 True fake: scaffold gap size wrong estimation (local) 2883110 2883610 55155 55655 CM091754.1 scaffold107 99.0 True fake: scaffold gap size wrong estimation (local) 2885288 2895133 58284 68215 CM091754.1 scaffold107 99.02 True fake: scaffold gap size wrong estimation (local) 2896865 2897426 69830 70391 CM091754.1 scaffold107 100.0 True local misassembly 2898235 2898872 71199 71836 CM091754.1 scaffold107 99.84 True local misassembly 2899057 2900409 72275 73627 CM091754.1 scaffold107 99.63 True indel: indel (<= 5bp) 2900660 2901371 73877 74588 CM091754.1 scaffold107 100.0 True fake: scaffold gap size wrong estimation (local) 2902314 2909299 76229 83588 CM091754.1 scaffold107 98.5 True local misassembly 2909548 2919665 83738 93879 CM091754.1 scaffold107 98.68 True indel: indel (> 5bp) 2919710 2937660 93911 111809 CM091754.1 scaffold107 97.65 True indel: indel (> 5bp) 2937763 2939900 111904 114041 CM091754.1 scaffold107 99.53 True fake: scaffold gap size wrong estimation (local) 2940810 2944646 114656 118478 CM091754.1 scaffold107 97.13 True indel: indel (<= 5bp) 2944748 2948659 118581 122474 CM091754.1 scaffold107 97.76 True local misassembly 2949269 2969170 122974 143163 CM091754.1 scaffold107 97.35 True indel: indel (> 5bp) 2969241 2981899 143252 155959 CM091754.1 scaffold107 98.5 True fake: scaffold gap size wrong estimation (local) 2981990 2982531 156099 156640 CM091754.1 scaffold107 99.63 True indel: indel (<= 5bp) 2982532 2983256 156644 157368 CM091754.1 scaffold107 99.17 True local misassembly 2984611 2985318 158718 159425 CM091754.1 scaffold107 99.15 True indel: indel (<= 5bp) 2985321 2986593 159426 160698 CM091754.1 scaffold107 99.45 True indel: indel (> 5bp) 2986950 2988778 161044 162872 CM091754.1 scaffold107 98.58 True local misassembly 2989799 2991363 164474 166038 CM091754.1 scaffold107 98.53 True local misassembly 2992081 2993305 166516 167740 CM091754.1 scaffold107 99.18 True local misassembly 2993866 2994518 168294 168946 CM091754.1 scaffold107 99.69 True indel: indel (<= 5bp) 2994520 2995042 168947 169469 CM091754.1 scaffold107 100.0 True indel: indel (<= 5bp) 2995043 2996152 169471 170580 CM091754.1 scaffold107 99.73 True indel: indel (<= 5bp) 2996153 2997068 170582 171497 CM091754.1 scaffold107 99.45 True indel: indel (<= 5bp) 2997069 2999123 171499 173553 CM091754.1 scaffold107 99.56 True indel: indel (<= 5bp) 2999486 3000002 173919 174435 CM091754.1 scaffold107 99.42 True indel: indel (<= 5bp) 3000402 3001243 174838 175679 CM091754.1 scaffold107 99.52 True local misassembly 3002233 3002932 176730 177429 CM091754.1 scaffold107 100.0 True local misassembly 3004965 3006083 178691 179809 CM091754.1 scaffold107 99.02 True indel: indel (> 5bp) 3006264 3006981 179979 180696 CM091754.1 scaffold107 99.03 True fake: scaffold gap size wrong estimation (local) 3007507 3009092 181112 182697 CM091754.1 scaffold107 99.43 True local misassembly 3010736 3012187 184327 185778 CM091754.1 scaffold107 99.52 True indel: indel (<= 5bp) 3012193 3012972 185779 186558 CM091754.1 scaffold107 99.1 True indel: indel (<= 5bp) 3012974 3013545 186559 187130 CM091754.1 scaffold107 99.65 True local misassembly 3014148 3016380 187131 189363 CM091754.1 scaffold107 99.33 True indel: indel (<= 5bp) 3016552 3017212 189536 190196 CM091754.1 scaffold107 99.7 True indel: indel (<= 5bp) 3017214 3018592 190197 191575 CM091754.1 scaffold107 99.06 True indel: indel (<= 5bp) 3018719 3019712 191707 192700 CM091754.1 scaffold107 99.4 True indel: stretch of mismatches 3020057 3020783 193045 193771 CM091754.1 scaffold107 98.49 True local misassembly 3021260 3025128 194308 198198 CM091754.1 scaffold107 98.82 True fake: scaffold gap size wrong estimation (local) 3025427 3043533 198651 217449 CM091754.1 scaffold107 95.43 True local misassembly 3044788 3045373 218538 219123 CM091754.1 scaffold107 99.66 True indel: indel (> 5bp) 3045466 3049977 219194 224047 CM091754.1 scaffold107 98.13 True indel: indel (> 5bp) 3050054 3077691 224114 251836 CM091754.1 scaffold107 98.46 True indel: indel (> 5bp) 3077753 3105081 251914 279767 CM091754.1 scaffold107 95.5 True indel: indel (> 5bp) 3105175 3121898 279851 296590 CM091754.1 scaffold107 98.73 True indel: indel (> 5bp) 3122233 3144644 296931 319378 CM091754.1 scaffold107 99.32 True indel: indel (> 5bp) 3144985 3157215 319707 332294 CM091754.1 scaffold107 97.58 True indel: indel (> 5bp) 3157542 3160220 332662 335342 CM091754.1 scaffold107 96.32 True indel: indel (> 5bp) 3160356 3215616 335490 390840 CM091754.1 scaffold107 97.41 True local misassembly 3217180 3218673 392584 394078 CM091754.1 scaffold107 98.93 True indel: indel (> 5bp) 3218831 3219980 394199 395348 CM091754.1 scaffold107 98.96 True local misassembly 3220774 3222697 395349 397272 CM091754.1 scaffold107 99.74 True indel: indel (<= 5bp) 3222698 3223243 397276 397821 CM091754.1 scaffold107 99.27 True indel: indel (<= 5bp) 3223248 3225186 397822 399760 CM091754.1 scaffold107 99.07 True indel: stretch of mismatches 3225571 3226287 400145 400861 CM091754.1 scaffold107 99.44 True indel: indel (> 5bp) 3226294 3227338 400862 401906 CM091754.1 scaffold107 99.9 True indel: indel (<= 5bp) 3227699 3230461 402269 405031 CM091754.1 scaffold107 99.35 True indel: indel (<= 5bp) 3230465 3231229 405032 405796 CM091754.1 scaffold107 99.61 True indel: indel (<= 5bp) 3231230 3232250 405798 406818 CM091754.1 scaffold107 99.22 True indel: indel (<= 5bp) 3232252 3233068 406819 407635 CM091754.1 scaffold107 99.14 True local misassembly 3233352 3234154 407636 408438 CM091754.1 scaffold107 98.26 True indel: indel (<= 5bp) 3234155 3235662 408440 409947 CM091754.1 scaffold107 99.73 True indel: indel (<= 5bp) 3235741 3237574 410023 411856 CM091754.1 scaffold107 99.51 True indel: indel (> 5bp) 3237709 3238326 411985 412602 CM091754.1 scaffold107 99.19 True indel: indel (<= 5bp) 3238470 3242175 412748 416453 CM091754.1 scaffold107 99.54 True indel: indel (<= 5bp) 3242176 3243195 416455 417474 CM091754.1 scaffold107 99.71 True local misassembly 3244555 3253554 418942 427964 CM091754.1 scaffold107 98.89 True local misassembly 3253290 3253789 427965 428464 CM091754.1 scaffold107 98.12 True local misassembly 3254029 3254831 428465 429267 CM091754.1 scaffold107 97.88 True local misassembly 3253294 3253853 429268 429827 CM091754.1 scaffold107 95.71 True local misassembly 3253908 3254629 430980 431701 CM091754.1 scaffold107 96.12 True local misassembly 3255266 3256889 432609 434232 CM091754.1 scaffold107 99.57 True local misassembly 3257362 3265829 434749 443480 CM091754.1 scaffold107 98.76 True fake: scaffold gap size wrong estimation (local) 3266242 3269045 444290 447093 CM091754.1 scaffold107 99.64 True indel: indel (<= 5bp) 3269046 3270714 447095 448763 CM091754.1 scaffold107 99.82 True indel: indel (<= 5bp) 3271038 3271540 449085 449587 CM091754.1 scaffold107 99.01 True indel: indel (> 5bp) 3272026 3273475 450079 451528 CM091754.1 scaffold107 99.38 True indel: indel (<= 5bp) 3273832 3274458 451887 452513 CM091754.1 scaffold107 99.04 True indel: indel (<= 5bp) 3274460 3275867 452514 453921 CM091754.1 scaffold107 99.93 True indel: indel (<= 5bp) 3275868 3276844 453923 454899 CM091754.1 scaffold107 99.28 True local misassembly 3277838 3278850 454900 455912 CM091754.1 scaffold107 99.61 True indel: indel (<= 5bp) 3278851 3279992 455916 457057 CM091754.1 scaffold107 99.74 True indel: indel (<= 5bp) 3279993 3282271 457059 459337 CM091754.1 scaffold107 99.39 True indel: indel (<= 5bp) 3282272 3283049 459339 460116 CM091754.1 scaffold107 99.36 True local misassembly 3283848 3292097 460222 468487 CM091754.1 scaffold107 98.86 True indel: indel (> 5bp) 3292348 3344952 468731 520450 CM091754.1 scaffold107 96.88 True local misassembly 3345394 3346661 521008 522282 CM091754.1 scaffold107 97.58 True indel: indel (> 5bp) 3346787 3359987 522427 535928 CM091754.1 scaffold107 96.42 True indel: stretch of mismatches 3360007 3366292 535948 542245 CM091754.1 scaffold107 98.26 True local misassembly 3369997 3374467 542301 546767 CM091754.1 scaffold107 98.75 True fake: scaffold gap size wrong estimation (local) 3374701 3378462 547360 551175 CM091754.1 scaffold107 97.38 True indel: indel (<= 5bp) 3378471 3395368 551182 568484 CM091754.1 scaffold107 95.99 True fake: scaffold gap size wrong estimation (local) 3395645 3425710 569120 599579 CM091754.1 scaffold107 97.72 True fake: scaffold gap size wrong estimation (local) 3425852 3498301 599738 672973 CM091754.1 scaffold107 96.53 True fake: scaffold gap size wrong estimation (local) 3498180 3499248 673573 674641 CM091754.1 scaffold107 99.63 True CONTIG scaffold107 674641 correct 880189 880979 791 1 CM091764.1 scaffold120 99.75 True fake: scaffold gap size wrong estimation (local) 855601 879839 26143 1598 CM091764.1 scaffold120 98.62 True fake: scaffold gap size wrong estimation (local) 791147 854583 91620 28110 CM091764.1 scaffold120 99.5 True local misassembly 781756 788720 100724 93761 CM091764.1 scaffold120 99.81 True CONTIG scaffold120 100724 correct 4565254 4569600 4548 1 CM091754.1 scaffold122 95.21 True CONTIG scaffold122 4562 correct 4060287 4062591 2273 1 CM091752.1 scaffold123 98.57 True fake: scaffold gap size wrong estimation (local) 4057993 4059984 4697 2635 CM091752.1 scaffold123 96.17 True indel: stretch of mismatches 4051658 4057921 11056 4769 CM091752.1 scaffold123 97.34 True local misassembly 4051465 4052533 12124 11057 CM091752.1 scaffold123 99.63 True CONTIG scaffold123 12124 correct 3407292 3409448 2586 429 CM091756.1 scaffold100 98.7 True local misassembly 3326365 3401221 77893 2607 CM091756.1 scaffold100 99.71 True fake: scaffold gap size wrong estimation (local) 3202270 3326267 204909 78988 CM091756.1 scaffold100 99.02 True indel: indel (<= 5bp) 3181907 3202223 225977 204958 CM091756.1 scaffold100 99.11 True indel: indel (<= 5bp) 2999100 3181825 414798 226058 CM091756.1 scaffold100 98.87 True fake: scaffold gap size wrong estimation (local) 2917147 2999010 497637 415555 CM091756.1 scaffold100 98.57 True indel: indel (> 5bp) 2831000 2917062 584726 497789 CM091756.1 scaffold100 99.29 True local misassembly 2496975 2831566 923237 584746 CM091756.1 scaffold100 99.09 True local misassembly 2492418 2497646 928525 923293 CM091756.1 scaffold100 99.66 True local misassembly 2417148 2492376 1006304 928679 CM091756.1 scaffold100 98.11 True fake: scaffold gap size wrong estimation (local) 2341058 2416906 1086359 1007365 CM091756.1 scaffold100 99.36 True local misassembly 2276535 2341629 1153445 1086375 CM091756.1 scaffold100 99.18 True CONTIG scaffold100 1153445 correct 7564275 7589105 1 25397 CM091756.1 scaffold85 97.33 True fake: scaffold gap size wrong estimation (local) 7589269 7735577 26424 175168 CM091756.1 scaffold85 98.95 True indel: indel (> 5bp) 7735622 8021104 175250 466603 CM091756.1 scaffold85 98.47 True local misassembly 8019191 8031915 466604 479325 CM091756.1 scaffold85 99.27 True indel: indel (> 5bp) 8031958 8071315 479401 518771 CM091756.1 scaffold85 99.09 True indel: indel (<= 5bp) 8071325 8080062 518784 527463 CM091756.1 scaffold85 98.31 True indel: indel (> 5bp) 8080112 8147648 527491 596235 CM091756.1 scaffold85 98.48 True local misassembly 8148303 8149109 597070 597875 CM091756.1 scaffold85 99.5 True indel: indel (> 5bp) 8149201 8168637 597912 617790 CM091756.1 scaffold85 97.02 True fake: scaffold gap size wrong estimation (local) 8168453 8180389 618422 630143 CM091756.1 scaffold85 97.51 True indel: indel (> 5bp) 8180432 8384764 630178 835713 CM091756.1 scaffold85 99.08 True local misassembly 8386076 8389234 836644 839797 CM091756.1 scaffold85 98.92 True local misassembly 8389326 8401922 840310 853891 CM091756.1 scaffold85 98.54 True indel: indel (> 5bp) 8401973 8404076 853949 856059 CM091756.1 scaffold85 98.96 True indel: indel (> 5bp) 8404241 8415721 856194 867607 CM091756.1 scaffold85 96.59 True local misassembly 8416638 8423257 868783 875403 CM091756.1 scaffold85 98.97 True indel: indel (> 5bp) 8423438 8467175 875566 919560 CM091756.1 scaffold85 97.92 True local misassembly 8467419 8635623 919640 1088807 CM091756.1 scaffold85 99.4 True indel: indel (> 5bp) 8635719 8672667 1088865 1126386 CM091756.1 scaffold85 99.59 True local misassembly 8671099 8722725 1126387 1178020 CM091756.1 scaffold85 99.51 True indel: indel (<= 5bp) 8722804 8803594 1178102 1259320 CM091756.1 scaffold85 99.57 True fake: not a misassembly (possible transposable element) 4978008 4978966 1260279 1259321 CM091767.1 scaffold85 99.79 True fake: not a misassembly (possible transposable element) 8804050 8851929 1260280 1308229 CM091756.1 scaffold85 99.35 True indel: indel (<= 5bp) 8851958 8871341 1308256 1327719 CM091756.1 scaffold85 98.96 True local misassembly 8871781 8995290 1328320 1454172 CM091756.1 scaffold85 98.11 True local misassembly 8995381 8999878 1454366 1458881 CM091756.1 scaffold85 98.56 True local misassembly 9000996 9008015 1460281 1467321 CM091756.1 scaffold85 98.98 True local misassembly 9008861 9082072 1468334 1542836 CM091756.1 scaffold85 96.49 True local misassembly 9084277 9104483 1544793 1565964 CM091756.1 scaffold85 95.7 True local misassembly 9104711 9107775 1566075 1569174 CM091756.1 scaffold85 98.03 True local misassembly 9108011 9120617 1569614 1582273 CM091756.1 scaffold85 98.14 True indel: indel (<= 5bp) 9120693 9121360 1582350 1583017 CM091756.1 scaffold85 100.0 True indel: indel (> 5bp) 9121361 9121929 1583029 1583597 CM091756.1 scaffold85 100.0 True fake: scaffold gap size wrong estimation (local) 9121972 9122768 1584616 1585412 CM091756.1 scaffold85 95.73 True local misassembly 9123401 9125367 1586065 1588031 CM091756.1 scaffold85 99.34 True indel: indel (> 5bp) 9125487 9126322 1588160 1588995 CM091756.1 scaffold85 99.16 True local misassembly 9127459 9128846 1589824 1591211 CM091756.1 scaffold85 99.71 True local misassembly 9129211 9130281 1591348 1592418 CM091756.1 scaffold85 99.25 True local misassembly 9130448 9132881 1592419 1594852 CM091756.1 scaffold85 99.47 True indel: indel (<= 5bp) 9132882 9133526 1594855 1595499 CM091756.1 scaffold85 99.84 True local misassembly 9134219 9135876 1595947 1597604 CM091756.1 scaffold85 99.22 True indel: indel (> 5bp) 9136088 9137228 1597808 1598948 CM091756.1 scaffold85 99.74 True local misassembly 9138473 9139491 1600754 1601772 CM091756.1 scaffold85 98.92 True indel: indel (<= 5bp) 9139492 9140427 1601774 1602709 CM091756.1 scaffold85 98.93 True local misassembly 9141043 9141565 1603328 1603850 CM091756.1 scaffold85 98.85 True local misassembly 9142877 9143531 1605120 1605774 CM091756.1 scaffold85 99.08 True indel: indel (> 5bp) 9143995 9145816 1606253 1608074 CM091756.1 scaffold85 99.73 True fake: scaffold gap size wrong estimation (local) 9146439 9148934 1609307 1611817 CM091756.1 scaffold85 97.35 True indel: indel (<= 5bp) 9149007 9163572 1611889 1626413 CM091756.1 scaffold85 98.84 True indel: indel (<= 5bp) 9163639 9193795 1626485 1656622 CM091756.1 scaffold85 98.73 True indel: indel (> 5bp) 9193841 9330029 1656644 1793405 CM091756.1 scaffold85 99.19 True indel: indel (> 5bp) 9330200 9389294 1793582 1853020 CM091756.1 scaffold85 98.71 True local misassembly 9389962 9399638 1853729 1863892 CM091756.1 scaffold85 99.08 True indel: indel (> 5bp) 9399701 9452770 1863936 1917276 CM091756.1 scaffold85 98.31 True indel: indel (<= 5bp) 9452857 9466314 1917364 1931508 CM091756.1 scaffold85 99.08 True indel: indel (<= 5bp) 9466495 9468128 1931692 1933325 CM091756.1 scaffold85 99.88 True fake: scaffold gap size wrong estimation (local) 9468129 9468760 1933938 1934569 CM091756.1 scaffold85 99.37 True indel: indel (<= 5bp) 9468761 9470392 1934571 1936202 CM091756.1 scaffold85 99.82 True fake: scaffold gap size wrong estimation (local) 9470393 9471132 1936807 1937546 CM091756.1 scaffold85 97.57 True indel: indel (> 5bp) 9471142 9472271 1937547 1938676 CM091756.1 scaffold85 99.91 True indel: indel (<= 5bp) 9472324 9472880 1938724 1939280 CM091756.1 scaffold85 98.74 True indel: indel (<= 5bp) 9472881 9473651 1939282 1940052 CM091756.1 scaffold85 100.0 True indel: indel (> 5bp) 9473940 9474560 1940325 1940945 CM091756.1 scaffold85 99.68 True indel: indel (<= 5bp) 9474875 9475413 1941262 1941800 CM091756.1 scaffold85 98.89 True indel: indel (<= 5bp) 9475418 9476053 1941801 1942436 CM091756.1 scaffold85 99.37 True indel: indel (<= 5bp) 9476054 9477657 1942441 1944044 CM091756.1 scaffold85 99.69 True local misassembly 9479537 9480419 1945904 1946786 CM091756.1 scaffold85 99.77 True local misassembly 9482202 9482885 1948568 1949251 CM091756.1 scaffold85 99.85 True local misassembly 9484370 9485220 1949737 1950587 CM091756.1 scaffold85 99.65 True indel: indel (<= 5bp) 9485221 9485880 1950589 1951248 CM091756.1 scaffold85 99.55 True local misassembly 9484211 9499881 1953118 1968786 CM091756.1 scaffold85 99.32 True fake: scaffold gap size wrong estimation (local) 9499895 9519690 1969417 1989419 CM091756.1 scaffold85 98.08 True local misassembly 9519893 9610630 1989799 2081642 CM091756.1 scaffold85 97.25 True indel: indel (> 5bp) 9610889 9640514 2081937 2110636 CM091756.1 scaffold85 96.27 True indel: indel (<= 5bp) 9640566 9659419 2110687 2130116 CM091756.1 scaffold85 99.59 True CONTIG scaffold85 2130157 correct 13036951 13037876 27 953 CM091752.1 scaffold125 98.28 True translocation 12804802 12815829 954 11982 CM091758.1 scaffold125 99.81 True indel: indel (> 5bp) 12815957 12882548 12163 79505 CM091758.1 scaffold125 98.74 True local misassembly 12881852 12883784 79506 81438 CM091758.1 scaffold125 99.9 True CONTIG scaffold125 81438 misassembled CONTIG scaffold126 956 unaligned CONTIG scaffold128 406 unaligned 3292818 3309710 3 16842 CM091759.1 scaffold129 99.68 True local misassembly 3309474 3314981 17264 22809 CM091759.1 scaffold129 98.44 True fake: scaffold gap size wrong estimation (local) 3315063 3325011 22902 32901 CM091759.1 scaffold129 99.67 True indel: indel (> 5bp) 3325263 3337651 33214 45620 CM091759.1 scaffold129 99.73 True CONTIG scaffold129 45620 correct CONTIG scaffold130 395 unaligned 14588937 14590258 1 1309 CM091756.1 scaffold124 98.18 True local misassembly 14590975 14603022 1913 14487 CM091756.1 scaffold124 99.27 True fake: scaffold gap size wrong estimation (local) 14603402 14916973 15049 332546 CM091756.1 scaffold124 99.25 True indel: indel (<= 5bp) 14917002 15011169 332573 428034 CM091756.1 scaffold124 98.21 True CONTIG scaffold124 435523 correct 3165591 3166856 1275 1 CM091768.1 scaffold131 97.57 True local misassembly 3163953 3166471 3983 1438 CM091768.1 scaffold131 97.45 True fake: scaffold gap size wrong estimation (local) 3162000 3162671 6260 5589 CM091768.1 scaffold131 99.26 True indel: indel (<= 5bp) 3160295 3161967 7967 6295 CM091768.1 scaffold131 99.64 True indel: indel (<= 5bp) 3158692 3160129 9573 8136 CM091768.1 scaffold131 98.89 True indel: indel (<= 5bp) 3158152 3158691 10117 9578 CM091768.1 scaffold131 99.26 True local misassembly 3154741 3155995 12929 11675 CM091768.1 scaffold131 99.52 True local misassembly 3152956 3154287 14616 13285 CM091768.1 scaffold131 99.47 True local misassembly 3151148 3152126 16434 15456 CM091768.1 scaffold131 99.49 True indel: indel (> 5bp) 3124282 3151047 43140 16503 CM091768.1 scaffold131 98.28 True local misassembly 3121089 3123764 46062 43387 CM091768.1 scaffold131 99.4 True indel: indel (> 5bp) 3118976 3120845 48169 46300 CM091768.1 scaffold131 99.2 True indel: indel (<= 5bp) 3118470 3118975 48679 48174 CM091768.1 scaffold131 97.43 True local misassembly 3115767 3116641 50426 49552 CM091768.1 scaffold131 98.86 True local misassembly 3114578 3115167 51610 51021 CM091768.1 scaffold131 99.83 True indel: indel (<= 5bp) 3113913 3114577 52276 51612 CM091768.1 scaffold131 99.25 True indel: indel (<= 5bp) 3112591 3113742 53600 52449 CM091768.1 scaffold131 99.31 True local misassembly 3107455 3108193 58749 58011 CM091768.1 scaffold131 99.05 True indel: indel (> 5bp) 3106263 3107338 59992 58917 CM091768.1 scaffold131 99.16 True indel: stretch of mismatches 3105526 3106177 60729 60078 CM091768.1 scaffold131 99.39 True fake: scaffold gap size wrong estimation (local) 3103352 3104401 63238 62189 CM091768.1 scaffold131 99.52 True indel: indel (> 5bp) 3097325 3103304 69995 63297 CM091768.1 scaffold131 95.97 True indel: indel (> 5bp) 3093208 3097248 74097 70055 CM091768.1 scaffold131 99.14 True indel: indel (> 5bp) 3084532 3093131 82938 74182 CM091768.1 scaffold131 96.52 True indel: indel (> 5bp) 3055018 3084265 112119 83180 CM091768.1 scaffold131 98.13 True indel: indel (> 5bp) 3032476 3054988 135086 112170 CM091768.1 scaffold131 98.05 True local misassembly 3030122 3031331 137360 136151 CM091768.1 scaffold131 98.93 True indel: indel (> 5bp) 3028439 3030096 139018 137361 CM091768.1 scaffold131 99.22 True local misassembly 3008428 3026615 159136 140675 CM091768.1 scaffold131 97.11 True indel: indel (> 5bp) 2945127 3008398 223450 159197 CM091768.1 scaffold131 98.63 True CONTIG scaffold131 223450 correct 1574206 1575406 1232 1 CM091764.1 scaffold132 95.54 True translocation, scaffold gap is present 9174787 9179140 7304 2804 CM091767.1 scaffold132 99.04 True indel: indel (> 5bp) 9173256 9174645 8915 7478 CM091767.1 scaffold132 96.31 True local misassembly 9171997 9172659 10041 9379 CM091767.1 scaffold132 99.85 True local misassembly 9161002 9171401 20450 10044 CM091767.1 scaffold132 99.12 True CONTIG scaffold132 20450 misassembled 141885 158372 1 16579 CM091764.1 scaffold134 99.46 True CONTIG scaffold134 16579 correct CONTIG scaffold133 917 unaligned CONTIG scaffold127 1218 unaligned CONTIG scaffold137 8131 unaligned 2717618 2718652 1036 1 CM091753.1 scaffold138 99.81 True fake: scaffold gap size wrong estimation (local) 2620289 2717349 101169 2040 CM091753.1 scaffold138 98.88 True fake: scaffold gap size wrong estimation (local) 2544127 2620084 178560 101403 CM091753.1 scaffold138 98.94 True local misassembly 2517447 2543925 205108 178631 CM091753.1 scaffold138 99.4 True fake: scaffold gap size wrong estimation (local) 2506008 2515458 216338 206875 CM091753.1 scaffold138 99.44 True local misassembly 2433670 2506809 289717 216339 CM091753.1 scaffold138 99.12 True fake: scaffold gap size wrong estimation (local) 2271580 2433537 459574 290935 CM091753.1 scaffold138 99.17 True CONTIG scaffold138 461777 correct 3511809 3513295 1490 1 CM091751.1 scaffold117 99.66 True local misassembly 3447454 3513317 67824 1491 CM091751.1 scaffold117 98.92 True fake: scaffold gap size wrong estimation (local) 3436835 3447313 78994 68512 CM091751.1 scaffold117 99.66 True fake: scaffold gap size wrong estimation (local) 3359963 3436325 159205 79665 CM091751.1 scaffold117 97.59 True fake: scaffold gap size wrong estimation (local) 3313025 3359843 209833 159746 CM091751.1 scaffold117 96.38 True local misassembly 3308687 3314581 215717 209834 CM091751.1 scaffold117 99.42 True indel: indel (> 5bp) 3144964 3308342 381611 216006 CM091751.1 scaffold117 98.79 True indel: indel (> 5bp) 3127441 3144745 399740 381816 CM091751.1 scaffold117 99.16 True local misassembly 3090769 3127288 436797 399784 CM091751.1 scaffold117 98.51 True local misassembly 3077625 3091671 450919 436854 CM091751.1 scaffold117 99.37 True fake: scaffold gap size wrong estimation (local) 3055799 3077271 472854 451302 CM091751.1 scaffold117 98.75 True indel: indel (> 5bp) 2897738 3055756 634429 472923 CM091751.1 scaffold117 98.03 True indel: indel (> 5bp) 2858647 2897321 674104 634860 CM091751.1 scaffold117 98.49 True local misassembly 2855120 2857064 677307 675364 CM091751.1 scaffold117 99.18 True CONTIG scaffold117 677307 correct 2399796 2413507 13705 1 CM091760.1 scaffold108 99.64 True fake: scaffold gap size wrong estimation (local) 2398319 2399386 15678 14611 CM091760.1 scaffold108 100.0 True local misassembly 2283952 2398989 134969 16310 CM091760.1 scaffold108 98.99 True fake: scaffold gap size wrong estimation (local) 2275524 2283473 143407 135459 CM091760.1 scaffold108 99.65 True fake: scaffold gap size wrong estimation (local) 2245187 2275346 174811 144218 CM091760.1 scaffold108 99.67 True local misassembly 2239109 2246159 181870 174812 CM091760.1 scaffold108 99.76 True fake: scaffold gap size wrong estimation (local) 2168203 2238802 254860 182683 CM091760.1 scaffold108 99.0 True fake: scaffold gap size wrong estimation (local) 2164601 2168055 259469 255627 CM091760.1 scaffold108 99.83 True fake: scaffold gap size wrong estimation (local) 2163621 2164435 260462 259645 CM091760.1 scaffold108 99.63 True fake: scaffold gap size wrong estimation (local) 2102679 2162830 324854 261337 CM091760.1 scaffold108 99.62 True fake: scaffold gap size wrong estimation (local) 2092970 2102411 335302 325463 CM091760.1 scaffold108 99.54 True local misassembly 2083047 2094128 346797 335303 CM091760.1 scaffold108 99.22 True fake: scaffold gap size wrong estimation (local) 2074694 2082337 355212 347569 CM091760.1 scaffold108 99.57 True fake: scaffold gap size wrong estimation (local) 2031271 2074311 400526 355802 CM091760.1 scaffold108 99.03 True fake: scaffold gap size wrong estimation (local) 2024740 2030828 410088 401163 CM091760.1 scaffold108 99.36 True fake: scaffold gap size wrong estimation (local) 2018782 2024636 416700 410786 CM091760.1 scaffold108 99.15 True fake: scaffold gap size wrong estimation (local) 1999497 2018643 436611 416953 CM091760.1 scaffold108 99.7 True fake: scaffold gap size wrong estimation (local) 1971800 1999403 467460 436960 CM091760.1 scaffold108 99.71 True fake: scaffold gap size wrong estimation (local) 1948496 1971441 491033 468089 CM091760.1 scaffold108 99.72 True fake: scaffold gap size wrong estimation (local) 1834587 1948330 607546 492385 CM091760.1 scaffold108 98.99 True local misassembly 1830807 1835626 612366 607547 CM091760.1 scaffold108 99.75 True fake: scaffold gap size wrong estimation (local) 1568026 1830699 881475 613042 CM091760.1 scaffold108 99.26 True fake: scaffold gap size wrong estimation (local) 1362109 1567890 1093821 882433 CM091760.1 scaffold108 99.42 True fake: scaffold gap size wrong estimation (local) 1239553 1361944 1217352 1094436 CM091760.1 scaffold108 99.24 True fake: scaffold gap size wrong estimation (local) 1209105 1239324 1248979 1218362 CM091760.1 scaffold108 99.76 True local misassembly 1196811 1210093 1264469 1248980 CM091760.1 scaffold108 99.39 True indel: indel (<= 5bp) 1194571 1196718 1266717 1264567 CM091760.1 scaffold108 99.72 True local misassembly 1130558 1194241 1334536 1267171 CM091760.1 scaffold108 99.5 True fake: scaffold gap size wrong estimation (local) 1106759 1130213 1359376 1335137 CM091760.1 scaffold108 99.41 True local misassembly 1080428 1106725 1387689 1359596 CM091760.1 scaffold108 99.61 True fake: scaffold gap size wrong estimation (local) 1075553 1080161 1393372 1388767 CM091760.1 scaffold108 99.5 True fake: scaffold gap size wrong estimation (local) 1066365 1075332 1406850 1396814 CM091760.1 scaffold108 99.63 True fake: scaffold gap size wrong estimation (local) 1055456 1066242 1418562 1407432 CM091760.1 scaffold108 96.11 True indel: indel (> 5bp) 932277 1055281 1543392 1418771 CM091760.1 scaffold108 99.18 True indel: indel (> 5bp) 816382 932179 1659353 1543461 CM091760.1 scaffold108 99.6 True fake: scaffold gap size wrong estimation (local) 754832 816198 1725070 1662424 CM091760.1 scaffold108 99.56 True indel: indel (<= 5bp) 752626 754825 1727283 1725079 CM091760.1 scaffold108 99.73 True fake: scaffold gap size wrong estimation (local) 656896 752405 1824509 1727976 CM091760.1 scaffold108 99.05 True fake: scaffold gap size wrong estimation (local) 651714 654179 1828789 1826301 CM091760.1 scaffold108 99.75 True CONTIG scaffold108 1828789 correct CONTIG scaffold141 3771 unaligned 4125504 4127349 1 1843 CM091764.1 scaffold136 99.51 True fake: scaffold gap size wrong estimation (local) 4126554 4179820 2574 55839 CM091764.1 scaffold136 99.48 True fake: scaffold gap size wrong estimation (local) 4180926 4184996 57916 62044 CM091764.1 scaffold136 98.81 True fake: scaffold gap size wrong estimation (local) 4185339 4239645 62231 116623 CM091764.1 scaffold136 99.22 True local misassembly 4239717 4277490 117365 155699 CM091764.1 scaffold136 99.06 True fake: not a misassembly (possible transposable element) 4276468 4277632 156865 155700 CM091764.1 scaffold136 99.33 True fake: not a misassembly (possible transposable element) 4277726 4313699 156866 194495 CM091764.1 scaffold136 99.13 True indel: indel (> 5bp) 4313782 4447791 194657 329435 CM091764.1 scaffold136 99.02 True local misassembly 4447275 4479596 329448 361781 CM091764.1 scaffold136 99.35 True indel: indel (> 5bp) 4479662 4584755 361807 471083 CM091764.1 scaffold136 99.52 True fake: scaffold gap size wrong estimation (local) 4586146 4756434 473292 648039 CM091764.1 scaffold136 98.96 True local misassembly 4755676 4767684 648040 660494 CM091764.1 scaffold136 99.53 True fake: scaffold gap size wrong estimation (local) 4767679 4995046 661103 891940 CM091764.1 scaffold136 99.28 True local misassembly 4995356 5060050 892159 957946 CM091764.1 scaffold136 99.41 True CONTIG scaffold136 957946 correct 7279978 7285011 28 5156 CM091767.1 scaffold143 97.04 True fake: not a misassembly (possible transposable element) 3718222 3718884 5157 5817 CM091761.1 scaffold143 98.86 True fake: not a misassembly (possible transposable element) 7284339 7296753 5818 18219 CM091767.1 scaffold143 97.91 True indel: indel (<= 5bp) 7296881 7311675 18351 33139 CM091767.1 scaffold143 98.85 True indel: indel (> 5bp) 7311814 7326759 33286 48754 CM091767.1 scaffold143 98.89 True fake: scaffold gap size wrong estimation (local) 7327208 7359763 49215 83390 CM091767.1 scaffold143 96.46 True local misassembly 7359235 7374451 83407 98611 CM091767.1 scaffold143 99.69 True indel: indel (<= 5bp) 7374497 7380203 98662 104367 CM091767.1 scaffold143 99.89 True fake: scaffold gap size wrong estimation (local) 7380349 7460214 104613 185342 CM091767.1 scaffold143 98.45 True indel: indel (> 5bp) 7460259 7501340 185457 227550 CM091767.1 scaffold143 97.45 True fake: scaffold gap size wrong estimation (local) 7501156 7522366 228027 250053 CM091767.1 scaffold143 96.03 True fake: scaffold gap size wrong estimation (local) 7522711 7535346 250569 263209 CM091767.1 scaffold143 99.93 True fake: scaffold gap size wrong estimation (local) 7535982 7537865 264328 266211 CM091767.1 scaffold143 100.0 True fake: scaffold gap size wrong estimation (local) 7538073 7542719 266904 271550 CM091767.1 scaffold143 100.0 True fake: scaffold gap size wrong estimation (local) 7542860 7545082 271805 274027 CM091767.1 scaffold143 99.87 True fake: scaffold gap size wrong estimation (local) 7544884 7556403 274487 286357 CM091767.1 scaffold143 96.82 True fake: not a misassembly (possible transposable element) 9112843 9113388 286902 286358 CM091760.1 scaffold143 99.3 True fake: not a misassembly (possible transposable element) 7560853 7582169 286954 308305 CM091767.1 scaffold143 99.76 True fake: scaffold gap size wrong estimation (local) 7583107 7583704 309248 309845 CM091767.1 scaffold143 100.0 True fake: scaffold gap size wrong estimation (local) 7583705 7584945 309910 311150 CM091767.1 scaffold143 99.36 True local misassembly 7586045 7623041 312544 349809 CM091767.1 scaffold143 99.14 True CONTIG scaffold143 349809 correct 6632767 6883363 1 256282 CM091762.1 scaffold140 98.7 True indel: indel (> 5bp) 6883582 7016589 256535 392120 CM091762.1 scaffold140 98.05 True indel: indel (<= 5bp) 7016660 7018170 392193 393703 CM091762.1 scaffold140 99.67 True indel: indel (> 5bp) 7018550 7019081 394093 394624 CM091762.1 scaffold140 99.44 True indel: indel (> 5bp) 7019088 7020349 394625 395886 CM091762.1 scaffold140 99.52 True indel: indel (<= 5bp) 7020716 7021336 396252 396872 CM091762.1 scaffold140 99.84 True indel: stretch of mismatches 7021706 7023649 397242 399185 CM091762.1 scaffold140 99.79 True indel: indel (<= 5bp) 7023650 7024327 399187 399864 CM091762.1 scaffold140 99.85 True indel: indel (> 5bp) 7024448 7025727 400009 401288 CM091762.1 scaffold140 99.61 True indel: indel (<= 5bp) 7025838 7026488 401402 402052 CM091762.1 scaffold140 100.0 True indel: indel (<= 5bp) 7026489 7027571 402054 403136 CM091762.1 scaffold140 99.91 True indel: indel (> 5bp) 7027740 7028341 403293 403894 CM091762.1 scaffold140 99.83 True indel: indel (<= 5bp) 7028378 7029343 403933 404898 CM091762.1 scaffold140 98.86 True indel: indel (<= 5bp) 7029345 7030685 404899 406239 CM091762.1 scaffold140 99.78 True local misassembly 7031562 7032458 407123 408019 CM091762.1 scaffold140 99.67 True indel: indel (> 5bp) 7032926 7039838 408481 415393 CM091762.1 scaffold140 99.78 True indel: indel (<= 5bp) 7039841 7041417 415394 416970 CM091762.1 scaffold140 98.73 True indel: indel (<= 5bp) 7041418 7043670 416972 419224 CM091762.1 scaffold140 99.56 True local misassembly 7044683 7047340 420244 422901 CM091762.1 scaffold140 99.62 True indel: indel (<= 5bp) 7047341 7052103 422905 427667 CM091762.1 scaffold140 99.6 True indel: indel (> 5bp) 7052104 7052855 427675 428426 CM091762.1 scaffold140 99.2 True indel: indel (<= 5bp) 7052867 7054067 428437 429637 CM091762.1 scaffold140 99.92 True indel: indel (> 5bp) 7054130 7055418 429711 430999 CM091762.1 scaffold140 99.07 True local misassembly 7059342 7061252 431232 433142 CM091762.1 scaffold140 99.79 True indel: indel (<= 5bp) 7061635 7063011 433524 434900 CM091762.1 scaffold140 99.49 True indel: indel (<= 5bp) 7063012 7064368 434902 436258 CM091762.1 scaffold140 100.0 True indel: indel (<= 5bp) 7064369 7064920 436260 436811 CM091762.1 scaffold140 98.73 True local misassembly 7065464 7071389 437354 443279 CM091762.1 scaffold140 99.88 True indel: indel (<= 5bp) 7071462 7076393 443354 448285 CM091762.1 scaffold140 99.82 True indel: indel (> 5bp) 7076603 7078042 448511 449953 CM091762.1 scaffold140 98.89 True local misassembly 7077105 7182264 449954 557012 CM091762.1 scaffold140 98.42 True indel: indel (> 5bp) 7182328 7347177 557060 722725 CM091762.1 scaffold140 99.11 True fake: scaffold gap size wrong estimation (local) 7347334 7383227 723741 759539 CM091762.1 scaffold140 99.65 True local misassembly 7384561 7422990 760888 799321 CM091762.1 scaffold140 99.92 True local misassembly 7423570 7465985 800109 842527 CM091762.1 scaffold140 99.86 True fake: scaffold gap size wrong estimation (local) 7466156 7468717 843413 845974 CM091762.1 scaffold140 99.61 True fake: scaffold gap size wrong estimation (local) 7468822 7472727 846754 850659 CM091762.1 scaffold140 99.54 True indel: indel (> 5bp) 7472770 7473907 850687 851824 CM091762.1 scaffold140 99.82 True fake: scaffold gap size wrong estimation (local) 7474139 7524578 852234 903414 CM091762.1 scaffold140 99.86 True local misassembly 7523572 7574545 903415 955545 CM091762.1 scaffold140 97.8 True indel: indel (> 5bp) 7574557 7590804 955549 972027 CM091762.1 scaffold140 98.99 True local misassembly 7591414 7600662 972155 981205 CM091762.1 scaffold140 96.69 True local misassembly 7600790 7616086 981576 996936 CM091762.1 scaffold140 98.45 True local misassembly 7616672 7663981 997578 1046389 CM091762.1 scaffold140 98.0 True indel: indel (> 5bp) 7664142 7673190 1046630 1055575 CM091762.1 scaffold140 97.81 True local misassembly 7673487 7745343 1056207 1128509 CM091762.1 scaffold140 98.78 True indel: indel (<= 5bp) 7745417 7781444 1128585 1165497 CM091762.1 scaffold140 98.63 True local misassembly 7781869 7797610 1165686 1182113 CM091762.1 scaffold140 98.44 True local misassembly 7798132 7822934 1182436 1207067 CM091762.1 scaffold140 97.97 True CONTIG scaffold140 1210847 correct 2594449 2595306 1860 1003 CM091765.1 scaffold145 99.65 True unknown 14719841 14720445 2493 3094 CM091752.1 scaffold145 97.02 True unknown CONTIG scaffold145 3859 mis_unaligned 27376 28068 599 1290 CM091766.1 scaffold112 99.28 True fake: scaffold gap size wrong estimation (local) 30377 266525 3426 241816 CM091766.1 scaffold112 99.53 True fake: scaffold gap size wrong estimation (local) 266671 322818 242555 302073 CM091766.1 scaffold112 99.68 True local misassembly 322234 402259 302080 386126 CM091766.1 scaffold112 98.16 True fake: scaffold gap size wrong estimation (local) 402411 448770 386809 433823 CM091766.1 scaffold112 99.73 True indel: indel (> 5bp) 449013 522631 434054 508497 CM091766.1 scaffold112 99.49 True indel: indel (> 5bp) 522691 799872 508546 790145 CM091766.1 scaffold112 98.97 True indel: indel (> 5bp) 799894 803609 790179 794197 CM091766.1 scaffold112 98.64 True fake: scaffold gap size wrong estimation (local) 803898 863346 795075 855660 CM091766.1 scaffold112 98.81 True fake: scaffold gap size wrong estimation (local) 863513 871936 856634 865631 CM091766.1 scaffold112 99.54 True local misassembly 871963 1117426 866113 1112932 CM091766.1 scaffold112 99.23 True indel: indel (> 5bp) 1117604 1320894 1113124 1319063 CM091766.1 scaffold112 98.46 True local misassembly 1320282 1334538 1319064 1333322 CM091766.1 scaffold112 99.5 True inversion 1318543 1320894 1335627 1333328 CM091766.1 scaffold112 96.78 True local misassembly 1318067 1320478 1338042 1335628 CM091766.1 scaffold112 99.05 True relocation, inconsistency = 14908 1335387 1338004 1338043 1340661 CM091766.1 scaffold112 99.62 True fake: scaffold gap size wrong estimation (local) 1338122 1415923 1340780 1419444 CM091766.1 scaffold112 98.24 True indel: indel (<= 5bp) 1415932 1540993 1419451 1545547 CM091766.1 scaffold112 99.42 True fake: scaffold gap size wrong estimation (local) 1541251 1570579 1546713 1576043 CM091766.1 scaffold112 99.48 True indel: indel (<= 5bp) 1570641 1683759 1576101 1690304 CM091766.1 scaffold112 98.31 True indel: indel (> 5bp) 1683783 1822369 1690358 1830029 CM091766.1 scaffold112 98.74 True indel: indel (> 5bp) 1822481 1899842 1830180 1908415 CM091766.1 scaffold112 99.04 True fake: scaffold gap size wrong estimation (local) 1900247 1900884 1908856 1909493 CM091766.1 scaffold112 99.37 True fake: scaffold gap size wrong estimation (local) 1901266 1901877 1910294 1910905 CM091766.1 scaffold112 99.67 True local misassembly 1902129 2006031 1910988 2015748 CM091766.1 scaffold112 98.55 True indel: indel (<= 5bp) 2006096 2047636 2015816 2058291 CM091766.1 scaffold112 96.88 True indel: indel (> 5bp) 2047688 2068896 2058351 2079879 CM091766.1 scaffold112 97.7 True indel: indel (<= 5bp) 2068904 2069764 2079884 2080759 CM091766.1 scaffold112 95.81 True indel: indel (> 5bp) 2070198 2086391 2081181 2097962 CM091766.1 scaffold112 95.82 True fake: scaffold gap size wrong estimation (local) 2086486 2151393 2098341 2163591 CM091766.1 scaffold112 98.82 True indel: indel (<= 5bp) 2151435 2252805 2163638 2266881 CM091766.1 scaffold112 99.44 True fake: scaffold gap size wrong estimation (local) 2253745 2256639 2267752 2270638 CM091766.1 scaffold112 98.76 True local misassembly 2257016 2321519 2271213 2336198 CM091766.1 scaffold112 98.1 True indel: indel (> 5bp) 2321600 2409570 2336241 2424902 CM091766.1 scaffold112 99.0 True fake: scaffold gap size wrong estimation (local) 2410771 2460975 2426016 2476602 CM091766.1 scaffold112 97.98 True local misassembly 2461674 2507907 2477287 2523781 CM091766.1 scaffold112 97.76 True local misassembly 2507062 2573224 2523782 2591171 CM091766.1 scaffold112 98.46 True indel: indel (> 5bp) 2573329 2760606 2591282 2780227 CM091766.1 scaffold112 99.05 True indel: indel (> 5bp) 2760681 2923713 2780329 2944422 CM091766.1 scaffold112 99.2 True indel: indel (<= 5bp) 2923779 2962020 2944486 2983287 CM091766.1 scaffold112 96.92 True local misassembly 2961643 3108905 2983493 3132913 CM091766.1 scaffold112 98.91 True fake: scaffold gap size wrong estimation (local) 3109415 3127460 3133364 3151725 CM091766.1 scaffold112 99.57 True local misassembly 3125295 3149620 3151735 3178505 CM091766.1 scaffold112 99.12 True fake: scaffold gap size wrong estimation (local) 3150361 3152622 3179627 3181936 CM091766.1 scaffold112 98.76 True CONTIG scaffold112 3181936 misassembled 10029529 10140557 111750 1 CM091751.1 scaffold135 99.63 True fake: scaffold gap size wrong estimation (local) 9846512 10028914 297426 112821 CM091751.1 scaffold135 99.12 True local misassembly 9735428 9847227 415485 297466 CM091751.1 scaffold135 98.95 True fake: scaffold gap size wrong estimation (local) 9732406 9735333 418531 415604 CM091751.1 scaffold135 99.59 True local misassembly 9417074 9733415 746930 418532 CM091751.1 scaffold135 99.35 True fake: scaffold gap size wrong estimation (local) 9386954 9416903 778139 747796 CM091751.1 scaffold135 99.54 True fake: scaffold gap size wrong estimation (local) 9385995 9386745 779127 778347 CM091751.1 scaffold135 99.73 True fake: scaffold gap size wrong estimation (local) 9233136 9385855 937838 779476 CM091751.1 scaffold135 99.22 True relocation, inconsistency = 65326 9087263 9167809 1018362 937839 CM091751.1 scaffold135 99.64 True fake: not a misassembly (possible transposable element) 22984 23795 1018363 1019161 JBEUIP010000036.1 scaffold135 97.3 True fake: not a misassembly (possible transposable element) 9048778 9087096 1060059 1019273 CM091751.1 scaffold135 99.49 True indel: indel (> 5bp) 8932881 9048633 1178897 1060198 CM091751.1 scaffold135 99.1 True indel: indel (> 5bp) 8926928 8932830 1184868 1178955 CM091751.1 scaffold135 99.64 True fake: scaffold gap size wrong estimation (local) 8920289 8926651 1191755 1185350 CM091751.1 scaffold135 99.72 True fake: scaffold gap size wrong estimation (local) 8913152 8919822 1199678 1192712 CM091751.1 scaffold135 99.12 True fake: scaffold gap size wrong estimation (local) 8790941 8913010 1328996 1200485 CM091751.1 scaffold135 99.03 True indel: indel (> 5bp) 8778245 8790776 1342386 1329167 CM091751.1 scaffold135 99.35 True fake: scaffold gap size wrong estimation (local) 8737454 8778104 1385616 1342993 CM091751.1 scaffold135 99.54 True fake: scaffold gap size wrong estimation (local) 8650397 8737271 1474724 1386615 CM091751.1 scaffold135 99.61 True fake: scaffold gap size wrong estimation (local) 8638198 8650290 1487956 1474844 CM091751.1 scaffold135 99.16 True fake: scaffold gap size wrong estimation (local) 8626890 8638043 1500033 1488871 CM091751.1 scaffold135 99.73 True fake: scaffold gap size wrong estimation (local) 8596842 8626626 1531146 1501116 CM091751.1 scaffold135 99.48 True indel: indel (<= 5bp) 8556083 8596636 1571959 1531353 CM091751.1 scaffold135 99.67 True indel: indel (> 5bp) 8512138 8556051 1615980 1572015 CM091751.1 scaffold135 99.59 True local misassembly 8455034 8513083 1677965 1615998 CM091751.1 scaffold135 99.43 True fake: scaffold gap size wrong estimation (local) 8432543 8454890 1700449 1678099 CM091751.1 scaffold135 99.38 True fake: scaffold gap size wrong estimation (local) 8429209 8432278 1704327 1701258 CM091751.1 scaffold135 99.45 True local misassembly 8402690 8430238 1732402 1704328 CM091751.1 scaffold135 99.24 True fake: scaffold gap size wrong estimation (local) 8073607 8402559 2068186 1733174 CM091751.1 scaffold135 99.5 True indel: indel (> 5bp) 7842886 8073452 2306972 2068380 CM091751.1 scaffold135 99.29 True local misassembly 7808514 7844157 2342911 2306973 CM091751.1 scaffold135 98.71 True indel: indel (<= 5bp) 7767949 7808455 2385148 2342967 CM091751.1 scaffold135 97.86 True local misassembly 7707479 7768562 2446202 2385149 CM091751.1 scaffold135 99.4 True fake: scaffold gap size wrong estimation (local) 7603155 7707504 2551161 2446810 CM091751.1 scaffold135 99.54 True local misassembly 7541308 7602539 2612796 2551162 CM091751.1 scaffold135 99.43 True indel: indel (> 5bp) 7463750 7541208 2690602 2612907 CM091751.1 scaffold135 99.4 True fake: scaffold gap size wrong estimation (local) 7447209 7463606 2707498 2691004 CM091751.1 scaffold135 99.36 True indel: indel (<= 5bp) 7432363 7447132 2723058 2707576 CM091751.1 scaffold135 98.29 True indel: indel (> 5bp) 7359517 7431938 2797531 2723491 CM091751.1 scaffold135 99.15 True local misassembly 7233034 7359343 2927356 2797867 CM091751.1 scaffold135 99.29 True indel: indel (> 5bp) 7186337 7232984 2974135 2927397 CM091751.1 scaffold135 98.81 True indel: indel (> 5bp) 7163686 7186294 2996854 2974215 CM091751.1 scaffold135 99.38 True fake: scaffold gap size wrong estimation (local) 7159105 7163214 3002124 2997994 CM091751.1 scaffold135 99.13 True fake: scaffold gap size wrong estimation (local) 7152640 7159213 3009617 3003043 CM091751.1 scaffold135 99.73 True fake: scaffold gap size wrong estimation (local) 7024374 7152502 3139991 3010122 CM091751.1 scaffold135 99.2 True indel: indel (> 5bp) 7023691 7024292 3140686 3140085 CM091751.1 scaffold135 98.67 True indel: indel (<= 5bp) 6998475 7023496 3165998 3140884 CM091751.1 scaffold135 98.8 True indel: indel (> 5bp) 6957636 6998415 3207305 3166070 CM091751.1 scaffold135 99.02 True local misassembly 6887678 6957556 3278514 3207743 CM091751.1 scaffold135 98.36 True indel: indel (> 5bp) 6836472 6887565 3329737 3278643 CM091751.1 scaffold135 98.38 True local misassembly 6799077 6837552 3368482 3329738 CM091751.1 scaffold135 98.63 True local misassembly 6742677 6798681 3425314 3369079 CM091751.1 scaffold135 99.36 True local misassembly 6703078 6742628 3466553 3425672 CM091751.1 scaffold135 98.55 True indel: indel (> 5bp) 6697761 6702914 3471792 3466642 CM091751.1 scaffold135 99.09 True local misassembly 6683056 6693272 3482212 3471999 CM091751.1 scaffold135 99.34 True CONTIG scaffold135 3482212 misassembled 248440 255658 7218 1 CM091753.1 scaffold148 99.96 True fake: scaffold gap size wrong estimation (local) 246350 247995 9318 7673 CM091753.1 scaffold148 100.0 True fake: scaffold gap size wrong estimation (local) 245639 246254 10043 9428 CM091753.1 scaffold148 100.0 True local misassembly 226350 245143 29426 10583 CM091753.1 scaffold148 99.56 True CONTIG scaffold148 29426 correct 4488635 4490758 1 2125 CM091754.1 scaffold149 99.72 True CONTIG scaffold149 2249 correct CONTIG scaffold147 789 unaligned 20726234 20729815 3602 1 CM091751.1 scaffold150 99.51 True translocation 2093501 2133672 43772 3603 CM091754.1 scaffold150 99.89 True fake: scaffold gap size wrong estimation (local) 2062535 2091354 75438 46610 CM091754.1 scaffold150 99.81 True local misassembly 1991548 2064226 148630 75439 CM091754.1 scaffold150 97.64 True CONTIG scaffold150 148630 misassembled 4334326 4335606 1308 1 CM091754.1 scaffold152 97.94 True CONTIG scaffold152 1308 correct 2801474 2883386 1 83344 CM091755.1 scaffold116 97.87 True indel: indel (> 5bp) 2883449 2982603 83440 183799 CM091755.1 scaffold116 99.03 True fake: scaffold gap size wrong estimation (local) 2982691 3303174 184477 506517 CM091755.1 scaffold116 99.32 True indel: indel (> 5bp) 3303224 3549368 506587 753373 CM091755.1 scaffold116 99.05 True local misassembly 3548394 3658533 753374 863465 CM091755.1 scaffold116 99.03 True fake: scaffold gap size wrong estimation (local) 3658836 3659442 864095 864701 CM091755.1 scaffold116 98.85 True local misassembly 3660073 3660725 865330 865982 CM091755.1 scaffold116 100.0 True indel: indel (<= 5bp) 3660726 3661286 865984 866544 CM091755.1 scaffold116 99.64 True local misassembly 3661654 3662228 867643 868217 CM091755.1 scaffold116 99.48 True indel: indel (<= 5bp) 3662229 3664266 868219 870256 CM091755.1 scaffold116 99.66 True indel: indel (<= 5bp) 3664267 3664900 870258 870891 CM091755.1 scaffold116 99.53 True indel: indel (> 5bp) 3664901 3665616 870904 871619 CM091755.1 scaffold116 99.44 True indel: indel (<= 5bp) 3665617 3668764 871621 874768 CM091755.1 scaffold116 99.94 True indel: indel (> 5bp) 3669184 3685763 875135 892105 CM091755.1 scaffold116 96.76 True local misassembly 3684747 3687888 892115 895260 CM091755.1 scaffold116 99.14 True indel: indel (> 5bp) 3688035 3692497 895338 899799 CM091755.1 scaffold116 99.66 True local misassembly 3692488 3704717 899970 912041 CM091755.1 scaffold116 98.52 True local misassembly 3704928 3705580 912598 913250 CM091755.1 scaffold116 99.69 True local misassembly 3704960 3803335 913251 1012075 CM091755.1 scaffold116 98.95 True fake: scaffold gap size wrong estimation (local) 3807037 3821259 1014802 1028898 CM091755.1 scaffold116 97.54 True indel: indel (> 5bp) 3821424 3824054 1029040 1031677 CM091755.1 scaffold116 99.36 True fake: scaffold gap size wrong estimation (local) 3824157 3851861 1032212 1059857 CM091755.1 scaffold116 99.36 True local misassembly 3852105 3861792 1060231 1069922 CM091755.1 scaffold116 99.31 True indel: indel (> 5bp) 3861933 3864779 1070071 1072915 CM091755.1 scaffold116 99.47 True local misassembly 3865202 4180781 1072916 1390569 CM091755.1 scaffold116 99.13 True indel: indel (> 5bp) 4181061 4182020 1390860 1391819 CM091755.1 scaffold116 99.9 True indel: indel (> 5bp) 4182206 4184231 1391989 1394014 CM091755.1 scaffold116 99.85 True indel: indel (<= 5bp) 4184245 4186942 1394032 1396729 CM091755.1 scaffold116 99.41 True indel: indel (<= 5bp) 4186943 4188959 1396731 1398747 CM091755.1 scaffold116 99.8 True indel: indel (<= 5bp) 4188961 4190289 1398748 1400076 CM091755.1 scaffold116 99.77 True local misassembly 4190879 4191678 1400661 1401460 CM091755.1 scaffold116 99.88 True indel: indel (<= 5bp) 4191679 4193667 1401462 1403450 CM091755.1 scaffold116 99.55 True indel: indel (<= 5bp) 4193672 4196212 1403451 1405991 CM091755.1 scaffold116 99.8 True indel: indel (<= 5bp) 4196213 4197112 1405993 1406892 CM091755.1 scaffold116 100.0 True indel: indel (<= 5bp) 4197113 4198236 1406894 1408017 CM091755.1 scaffold116 99.2 True indel: indel (> 5bp) 4198254 4200205 1408018 1409969 CM091755.1 scaffold116 99.85 True fake: scaffold gap size wrong estimation (local) 4200206 4200986 1410761 1411541 CM091755.1 scaffold116 99.49 True indel: indel (<= 5bp) 4201406 4202424 1411963 1412981 CM091755.1 scaffold116 99.61 True indel: indel (> 5bp) 4202425 4205988 1412995 1416558 CM091755.1 scaffold116 99.55 True indel: indel (> 5bp) 4205989 4207938 1416567 1418516 CM091755.1 scaffold116 99.64 True indel: indel (<= 5bp) 4208207 4209304 1418786 1419883 CM091755.1 scaffold116 99.64 True local misassembly 4210161 4211349 1420740 1421928 CM091755.1 scaffold116 99.16 True local misassembly 4211350 4212512 1422680 1423842 CM091755.1 scaffold116 99.83 True indel: indel (<= 5bp) 4212770 4213764 1424103 1425097 CM091755.1 scaffold116 99.6 True indel: stretch of mismatches 4213886 4215633 1425219 1426966 CM091755.1 scaffold116 99.71 True indel: indel (> 5bp) 4215649 4216926 1426967 1428244 CM091755.1 scaffold116 99.84 True indel: indel (<= 5bp) 4216927 4218315 1428246 1429634 CM091755.1 scaffold116 99.64 True local misassembly 4218417 4218933 1431241 1431757 CM091755.1 scaffold116 99.61 True indel: indel (<= 5bp) 4218938 4220538 1431758 1433358 CM091755.1 scaffold116 99.88 True local misassembly 4221265 4283791 1434102 1497756 CM091755.1 scaffold116 99.37 True local misassembly 4282917 4344294 1497765 1560373 CM091755.1 scaffold116 97.79 True indel: indel (> 5bp) 4344323 4398642 1560374 1615459 CM091755.1 scaffold116 98.32 True local misassembly 4398820 4487588 1615520 1705286 CM091755.1 scaffold116 99.48 True indel: indel (> 5bp) 4487744 4549608 1705465 1767841 CM091755.1 scaffold116 99.0 True local misassembly 4547930 4671342 1767842 1891984 CM091755.1 scaffold116 99.44 True indel: indel (> 5bp) 4671416 4964451 1892028 2189572 CM091755.1 scaffold116 98.77 True fake: scaffold gap size wrong estimation (local) 4965119 5140314 2190042 2365246 CM091755.1 scaffold116 96.99 True local misassembly 5138404 5292364 2365247 2521803 CM091755.1 scaffold116 99.07 True indel: indel (> 5bp) 5292415 5301946 2521863 2531400 CM091755.1 scaffold116 99.33 True indel: indel (<= 5bp) 5302001 5336755 2531456 2567286 CM091755.1 scaffold116 97.94 True local misassembly 5335743 5571177 2567287 2809970 CM091755.1 scaffold116 99.1 True fake: scaffold gap size wrong estimation (local) 5571285 5758704 2810883 3002885 CM091755.1 scaffold116 98.99 True indel: indel (> 5bp) 5758968 5811533 3003210 3055807 CM091755.1 scaffold116 99.3 True indel: indel (<= 5bp) 5811543 5929549 3055821 3175952 CM091755.1 scaffold116 99.35 True fake: scaffold gap size wrong estimation (local) 5929655 5960819 3176760 3209772 CM091755.1 scaffold116 98.18 True local misassembly 5959851 6004319 3209773 3255736 CM091755.1 scaffold116 99.14 True local misassembly 6003290 6005599 3255737 3258053 CM091755.1 scaffold116 99.31 True fake: scaffold gap size wrong estimation (local) 6005736 6031548 3258969 3285643 CM091755.1 scaffold116 99.29 True fake: scaffold gap size wrong estimation (local) 6031706 6130523 3286127 3387459 CM091755.1 scaffold116 98.83 True indel: indel (> 5bp) 6130592 6213707 3387518 3471421 CM091755.1 scaffold116 99.38 True CONTIG scaffold116 3471475 correct CONTIG scaffold154 385 unaligned 4372247 4418263 45880 1 CM091760.1 scaffold146 99.37 True indel: indel (> 5bp) 4353207 4372154 64649 45961 CM091760.1 scaffold146 97.36 True indel: indel (> 5bp) 4313681 4353185 105607 64689 CM091760.1 scaffold146 99.14 True indel: stretch of mismatches 4151164 4313668 270627 105620 CM091760.1 scaffold146 98.95 True fake: scaffold gap size wrong estimation (local) 4113130 4150468 308937 271580 CM091760.1 scaffold146 99.38 True indel: indel (> 5bp) 4034386 4113047 389974 308998 CM091760.1 scaffold146 99.09 True indel: indel (> 5bp) 4009090 4034353 416668 390021 CM091760.1 scaffold146 99.34 True local misassembly 3961673 4009727 464738 416669 CM091760.1 scaffold146 99.01 True fake: scaffold gap size wrong estimation (local) 3956992 3961451 470501 466039 CM091760.1 scaffold146 99.31 True indel: indel (> 5bp) 3811461 3956745 617017 470706 CM091760.1 scaffold146 99.12 True fake: not a misassembly (possible transposable element) 8884514 8885350 617018 617848 CM091755.1 scaffold146 97.14 True fake: not a misassembly (possible transposable element) 3758203 3811378 670990 617871 CM091760.1 scaffold146 99.2 True indel: indel (<= 5bp) 3727702 3758159 701399 671036 CM091760.1 scaffold146 98.92 True CONTIG scaffold146 701399 correct 9284001 9285254 405 1658 CM091767.1 scaffold156 99.92 True local misassembly 9286119 9287937 2593 4441 CM091767.1 scaffold156 96.22 True fake: scaffold gap size wrong estimation (local) 9288311 9299071 5293 16233 CM091767.1 scaffold156 98.91 True relocation, inconsistency = -458025 8853076 8854033 28263 29220 CM091767.1 scaffold156 95.3 True translocation 641981 643348 32078 30711 CM091755.1 scaffold156 99.27 True translocation 8022677 8023463 32876 32081 CM091767.1 scaffold156 96.73 True CONTIG scaffold156 32876 misassembled 4835125 5449992 620178 38 CM091757.1 scaffold151 98.6 True local misassembly 4588526 4835649 867703 620238 CM091757.1 scaffold151 99.52 True local misassembly 4551422 4588083 905724 868421 CM091757.1 scaffold151 99.52 True indel: indel (> 5bp) 4331737 4551306 1123306 905857 CM091757.1 scaffold151 97.8 True fake: scaffold gap size wrong estimation (local) 4322800 4331653 1132302 1123445 CM091757.1 scaffold151 99.74 True CONTIG scaffold151 1132350 correct 16481 17754 1302 1 CM091752.1 scaffold157 96.63 True CONTIG scaffold157 1302 correct 17646194 17665263 19130 1 CM091751.1 scaffold158 99.55 True fake: scaffold gap size wrong estimation (local) 17636567 17645693 29204 19496 CM091751.1 scaffold158 97.82 True fake: scaffold gap size wrong estimation (local) 17621282 17636161 45181 30296 CM091751.1 scaffold158 99.95 True local misassembly 17578922 17620913 87970 45790 CM091751.1 scaffold158 99.86 True fake: scaffold gap size wrong estimation (local) 17560809 17578767 107102 88952 CM091751.1 scaffold158 98.96 True translocation, scaffold gap is present 7989627 7990549 108725 109647 CM091767.1 scaffold158 100.0 True CONTIG scaffold158 109727 misassembled 11956200 11985448 951 31192 CM091756.1 scaffold155 98.86 True indel: indel (<= 5bp) 11985690 12032863 31438 80880 CM091756.1 scaffold155 99.13 True indel: indel (> 5bp) 12032937 12136049 80969 185307 CM091756.1 scaffold155 99.02 True indel: indel (> 5bp) 12136284 12150337 185605 199251 CM091756.1 scaffold155 96.83 True local misassembly 12150963 12156727 199915 205681 CM091756.1 scaffold155 99.79 True indel: indel (> 5bp) 12156840 12158420 205738 207318 CM091756.1 scaffold155 99.49 True indel: indel (<= 5bp) 12158422 12159151 207319 208048 CM091756.1 scaffold155 99.18 True indel: indel (> 5bp) 12159343 12160946 208249 209852 CM091756.1 scaffold155 99.25 True indel: indel (<= 5bp) 12161018 12161833 209928 210743 CM091756.1 scaffold155 99.51 True indel: indel (> 5bp) 12161834 12162762 210755 211683 CM091756.1 scaffold155 99.68 True indel: indel (> 5bp) 12163247 12163980 212176 212909 CM091756.1 scaffold155 99.73 True indel: indel (<= 5bp) 12163981 12166889 212911 215819 CM091756.1 scaffold155 99.55 True indel: indel (> 5bp) 12166890 12167896 215838 216844 CM091756.1 scaffold155 99.3 True indel: indel (<= 5bp) 12167898 12172086 216845 221033 CM091756.1 scaffold155 99.71 True fake: scaffold gap size wrong estimation (local) 12173065 12174761 222474 224170 CM091756.1 scaffold155 99.23 True local misassembly 12175668 12177627 225061 227020 CM091756.1 scaffold155 99.49 True indel: indel (<= 5bp) 12177629 12178560 227021 227952 CM091756.1 scaffold155 99.68 True indel: indel (<= 5bp) 12178561 12181581 227956 230976 CM091756.1 scaffold155 99.8 True local misassembly 12182138 12183347 231514 232723 CM091756.1 scaffold155 99.34 True indel: indel (<= 5bp) 12183349 12183927 232724 233302 CM091756.1 scaffold155 100.0 True indel: indel (<= 5bp) 12183930 12188487 233303 237860 CM091756.1 scaffold155 99.82 True local misassembly 12188488 12189218 238098 238828 CM091756.1 scaffold155 99.86 True indel: indel (> 5bp) 12189560 12190212 239186 239838 CM091756.1 scaffold155 99.39 True local misassembly 12190935 12191831 240553 241449 CM091756.1 scaffold155 99.89 True indel: stretch of mismatches 12192180 12194749 241798 244367 CM091756.1 scaffold155 99.81 True fake: scaffold gap size wrong estimation (local) 12194750 12195431 246374 247055 CM091756.1 scaffold155 100.0 True indel: indel (<= 5bp) 12195434 12196528 247056 248150 CM091756.1 scaffold155 99.54 True fake: scaffold gap size wrong estimation (local) 12198250 12203558 249529 254746 CM091756.1 scaffold155 95.81 True fake: scaffold gap size wrong estimation (local) 12204130 12211177 255395 262634 CM091756.1 scaffold155 96.62 True local misassembly 12210344 12222308 262635 274601 CM091756.1 scaffold155 99.62 True fake: scaffold gap size wrong estimation (local) 12222424 12230493 274703 282796 CM091756.1 scaffold155 98.7 True fake: scaffold gap size wrong estimation (local) 12233629 12289142 287580 343130 CM091756.1 scaffold155 99.64 True CONTIG scaffold155 343132 correct 13762898 13763504 1 629 CM091758.1 scaffold161 95.71 True CONTIG scaffold161 629 correct 5145898 5178400 32 33373 CM091766.1 scaffold139 98.43 True indel: indel (> 5bp) 5178484 5251306 33440 107442 CM091766.1 scaffold139 96.55 True local misassembly 5250662 5266099 107461 123361 CM091766.1 scaffold139 98.69 True indel: indel (> 5bp) 5266223 5286180 123469 143380 CM091766.1 scaffold139 98.64 True indel: stretch of mismatches 5286181 5321645 143381 179585 CM091766.1 scaffold139 96.02 True local misassembly 5321028 5498505 179586 358200 CM091766.1 scaffold139 97.48 True local misassembly 5498876 5515260 358723 375107 CM091766.1 scaffold139 99.01 True local misassembly 5515758 5580021 375742 440249 CM091766.1 scaffold139 98.08 True indel: indel (> 5bp) 5580079 5622870 440284 483668 CM091766.1 scaffold139 98.07 True local misassembly 5622981 5623809 483686 484538 CM091766.1 scaffold139 95.43 True indel: indel (> 5bp) 5623865 5638995 484605 499332 CM091766.1 scaffold139 96.33 True indel: indel (> 5bp) 5639093 5648339 499437 508389 CM091766.1 scaffold139 96.03 True local misassembly 5648373 5697102 508581 557912 CM091766.1 scaffold139 98.13 True indel: indel (> 5bp) 5697153 5735999 557979 597593 CM091766.1 scaffold139 97.36 True local misassembly 5735168 6096026 597594 961911 CM091766.1 scaffold139 99.13 True local misassembly 6096181 6281786 961970 1148821 CM091766.1 scaffold139 99.05 True indel: indel (> 5bp) 6281822 6439981 1148875 1309217 CM091766.1 scaffold139 98.13 True fake: scaffold gap size wrong estimation (local) 6440080 6468997 1310218 1339091 CM091766.1 scaffold139 98.61 True indel: indel (> 5bp) 6469291 6522715 1339402 1392722 CM091766.1 scaffold139 98.65 True indel: indel (> 5bp) 6522864 6653407 1392788 1525277 CM091766.1 scaffold139 98.64 True local misassembly 6652744 6809391 1525282 1684096 CM091766.1 scaffold139 98.66 True indel: indel (> 5bp) 6809475 6862488 1684168 1738595 CM091766.1 scaffold139 99.14 True fake: scaffold gap size wrong estimation (local) 6862591 6966154 1739143 1846304 CM091766.1 scaffold139 99.06 True fake: scaffold gap size wrong estimation (local) 6966264 7029508 1846935 1911573 CM091766.1 scaffold139 99.43 True fake: scaffold gap size wrong estimation (local) 7029594 7151503 1912481 2036103 CM091766.1 scaffold139 98.3 True indel: indel (> 5bp) 7151609 7257718 2036276 2145579 CM091766.1 scaffold139 98.85 True fake: scaffold gap size wrong estimation (local) 7257841 7363256 2146617 2253721 CM091766.1 scaffold139 98.65 True indel: indel (> 5bp) 7363395 7506993 2253847 2400335 CM091766.1 scaffold139 99.47 True fake: scaffold gap size wrong estimation (local) 7507337 7657752 2400876 2551058 CM091766.1 scaffold139 99.32 True indel: indel (> 5bp) 7657830 7940926 2551098 2841021 CM091766.1 scaffold139 99.32 True local misassembly 7940338 8063164 2841037 2966753 CM091766.1 scaffold139 99.63 True fake: scaffold gap size wrong estimation (local) 8063255 8144484 2967233 3049521 CM091766.1 scaffold139 98.96 True fake: scaffold gap size wrong estimation (local) 8145540 8151691 3050997 3057140 CM091766.1 scaffold139 99.71 True fake: scaffold gap size wrong estimation (local) 8151786 8203178 3057395 3112781 CM091766.1 scaffold139 99.57 True fake: scaffold gap size wrong estimation (local) 8203660 8205591 3113827 3115758 CM091766.1 scaffold139 99.59 True CONTIG scaffold139 3115758 correct 2064584 2067131 2853 302 CM091752.1 scaffold153 99.76 True local misassembly 2025972 2063768 41699 3863 CM091752.1 scaffold153 99.25 True indel: indel (> 5bp) 2024770 2025788 42906 41890 CM091752.1 scaffold153 99.61 True fake: scaffold gap size wrong estimation (local) 1950913 2024680 118026 43412 CM091752.1 scaffold153 97.35 True fake: scaffold gap size wrong estimation (local) 1949135 1950066 119940 119009 CM091752.1 scaffold153 98.5 True indel: indel (<= 5bp) 1948166 1949134 120910 119942 CM091752.1 scaffold153 99.79 True local misassembly 1945627 1946503 123462 122586 CM091752.1 scaffold153 99.43 True indel: indel (<= 5bp) 1944371 1945597 124722 123496 CM091752.1 scaffold153 98.94 True local misassembly 1940531 1942303 126952 125180 CM091752.1 scaffold153 98.65 True fake: scaffold gap size wrong estimation (local) 1939437 1940138 128045 127344 CM091752.1 scaffold153 99.57 True indel: indel (<= 5bp) 1937711 1939436 129772 128047 CM091752.1 scaffold153 99.71 True local misassembly 1935730 1936789 131520 130461 CM091752.1 scaffold153 99.72 True local misassembly 1933414 1935002 133844 132256 CM091752.1 scaffold153 99.18 True local misassembly 1930882 1932118 137434 136198 CM091752.1 scaffold153 99.11 True local misassembly 1852698 1930060 219099 137557 CM091752.1 scaffold153 98.89 True fake: scaffold gap size wrong estimation (local) 1849756 1850305 221832 221283 CM091752.1 scaffold153 98.91 True indel: indel (<= 5bp) 1848866 1849444 222724 222146 CM091752.1 scaffold153 99.83 True local misassembly 1818199 1847986 254090 223624 CM091752.1 scaffold153 97.78 True fake: scaffold gap size wrong estimation (local) 1815669 1816589 257229 256309 CM091752.1 scaffold153 99.57 True indel: indel (<= 5bp) 1814162 1815664 258732 257230 CM091752.1 scaffold153 99.6 True local misassembly 1811699 1813265 260668 259102 CM091752.1 scaffold153 98.6 True indel: indel (> 5bp) 1810897 1811691 261463 260669 CM091752.1 scaffold153 97.86 True fake: scaffold gap size wrong estimation (local) 1807264 1808201 265199 264262 CM091752.1 scaffold153 99.57 True indel: indel (<= 5bp) 1806268 1806791 266194 265671 CM091752.1 scaffold153 99.62 True fake: scaffold gap size wrong estimation (local) 1804651 1805898 268040 266793 CM091752.1 scaffold153 98.72 True fake: scaffold gap size wrong estimation (local) 1803044 1804320 269666 268390 CM091752.1 scaffold153 99.69 True indel: indel (> 5bp) 1802174 1803033 270544 269685 CM091752.1 scaffold153 99.77 True indel: indel (<= 5bp) 1801294 1802173 271425 270546 CM091752.1 scaffold153 99.09 True local misassembly 1799239 1799789 272920 272370 CM091752.1 scaffold153 99.46 True indel: indel (<= 5bp) 1796516 1799237 275642 272921 CM091752.1 scaffold153 99.89 True indel: indel (<= 5bp) 1794983 1796215 277178 275946 CM091752.1 scaffold153 99.76 True indel: indel (<= 5bp) 1793980 1794981 278180 277179 CM091752.1 scaffold153 96.41 True fake: scaffold gap size wrong estimation (local) 1750335 1793642 321816 278556 CM091752.1 scaffold153 96.94 True local misassembly 1741025 1749507 331341 322614 CM091752.1 scaffold153 96.61 True fake: scaffold gap size wrong estimation (local) 1734397 1740234 337268 331633 CM091752.1 scaffold153 96.11 True fake: scaffold gap size wrong estimation (local) 1722940 1733559 348975 337986 CM091752.1 scaffold153 99.3 True fake: scaffold gap size wrong estimation (local) 1720799 1722790 351935 349942 CM091752.1 scaffold153 99.55 True fake: scaffold gap size wrong estimation (local) 1623054 1720696 451543 352592 CM091752.1 scaffold153 96.32 True fake: scaffold gap size wrong estimation (local) 1609607 1622859 465222 451945 CM091752.1 scaffold153 99.26 True local misassembly 1606604 1608652 468791 466743 CM091752.1 scaffold153 98.98 True fake: scaffold gap size wrong estimation (local) 1605777 1606603 470201 469375 CM091752.1 scaffold153 99.52 True indel: indel (<= 5bp) 1604878 1605776 471102 470204 CM091752.1 scaffold153 99.56 True fake: scaffold gap size wrong estimation (local) 1602248 1603611 473460 472097 CM091752.1 scaffold153 98.68 True indel: indel (<= 5bp) 1601271 1602247 474439 473463 CM091752.1 scaffold153 98.87 True local misassembly 1598789 1600587 476927 475129 CM091752.1 scaffold153 98.83 True local misassembly 1594279 1597706 481718 478427 CM091752.1 scaffold153 95.16 True local misassembly 1589853 1593099 485850 482613 CM091752.1 scaffold153 96.92 True local misassembly 1588552 1589184 487334 486702 CM091752.1 scaffold153 99.84 True fake: scaffold gap size wrong estimation (local) 1579457 1586456 495703 488674 CM091752.1 scaffold153 99.09 True local misassembly 1575953 1577300 498859 497512 CM091752.1 scaffold153 99.78 True indel: indel (<= 5bp) 1574441 1575952 500372 498861 CM091752.1 scaffold153 99.67 True local misassembly 1573093 1574374 502562 501281 CM091752.1 scaffold153 99.14 True indel: indel (> 5bp) 1571681 1572757 503958 502882 CM091752.1 scaffold153 98.7 True indel: indel (<= 5bp) 1570782 1571680 504858 503960 CM091752.1 scaffold153 99.78 True local misassembly 1569210 1570250 506419 505379 CM091752.1 scaffold153 99.52 True indel: indel (<= 5bp) 1568382 1569209 507248 506421 CM091752.1 scaffold153 99.52 True indel: indel (> 5bp) 1567443 1568313 508173 507303 CM091752.1 scaffold153 99.54 True indel: indel (> 5bp) 1566377 1567086 509216 508507 CM091752.1 scaffold153 99.3 True local misassembly 1562721 1564874 513041 510888 CM091752.1 scaffold153 98.1 True local misassembly 1559957 1561701 515201 513460 CM091752.1 scaffold153 99.6 True local misassembly 1555805 1558688 519248 516369 CM091752.1 scaffold153 98.62 True local misassembly 1554300 1554855 520605 520050 CM091752.1 scaffold153 99.46 True indel: indel (<= 5bp) 1553631 1554299 521275 520607 CM091752.1 scaffold153 99.7 True indel: indel (<= 5bp) 1551992 1553435 522916 521473 CM091752.1 scaffold153 99.72 True indel: indel (<= 5bp) 1551360 1551991 523549 522918 CM091752.1 scaffold153 99.68 True indel: indel (<= 5bp) 1550718 1551359 524192 523551 CM091752.1 scaffold153 100.0 True indel: indel (<= 5bp) 1549705 1550717 525206 524194 CM091752.1 scaffold153 99.9 True local misassembly 1548299 1549120 526614 525793 CM091752.1 scaffold153 99.51 True local misassembly 1546484 1547776 528429 527137 CM091752.1 scaffold153 99.69 True indel: indel (<= 5bp) 1545270 1546479 529639 528430 CM091752.1 scaffold153 99.09 True indel: indel (<= 5bp) 1543152 1545269 531758 529641 CM091752.1 scaffold153 98.82 True indel: indel (<= 5bp) 1542236 1543151 532675 531760 CM091752.1 scaffold153 99.78 True local misassembly 1537734 1540885 536508 533357 CM091752.1 scaffold153 99.71 True local misassembly 1536185 1536819 537577 536943 CM091752.1 scaffold153 97.95 True local misassembly 1535472 1536184 538482 537770 CM091752.1 scaffold153 98.6 True indel: indel (> 5bp) 1534546 1535471 539423 538498 CM091752.1 scaffold153 99.68 True local misassembly 1520854 1533389 552782 540293 CM091752.1 scaffold153 97.15 True local misassembly 1441884 1519579 634046 553859 CM091752.1 scaffold153 97.52 True local misassembly 1418605 1441562 656749 634172 CM091752.1 scaffold153 97.22 True fake: scaffold gap size wrong estimation (local) 1391726 1418442 684006 657281 CM091752.1 scaffold153 95.74 True local misassembly 1390091 1390875 685958 685174 CM091752.1 scaffold153 99.87 True indel: indel (<= 5bp) 1388644 1390089 687404 685959 CM091752.1 scaffold153 99.72 True local misassembly 1386642 1387551 689451 688542 CM091752.1 scaffold153 98.9 True indel: indel (<= 5bp) 1385628 1386187 690460 689901 CM091752.1 scaffold153 98.21 True fake: scaffold gap size wrong estimation (local) 1384463 1384965 692169 691667 CM091752.1 scaffold153 96.22 True fake: scaffold gap size wrong estimation (local) 1381639 1382306 695026 694359 CM091752.1 scaffold153 99.85 True indel: indel (<= 5bp) 1380019 1381638 696647 695028 CM091752.1 scaffold153 97.35 True indel: indel (<= 5bp) 1379096 1380018 697571 696649 CM091752.1 scaffold153 99.67 True local misassembly 1375860 1376968 700814 699706 CM091752.1 scaffold153 99.28 True indel: indel (<= 5bp) 1373714 1375858 702959 700815 CM091752.1 scaffold153 99.53 True indel: indel (<= 5bp) 1372941 1373580 703734 703095 CM091752.1 scaffold153 99.69 True indel: indel (> 5bp) 1371630 1372682 705057 704005 CM091752.1 scaffold153 99.43 True indel: indel (<= 5bp) 1371010 1371604 705679 705085 CM091752.1 scaffold153 98.66 True local misassembly 1351314 1370336 725793 706349 CM091752.1 scaffold153 99.13 True local misassembly 1351100 1353475 728699 726316 CM091752.1 scaffold153 98.62 True indel: indel (> 5bp) 1324184 1350960 755436 728847 CM091752.1 scaffold153 98.44 True local misassembly 1322792 1324092 757195 755895 CM091752.1 scaffold153 98.46 True indel: indel (> 5bp) 1320288 1322791 759707 757204 CM091752.1 scaffold153 99.6 True local misassembly 1319161 1319795 761000 760366 CM091752.1 scaffold153 100.0 True indel: indel (> 5bp) 1316277 1319160 763895 761012 CM091752.1 scaffold153 99.76 True local misassembly 1315352 1315939 764483 763896 CM091752.1 scaffold153 96.09 True local misassembly 1314453 1315098 765509 764864 CM091752.1 scaffold153 99.69 True local misassembly 1311711 1312212 767466 766965 CM091752.1 scaffold153 98.21 True local misassembly 1310037 1311017 769163 768183 CM091752.1 scaffold153 98.98 True indel: indel (<= 5bp) 1309366 1310036 769835 769165 CM091752.1 scaffold153 99.4 True local misassembly 1306724 1307711 772544 771557 CM091752.1 scaffold153 99.19 True local misassembly 1304470 1305709 774803 773564 CM091752.1 scaffold153 99.27 True indel: indel (<= 5bp) 1303747 1304469 775528 774806 CM091752.1 scaffold153 99.03 True local misassembly 1301117 1302580 777316 775853 CM091752.1 scaffold153 99.86 True indel: stretch of mismatches 1298918 1300688 779515 777745 CM091752.1 scaffold153 99.83 True local misassembly 1297842 1298367 780591 780066 CM091752.1 scaffold153 99.24 True indel: indel (> 5bp) 1296756 1297841 781683 780598 CM091752.1 scaffold153 99.82 True indel: indel (<= 5bp) 1295989 1296754 782449 781684 CM091752.1 scaffold153 99.74 True indel: indel (<= 5bp) 1294602 1295870 783838 782570 CM091752.1 scaffold153 99.68 True fake: scaffold gap size wrong estimation (local) 1291564 1293882 787683 785365 CM091752.1 scaffold153 99.7 True indel: indel (<= 5bp) 1290618 1291561 788627 787684 CM091752.1 scaffold153 98.83 True local misassembly 1289293 1290104 790019 789208 CM091752.1 scaffold153 99.01 True indel: indel (<= 5bp) 1287948 1289288 791360 790020 CM091752.1 scaffold153 99.4 True local misassembly 1285651 1286447 792718 791922 CM091752.1 scaffold153 99.62 True indel: indel (<= 5bp) 1284810 1285650 793562 792722 CM091752.1 scaffold153 98.57 True local misassembly 1273418 1284182 805106 794351 CM091752.1 scaffold153 99.29 True indel: indel (<= 5bp) 1271763 1273265 806755 805258 CM091752.1 scaffold153 98.74 True local misassembly 1270559 1271736 808146 806969 CM091752.1 scaffold153 99.24 True indel: indel (<= 5bp) 1269388 1270226 809313 808475 CM091752.1 scaffold153 99.17 True local misassembly 1268014 1268634 810321 809701 CM091752.1 scaffold153 99.19 True indel: indel (<= 5bp) 1267484 1268012 810850 810322 CM091752.1 scaffold153 99.81 True indel: indel (<= 5bp) 1266982 1267483 811353 810852 CM091752.1 scaffold153 96.22 True local misassembly 1264549 1266466 813626 811709 CM091752.1 scaffold153 99.58 True local misassembly 1263250 1263797 814926 814379 CM091752.1 scaffold153 99.82 True indel: indel (<= 5bp) 1260473 1263249 817704 814928 CM091752.1 scaffold153 99.42 True local misassembly 1257572 1258993 820603 819182 CM091752.1 scaffold153 99.37 True indel: indel (<= 5bp) 1255531 1257570 822643 820604 CM091752.1 scaffold153 99.51 True indel: indel (<= 5bp) 1253634 1255530 824541 822645 CM091752.1 scaffold153 99.63 True indel: indel (<= 5bp) 1251200 1253633 826976 824543 CM091752.1 scaffold153 99.01 True local misassembly 1249533 1250724 828246 827055 CM091752.1 scaffold153 98.99 True indel: indel (<= 5bp) 1247743 1249531 830035 828247 CM091752.1 scaffold153 99.78 True local misassembly 1246192 1246872 831231 830548 CM091752.1 scaffold153 98.1 True local misassembly 1244596 1245324 832472 831744 CM091752.1 scaffold153 99.59 True local misassembly 1223367 1243579 854020 833488 CM091752.1 scaffold153 96.37 True local misassembly 1220992 1222328 856516 855180 CM091752.1 scaffold153 98.73 True local misassembly 1217733 1219658 859419 857494 CM091752.1 scaffold153 99.58 True indel: indel (<= 5bp) 1216941 1217721 860208 859428 CM091752.1 scaffold153 99.36 True local misassembly 1215542 1216402 861595 860735 CM091752.1 scaffold153 98.95 True local misassembly 1213699 1214624 863597 862672 CM091752.1 scaffold153 100.0 True CONTIG scaffold153 863597 correct 4246226 4251057 4832 1 CM091768.1 scaffold164 99.88 True local misassembly 4239997 4247333 12216 4833 CM091768.1 scaffold164 98.84 True local misassembly 4240776 4241528 12969 12217 CM091768.1 scaffold164 99.87 True CONTIG scaffold164 12969 correct 5961090 6055171 90744 677 CM091754.1 scaffold162 95.23 True local misassembly 5731844 5962114 321946 90745 CM091754.1 scaffold162 99.21 True CONTIG scaffold162 321946 correct 7507271 7522446 16809 1704 CM091756.1 scaffold142 98.18 True indel: indel (> 5bp) 7215650 7507198 310613 16871 CM091756.1 scaffold142 98.82 True local misassembly 7213092 7218493 316069 310630 CM091756.1 scaffold142 98.13 True fake: scaffold gap size wrong estimation (local) 7166362 7213349 364733 316579 CM091756.1 scaffold142 98.36 True indel: indel (> 5bp) 7139529 7166297 391597 364814 CM091756.1 scaffold142 99.66 True fake: scaffold gap size wrong estimation (local) 7135353 7139185 396249 392164 CM091756.1 scaffold142 98.47 True indel: indel (> 5bp) 7111995 7135328 420066 396305 CM091756.1 scaffold142 98.77 True indel: indel (> 5bp) 7042126 7111987 490432 420084 CM091756.1 scaffold142 99.1 True indel: indel (> 5bp) 7001239 7042069 531948 490521 CM091756.1 scaffold142 98.35 True local misassembly 6659653 7000389 878585 532821 CM091756.1 scaffold142 99.39 True fake: scaffold gap size wrong estimation (local) 6622116 6659840 917370 879154 CM091756.1 scaffold142 99.04 True fake: scaffold gap size wrong estimation (local) 6621096 6621988 918572 917679 CM091756.1 scaffold142 99.55 True fake: scaffold gap size wrong estimation (local) 6534641 6620173 1007113 919745 CM091756.1 scaffold142 98.2 True fake: scaffold gap size wrong estimation (local) 6510753 6534529 1031781 1008007 CM091756.1 scaffold142 99.66 True local misassembly 6451773 6510075 1093263 1032399 CM091756.1 scaffold142 97.5 True indel: indel (> 5bp) 6396541 6451706 1149506 1093340 CM091756.1 scaffold142 97.71 True indel: indel (<= 5bp) 6371869 6396508 1174227 1149540 CM091756.1 scaffold142 99.45 True indel: indel (<= 5bp) 6324417 6371789 1222248 1174303 CM091756.1 scaffold142 99.46 True local misassembly 6317958 6325262 1229527 1222249 CM091756.1 scaffold142 98.43 True fake: not a misassembly (possible transposable element) 6317836 6319193 1229528 1230869 CM091756.1 scaffold142 96.38 True fake: not a misassembly (possible transposable element) 6307820 6317747 1240848 1230912 CM091756.1 scaffold142 99.56 True local misassembly 6250206 6307113 1298211 1241695 CM091756.1 scaffold142 97.37 True local misassembly 6223869 6247936 1330526 1305952 CM091756.1 scaffold142 97.15 True indel: indel (> 5bp) 6168872 6223772 1385905 1330555 CM091756.1 scaffold142 98.26 True local misassembly 6121326 6168779 1433874 1386164 CM091756.1 scaffold142 98.73 True indel: indel (> 5bp) 6071124 6121282 1485251 1433936 CM091756.1 scaffold142 98.63 True local misassembly 5917135 6071625 1640651 1485268 CM091756.1 scaffold142 98.84 True local misassembly 5812025 5917081 1747822 1641084 CM091756.1 scaffold142 99.3 True CONTIG scaffold142 1747843 correct 3239339 3247250 1 7943 CM091752.1 scaffold165 99.06 True indel: indel (> 5bp) 3247387 3269917 8089 30451 CM091752.1 scaffold165 97.0 True fake: scaffold gap size wrong estimation (local) 3273175 3274067 37489 38398 CM091752.1 scaffold165 98.22 True CONTIG scaffold165 39377 correct CONTIG scaffold168 360 unaligned 8969586 8984044 14496 1 CM091767.1 scaffold167 99.54 True indel: indel (<= 5bp) 8967207 8969547 16878 14538 CM091767.1 scaffold167 99.96 True CONTIG scaffold167 16878 correct 303368 326160 24738 1980 CM091761.1 scaffold166 99.69 True fake: scaffold gap size wrong estimation (local) 289494 302521 40283 25942 CM091761.1 scaffold166 99.31 True fake: scaffold gap size wrong estimation (local) 285054 289762 45650 40983 CM091761.1 scaffold166 99.04 True local misassembly 282814 286347 49184 45651 CM091761.1 scaffold166 99.92 True fake: scaffold gap size wrong estimation (local) 280716 282813 51326 49229 CM091761.1 scaffold166 99.86 True local misassembly 270132 280496 62494 52130 CM091761.1 scaffold166 99.97 True indel: indel (<= 5bp) 266920 270131 65710 62499 CM091761.1 scaffold166 99.91 True local misassembly 259667 261236 67996 66427 CM091761.1 scaffold166 100.0 True indel: indel (<= 5bp) 256096 259665 71566 67997 CM091761.1 scaffold166 100.0 True indel: indel (> 5bp) 254019 255720 73611 71910 CM091761.1 scaffold166 99.88 True indel: indel (<= 5bp) 251293 254017 76336 73612 CM091761.1 scaffold166 99.96 True indel: indel (<= 5bp) 250130 251292 77500 76338 CM091761.1 scaffold166 100.0 True fake: scaffold gap size wrong estimation (local) 248329 250129 79707 77907 CM091761.1 scaffold166 99.72 True fake: scaffold gap size wrong estimation (local) 246325 248328 81916 79913 CM091761.1 scaffold166 99.95 True indel: indel (<= 5bp) 243639 245841 84607 82405 CM091761.1 scaffold166 100.0 True indel: indel (> 5bp) 242772 243638 85544 84678 CM091761.1 scaffold166 100.0 True indel: indel (<= 5bp) 241652 242771 86665 85546 CM091761.1 scaffold166 99.91 True indel: indel (<= 5bp) 240805 241563 87515 86755 CM091761.1 scaffold166 98.82 True fake: scaffold gap size wrong estimation (local) 200946 240712 132137 87617 CM091761.1 scaffold166 97.56 True indel: indel (<= 5bp) 185596 200727 147501 132359 CM091761.1 scaffold166 99.82 True indel: indel (> 5bp) 177917 185380 156041 147752 CM091761.1 scaffold166 99.77 True indel: indel (> 5bp) 172890 177794 161137 156221 CM091761.1 scaffold166 99.49 True indel: indel (> 5bp) 164131 172866 169956 161196 CM091761.1 scaffold166 98.99 True CONTIG scaffold166 169956 correct CONTIG scaffold171 384 unaligned 8599189 8600761 1580 1 CM091767.1 scaffold172 99.37 True CONTIG scaffold172 1580 correct 4474435 4474992 3849 3292 CM091754.1 scaffold173 97.13 True CONTIG scaffold173 5947 correct_unaligned 17519750 17524876 5189 1 CM091751.1 scaffold170 99.49 True fake: scaffold gap size wrong estimation (local) 17515884 17519579 9740 6045 CM091751.1 scaffold170 99.95 True indel: indel (> 5bp) 17514278 17515717 11429 9968 CM091751.1 scaffold170 97.74 True fake: scaffold gap size wrong estimation (local) 17513752 17514498 13950 13203 CM091751.1 scaffold170 99.87 True fake: scaffold gap size wrong estimation (local) 17504061 17512485 25032 16597 CM091751.1 scaffold170 99.5 True fake: scaffold gap size wrong estimation (local) 17480726 17503558 48894 26062 CM091751.1 scaffold170 99.96 True fake: scaffold gap size wrong estimation (local) 17429263 17480515 100516 49116 CM091751.1 scaffold170 99.59 True fake: scaffold gap size wrong estimation (local) 17419808 17428548 110650 101908 CM091751.1 scaffold170 99.87 True fake: scaffold gap size wrong estimation (local) 17410911 17418355 119559 112115 CM091751.1 scaffold170 99.96 True indel: indel (> 5bp) 17408377 17410883 122105 119597 CM091751.1 scaffold170 99.01 True fake: scaffold gap size wrong estimation (local) 17397802 17407571 133274 123400 CM091751.1 scaffold170 98.31 True fake: scaffold gap size wrong estimation (local) 17394909 17397588 136707 134012 CM091751.1 scaffold170 99.41 True fake: scaffold gap size wrong estimation (local) 17391177 17394730 140858 137274 CM091751.1 scaffold170 98.69 True local misassembly 17387732 17391017 144448 141198 CM091751.1 scaffold170 98.93 True fake: scaffold gap size wrong estimation (local) 17386968 17387512 145843 145299 CM091751.1 scaffold170 99.82 True CONTIG scaffold170 146820 correct CONTIG scaffold175 436 unaligned 4903799 4904671 873 1 CM091768.1 scaffold174 99.54 True local misassembly 4897178 4903692 8757 2243 CM091768.1 scaffold174 99.86 True indel: indel (> 5bp) 4895517 4897177 10434 8774 CM091768.1 scaffold174 100.0 True indel: indel (> 5bp) 4892011 4895511 13953 10453 CM091768.1 scaffold174 100.0 True indel: indel (<= 5bp) 4872088 4891920 33941 14048 CM091768.1 scaffold174 99.89 True fake: scaffold gap size wrong estimation (local) 4850300 4871854 55783 34229 CM091768.1 scaffold174 100.0 True local misassembly 4847041 4850264 59143 55944 CM091768.1 scaffold174 98.39 True fake: scaffold gap size wrong estimation (local) 4836885 4847018 70603 60469 CM091768.1 scaffold174 99.99 True fake: scaffold gap size wrong estimation (local) 4826907 4837402 82757 71534 CM091768.1 scaffold174 99.61 True CONTIG scaffold174 82757 correct 3407341 3407952 638 1 CM091768.1 scaffold177 95.61 True CONTIG scaffold177 638 correct 6329805 6373938 9 44248 CM091764.1 scaffold160 99.49 True fake: not a misassembly (possible transposable element) 4939060 4939942 45144 44260 CM091766.1 scaffold160 99.44 True fake: not a misassembly (possible transposable element) 6374008 6462230 45145 135822 CM091764.1 scaffold160 98.83 True indel: indel (<= 5bp) 6462334 6469668 135927 143320 CM091764.1 scaffold160 98.81 True indel: indel (> 5bp) 6469707 6496052 143372 170252 CM091764.1 scaffold160 99.23 True indel: indel (> 5bp) 6496207 6578286 170416 252955 CM091764.1 scaffold160 99.44 True indel: indel (> 5bp) 6578381 6594095 253068 268765 CM091764.1 scaffold160 99.23 True fake: not a misassembly (possible transposable element) 6593189 6594095 270045 269132 CM091764.1 scaffold160 98.91 True fake: not a misassembly (possible transposable element) 6594177 6678136 270057 357345 CM091764.1 scaffold160 99.08 True local misassembly 6678241 6923155 357360 608579 CM091764.1 scaffold160 98.97 True fake: scaffold gap size wrong estimation (local) 6923886 6958219 610444 644798 CM091764.1 scaffold160 99.55 True fake: scaffold gap size wrong estimation (local) 6958309 7434327 644929 1125171 CM091764.1 scaffold160 99.28 True local misassembly 7433879 7434523 1125940 1126583 CM091764.1 scaffold160 99.29 True local misassembly 7439290 7440817 1126584 1128121 CM091764.1 scaffold160 95.59 True local misassembly 7435348 7438652 1128462 1131761 CM091764.1 scaffold160 98.61 True local misassembly 7437754 7464836 1131763 1158914 CM091764.1 scaffold160 99.26 True local misassembly 7464367 7464929 1159354 1159917 CM091764.1 scaffold160 99.29 True CONTIG scaffold160 1159917 correct 340850 349532 1 8687 CM091761.1 scaffold163 99.77 True fake: scaffold gap size wrong estimation (local) 349805 411546 9244 71924 CM091761.1 scaffold163 99.07 True fake: scaffold gap size wrong estimation (local) 411657 436103 72053 96533 CM091761.1 scaffold163 99.71 True fake: scaffold gap size wrong estimation (local) 436304 439233 97503 100432 CM091761.1 scaffold163 97.61 True local misassembly 439234 439783 100709 101258 CM091761.1 scaffold163 98.36 True local misassembly 440029 441476 101847 103294 CM091761.1 scaffold163 99.93 True indel: indel (<= 5bp) 441606 442818 103422 104634 CM091761.1 scaffold163 100.0 True indel: indel (<= 5bp) 442819 444792 104637 106610 CM091761.1 scaffold163 99.9 True indel: indel (<= 5bp) 444973 446603 106790 108420 CM091761.1 scaffold163 100.0 True local misassembly 447120 454646 109289 116816 CM091761.1 scaffold163 99.89 True fake: scaffold gap size wrong estimation (local) 455014 587792 117402 251109 CM091761.1 scaffold163 99.53 True local misassembly 588575 610658 252193 274268 CM091761.1 scaffold163 99.89 True local misassembly 610681 623430 274711 287898 CM091761.1 scaffold163 96.64 True local misassembly 622793 748984 287902 417640 CM091761.1 scaffold163 98.56 True local misassembly 749103 786404 417878 455427 CM091761.1 scaffold163 99.29 True CONTIG scaffold163 455427 correct CONTIG scaffold180 416 unaligned 6387326 6391884 1 4557 CM091760.1 scaffold181 99.76 True CONTIG scaffold181 4557 correct CONTIG scaffold182 324 unaligned 15463518 15531523 1 68093 CM091758.1 scaffold159 99.6 True indel: indel (> 5bp) 15531565 15609795 68144 146921 CM091758.1 scaffold159 97.57 True fake: scaffold gap size wrong estimation (local) 15608686 15653226 147485 194495 CM091758.1 scaffold159 97.92 True fake: scaffold gap size wrong estimation (local) 15653318 15712491 194694 255177 CM091758.1 scaffold159 98.88 True fake: scaffold gap size wrong estimation (local) 15712832 15807900 255548 354411 CM091758.1 scaffold159 98.38 True local misassembly 15807926 15854295 354903 402565 CM091758.1 scaffold159 99.55 True local misassembly 15855056 15864805 402884 412914 CM091758.1 scaffold159 96.8 True CONTIG scaffold159 412914 correct 6321697 6323001 1 1296 CM091768.1 scaffold184 97.78 True fake: scaffold gap size wrong estimation (local) 6324072 6329770 2648 8541 CM091768.1 scaffold184 96.27 True CONTIG scaffold184 8541 correct CONTIG scaffold185 317 unaligned 19551665 19552900 1 1236 CM091751.1 scaffold183 98.95 True local misassembly 19553583 19582467 2337 31144 CM091751.1 scaffold183 96.51 True fake: scaffold gap size wrong estimation (local) 19582908 19585466 31976 34513 CM091751.1 scaffold183 98.52 True local misassembly 19585887 19589123 34827 38051 CM091751.1 scaffold183 97.73 True local misassembly 19589154 19589800 38415 39061 CM091751.1 scaffold183 96.91 True indel: indel (> 5bp) 19590168 19591612 39346 40790 CM091751.1 scaffold183 99.52 True indel: indel (<= 5bp) 19591614 19592838 40791 42015 CM091751.1 scaffold183 98.37 True local misassembly 19593948 19594735 43126 43913 CM091751.1 scaffold183 98.98 True indel: indel (> 5bp) 19594872 19595839 44043 45010 CM091751.1 scaffold183 98.86 True local misassembly 19597756 19598423 46930 47597 CM091751.1 scaffold183 99.55 True local misassembly 19599796 19600434 48108 48746 CM091751.1 scaffold183 99.37 True indel: indel (<= 5bp) 19600436 19602067 48747 50378 CM091751.1 scaffold183 99.08 True indel: indel (<= 5bp) 19602068 19602670 50380 50982 CM091751.1 scaffold183 99.17 True indel: indel (> 5bp) 19602774 19603458 51068 51752 CM091751.1 scaffold183 99.42 True local misassembly 19605609 19606182 53929 54502 CM091751.1 scaffold183 99.13 True local misassembly 19607313 19610406 55612 58705 CM091751.1 scaffold183 99.58 True indel: indel (> 5bp) 19610760 19611644 59084 59968 CM091751.1 scaffold183 99.77 True indel: indel (<= 5bp) 19611645 19612425 59970 60750 CM091751.1 scaffold183 99.49 True indel: stretch of mismatches 19612661 19614530 60986 62855 CM091751.1 scaffold183 98.77 True indel: indel (<= 5bp) 19614879 19615451 63206 63778 CM091751.1 scaffold183 100.0 True local misassembly 19616120 19617603 64297 65788 CM091751.1 scaffold183 98.39 True relocation, inconsistency = 84910 19704911 19707568 70890 68186 CM091751.1 scaffold183 97.6 True local misassembly 19703189 19703859 72629 71959 CM091751.1 scaffold183 99.11 True indel: indel (<= 5bp) 19702464 19703187 73353 72630 CM091751.1 scaffold183 99.86 True local misassembly 19699248 19701747 76574 74075 CM091751.1 scaffold183 99.72 True local misassembly 19695462 19696858 78747 77351 CM091751.1 scaffold183 99.79 True local misassembly 19693336 19694761 80866 79441 CM091751.1 scaffold183 98.46 True indel: indel (<= 5bp) 19684442 19693258 89777 80947 CM091751.1 scaffold183 99.18 True relocation, inconsistency = 14443 19707702 19779359 89778 161041 CM091751.1 scaffold183 98.87 True fake: not a misassembly (possible transposable element) 17303096 17303675 161042 161621 CM091751.1 scaffold183 100.0 True fake: not a misassembly (possible transposable element) 19779390 19796732 161622 178916 CM091751.1 scaffold183 98.09 True indel: indel (> 5bp) 19796820 19798980 178994 181159 CM091751.1 scaffold183 98.66 True indel: indel (> 5bp) 19799048 19800035 181253 182240 CM091751.1 scaffold183 99.39 True indel: indel (<= 5bp) 19800038 19800901 182241 183104 CM091751.1 scaffold183 99.88 True indel: indel (<= 5bp) 19800902 19801901 183106 184105 CM091751.1 scaffold183 100.0 True local misassembly 19802773 19811550 185648 194483 CM091751.1 scaffold183 97.92 True local misassembly 19811634 19816583 195115 200071 CM091751.1 scaffold183 98.37 True local misassembly 19816631 19856595 200544 240514 CM091751.1 scaffold183 96.44 True fake: scaffold gap size wrong estimation (local) 19856943 19857856 240986 241899 CM091751.1 scaffold183 99.23 True indel: indel (<= 5bp) 19857857 19858443 241902 242488 CM091751.1 scaffold183 97.96 True local misassembly 19859803 19861894 243873 245964 CM091751.1 scaffold183 99.24 True fake: not a misassembly (possible transposable element) 19862044 19862669 246630 246005 CM091751.1 scaffold183 99.05 True fake: not a misassembly (possible transposable element) 19863305 19919964 246631 303727 CM091751.1 scaffold183 96.09 True indel: indel (> 5bp) 19920134 19926313 303912 310180 CM091751.1 scaffold183 96.73 True indel: indel (> 5bp) 19926493 19934250 310317 317999 CM091751.1 scaffold183 98.18 True indel: indel (> 5bp) 19934416 19938713 318187 322527 CM091751.1 scaffold183 97.09 True indel: indel (> 5bp) 19938767 19940530 322535 324336 CM091751.1 scaffold183 96.95 True CONTIG scaffold183 324405 misassembled 400644 402416 1 1837 CM091764.1 scaffold187 95.76 True fake: scaffold gap size wrong estimation (local) 401710 421815 2579 22537 CM091764.1 scaffold187 99.67 True local misassembly 421918 435039 22731 35854 CM091764.1 scaffold187 99.89 True translocation 7341923 7342793 35891 36761 CM091759.1 scaffold187 99.79 True translocation 443777 448623 36762 41643 CM091764.1 scaffold187 99.73 True fake: scaffold gap size wrong estimation (local) 448727 449259 41791 42333 CM091764.1 scaffold187 98.16 True fake: scaffold gap size wrong estimation (local) 449426 451562 42534 44736 CM091764.1 scaffold187 96.73 True local misassembly 451918 468017 45308 61420 CM091764.1 scaffold187 99.71 True local misassembly 467516 491050 61421 85040 CM091764.1 scaffold187 99.64 True CONTIG scaffold187 85040 misassembled 9305866 9306696 831 1 CM091767.1 scaffold188 99.76 True fake: scaffold gap size wrong estimation (local) 9304259 9304951 2445 1753 CM091767.1 scaffold188 100.0 True local misassembly 9301796 9303340 5193 3649 CM091767.1 scaffold188 99.22 True indel: indel (> 5bp) 9301142 9301795 5879 5226 CM091767.1 scaffold188 99.85 True fake: scaffold gap size wrong estimation (local) 9299127 9300058 7842 6911 CM091767.1 scaffold188 99.89 True CONTIG scaffold188 7842 correct 14973 18645 3698 18 CM091764.1 scaffold189 99.73 True fake: scaffold gap size wrong estimation (local) 6902 13735 11616 4681 CM091764.1 scaffold189 98.39 True fake: scaffold gap size wrong estimation (local) 3579 6145 15411 12807 CM091764.1 scaffold189 98.65 True CONTIG scaffold189 15411 correct CONTIG scaffold190 567 unaligned CONTIG scaffold191 619 unaligned 15511002 15514482 3484 1 CM091757.1 scaffold192 97.03 True translocation 4041093 4045852 3485 8388 CM091752.1 scaffold192 96.76 True fake: scaffold gap size wrong estimation (local) 4046007 4049987 9247 13262 CM091752.1 scaffold192 98.26 True CONTIG scaffold192 13262 misassembled 12619030 12627030 8213 1 CM091759.1 scaffold193 96.88 True local misassembly 12613588 12615867 14971 12687 CM091759.1 scaffold193 97.69 True fake: scaffold gap size wrong estimation (local) 12607271 12613088 21297 15491 CM091759.1 scaffold193 98.56 True local misassembly 12603930 12605793 26275 24435 CM091759.1 scaffold193 96.95 True local misassembly 12530100 12598622 100507 30925 CM091759.1 scaffold193 97.99 True local misassembly 12527598 12529758 103773 101615 CM091759.1 scaffold193 99.44 True indel: indel (> 5bp) 12516716 12527403 114603 103924 CM091759.1 scaffold193 99.28 True local misassembly 12513625 12516128 117110 114604 CM091759.1 scaffold193 99.24 True local misassembly 12510031 12514226 121362 117144 CM091759.1 scaffold193 99.01 True local misassembly 12494600 12509746 136720 121514 CM091759.1 scaffold193 98.91 True CONTIG scaffold193 136720 correct 3822276 3837123 15193 120 CM091752.1 scaffold179 96.6 True local misassembly 3786448 3822443 51493 15475 CM091752.1 scaffold179 99.25 True CONTIG scaffold179 51493 correct 8197231 8201340 1 4103 CM091767.1 scaffold194 98.93 True indel: indel (> 5bp) 8201484 8219529 4239 22873 CM091767.1 scaffold194 97.97 True fake: scaffold gap size wrong estimation (local) 8220039 8222622 23861 26462 CM091767.1 scaffold194 99.12 True fake: scaffold gap size wrong estimation (local) 8223875 8225383 27855 29372 CM091767.1 scaffold194 98.62 True fake: scaffold gap size wrong estimation (local) 8225992 8232910 30222 37169 CM091767.1 scaffold194 98.94 True fake: scaffold gap size wrong estimation (local) 8233001 8235616 37377 39976 CM091767.1 scaffold194 99.04 True fake: scaffold gap size wrong estimation (local) 8236446 8237010 41449 42013 CM091767.1 scaffold194 99.47 True indel: indel (> 5bp) 8237082 8237624 42102 42644 CM091767.1 scaffold194 99.26 True indel: indel (> 5bp) 8237625 8238155 42682 43212 CM091767.1 scaffold194 100.0 True local misassembly 8238279 8239771 43548 45039 CM091767.1 scaffold194 99.93 True CONTIG scaffold194 45039 correct 3356648 3357870 1 1223 CM091768.1 scaffold196 99.92 True CONTIG scaffold196 1223 correct CONTIG scaffold195 3973 unaligned 15279714 15280461 748 1 CM091752.1 scaffold198 97.99 True CONTIG scaffold198 748 correct CONTIG scaffold197 870 unaligned CONTIG scaffold200 833 unaligned 5625446 5626800 1 1355 CM091768.1 scaffold201 99.93 True CONTIG scaffold201 1355 correct 320230 320750 2 522 CM091764.1 scaffold199 99.04 True relocation, inconsistency = 9645 302581 310584 8421 523 CM091764.1 scaffold199 98.13 True fake: scaffold gap size wrong estimation (local) 285511 302222 25587 9009 CM091764.1 scaffold199 99.01 True fake: scaffold gap size wrong estimation (local) 259058 285271 52380 25884 CM091764.1 scaffold199 99.71 True local misassembly 244954 258460 66642 53133 CM091764.1 scaffold199 99.91 True local misassembly 226205 245688 86069 66655 CM091764.1 scaffold199 99.52 True CONTIG scaffold199 86069 misassembled 18512640 18513766 4140 3014 CM091751.1 scaffold186 99.82 True fake: scaffold gap size wrong estimation (local) 18472086 18513182 45591 4609 CM091751.1 scaffold186 98.64 True local misassembly 18468878 18471440 49867 47305 CM091751.1 scaffold186 99.3 True indel: indel (<= 5bp) 18467463 18468876 51281 49868 CM091751.1 scaffold186 99.43 True indel: indel (<= 5bp) 18466714 18467462 52034 51286 CM091751.1 scaffold186 98.93 True local misassembly 18441193 18466108 77698 52619 CM091751.1 scaffold186 97.91 True indel: indel (> 5bp) 18435506 18441146 83329 77701 CM091751.1 scaffold186 98.11 True indel: indel (> 5bp) 18429336 18435361 89493 83455 CM091751.1 scaffold186 98.98 True fake: scaffold gap size wrong estimation (local) 18345381 18429220 173416 89634 CM091751.1 scaffold186 98.6 True indel: indel (> 5bp) 18302892 18345243 215912 173572 CM091751.1 scaffold186 99.18 True indel: indel (> 5bp) 18300389 18302781 218432 216037 CM091751.1 scaffold186 99.33 True local misassembly 18242845 18299791 276397 219064 CM091751.1 scaffold186 98.48 True local misassembly 18176181 18242402 344150 276706 CM091751.1 scaffold186 98.2 True local misassembly 18109220 18176112 411229 344350 CM091751.1 scaffold186 98.69 True indel: indel (> 5bp) 18074687 18109048 446013 411418 CM091751.1 scaffold186 98.46 True indel: indel (> 5bp) 18062605 18074638 459498 446014 CM091751.1 scaffold186 95.7 True fake: scaffold gap size wrong estimation (local) 17892870 18062510 631701 460281 CM091751.1 scaffold186 98.8 True indel: indel (> 5bp) 17878668 17892822 645868 631768 CM091751.1 scaffold186 98.22 True indel: indel (> 5bp) 17831258 17878602 694633 645963 CM091751.1 scaffold186 98.77 True CONTIG scaffold186 694693 correct 101703 102895 1 1193 CM091753.1 scaffold202 99.83 True local misassembly 103106 105175 1775 3844 CM091753.1 scaffold202 99.95 True indel: indel (> 5bp) 105319 137355 3996 36450 CM091753.1 scaffold202 99.78 True fake: scaffold gap size wrong estimation (local) 137901 156820 37814 56780 CM091753.1 scaffold202 99.31 True CONTIG scaffold202 58297 correct 8795196 8797443 2322 1 CM091767.1 scaffold205 97.03 True CONTIG scaffold205 2322 correct 395034 395606 566 1 CM091764.1 scaffold206 97.56 True indel: indel (> 5bp) 391292 395029 4348 611 CM091764.1 scaffold206 99.84 True fake: scaffold gap size wrong estimation (local) 381215 391051 14454 4618 CM091764.1 scaffold206 99.9 True relocation, scaffold gap is present, inconsistency = 11948 362901 368372 20827 15349 CM091764.1 scaffold206 99.78 True local misassembly 363042 363860 21646 20828 CM091764.1 scaffold206 99.76 True indel: indel (<= 5bp) 362414 363041 22279 21652 CM091764.1 scaffold206 100.0 True local misassembly 360757 362390 24437 22804 CM091764.1 scaffold206 99.76 True CONTIG scaffold206 24437 misassembled CONTIG scaffold203 3774 unaligned 7851434 7865111 13675 1 CM091767.1 scaffold207 99.84 True local misassembly 7845738 7852562 20622 13676 CM091767.1 scaffold207 98.42 True fake: scaffold gap size wrong estimation (local) 7839792 7845461 27073 21404 CM091767.1 scaffold207 99.95 True CONTIG scaffold207 27073 correct 13101035 13157247 58335 1 CM091751.1 scaffold121 97.86 True fake: scaffold gap size wrong estimation (local) 12978947 13100885 180480 58512 CM091751.1 scaffold121 98.28 True local misassembly 12844306 12978213 317994 181282 CM091751.1 scaffold121 98.67 True fake: scaffold gap size wrong estimation (local) 12815024 12844212 349386 318275 CM091751.1 scaffold121 96.02 True fake: scaffold gap size wrong estimation (local) 12798291 12814835 368631 352101 CM091751.1 scaffold121 99.38 True fake: scaffold gap size wrong estimation (local) 12757086 12797831 410248 369507 CM091751.1 scaffold121 99.8 True local misassembly 12741126 12757650 426766 410249 CM091751.1 scaffold121 99.29 True fake: scaffold gap size wrong estimation (local) 12724856 12741032 444391 427307 CM091751.1 scaffold121 99.26 True fake: scaffold gap size wrong estimation (local) 12719189 12724702 451099 445324 CM091751.1 scaffold121 99.38 True fake: scaffold gap size wrong estimation (local) 12681137 12719107 492941 451195 CM091751.1 scaffold121 98.21 True fake: scaffold gap size wrong estimation (local) 12665016 12680959 510095 493771 CM091751.1 scaffold121 99.14 True fake: scaffold gap size wrong estimation (local) 12656671 12664517 519774 511897 CM091751.1 scaffold121 99.15 True fake: scaffold gap size wrong estimation (local) 12651826 12656403 525821 520710 CM091751.1 scaffold121 99.65 True indel: indel (<= 5bp) 12628108 12651532 549491 526111 CM091751.1 scaffold121 99.4 True fake: scaffold gap size wrong estimation (local) 12253599 12627909 930084 550233 CM091751.1 scaffold121 99.0 True indel: indel (<= 5bp) 12102441 12253532 1085744 930154 CM091751.1 scaffold121 99.32 True indel: indel (> 5bp) 12048804 12102404 1141150 1085831 CM091751.1 scaffold121 99.52 True indel: indel (> 5bp) 12045351 12048772 1144602 1141176 CM091751.1 scaffold121 99.59 True fake: scaffold gap size wrong estimation (local) 12033886 12045265 1157311 1145181 CM091751.1 scaffold121 99.14 True indel: indel (<= 5bp) 12031471 12033786 1159723 1157410 CM091751.1 scaffold121 99.48 True fake: scaffold gap size wrong estimation (local) 12030546 12031250 1161220 1160516 CM091751.1 scaffold121 100.0 True fake: scaffold gap size wrong estimation (local) 11991843 12030433 1203440 1161909 CM091751.1 scaffold121 98.05 True local misassembly 11927280 11991803 1269779 1203687 CM091751.1 scaffold121 98.56 True local misassembly 11892451 11926581 1305007 1270532 CM091751.1 scaffold121 99.28 True fake: scaffold gap size wrong estimation (local) 11701103 11892265 1500748 1306170 CM091751.1 scaffold121 98.59 True fake: scaffold gap size wrong estimation (local) 11701009 11702044 1502012 1500945 CM091751.1 scaffold121 96.91 True indel: indel (> 5bp) 11661148 11700874 1541941 1502196 CM091751.1 scaffold121 99.89 True local misassembly 11648778 11661878 1555036 1541942 CM091751.1 scaffold121 99.83 True local misassembly 11593977 11648689 1611017 1555663 CM091751.1 scaffold121 99.48 True fake: scaffold gap size wrong estimation (local) 11563927 11593750 1642525 1612071 CM091751.1 scaffold121 99.31 True indel: indel (> 5bp) 11554385 11563855 1652549 1642572 CM091751.1 scaffold121 99.38 True indel: indel (> 5bp) 11426862 11554327 1782155 1652636 CM091751.1 scaffold121 98.61 True indel: indel (> 5bp) 11008813 11426840 2210317 1782193 CM091751.1 scaffold121 98.9 True indel: indel (> 5bp) 10898007 11008748 2326098 2210428 CM091751.1 scaffold121 98.8 True indel: indel (> 5bp) 10798556 10897966 2429139 2326153 CM091751.1 scaffold121 98.8 True local misassembly 10599105 10798512 2636156 2429652 CM091751.1 scaffold121 99.2 True indel: indel (> 5bp) 10518121 10599062 2718126 2636209 CM091751.1 scaffold121 99.51 True fake: scaffold gap size wrong estimation (local) 10327458 10517941 2909599 2718394 CM091751.1 scaffold121 99.35 True CONTIG scaffold121 2909603 correct 19194638 19200217 8296 2745 CM091751.1 scaffold209 98.35 True indel: indel (> 5bp) 19193952 19194597 8967 8322 CM091751.1 scaffold209 99.54 True local misassembly 19191473 19192691 11451 10233 CM091751.1 scaffold209 99.34 True indel: stretch of mismatches 19189908 19191039 13016 11885 CM091751.1 scaffold209 99.29 True indel: indel (<= 5bp) 19187925 19189475 14995 13445 CM091751.1 scaffold209 99.03 True indel: indel (<= 5bp) 19186349 19187924 16573 14998 CM091751.1 scaffold209 98.92 True fake: scaffold gap size wrong estimation (local) 19183348 19185541 20040 17847 CM091751.1 scaffold209 99.0 True local misassembly 19181604 19182168 22603 22039 CM091751.1 scaffold209 99.47 True fake: scaffold gap size wrong estimation (local) 19172039 19179749 32810 25089 CM091751.1 scaffold209 97.62 True fake: scaffold gap size wrong estimation (local) 19168617 19169832 38380 37165 CM091751.1 scaffold209 98.93 True local misassembly 19166353 19168420 40788 38721 CM091751.1 scaffold209 99.42 True indel: indel (> 5bp) 19164664 19165917 42469 41216 CM091751.1 scaffold209 99.36 True local misassembly 19162233 19163654 45028 43607 CM091751.1 scaffold209 99.09 True local misassembly 19160737 19162080 46968 45625 CM091751.1 scaffold209 99.7 True local misassembly 19108738 19159378 99048 48348 CM091751.1 scaffold209 97.62 True indel: indel (> 5bp) 19086728 19108642 121813 99191 CM091751.1 scaffold209 96.09 True indel: indel (<= 5bp) 19074936 19086656 133631 121884 CM091751.1 scaffold209 96.93 True indel: indel (> 5bp) 19041058 19074701 167823 133816 CM091751.1 scaffold209 97.02 True CONTIG scaffold209 167823 correct CONTIG scaffold211 749 unaligned 1050043 1065147 15640 1 CM091754.1 scaffold208 95.66 True indel: stretch of mismatches 1021322 1049924 44168 15759 CM091754.1 scaffold208 98.9 True local misassembly 1009791 1020917 55489 44334 CM091754.1 scaffold208 96.43 True local misassembly 998004 1009228 67713 56463 CM091754.1 scaffold208 98.19 True local misassembly 987865 997269 78143 68641 CM091754.1 scaffold208 97.97 True local misassembly 986951 987840 79265 78376 CM091754.1 scaffold208 98.88 True indel: indel (> 5bp) 986204 986827 79970 79347 CM091754.1 scaffold208 99.84 True indel: indel (<= 5bp) 984399 986024 81770 80145 CM091754.1 scaffold208 99.45 True indel: indel (<= 5bp) 983579 984093 82593 82079 CM091754.1 scaffold208 98.83 True local misassembly 980596 981936 84876 83536 CM091754.1 scaffold208 99.55 True local misassembly 978455 979703 87012 85764 CM091754.1 scaffold208 99.28 True local misassembly 976514 977743 89151 87922 CM091754.1 scaffold208 99.59 True indel: indel (<= 5bp) 975757 976506 89912 89163 CM091754.1 scaffold208 100.0 True local misassembly 969332 974081 96461 91666 CM091754.1 scaffold208 98.29 True fake: scaffold gap size wrong estimation (local) 918267 968841 148297 96738 CM091754.1 scaffold208 96.11 True indel: indel (> 5bp) 916657 918200 149941 148400 CM091754.1 scaffold208 99.03 True local misassembly 846772 916205 220128 150546 CM091754.1 scaffold208 95.86 True indel: indel (> 5bp) 801234 846576 265778 220318 CM091754.1 scaffold208 98.85 True indel: indel (> 5bp) 798833 801039 268190 265984 CM091754.1 scaffold208 99.73 True local misassembly 795721 798308 271306 268719 CM091754.1 scaffold208 99.11 True local misassembly 793994 794740 273007 272261 CM091754.1 scaffold208 99.6 True indel: indel (<= 5bp) 793107 793720 273892 273279 CM091754.1 scaffold208 99.51 True indel: indel (> 5bp) 791714 792872 275293 274135 CM091754.1 scaffold208 98.96 True local misassembly 789602 790591 277272 276283 CM091754.1 scaffold208 99.39 True local misassembly 788113 788684 278241 277670 CM091754.1 scaffold208 99.83 True indel: indel (<= 5bp) 786533 787672 279824 278685 CM091754.1 scaffold208 99.65 True local misassembly 783880 784983 281173 280070 CM091754.1 scaffold208 99.82 True local misassembly 781778 782717 283258 282319 CM091754.1 scaffold208 99.04 True local misassembly 779948 780640 285093 284401 CM091754.1 scaffold208 99.42 True indel: indel (<= 5bp) 778927 779661 286116 285382 CM091754.1 scaffold208 99.73 True local misassembly 771878 779484 294577 286670 CM091754.1 scaffold208 95.13 True CONTIG scaffold208 294612 correct CONTIG scaffold213 398 unaligned 15561619 15565213 1 3628 CM091757.1 scaffold214 99.09 True CONTIG scaffold214 3628 correct 10577566 10662988 88758 1 CM091755.1 scaffold169 98.0 True indel: indel (> 5bp) 10567616 10577453 99368 88808 CM091755.1 scaffold169 99.37 True indel: indel (<= 5bp) 10560631 10567483 106484 99503 CM091755.1 scaffold169 98.28 True indel: indel (> 5bp) 10555977 10560477 111135 106632 CM091755.1 scaffold169 99.05 True local misassembly 10470740 10556709 197957 111181 CM091755.1 scaffold169 99.59 True indel: indel (> 5bp) 10434826 10470676 233738 198046 CM091755.1 scaffold169 98.97 True fake: scaffold gap size wrong estimation (local) 10433539 10434112 236064 235491 CM091755.1 scaffold169 99.65 True local misassembly 10432929 10433513 236760 236176 CM091755.1 scaffold169 100.0 True local misassembly 10428975 10432035 241063 238003 CM091755.1 scaffold169 99.67 True indel: indel (> 5bp) 10426770 10428767 243241 241244 CM091755.1 scaffold169 99.4 True fake: scaffold gap size wrong estimation (local) 10331678 10426499 340104 244207 CM091755.1 scaffold169 99.02 True indel: indel (> 5bp) 10231017 10331640 440877 340132 CM091755.1 scaffold169 98.51 True local misassembly 10118850 10230836 555009 441834 CM091755.1 scaffold169 97.6 True fake: scaffold gap size wrong estimation (local) 10105893 10119089 568466 555309 CM091755.1 scaffold169 98.1 True indel: indel (> 5bp) 10096240 10105615 578101 568722 CM091755.1 scaffold169 98.75 True indel: indel (> 5bp) 10038670 10096092 636118 578236 CM091755.1 scaffold169 98.66 True fake: scaffold gap size wrong estimation (local) 10010836 10038558 665030 636831 CM091755.1 scaffold169 97.31 True indel: indel (> 5bp) 9984064 10010700 692224 665109 CM091755.1 scaffold169 97.07 True indel: indel (> 5bp) 9971797 9983972 704991 692328 CM091755.1 scaffold169 95.33 True indel: indel (> 5bp) 9970633 9971451 706235 705417 CM091755.1 scaffold169 99.51 True local misassembly 9960075 9969725 716459 706768 CM091755.1 scaffold169 98.57 True indel: stretch of mismatches 9878649 9960030 798218 716504 CM091755.1 scaffold169 99.38 True local misassembly 9871886 9879310 805655 798219 CM091755.1 scaffold169 99.1 True local misassembly 9870817 9872591 807433 805656 CM091755.1 scaffold169 99.38 True indel: indel (<= 5bp) 9798741 9870758 881087 807496 CM091755.1 scaffold169 97.88 True indel: indel (> 5bp) 9758531 9798660 921320 881183 CM091755.1 scaffold169 99.73 True indel: indel (> 5bp) 9593258 9758310 1086693 921532 CM091755.1 scaffold169 99.34 True indel: indel (<= 5bp) 9579250 9593207 1100698 1086742 CM091755.1 scaffold169 99.42 True indel: indel (> 5bp) 9500627 9579199 1177535 1100771 CM091755.1 scaffold169 95.51 True local misassembly 9494539 9500108 1183158 1177588 CM091755.1 scaffold169 99.23 True indel: indel (> 5bp) 9493188 9494404 1184546 1183330 CM091755.1 scaffold169 99.34 True indel: indel (> 5bp) 9476466 9493151 1201302 1184593 CM091755.1 scaffold169 98.79 True local misassembly 9424462 9476384 1253973 1201588 CM091755.1 scaffold169 99.09 True indel: indel (> 5bp) 9272634 9424387 1407471 1254059 CM091755.1 scaffold169 99.54 True relocation, inconsistency = 8748 9256326 9263885 1407472 1415029 CM091755.1 scaffold169 99.96 True relocation, scaffold gap is present, inconsistency = -122023 9223569 9244795 1569826 1548583 CM091755.1 scaffold169 99.59 True relocation, scaffold gap is present, inconsistency = -62433 9179656 9188714 1676174 1667114 CM091755.1 scaffold169 99.65 True relocation, inconsistency = 16239 9109029 9163416 1730522 1676175 CM091755.1 scaffold169 99.71 True indel: indel (> 5bp) 9069746 9108943 1771223 1730644 CM091755.1 scaffold169 95.97 True indel: indel (> 5bp) 9023162 9069615 1818574 1771360 CM091755.1 scaffold169 96.58 True fake: scaffold gap size wrong estimation (local) 9021857 9022372 1820214 1819699 CM091755.1 scaffold169 99.81 True indel: indel (> 5bp) 9020407 9021446 1821671 1820632 CM091755.1 scaffold169 99.71 True fake: scaffold gap size wrong estimation (local) 9017476 9020156 1825715 1823035 CM091755.1 scaffold169 99.55 True indel: indel (<= 5bp) 9016565 9017124 1826628 1826069 CM091755.1 scaffold169 99.82 True indel: indel (<= 5bp) 9015724 9016564 1827471 1826631 CM091755.1 scaffold169 99.88 True local misassembly 9014436 9015097 1828760 1828099 CM091755.1 scaffold169 99.55 True fake: scaffold gap size wrong estimation (local) 9008100 9013991 1835248 1829206 CM091755.1 scaffold169 96.77 True local misassembly 8968769 9008996 1877218 1835264 CM091755.1 scaffold169 97.5 True local misassembly 8944861 8966886 1902645 1879643 CM091755.1 scaffold169 95.45 True local misassembly 8943009 8945421 1905506 1903094 CM091755.1 scaffold169 99.79 True local misassembly 8940472 8942915 1908287 1905844 CM091755.1 scaffold169 99.71 True indel: indel (> 5bp) 8939281 8940471 1909489 1908299 CM091755.1 scaffold169 97.65 True fake: scaffold gap size wrong estimation (local) 8937516 8939280 1911695 1909931 CM091755.1 scaffold169 99.77 True indel: indel (<= 5bp) 8936339 8937443 1912874 1911770 CM091755.1 scaffold169 98.28 True fake: scaffold gap size wrong estimation (local) 8934553 8935330 1915437 1914660 CM091755.1 scaffold169 99.1 True indel: indel (<= 5bp) 8932928 8934128 1917064 1915864 CM091755.1 scaffold169 99.67 True indel: indel (<= 5bp) 8932367 8932927 1917627 1917067 CM091755.1 scaffold169 100.0 True indel: indel (<= 5bp) 8931662 8932363 1918329 1917628 CM091755.1 scaffold169 100.0 True local misassembly 8929362 8930947 1920636 1919051 CM091755.1 scaffold169 99.62 True indel: indel (<= 5bp) 8928556 8929297 1921440 1920699 CM091755.1 scaffold169 99.87 True indel: indel (<= 5bp) 8926433 8928404 1923565 1921594 CM091755.1 scaffold169 99.54 True indel: indel (> 5bp) 8924362 8926432 1925651 1923581 CM091755.1 scaffold169 99.47 True local misassembly 8922740 8923751 1927280 1926269 CM091755.1 scaffold169 99.7 True indel: indel (<= 5bp) 8920618 8922739 1929403 1927282 CM091755.1 scaffold169 99.76 True indel: indel (<= 5bp) 8919397 8920617 1930626 1929406 CM091755.1 scaffold169 99.92 True indel: indel (<= 5bp) 8917288 8919177 1932731 1930842 CM091755.1 scaffold169 99.47 True local misassembly 8915153 8916473 1935244 1933924 CM091755.1 scaffold169 99.09 True indel: indel (> 5bp) 8914096 8915140 1936289 1935245 CM091755.1 scaffold169 99.43 True fake: scaffold gap size wrong estimation (local) 8912185 8913036 1938732 1937881 CM091755.1 scaffold169 99.41 True indel: indel (<= 5bp) 8911067 8911907 1939852 1939012 CM091755.1 scaffold169 99.64 True local misassembly 8909680 8910200 1941244 1940724 CM091755.1 scaffold169 100.0 True indel: indel (<= 5bp) 8908034 8909423 1942892 1941503 CM091755.1 scaffold169 99.35 True indel: indel (> 5bp) 8905669 8908024 1945248 1942893 CM091755.1 scaffold169 99.87 True indel: indel (<= 5bp) 8903910 8905668 1947008 1945250 CM091755.1 scaffold169 99.72 True indel: indel (<= 5bp) 8903171 8903909 1947748 1947010 CM091755.1 scaffold169 100.0 True indel: indel (<= 5bp) 8902386 8903169 1948532 1947749 CM091755.1 scaffold169 99.87 True indel: stretch of mismatches 8901606 8902118 1949312 1948800 CM091755.1 scaffold169 100.0 True relocation, inconsistency = 19631 8879249 8879924 1952038 1951363 CM091755.1 scaffold169 99.56 True indel: indel (<= 5bp) 8876809 8879248 1954480 1952041 CM091755.1 scaffold169 99.55 True local misassembly 8872879 8875696 1958420 1955603 CM091755.1 scaffold169 99.47 True indel: indel (> 5bp) 8872201 8872841 1959061 1958421 CM091755.1 scaffold169 99.69 True indel: indel (> 5bp) 8871280 8872200 1960002 1959082 CM091755.1 scaffold169 99.46 True indel: indel (<= 5bp) 8870183 8871143 1961097 1960137 CM091755.1 scaffold169 99.69 True indel: indel (> 5bp) 8868189 8869854 1963072 1961407 CM091755.1 scaffold169 99.46 True indel: indel (<= 5bp) 8867616 8868188 1963646 1963074 CM091755.1 scaffold169 99.48 True indel: indel (<= 5bp) 8866789 8867444 1964475 1963820 CM091755.1 scaffold169 99.39 True local misassembly 8864908 8866094 1966370 1965184 CM091755.1 scaffold169 99.83 True indel: indel (<= 5bp) 8864345 8864907 1966934 1966372 CM091755.1 scaffold169 99.29 True indel: indel (<= 5bp) 8863673 8864320 1967608 1966961 CM091755.1 scaffold169 99.85 True fake: scaffold gap size wrong estimation (local) 8862436 8863057 1969186 1968565 CM091755.1 scaffold169 99.84 True indel: indel (> 5bp) 8861378 8862336 1970234 1969276 CM091755.1 scaffold169 99.69 True local misassembly 8849686 8860102 1983080 1972070 CM091755.1 scaffold169 99.41 True CONTIG scaffold169 1983080 misassembled 3848483 3849527 1113 70 CM091768.1 scaffold216 99.04 True translocation, scaffold gap is present 141316 159769 19920 1441 CM091763.1 scaffold216 99.87 True indel: indel (> 5bp) 137497 141196 23893 20063 CM091763.1 scaffold216 96.37 True fake: scaffold gap size wrong estimation (local) 122842 136668 38389 24509 CM091763.1 scaffold216 99.51 True CONTIG scaffold216 38389 misassembled CONTIG scaffold217 457 unaligned CONTIG scaffold218 424 unaligned 4675410 4690402 1 14996 CM091768.1 scaffold219 99.08 True fake: scaffold gap size wrong estimation (local) 4692471 4694203 16166 17917 CM091768.1 scaffold219 98.92 True CONTIG scaffold219 17917 correct 14834293 14839692 1 5363 CM091758.1 scaffold178 97.87 True indel: indel (> 5bp) 14839752 14881625 5432 46682 CM091758.1 scaffold178 96.47 True indel: indel (> 5bp) 14881685 14883770 46751 48842 CM091758.1 scaffold178 98.66 True indel: indel (> 5bp) 14883941 14892058 49022 57998 CM091758.1 scaffold178 99.25 True local misassembly 14889973 14927458 57999 95262 CM091758.1 scaffold178 96.26 True fake: scaffold gap size wrong estimation (local) 14927319 14937697 95788 106130 CM091758.1 scaffold178 99.17 True local misassembly 14938365 14954193 107103 123176 CM091758.1 scaffold178 97.89 True fake: scaffold gap size wrong estimation (local) 14953954 14965281 123999 135368 CM091758.1 scaffold178 98.67 True fake: scaffold gap size wrong estimation (local) 14965384 14973366 136017 144001 CM091758.1 scaffold178 99.31 True local misassembly 14973603 15044572 144332 217479 CM091758.1 scaffold178 98.1 True local misassembly 15044816 15106320 217835 281287 CM091758.1 scaffold178 97.81 True local misassembly 15107283 15108387 281686 282790 CM091758.1 scaffold178 99.19 True local misassembly 15109776 15111487 284188 285899 CM091758.1 scaffold178 99.18 True indel: indel (<= 5bp) 15111488 15112274 285901 286687 CM091758.1 scaffold178 99.62 True local misassembly 15112953 15120295 287357 295015 CM091758.1 scaffold178 97.39 True local misassembly 15120854 15123129 295016 297291 CM091758.1 scaffold178 99.7 True indel: indel (> 5bp) 15123339 15126037 297492 300190 CM091758.1 scaffold178 99.52 True indel: indel (<= 5bp) 15126039 15126581 300191 300733 CM091758.1 scaffold178 99.26 True local misassembly 15126664 15128594 300914 302844 CM091758.1 scaffold178 99.43 True local misassembly 15128871 15130292 302845 304266 CM091758.1 scaffold178 99.16 True indel: indel (<= 5bp) 15130294 15130867 304267 304840 CM091758.1 scaffold178 99.65 True indel: indel (<= 5bp) 15130868 15132003 304845 305980 CM091758.1 scaffold178 99.3 True local misassembly 15133344 15134400 306366 307422 CM091758.1 scaffold178 99.81 True indel: indel (<= 5bp) 15134717 15135531 307741 308555 CM091758.1 scaffold178 99.39 True local misassembly 15137846 15138707 310890 311751 CM091758.1 scaffold178 100.0 True indel: indel (<= 5bp) 15138708 15139924 311753 312969 CM091758.1 scaffold178 99.67 True indel: indel (<= 5bp) 15139926 15140454 312970 313498 CM091758.1 scaffold178 99.43 True indel: indel (<= 5bp) 15140455 15142020 313500 315065 CM091758.1 scaffold178 99.74 True indel: indel (<= 5bp) 15142021 15143024 315067 316070 CM091758.1 scaffold178 99.3 True indel: indel (> 5bp) 15143040 15143867 316071 316898 CM091758.1 scaffold178 99.88 True indel: indel (> 5bp) 15143878 15145993 316899 319014 CM091758.1 scaffold178 99.57 True indel: indel (<= 5bp) 15145994 15147036 319016 320058 CM091758.1 scaffold178 99.62 True indel: indel (> 5bp) 15147037 15149161 320072 322196 CM091758.1 scaffold178 99.62 True indel: indel (> 5bp) 15149240 15149862 322251 322873 CM091758.1 scaffold178 99.04 True indel: indel (<= 5bp) 15149863 15150589 322875 323601 CM091758.1 scaffold178 99.31 True fake: scaffold gap size wrong estimation (local) 15150590 15151967 323944 325321 CM091758.1 scaffold178 99.35 True indel: indel (<= 5bp) 15151968 15152728 325323 326083 CM091758.1 scaffold178 99.87 True local misassembly 15154566 15155203 327982 328619 CM091758.1 scaffold178 99.22 True indel: indel (<= 5bp) 15155660 15156657 329075 330072 CM091758.1 scaffold178 99.6 True indel: indel (> 5bp) 15156675 15157226 330097 330648 CM091758.1 scaffold178 99.82 True indel: indel (<= 5bp) 15157228 15157956 330649 331377 CM091758.1 scaffold178 98.63 True local misassembly 15158241 15160811 332078 334648 CM091758.1 scaffold178 99.57 True local misassembly 15161659 15162260 335247 335845 CM091758.1 scaffold178 96.84 True indel: indel (> 5bp) 15162445 15182439 335946 355732 CM091758.1 scaffold178 97.5 True local misassembly 15182983 15185673 355733 358423 CM091758.1 scaffold178 99.52 True indel: indel (> 5bp) 15185707 15217997 358467 391923 CM091758.1 scaffold178 95.64 True fake: scaffold gap size wrong estimation (local) 15218146 15223670 395132 401106 CM091758.1 scaffold178 99.64 True indel: indel (<= 5bp) 15223698 15283150 401130 463054 CM091758.1 scaffold178 97.87 True CONTIG scaffold178 463055 correct CONTIG scaffold221 366 unaligned 18584167 18584746 5 584 CM091751.1 scaffold212 99.48 True indel: indel (<= 5bp) 18584747 18586829 587 2669 CM091751.1 scaffold212 99.38 True indel: indel (<= 5bp) 18587310 18588003 3148 3841 CM091751.1 scaffold212 98.41 True indel: indel (<= 5bp) 18588008 18590026 3842 5860 CM091751.1 scaffold212 98.76 True indel: indel (> 5bp) 18590055 18591294 5861 7100 CM091751.1 scaffold212 99.84 True local misassembly 18591840 18593007 7647 8814 CM091751.1 scaffold212 99.06 True indel: indel (<= 5bp) 18593011 18594018 8815 9822 CM091751.1 scaffold212 99.21 True local misassembly 18595109 18597924 10530 13345 CM091751.1 scaffold212 99.47 True local misassembly 18604746 18605323 13602 14179 CM091751.1 scaffold212 98.96 True indel: indel (<= 5bp) 18605370 18606331 14225 15186 CM091751.1 scaffold212 98.34 True indel: indel (<= 5bp) 18606333 18607362 15187 16216 CM091751.1 scaffold212 99.22 True indel: indel (<= 5bp) 18607364 18609196 16217 18049 CM091751.1 scaffold212 99.84 True indel: indel (<= 5bp) 18609197 18611038 18051 19892 CM091751.1 scaffold212 99.78 True indel: indel (> 5bp) 18611435 18612082 20313 20960 CM091751.1 scaffold212 99.69 True indel: indel (<= 5bp) 18612468 18612968 21344 21844 CM091751.1 scaffold212 99.6 True indel: indel (<= 5bp) 18613342 18616600 22215 25473 CM091751.1 scaffold212 99.75 True indel: stretch of mismatches 18617042 18618228 25915 27101 CM091751.1 scaffold212 99.49 True indel: indel (<= 5bp) 18618427 18619162 27297 28032 CM091751.1 scaffold212 97.83 True indel: indel (> 5bp) 18619324 18623140 28147 32026 CM091751.1 scaffold212 98.02 True local misassembly 18623301 18632636 32681 42143 CM091751.1 scaffold212 97.37 True local misassembly 18633897 18634454 42889 43446 CM091751.1 scaffold212 99.64 True indel: indel (<= 5bp) 18634945 18635498 43939 44492 CM091751.1 scaffold212 98.74 True local misassembly 18636555 18647537 46030 57029 CM091751.1 scaffold212 99.0 True local misassembly 18647675 18648207 57987 58519 CM091751.1 scaffold212 98.69 True local misassembly 18648744 18649582 59049 59887 CM091751.1 scaffold212 98.69 True local misassembly 18650256 18650867 61191 61802 CM091751.1 scaffold212 99.18 True indel: indel (<= 5bp) 18650868 18651502 61804 62438 CM091751.1 scaffold212 99.53 True indel: indel (<= 5bp) 18651503 18653608 62440 64545 CM091751.1 scaffold212 99.81 True indel: indel (<= 5bp) 18653660 18655868 64596 66804 CM091751.1 scaffold212 99.0 True indel: indel (<= 5bp) 18656123 18658186 67064 69127 CM091751.1 scaffold212 99.32 True indel: indel (> 5bp) 18658199 18659640 69128 70569 CM091751.1 scaffold212 99.24 True indel: indel (<= 5bp) 18659697 18660295 70630 71228 CM091751.1 scaffold212 99.0 True local misassembly 18660877 18661477 71813 72413 CM091751.1 scaffold212 99.83 True local misassembly 18661978 18662663 72915 73600 CM091751.1 scaffold212 99.42 True indel: indel (> 5bp) 18662744 18663847 73708 74811 CM091751.1 scaffold212 99.09 True indel: indel (<= 5bp) 18663849 18664869 74812 75832 CM091751.1 scaffold212 99.41 True indel: indel (<= 5bp) 18664870 18667062 75834 78026 CM091751.1 scaffold212 99.86 True indel: indel (<= 5bp) 18667351 18670272 78317 81238 CM091751.1 scaffold212 99.83 True indel: indel (<= 5bp) 18670738 18672062 81702 83026 CM091751.1 scaffold212 99.62 True local misassembly 18672744 18673631 83712 84599 CM091751.1 scaffold212 99.32 True indel: indel (<= 5bp) 18673632 18674591 84601 85560 CM091751.1 scaffold212 99.79 True local misassembly 18675154 18675832 86126 86804 CM091751.1 scaffold212 99.41 True indel: indel (> 5bp) 18676140 18676870 87088 87818 CM091751.1 scaffold212 98.36 True indel: indel (<= 5bp) 18677265 18677930 88216 88881 CM091751.1 scaffold212 99.7 True local misassembly 18678845 18680074 89795 91024 CM091751.1 scaffold212 99.02 True local misassembly 18681786 18683158 91618 92990 CM091751.1 scaffold212 98.76 True indel: indel (> 5bp) 18683159 18683799 92997 93637 CM091751.1 scaffold212 99.38 True indel: indel (<= 5bp) 18684101 18685437 93942 95278 CM091751.1 scaffold212 98.65 True local misassembly 18685637 18687226 95334 96923 CM091751.1 scaffold212 98.93 True fake: scaffold gap size wrong estimation (local) 18687672 18688792 97730 98850 CM091751.1 scaffold212 99.02 True local misassembly 18690355 18691165 100428 101238 CM091751.1 scaffold212 99.38 True indel: indel (<= 5bp) 18691172 18692833 101247 102908 CM091751.1 scaffold212 99.58 True local misassembly 18693333 18694018 103430 104115 CM091751.1 scaffold212 99.85 True indel: indel (<= 5bp) 18694386 18695082 104485 105181 CM091751.1 scaffold212 99.43 True indel: indel (> 5bp) 18695168 18695721 105280 105833 CM091751.1 scaffold212 99.46 True local misassembly 18696920 18697456 106996 107532 CM091751.1 scaffold212 99.81 True indel: stretch of mismatches 18697493 18698140 107569 108216 CM091751.1 scaffold212 99.69 True indel: indel (<= 5bp) 18698543 18699481 108618 109556 CM091751.1 scaffold212 98.94 True local misassembly 18700720 18701250 110809 111339 CM091751.1 scaffold212 99.81 True local misassembly 18701892 18702484 111985 112577 CM091751.1 scaffold212 98.82 True indel: indel (> 5bp) 18702912 18704649 113024 114761 CM091751.1 scaffold212 99.6 True local misassembly 18705210 18705713 114762 115265 CM091751.1 scaffold212 99.21 True local misassembly 18705275 18736859 115944 147529 CM091751.1 scaffold212 98.96 True indel: indel (> 5bp) 18736935 18751019 147597 161944 CM091751.1 scaffold212 96.28 True fake: scaffold gap size wrong estimation (local) 18751525 18752898 162434 163807 CM091751.1 scaffold212 99.05 True local misassembly 18754398 18755426 164520 165548 CM091751.1 scaffold212 98.93 True indel: indel (> 5bp) 18755583 18756362 165699 166478 CM091751.1 scaffold212 99.36 True local misassembly 18757022 18757833 167138 167949 CM091751.1 scaffold212 99.14 True indel: indel (> 5bp) 18757834 18758502 167957 168625 CM091751.1 scaffold212 99.1 True indel: indel (> 5bp) 18758538 18759481 168642 169585 CM091751.1 scaffold212 99.36 True indel: indel (<= 5bp) 18759801 18761044 169902 171145 CM091751.1 scaffold212 99.68 True indel: indel (<= 5bp) 18761420 18761929 171520 172029 CM091751.1 scaffold212 99.41 True indel: indel (> 5bp) 18762367 18763267 172479 173379 CM091751.1 scaffold212 99.22 True indel: indel (<= 5bp) 18763413 18764008 173527 174122 CM091751.1 scaffold212 98.66 True indel: indel (<= 5bp) 18764009 18765122 174124 175237 CM091751.1 scaffold212 99.37 True local misassembly 18767532 18768764 177644 178876 CM091751.1 scaffold212 99.43 True indel: indel (> 5bp) 18769002 18769662 179162 179822 CM091751.1 scaffold212 98.34 True indel: indel (> 5bp) 18770120 18771084 180273 181237 CM091751.1 scaffold212 99.69 True local misassembly 18772119 18772625 182189 182695 CM091751.1 scaffold212 99.41 True indel: indel (> 5bp) 18772655 18773189 182706 183240 CM091751.1 scaffold212 99.07 True fake: scaffold gap size wrong estimation (local) 18773948 18776977 184333 187372 CM091751.1 scaffold212 98.46 True indel: indel (<= 5bp) 18777251 18778375 187641 188765 CM091751.1 scaffold212 98.84 True CONTIG scaffold212 189252 correct 3603135 3605367 2234 2 CM091754.1 scaffold210 99.37 True local misassembly 3599050 3603340 6970 2608 CM091754.1 scaffold210 98.12 True indel: indel (> 5bp) 3597214 3598989 8731 7001 CM091754.1 scaffold210 96.29 True local misassembly 3593799 3597332 12493 8955 CM091754.1 scaffold210 98.67 True indel: indel (<= 5bp) 3591166 3593701 15125 12589 CM091754.1 scaffold210 99.68 True local misassembly 3589792 3590783 16651 15659 CM091754.1 scaffold210 97.89 True local misassembly 3535412 3589791 72442 17204 CM091754.1 scaffold210 95.03 True fake: scaffold gap size wrong estimation (local) 3515150 3534753 92817 73382 CM091754.1 scaffold210 97.95 True indel: indel (> 5bp) 3514425 3515028 93556 92960 CM091754.1 scaffold210 98.02 True local misassembly 3499568 3513482 107333 93659 CM091754.1 scaffold210 97.2 True CONTIG scaffold210 107333 correct 2993106 3001487 1833 10375 CM091752.1 scaffold224 97.69 True local misassembly 3001617 3005634 11062 15080 CM091752.1 scaffold224 99.9 True indel: indel (<= 5bp) 3005685 3013789 15136 23280 CM091752.1 scaffold224 99.61 True fake: scaffold gap size wrong estimation (local) 3013936 3017343 24094 27499 CM091752.1 scaffold224 99.82 True local misassembly 3016316 3023818 27500 35112 CM091752.1 scaffold224 98.27 True CONTIG scaffold224 35112 correct 1417926 1432460 1 14537 CM091764.1 scaffold225 99.96 True indel: indel (<= 5bp) 1432921 1439886 14996 22023 CM091764.1 scaffold225 99.76 True CONTIG scaffold225 24463 correct 20214162 20261775 1 48075 CM091751.1 scaffold223 98.54 True local misassembly 20264310 20265023 48076 48785 CM091751.1 scaffold223 97.33 True local misassembly 20261881 20296309 48833 83419 CM091751.1 scaffold223 96.55 True relocation, inconsistency = 10774 20308087 20356584 84423 133790 CM091751.1 scaffold223 97.57 True local misassembly 20356663 20438884 134007 217337 CM091751.1 scaffold223 97.33 True fake: scaffold gap size wrong estimation (local) 20438841 20472410 218619 252546 CM091751.1 scaffold223 98.67 True fake: scaffold gap size wrong estimation (local) 20472527 20473873 252672 254018 CM091751.1 scaffold223 99.85 True CONTIG scaffold223 256676 misassembled CONTIG scaffold227 490 unaligned 10868422 10873447 5052 1 CM091758.1 scaffold204 98.46 True local misassembly 10861555 10871772 15271 5053 CM091758.1 scaffold204 99.59 True local misassembly 10644738 10862361 236437 15272 CM091758.1 scaffold204 98.69 True fake: scaffold gap size wrong estimation (local) 10578517 10644592 303221 237156 CM091758.1 scaffold204 99.34 True indel: indel (> 5bp) 10540936 10578464 341602 303317 CM091758.1 scaffold204 99.36 True fake: scaffold gap size wrong estimation (local) 10421707 10540841 464796 342043 CM091758.1 scaffold204 98.65 True indel: indel (> 5bp) 10294057 10421666 593565 464879 CM091758.1 scaffold204 95.43 True local misassembly 10083801 10294009 807429 593856 CM091758.1 scaffold204 99.49 True local misassembly 10083734 10084379 808288 807643 CM091758.1 scaffold204 99.54 True CONTIG scaffold204 808288 correct 1749060 1821738 1 75940 CM091765.1 scaffold144 99.03 True fake: scaffold gap size wrong estimation (local) 1821958 1884513 76719 142873 CM091765.1 scaffold144 99.5 True fake: scaffold gap size wrong estimation (local) 1884818 1948253 143865 211898 CM091765.1 scaffold144 99.27 True indel: indel (> 5bp) 1948589 1949843 212245 213507 CM091765.1 scaffold144 98.73 True fake: scaffold gap size wrong estimation (local) 1949938 2253790 214159 519103 CM091765.1 scaffold144 99.22 True fake: scaffold gap size wrong estimation (local) 2254115 2260522 519397 525810 CM091765.1 scaffold144 99.02 True fake: scaffold gap size wrong estimation (local) 2260629 2288427 526274 555698 CM091765.1 scaffold144 99.47 True fake: scaffold gap size wrong estimation (local) 2288617 2479258 556554 750661 CM091765.1 scaffold144 99.38 True fake: scaffold gap size wrong estimation (local) 2479386 2613947 752278 890058 CM091765.1 scaffold144 98.14 True indel: indel (> 5bp) 2614080 2667654 890224 944088 CM091765.1 scaffold144 98.45 True local misassembly 2668647 2669559 945529 946441 CM091765.1 scaffold144 99.89 True local misassembly 2668758 2684798 946442 962473 CM091765.1 scaffold144 99.32 True local misassembly 2683753 2811478 962474 1091306 CM091765.1 scaffold144 99.2 True indel: indel (> 5bp) 2811523 2896354 1091366 1177324 CM091765.1 scaffold144 98.39 True local misassembly 2896789 2914145 1177612 1196025 CM091765.1 scaffold144 99.25 True indel: indel (> 5bp) 2914272 2999219 1196202 1281163 CM091765.1 scaffold144 99.64 True fake: not a misassembly (possible transposable element) 2998669 2999329 1281825 1281164 CM091765.1 scaffold144 99.32 True fake: not a misassembly (possible transposable element) 2999395 3125792 1281844 1408743 CM091765.1 scaffold144 99.31 True indel: indel (> 5bp) 3125852 3135883 1408810 1418787 CM091765.1 scaffold144 95.94 True local misassembly 3136940 3137858 1419780 1420698 CM091765.1 scaffold144 99.35 True indel: indel (<= 5bp) 3137895 3139413 1420734 1422252 CM091765.1 scaffold144 99.47 True indel: indel (<= 5bp) 3139417 3140005 1422253 1422841 CM091765.1 scaffold144 99.15 True indel: indel (<= 5bp) 3140011 3141894 1422842 1424725 CM091765.1 scaffold144 99.52 True local misassembly 3145589 3147570 1424726 1426707 CM091765.1 scaffold144 99.55 True indel: indel (> 5bp) 3147580 3148542 1426708 1427670 CM091765.1 scaffold144 99.38 True indel: indel (<= 5bp) 3148543 3149264 1427675 1428396 CM091765.1 scaffold144 99.17 True indel: indel (> 5bp) 3149275 3152589 1428397 1431711 CM091765.1 scaffold144 99.46 True local misassembly 3152825 3153610 1432107 1432892 CM091765.1 scaffold144 99.87 True indel: indel (<= 5bp) 3153968 3156550 1433249 1435831 CM091765.1 scaffold144 99.5 True indel: indel (> 5bp) 3156914 3158136 1436189 1437411 CM091765.1 scaffold144 99.02 True indel: indel (<= 5bp) 3158139 3159128 1437412 1438401 CM091765.1 scaffold144 99.8 True indel: indel (> 5bp) 3159150 3160510 1438402 1439762 CM091765.1 scaffold144 99.12 True local misassembly 3161291 3161903 1440542 1441154 CM091765.1 scaffold144 99.84 True indel: indel (<= 5bp) 3161970 3163369 1441223 1442622 CM091765.1 scaffold144 99.43 True indel: indel (<= 5bp) 3163708 3164865 1442959 1444116 CM091765.1 scaffold144 99.65 True local misassembly 3165034 3167939 1444449 1447354 CM091765.1 scaffold144 99.62 True local misassembly 3168046 3169115 1447581 1448650 CM091765.1 scaffold144 99.91 True indel: indel (<= 5bp) 3169118 3169673 1448651 1449206 CM091765.1 scaffold144 99.46 True indel: indel (> 5bp) 3169709 3170460 1449207 1449958 CM091765.1 scaffold144 99.2 True indel: indel (<= 5bp) 3170461 3171146 1449963 1450648 CM091765.1 scaffold144 99.71 True indel: indel (<= 5bp) 3171147 3172330 1450652 1451835 CM091765.1 scaffold144 99.49 True local misassembly 3172733 3174573 1451836 1453676 CM091765.1 scaffold144 99.29 True indel: indel (<= 5bp) 3174574 3175901 1453678 1455005 CM091765.1 scaffold144 99.7 True local misassembly 3176022 3177349 1455006 1456333 CM091765.1 scaffold144 99.62 True indel: indel (> 5bp) 3177350 3178241 1456370 1457261 CM091765.1 scaffold144 99.44 True indel: indel (> 5bp) 3178242 3179085 1457271 1458114 CM091765.1 scaffold144 99.88 True local misassembly 3179661 3185983 1459132 1465450 CM091765.1 scaffold144 98.78 True indel: indel (> 5bp) 3186075 3222591 1465593 1503639 CM091765.1 scaffold144 98.12 True local misassembly 3223200 3225583 1504562 1506945 CM091765.1 scaffold144 99.54 True indel: indel (<= 5bp) 3225584 3226133 1506947 1507496 CM091765.1 scaffold144 99.64 True local misassembly 3227433 3228715 1508799 1510081 CM091765.1 scaffold144 99.84 True local misassembly 3229203 3230177 1510750 1511724 CM091765.1 scaffold144 98.56 True local misassembly 3230577 3231403 1511940 1512766 CM091765.1 scaffold144 99.88 True indel: indel (> 5bp) 3231502 3243417 1512847 1524900 CM091765.1 scaffold144 97.0 True indel: indel (<= 5bp) 3243436 3304754 1524920 1587218 CM091765.1 scaffold144 97.43 True indel: indel (> 5bp) 3304836 3340870 1587284 1623757 CM091765.1 scaffold144 98.01 True local misassembly 3340074 3346404 1623758 1630101 CM091765.1 scaffold144 99.07 True local misassembly 3346547 3351415 1630542 1635418 CM091765.1 scaffold144 97.96 True indel: indel (> 5bp) 3351469 3368770 1635496 1652763 CM091765.1 scaffold144 98.91 True local misassembly 3369086 3398007 1652868 1681650 CM091765.1 scaffold144 98.08 True indel: indel (> 5bp) 3398080 3405149 1681745 1688793 CM091765.1 scaffold144 98.69 True indel: indel (<= 5bp) 3405221 3736889 1688870 2025294 CM091765.1 scaffold144 98.94 True indel: indel (> 5bp) 3736937 3764056 2025413 2054089 CM091765.1 scaffold144 97.24 True local misassembly 3764352 3770713 2054528 2060896 CM091765.1 scaffold144 98.75 True fake: scaffold gap size wrong estimation (local) 3770803 3810446 2060979 2101670 CM091765.1 scaffold144 97.17 True fake: scaffold gap size wrong estimation (local) 3810668 3816068 2102300 2107718 CM091765.1 scaffold144 99.06 True fake: scaffold gap size wrong estimation (local) 3816190 3819023 2108907 2111784 CM091765.1 scaffold144 99.72 True fake: scaffold gap size wrong estimation (local) 3819512 3933285 2112873 2231678 CM091765.1 scaffold144 97.67 True fake: scaffold gap size wrong estimation (local) 3933470 3947016 2232298 2246634 CM091765.1 scaffold144 98.82 True local misassembly 3948258 3949062 2247699 2248503 CM091765.1 scaffold144 99.5 True local misassembly 3949063 3950514 2248941 2250392 CM091765.1 scaffold144 99.52 True indel: indel (<= 5bp) 3950819 3951427 2250694 2251302 CM091765.1 scaffold144 99.18 True indel: indel (<= 5bp) 3951429 3952090 2251303 2251964 CM091765.1 scaffold144 100.0 True indel: indel (<= 5bp) 3952093 3952641 2251965 2252513 CM091765.1 scaffold144 100.0 True fake: scaffold gap size wrong estimation (local) 3953909 3978998 2255172 2281983 CM091765.1 scaffold144 95.87 True fake: scaffold gap size wrong estimation (local) 3979203 4018049 2283145 2322357 CM091765.1 scaffold144 98.6 True fake: scaffold gap size wrong estimation (local) 4018149 4028535 2323082 2333526 CM091765.1 scaffold144 98.59 True indel: indel (> 5bp) 4028651 4043310 2333634 2349567 CM091765.1 scaffold144 95.27 True local misassembly 4042733 4115855 2349568 2423621 CM091765.1 scaffold144 99.27 True fake: scaffold gap size wrong estimation (local) 4116050 4152187 2424255 2461029 CM091765.1 scaffold144 98.51 True fake: scaffold gap size wrong estimation (local) 4152224 4374687 2462949 2687514 CM091765.1 scaffold144 99.21 True indel: indel (> 5bp) 4374735 4451319 2687574 2764478 CM091765.1 scaffold144 99.03 True indel: indel (> 5bp) 4451512 4559144 2764678 2872826 CM091765.1 scaffold144 98.79 True local misassembly 4559610 4582635 2873559 2897148 CM091765.1 scaffold144 96.95 True local misassembly 4583040 4586092 2898076 2901129 CM091765.1 scaffold144 99.44 True indel: indel (> 5bp) 4586166 4608694 2901181 2924298 CM091765.1 scaffold144 96.84 True fake: scaffold gap size wrong estimation (local) 4608887 4656937 2925386 2974065 CM091765.1 scaffold144 98.21 True indel: indel (> 5bp) 4657133 4686996 2974311 3005516 CM091765.1 scaffold144 98.38 True fake: scaffold gap size wrong estimation (local) 4687155 4866898 3005802 3187384 CM091765.1 scaffold144 99.37 True fake: scaffold gap size wrong estimation (local) 4867022 4884148 3188194 3205411 CM091765.1 scaffold144 99.05 True fake: scaffold gap size wrong estimation (local) 4884356 5113523 3206329 3435321 CM091765.1 scaffold144 99.68 True local misassembly 5113824 5220220 3435817 3542342 CM091765.1 scaffold144 99.62 True indel: stretch of mismatches 5220221 5295772 3542343 3619754 CM091765.1 scaffold144 98.39 True indel: indel (<= 5bp) 5295816 5298300 3619800 3622285 CM091765.1 scaffold144 98.83 True local misassembly 5296083 5330649 3622323 3657931 CM091765.1 scaffold144 98.42 True fake: scaffold gap size wrong estimation (local) 5331248 5346883 3659118 3674712 CM091765.1 scaffold144 98.69 True local misassembly 5347468 5399623 3675122 3728216 CM091765.1 scaffold144 98.75 True indel: indel (> 5bp) 5399714 5407106 3728314 3735707 CM091765.1 scaffold144 99.45 True fake: scaffold gap size wrong estimation (local) 5407744 5408749 3736367 3737363 CM091765.1 scaffold144 96.83 True fake: scaffold gap size wrong estimation (local) 5409026 5432878 3738394 3762280 CM091765.1 scaffold144 99.2 True local misassembly 5433014 5586160 3762542 3918229 CM091765.1 scaffold144 98.67 True CONTIG scaffold144 3918229 correct 11201020 11206631 5608 1 CM091765.1 scaffold230 99.31 True CONTIG scaffold230 5608 correct 2607705 2742135 135192 1 CM091755.1 scaffold222 99.57 True indel: indel (> 5bp) 2591563 2607475 151343 135407 CM091755.1 scaffold222 98.73 True local misassembly 2399531 2591496 344182 151868 CM091755.1 scaffold222 99.16 True fake: scaffold gap size wrong estimation (local) 2342165 2399370 405840 344790 CM091755.1 scaffold222 99.4 True local misassembly 2325683 2341746 422171 406126 CM091755.1 scaffold222 99.3 True local misassembly 2230359 2326674 520359 422188 CM091755.1 scaffold222 98.1 True local misassembly 2188580 2230019 563673 521240 CM091755.1 scaffold222 99.76 True fake: scaffold gap size wrong estimation (local) 2061665 2187386 693190 564914 CM091755.1 scaffold222 99.29 True indel: indel (> 5bp) 1952896 2061622 803290 693241 CM091755.1 scaffold222 99.35 True indel: indel (> 5bp) 1943801 1952791 812288 803329 CM091755.1 scaffold222 99.09 True local misassembly 1939274 1945021 818023 812289 CM091755.1 scaffold222 99.51 True CONTIG scaffold222 818023 correct 18920605 18922983 1 2388 CM091751.1 scaffold232 99.12 True local misassembly 18923252 18926957 2566 6294 CM091751.1 scaffold232 98.55 True fake: scaffold gap size wrong estimation (local) 18927314 18933481 6855 13025 CM091751.1 scaffold232 98.77 True indel: indel (> 5bp) 18933717 18934843 13237 14360 CM091751.1 scaffold232 99.11 True fake: scaffold gap size wrong estimation (local) 18935582 18937442 14933 16793 CM091751.1 scaffold232 99.36 True local misassembly 18938152 18938993 17500 18341 CM091751.1 scaffold232 99.52 True local misassembly 18942555 18943648 21926 23019 CM091751.1 scaffold232 99.73 True indel: indel (> 5bp) 18943768 18944287 23130 23649 CM091751.1 scaffold232 98.27 True local misassembly 18944936 18945783 24297 25144 CM091751.1 scaffold232 99.65 True indel: stretch of mismatches 18945829 18946529 25190 25890 CM091751.1 scaffold232 99.43 True indel: indel (<= 5bp) 18946564 18947544 25926 26906 CM091751.1 scaffold232 99.69 True local misassembly 18949606 18950666 28147 29207 CM091751.1 scaffold232 98.21 True indel: indel (> 5bp) 18950777 18951620 29294 30137 CM091751.1 scaffold232 99.76 True indel: indel (<= 5bp) 18951622 18952388 30138 30904 CM091751.1 scaffold232 99.09 True indel: indel (<= 5bp) 18952750 18953539 31264 32053 CM091751.1 scaffold232 99.62 True local misassembly 18955584 18956412 34105 34933 CM091751.1 scaffold232 99.16 True indel: indel (> 5bp) 18956777 18957357 35317 35897 CM091751.1 scaffold232 98.97 True indel: indel (<= 5bp) 18957358 18958177 35899 36718 CM091751.1 scaffold232 99.63 True indel: indel (<= 5bp) 18958179 18960207 36719 38747 CM091751.1 scaffold232 99.16 True local misassembly 18964878 18965508 39541 40171 CM091751.1 scaffold232 99.37 True indel: indel (<= 5bp) 18965849 18966483 40517 41151 CM091751.1 scaffold232 98.74 True local misassembly 18967011 18967826 41681 42496 CM091751.1 scaffold232 99.14 True indel: indel (> 5bp) 18968015 18968536 42675 43196 CM091751.1 scaffold232 98.66 True indel: indel (<= 5bp) 18968584 18969252 43241 43909 CM091751.1 scaffold232 98.95 True local misassembly 18970354 18982523 45046 57271 CM091751.1 scaffold232 98.29 True fake: scaffold gap size wrong estimation (local) 18983467 18984478 59061 60072 CM091751.1 scaffold232 99.7 True indel: indel (> 5bp) 18984479 18985732 60115 61368 CM091751.1 scaffold232 98.8 True indel: stretch of mismatches 18985767 18986715 61403 62351 CM091751.1 scaffold232 99.47 True indel: indel (<= 5bp) 18986873 18987535 62511 63173 CM091751.1 scaffold232 99.25 True indel: indel (<= 5bp) 18987536 18988056 63175 63695 CM091751.1 scaffold232 99.04 True local misassembly 18989050 18997906 64718 73584 CM091751.1 scaffold232 98.28 True CONTIG scaffold232 73584 correct 3076706 3077932 1 1227 CM091752.1 scaffold233 99.67 True local misassembly 3078031 3081347 1486 4812 CM091752.1 scaffold233 99.46 True indel: indel (> 5bp) 3081392 3084816 4877 8229 CM091752.1 scaffold233 97.14 True CONTIG scaffold233 8305 correct 13014089 13072816 59534 1 CM091757.1 scaffold229 99.12 True local misassembly 12994517 13014366 79754 59923 CM091757.1 scaffold229 99.74 True local misassembly 12937495 12994262 137203 80476 CM091757.1 scaffold229 99.74 True local misassembly 12909606 12937459 165819 137718 CM091757.1 scaffold229 99.74 True fake: scaffold gap size wrong estimation (local) 12762928 12909498 313706 166297 CM091757.1 scaffold229 99.2 True indel: indel (> 5bp) 12657548 12762897 422769 313730 CM091757.1 scaffold229 98.38 True CONTIG scaffold229 422769 correct 7299085 7299871 929 143 CM091752.1 scaffold235 99.36 True fake: scaffold gap size wrong estimation (local) 7296332 7297929 3901 2250 CM091752.1 scaffold235 97.49 True CONTIG scaffold235 3901 correct 9936082 9988455 1 52546 CM091765.1 scaffold236 99.6 True CONTIG scaffold236 52546 correct 12934116 13016847 2 83132 CM091754.1 scaffold220 98.85 True fake: scaffold gap size wrong estimation (local) 13018450 13130537 84165 197686 CM091754.1 scaffold220 98.84 True indel: indel (> 5bp) 13130651 13288576 197741 357531 CM091754.1 scaffold220 98.8 True fake: scaffold gap size wrong estimation (local) 13290454 13291430 359423 360399 CM091754.1 scaffold220 99.8 True indel: indel (<= 5bp) 13291586 13293107 360558 362079 CM091754.1 scaffold220 99.34 True indel: indel (> 5bp) 13293233 13294294 362212 363273 CM091754.1 scaffold220 99.91 True local misassembly 13296014 13297049 363846 364881 CM091754.1 scaffold220 99.61 True indel: stretch of mismatches 13297250 13298389 365082 366221 CM091754.1 scaffold220 99.47 True indel: indel (<= 5bp) 13298422 13300275 366250 368103 CM091754.1 scaffold220 99.3 True local misassembly 13301028 13317725 368837 385524 CM091754.1 scaffold220 98.94 True local misassembly 13318653 13319378 387511 388236 CM091754.1 scaffold220 99.04 True indel: indel (<= 5bp) 13319764 13320378 388624 389238 CM091754.1 scaffold220 99.84 True indel: indel (<= 5bp) 13320477 13322906 389339 391768 CM091754.1 scaffold220 99.63 True fake: scaffold gap size wrong estimation (local) 13323718 13326418 393291 395988 CM091754.1 scaffold220 99.04 True local misassembly 13327347 13327874 397179 397706 CM091754.1 scaffold220 99.81 True indel: indel (<= 5bp) 13327875 13329388 397708 399221 CM091754.1 scaffold220 99.74 True indel: stretch of mismatches 13329451 13331310 399284 401143 CM091754.1 scaffold220 99.46 True indel: indel (<= 5bp) 13331312 13331969 401144 401801 CM091754.1 scaffold220 99.24 True local misassembly 13332562 13353642 403157 424201 CM091754.1 scaffold220 98.89 True local misassembly 13352667 13383268 424203 454821 CM091754.1 scaffold220 99.33 True local misassembly 13383328 13472886 455052 545083 CM091754.1 scaffold220 99.37 True local misassembly 13472987 13478092 546747 551951 CM091754.1 scaffold220 98.06 True relocation, inconsistency = -18331 13478193 13494177 570383 586323 CM091754.1 scaffold220 99.19 True local misassembly 13494278 13520766 587369 614086 CM091754.1 scaffold220 98.75 True local misassembly 13520867 13524201 614839 618187 CM091754.1 scaffold220 98.69 True local misassembly 13529572 13555516 625481 652534 CM091754.1 scaffold220 99.27 True fake: scaffold gap size wrong estimation (local) 13557159 13663264 657839 765313 CM091754.1 scaffold220 98.95 True local misassembly 13664251 13730139 765921 832215 CM091754.1 scaffold220 99.24 True indel: indel (> 5bp) 13730188 13737186 832278 840000 CM091754.1 scaffold220 99.19 True local misassembly 13737677 13793441 840722 896688 CM091754.1 scaffold220 98.99 True indel: indel (> 5bp) 13793500 13826771 896767 930294 CM091754.1 scaffold220 97.82 True indel: indel (> 5bp) 13826801 13833090 930361 936638 CM091754.1 scaffold220 99.0 True fake: scaffold gap size wrong estimation (local) 13832477 13833261 936676 937461 CM091754.1 scaffold220 99.49 True indel: indel (> 5bp) 13833357 13834407 937514 938572 CM091754.1 scaffold220 98.49 True indel: indel (> 5bp) 13834512 13836698 938684 940859 CM091754.1 scaffold220 97.58 True local misassembly 13835861 13867650 940876 972498 CM091754.1 scaffold220 98.41 True fake: scaffold gap size wrong estimation (local) 13868030 13918970 973405 1024169 CM091754.1 scaffold220 98.15 True indel: indel (> 5bp) 13919039 13925366 1024247 1030592 CM091754.1 scaffold220 99.34 True indel: indel (> 5bp) 13925472 13989032 1030658 1095188 CM091754.1 scaffold220 97.55 True indel: indel (> 5bp) 13989368 14034940 1095577 1142027 CM091754.1 scaffold220 97.86 True fake: scaffold gap size wrong estimation (local) 14035034 14118941 1142845 1227590 CM091754.1 scaffold220 98.44 True local misassembly 14119184 14145294 1228245 1254597 CM091754.1 scaffold220 98.23 True indel: indel (<= 5bp) 14145451 14151693 1254757 1261001 CM091754.1 scaffold220 99.34 True local misassembly 14152014 14319469 1263080 1431388 CM091754.1 scaffold220 98.61 True fake: not a misassembly (possible transposable element) 2733042 2734222 1432571 1431389 CM091754.1 scaffold220 97.97 True fake: not a misassembly (possible transposable element) 14319356 14319867 1432576 1433087 CM091754.1 scaffold220 98.83 True fake: scaffold gap size wrong estimation (local) 14319725 14350477 1433287 1464284 CM091754.1 scaffold220 97.83 True fake: scaffold gap size wrong estimation (local) 14350468 14353680 1464886 1468099 CM091754.1 scaffold220 99.94 True indel: indel (> 5bp) 14353829 14492347 1468287 1609190 CM091754.1 scaffold220 97.97 True local misassembly 14491495 14620081 1609191 1739054 CM091754.1 scaffold220 99.36 True fake: not a misassembly (possible transposable element) 14619163 14620034 1739929 1739058 CM091754.1 scaffold220 100.0 True fake: not a misassembly (possible transposable element) 14620119 14700527 1739930 1821384 CM091754.1 scaffold220 99.71 True fake: scaffold gap size wrong estimation (local) 14700826 14733983 1822543 1857825 CM091754.1 scaffold220 99.43 True indel: indel (> 5bp) 14734008 14743591 1857900 1867779 CM091754.1 scaffold220 99.58 True fake: scaffold gap size wrong estimation (local) 14743697 14748741 1868654 1874064 CM091754.1 scaffold220 98.7 True fake: scaffold gap size wrong estimation (local) 14749831 14756819 1875272 1882662 CM091754.1 scaffold220 98.72 True fake: scaffold gap size wrong estimation (local) 14756961 14759103 1882809 1885000 CM091754.1 scaffold220 99.3 True fake: scaffold gap size wrong estimation (local) 14759630 14760544 1885804 1886736 CM091754.1 scaffold220 100.0 True fake: scaffold gap size wrong estimation (local) 14761500 14763066 1888914 1890541 CM091754.1 scaffold220 98.95 True fake: scaffold gap size wrong estimation (local) 14763182 14765371 1890651 1892912 CM091754.1 scaffold220 99.08 True CONTIG scaffold220 1892912 misassembled CONTIG scaffold238 583 unaligned CONTIG scaffold239 453 unaligned CONTIG scaffold240 379 unaligned 17344377 17345992 1 1657 CM091751.1 scaffold241 96.14 True fake: scaffold gap size wrong estimation (local) 17346388 17346983 2749 3345 CM091751.1 scaffold241 99.66 True CONTIG scaffold241 3345 correct 3205333 3215368 1 10067 CM091752.1 scaffold242 99.6 True indel: indel (<= 5bp) 3215421 3221326 10123 16050 CM091752.1 scaffold242 99.39 True CONTIG scaffold242 16050 correct CONTIG scaffold243 605 unaligned 1838871 1842983 43 4186 CM091768.1 scaffold244 96.76 True indel: indel (<= 5bp) 1843105 1845702 4307 6909 CM091768.1 scaffold244 99.35 True local misassembly 1846776 1848504 7972 9700 CM091768.1 scaffold244 99.42 True local misassembly 1850993 1852274 12352 13633 CM091768.1 scaffold244 99.61 True local misassembly 1853568 1857242 13721 17411 CM091768.1 scaffold244 98.62 True fake: scaffold gap size wrong estimation (local) 1858645 1863778 18776 23915 CM091768.1 scaffold244 98.87 True local misassembly 1864387 1891537 24541 54505 CM091768.1 scaffold244 98.47 True indel: stretch of mismatches 1891644 1907679 54612 71091 CM091768.1 scaffold244 99.24 True indel: indel (> 5bp) 1907872 1920326 71350 83778 CM091768.1 scaffold244 98.97 True indel: indel (> 5bp) 1920379 1949887 83878 114480 CM091768.1 scaffold244 98.53 True indel: indel (> 5bp) 1949935 1958845 114560 123711 CM091768.1 scaffold244 97.03 True local misassembly 1959576 1960144 123807 124375 CM091768.1 scaffold244 98.42 True indel: indel (<= 5bp) 1960145 1960673 124377 124905 CM091768.1 scaffold244 100.0 True fake: scaffold gap size wrong estimation (local) 1961485 1962350 126025 126890 CM091768.1 scaffold244 99.54 True indel: indel (<= 5bp) 1962351 1963178 126892 127719 CM091768.1 scaffold244 99.52 True indel: indel (<= 5bp) 1963458 1964136 128002 128680 CM091768.1 scaffold244 100.0 True local misassembly 1965101 1984088 130360 149181 CM091768.1 scaffold244 96.07 True local misassembly 1985302 1986179 150901 151778 CM091768.1 scaffold244 99.43 True local misassembly 1986333 1987640 152065 153372 CM091768.1 scaffold244 99.62 True local misassembly 1988074 1989160 153618 154704 CM091768.1 scaffold244 99.08 True local misassembly 1990498 1991338 155999 156839 CM091768.1 scaffold244 98.57 True local misassembly 1992070 1993001 157573 158504 CM091768.1 scaffold244 99.57 True indel: indel (<= 5bp) 1993346 1994149 158851 159654 CM091768.1 scaffold244 99.25 True indel: indel (<= 5bp) 1994232 1996898 159738 162404 CM091768.1 scaffold244 99.81 True indel: indel (<= 5bp) 1996901 1997988 162405 163492 CM091768.1 scaffold244 98.62 True local misassembly 1999266 2000267 163493 164494 CM091768.1 scaffold244 99.1 True indel: stretch of mismatches 2000445 2001423 164672 165650 CM091768.1 scaffold244 99.69 True indel: indel (<= 5bp) 2001424 2001958 165652 166186 CM091768.1 scaffold244 99.25 True local misassembly 1999544 2002316 166197 168971 CM091768.1 scaffold244 99.03 True local misassembly 2003632 2005152 169683 171203 CM091768.1 scaffold244 99.87 True local misassembly 2005702 2006303 172365 172966 CM091768.1 scaffold244 100.0 True indel: indel (<= 5bp) 2006434 2007287 173098 173951 CM091768.1 scaffold244 99.53 True indel: indel (> 5bp) 2007454 2008294 174109 174949 CM091768.1 scaffold244 99.05 True local misassembly 2009088 2009595 175749 176256 CM091768.1 scaffold244 99.41 True local misassembly 2011131 2012097 177064 178030 CM091768.1 scaffold244 99.9 True indel: indel (> 5bp) 2012577 2014308 178503 180234 CM091768.1 scaffold244 99.36 True indel: indel (> 5bp) 2014829 2016465 180692 182328 CM091768.1 scaffold244 99.57 True local misassembly 2016466 2017467 182545 183546 CM091768.1 scaffold244 98.8 True indel: indel (<= 5bp) 2017468 2018233 183548 184313 CM091768.1 scaffold244 99.48 True indel: indel (<= 5bp) 2018235 2021485 184314 187564 CM091768.1 scaffold244 99.26 True indel: indel (> 5bp) 2021500 2022978 187565 189043 CM091768.1 scaffold244 99.26 True local misassembly 2023551 2025388 189044 190881 CM091768.1 scaffold244 98.2 True indel: indel (<= 5bp) 2025389 2029507 190883 195001 CM091768.1 scaffold244 99.39 True indel: indel (<= 5bp) 2029649 2030696 195148 196195 CM091768.1 scaffold244 98.0 True local misassembly 2031667 2032322 197806 198461 CM091768.1 scaffold244 100.0 True indel: indel (<= 5bp) 2032714 2033687 198852 199825 CM091768.1 scaffold244 98.46 True indel: indel (<= 5bp) 2033688 2035256 199827 201395 CM091768.1 scaffold244 99.17 True indel: indel (> 5bp) 2035320 2036350 201434 202464 CM091768.1 scaffold244 99.42 True local misassembly 2037759 2039313 203884 205438 CM091768.1 scaffold244 99.49 True indel: indel (<= 5bp) 2039801 2040774 205921 206894 CM091768.1 scaffold244 100.0 True indel: stretch of mismatches 2041141 2042333 207261 208453 CM091768.1 scaffold244 99.58 True indel: indel (<= 5bp) 2042335 2043267 208454 209386 CM091768.1 scaffold244 99.36 True local misassembly 2043530 2044382 210488 211340 CM091768.1 scaffold244 99.06 True local misassembly 2045020 2046138 211673 212791 CM091768.1 scaffold244 98.84 True local misassembly 2046764 2047927 213185 214348 CM091768.1 scaffold244 99.66 True indel: stretch of mismatches 2048054 2050882 214475 217303 CM091768.1 scaffold244 99.47 True fake: scaffold gap size wrong estimation (local) 2051102 2052165 217637 218700 CM091768.1 scaffold244 99.44 True indel: indel (<= 5bp) 2052166 2053486 218702 220022 CM091768.1 scaffold244 99.77 True indel: indel (<= 5bp) 2053492 2054315 220023 220846 CM091768.1 scaffold244 98.3 True indel: indel (> 5bp) 2054316 2054917 220855 221456 CM091768.1 scaffold244 98.17 True local misassembly 2057958 2058478 223923 224443 CM091768.1 scaffold244 99.42 True indel: indel (<= 5bp) 2058480 2059102 224444 225066 CM091768.1 scaffold244 98.56 True local misassembly 2060056 2060696 225297 225937 CM091768.1 scaffold244 99.53 True local misassembly 2061423 2062293 226666 227536 CM091768.1 scaffold244 99.54 True indel: indel (<= 5bp) 2062294 2065793 227538 231037 CM091768.1 scaffold244 99.66 True indel: indel (<= 5bp) 2065794 2067363 231039 232608 CM091768.1 scaffold244 99.36 True indel: indel (> 5bp) 2067393 2067975 232609 233191 CM091768.1 scaffold244 98.46 True indel: indel (<= 5bp) 2067979 2070688 233192 235901 CM091768.1 scaffold244 99.3 True indel: indel (> 5bp) 2070828 2071742 236066 236979 CM091768.1 scaffold244 99.13 True local misassembly 2072089 2072652 237694 238257 CM091768.1 scaffold244 98.23 True local misassembly 2072653 2075615 238592 241554 CM091768.1 scaffold244 98.79 True indel: indel (<= 5bp) 2075949 2079304 241883 245238 CM091768.1 scaffold244 98.9 True indel: indel (> 5bp) 2079542 2080185 245431 246074 CM091768.1 scaffold244 98.29 True indel: indel (<= 5bp) 2080186 2080718 246076 246608 CM091768.1 scaffold244 98.69 True local misassembly 2082280 2083289 247797 248806 CM091768.1 scaffold244 98.91 True indel: indel (<= 5bp) 2083761 2084670 249283 250192 CM091768.1 scaffold244 99.23 True indel: indel (> 5bp) 2084671 2085248 250205 250782 CM091768.1 scaffold244 98.62 True indel: indel (<= 5bp) 2085633 2087400 251169 252936 CM091768.1 scaffold244 99.43 True indel: indel (<= 5bp) 2087469 2089275 253007 254813 CM091768.1 scaffold244 99.11 True local misassembly 2090613 2091223 256140 256750 CM091768.1 scaffold244 99.67 True indel: indel (<= 5bp) 2091224 2091946 256752 257474 CM091768.1 scaffold244 99.72 True indel: indel (<= 5bp) 2091947 2093102 257476 258631 CM091768.1 scaffold244 99.31 True indel: indel (<= 5bp) 2093104 2094106 258632 259634 CM091768.1 scaffold244 99.4 True indel: indel (> 5bp) 2094209 2095483 259743 261017 CM091768.1 scaffold244 98.67 True indel: indel (<= 5bp) 2095484 2096005 261019 261540 CM091768.1 scaffold244 99.43 True local misassembly 2096432 2097738 262114 263420 CM091768.1 scaffold244 99.62 True local misassembly 2098419 2099200 264096 264877 CM091768.1 scaffold244 99.23 True fake: scaffold gap size wrong estimation (local) 2099201 2100737 265019 266555 CM091768.1 scaffold244 99.61 True indel: indel (> 5bp) 2100750 2101694 266580 267524 CM091768.1 scaffold244 98.94 True indel: indel (<= 5bp) 2101840 2102411 267672 268243 CM091768.1 scaffold244 100.0 True indel: indel (<= 5bp) 2102413 2104274 268244 270105 CM091768.1 scaffold244 99.36 True local misassembly 2104719 2105300 270223 270804 CM091768.1 scaffold244 99.48 True local misassembly 2105406 2107268 270805 272667 CM091768.1 scaffold244 99.09 True indel: indel (<= 5bp) 2107269 2108083 272669 273483 CM091768.1 scaffold244 99.51 True indel: indel (<= 5bp) 2108084 2108656 273486 274058 CM091768.1 scaffold244 99.65 True local misassembly 2109433 2129834 275028 295037 CM091768.1 scaffold244 96.7 True local misassembly 2130111 2152643 295170 318086 CM091768.1 scaffold244 96.95 True local misassembly 2153029 2161823 318885 327839 CM091768.1 scaffold244 96.57 True local misassembly 2162100 2162769 328307 328977 CM091768.1 scaffold244 98.96 True local misassembly 2165627 2166573 332302 333248 CM091768.1 scaffold244 98.73 True indel: indel (> 5bp) 2166652 2193205 333343 359373 CM091768.1 scaffold244 95.96 True fake: scaffold gap size wrong estimation (local) 2194661 2195411 361141 361891 CM091768.1 scaffold244 100.0 True indel: indel (> 5bp) 2195735 2196274 362221 362760 CM091768.1 scaffold244 99.63 True indel: indel (<= 5bp) 2196276 2197640 362761 364125 CM091768.1 scaffold244 99.93 True local misassembly 2198161 2199001 364647 365487 CM091768.1 scaffold244 99.76 True indel: indel (<= 5bp) 2199003 2199973 365488 366458 CM091768.1 scaffold244 99.38 True local misassembly 2201376 2307837 368610 479630 CM091768.1 scaffold244 97.2 True indel: indel (> 5bp) 2308093 2309054 479940 480901 CM091768.1 scaffold244 99.79 True indel: indel (<= 5bp) 2309056 2309755 480902 481601 CM091768.1 scaffold244 97.86 True indel: indel (<= 5bp) 2310062 2310657 481910 482505 CM091768.1 scaffold244 99.33 True local misassembly 2311697 2323207 483752 495025 CM091768.1 scaffold244 96.63 True fake: scaffold gap size wrong estimation (local) 2324439 2324938 496020 496519 CM091768.1 scaffold244 97.0 True local misassembly 2325581 2327924 496520 498863 CM091768.1 scaffold244 99.53 True local misassembly 2328366 2341320 499130 511899 CM091768.1 scaffold244 95.99 True local misassembly 2342650 2343675 513112 514137 CM091768.1 scaffold244 99.71 True indel: indel (<= 5bp) 2343676 2344627 514139 515090 CM091768.1 scaffold244 99.58 True indel: indel (<= 5bp) 2344629 2345481 515091 515943 CM091768.1 scaffold244 98.36 True local misassembly 2345936 2351015 516107 521320 CM091768.1 scaffold244 95.22 True local misassembly 2351607 2356558 522016 526985 CM091768.1 scaffold244 98.59 True local misassembly 2357731 2359149 528697 530115 CM091768.1 scaffold244 99.08 True local misassembly 2359700 2362022 530827 533153 CM091768.1 scaffold244 97.91 True local misassembly 2363018 2364598 534258 535838 CM091768.1 scaffold244 99.43 True local misassembly 2366105 2366772 536819 537486 CM091768.1 scaffold244 97.9 True indel: indel (<= 5bp) 2366773 2367301 537488 538016 CM091768.1 scaffold244 100.0 True fake: scaffold gap size wrong estimation (local) 2369341 2372982 541740 545386 CM091768.1 scaffold244 98.69 True fake: scaffold gap size wrong estimation (local) 2373560 2375957 546132 548539 CM091768.1 scaffold244 98.88 True CONTIG scaffold244 548586 correct 315508 323828 1040 10518 CM091751.1 scaffold231 98.85 True fake: scaffold gap size wrong estimation (local) 323962 336262 10645 23238 CM091751.1 scaffold231 98.6 True fake: scaffold gap size wrong estimation (local) 336582 362653 23696 51765 CM091751.1 scaffold231 96.5 True fake: scaffold gap size wrong estimation (local) 362647 400429 52245 91065 CM091751.1 scaffold231 98.78 True fake: scaffold gap size wrong estimation (local) 400526 838275 91238 536125 CM091751.1 scaffold231 98.72 True indel: indel (> 5bp) 838392 842660 536190 540457 CM091751.1 scaffold231 99.67 True indel: indel (<= 5bp) 842711 885162 540504 583996 CM091751.1 scaffold231 98.24 True fake: scaffold gap size wrong estimation (local) 885300 934099 585034 634534 CM091751.1 scaffold231 98.5 True local misassembly 934862 1092856 635179 793341 CM091751.1 scaffold231 98.97 True fake: scaffold gap size wrong estimation (local) 1093115 1300738 794003 1000375 CM091751.1 scaffold231 98.58 True local misassembly 1300761 1403353 1000865 1103328 CM091751.1 scaffold231 98.18 True local misassembly 1403585 1537925 1104006 1239448 CM091751.1 scaffold231 99.01 True indel: indel (> 5bp) 1538027 1555474 1239534 1257051 CM091751.1 scaffold231 98.69 True local misassembly 1555586 1568360 1257052 1269852 CM091751.1 scaffold231 99.01 True indel: indel (> 5bp) 1568412 1788963 1269939 1489304 CM091751.1 scaffold231 95.52 True indel: indel (<= 5bp) 1789206 1791146 1489543 1491483 CM091751.1 scaffold231 99.48 True indel: indel (<= 5bp) 1791369 1793789 1491708 1494128 CM091751.1 scaffold231 99.46 True local misassembly 1794376 1795285 1494717 1495626 CM091751.1 scaffold231 100.0 True local misassembly 1796686 1798001 1497075 1498390 CM091751.1 scaffold231 99.77 True indel: indel (<= 5bp) 1798007 1798807 1498391 1499191 CM091751.1 scaffold231 99.38 True indel: indel (<= 5bp) 1799104 1799985 1499487 1500368 CM091751.1 scaffold231 99.66 True indel: indel (> 5bp) 1799986 1801107 1500385 1501506 CM091751.1 scaffold231 99.55 True local misassembly 1801953 1803495 1501669 1503211 CM091751.1 scaffold231 99.22 True indel: indel (<= 5bp) 1803970 1804755 1503684 1504469 CM091751.1 scaffold231 99.36 True indel: indel (<= 5bp) 1804756 1806143 1504471 1505858 CM091751.1 scaffold231 99.93 True indel: indel (> 5bp) 1806146 1807027 1505870 1506751 CM091751.1 scaffold231 99.43 True indel: indel (<= 5bp) 1807029 1807924 1506752 1507647 CM091751.1 scaffold231 99.67 True local misassembly 1809653 1810726 1509369 1510442 CM091751.1 scaffold231 99.72 True indel: indel (<= 5bp) 1811143 1812116 1510857 1511830 CM091751.1 scaffold231 99.9 True local misassembly 1812442 1813672 1512734 1513964 CM091751.1 scaffold231 99.27 True indel: indel (<= 5bp) 1813850 1825838 1514147 1526067 CM091751.1 scaffold231 98.28 True indel: indel (> 5bp) 1825865 1880186 1526108 1581284 CM091751.1 scaffold231 98.82 True CONTIG scaffold231 1584544 correct CONTIG scaffold246 409 unaligned 15632644 15650412 1 18182 CM091754.1 scaffold215 99.21 True fake: scaffold gap size wrong estimation (local) 15651128 15654836 19354 23063 CM091754.1 scaffold215 99.81 True local misassembly 15654988 15740814 23372 111295 CM091754.1 scaffold215 99.0 True indel: stretch of mismatches 15740922 15757890 111403 128441 CM091754.1 scaffold215 99.58 True fake: scaffold gap size wrong estimation (local) 15758123 15766495 128754 137121 CM091754.1 scaffold215 99.57 True indel: indel (> 5bp) 15766669 15795701 137301 167862 CM091754.1 scaffold215 99.33 True local misassembly 15794704 15814886 167863 188637 CM091754.1 scaffold215 99.54 True local misassembly 15813565 15978137 188638 357116 CM091754.1 scaffold215 99.45 True indel: indel (> 5bp) 15978225 15988937 357193 367930 CM091754.1 scaffold215 98.82 True indel: indel (> 5bp) 15989039 16019329 367983 401713 CM091754.1 scaffold215 97.5 True fake: scaffold gap size wrong estimation (local) 16019438 16044685 402039 428462 CM091754.1 scaffold215 97.66 True local misassembly 16044259 16111499 428731 498655 CM091754.1 scaffold215 99.38 True fake: scaffold gap size wrong estimation (local) 16111667 16143311 499812 531357 CM091754.1 scaffold215 98.88 True local misassembly 16143911 16155170 532102 543387 CM091754.1 scaffold215 99.15 True indel: indel (<= 5bp) 16155254 16264406 543467 657570 CM091754.1 scaffold215 99.37 True fake: scaffold gap size wrong estimation (local) 16264534 16316426 657962 712575 CM091754.1 scaffold215 98.59 True fake: scaffold gap size wrong estimation (local) 16316641 16318034 712908 714317 CM091754.1 scaffold215 98.23 True local misassembly 16318107 16551812 714877 952452 CM091754.1 scaffold215 99.27 True fake: scaffold gap size wrong estimation (local) 16552025 16552712 952966 953653 CM091754.1 scaffold215 100.0 True fake: scaffold gap size wrong estimation (local) 16553043 16637632 954269 1039585 CM091754.1 scaffold215 98.87 True local misassembly 16638095 16657304 1041142 1060579 CM091754.1 scaffold215 99.56 True fake: scaffold gap size wrong estimation (local) 16657445 16658297 1061712 1062564 CM091754.1 scaffold215 99.88 True indel: indel (<= 5bp) 16658298 16658864 1062566 1063132 CM091754.1 scaffold215 99.82 True indel: indel (<= 5bp) 16658865 16659678 1063134 1063947 CM091754.1 scaffold215 99.75 True indel: indel (<= 5bp) 16659712 16660227 1063983 1064498 CM091754.1 scaffold215 100.0 True indel: indel (<= 5bp) 16660237 16661629 1064510 1065902 CM091754.1 scaffold215 99.86 True indel: indel (<= 5bp) 16662063 16662601 1066338 1066876 CM091754.1 scaffold215 99.63 True fake: scaffold gap size wrong estimation (local) 16663458 16667137 1068230 1071909 CM091754.1 scaffold215 99.95 True indel: stretch of mismatches 16667583 16671280 1072355 1076052 CM091754.1 scaffold215 99.81 True indel: indel (<= 5bp) 16671543 16673508 1076317 1078282 CM091754.1 scaffold215 99.95 True indel: indel (<= 5bp) 16673510 16674031 1078283 1078804 CM091754.1 scaffold215 100.0 True local misassembly 16674296 16678312 1080153 1084169 CM091754.1 scaffold215 99.9 True local misassembly 16678350 16726754 1084767 1133675 CM091754.1 scaffold215 98.65 True fake: scaffold gap size wrong estimation (local) 16729438 16931908 1134357 1340173 CM091754.1 scaffold215 99.38 True fake: scaffold gap size wrong estimation (local) 16932289 16959505 1340613 1369898 CM091754.1 scaffold215 97.5 True local misassembly 16959532 16961372 1370432 1372273 CM091754.1 scaffold215 99.95 True fake: scaffold gap size wrong estimation (local) 16961489 16969925 1372464 1380902 CM091754.1 scaffold215 99.91 True indel: indel (<= 5bp) 16970006 16998875 1380979 1411988 CM091754.1 scaffold215 96.77 True local misassembly 16998513 16999348 1412387 1413222 CM091754.1 scaffold215 99.76 True CONTIG scaffold215 1413222 correct CONTIG scaffold248 432 unaligned 11714608 11743247 30658 1 CM091763.1 scaffold228 97.6 True indel: indel (> 5bp) 11544529 11714391 206785 30848 CM091763.1 scaffold228 98.18 True indel: indel (> 5bp) 11538589 11544420 213018 206917 CM091763.1 scaffold228 99.33 True fake: scaffold gap size wrong estimation (local) 11522304 11538334 231502 213406 CM091763.1 scaffold228 96.65 True fake: scaffold gap size wrong estimation (local) 11516598 11522103 238263 232797 CM091763.1 scaffold228 99.11 True fake: scaffold gap size wrong estimation (local) 11512369 11515149 244391 241586 CM091763.1 scaffold228 99.08 True fake: not a misassembly (possible transposable element) 8028015 8028648 244434 245066 CM091759.1 scaffold228 99.84 True fake: not a misassembly (possible transposable element) 11503519 11512264 254162 245067 CM091763.1 scaffold228 98.6 True fake: scaffold gap size wrong estimation (local) 11485923 11503434 273291 254277 CM091763.1 scaffold228 98.35 True fake: scaffold gap size wrong estimation (local) 11481096 11485597 278102 273580 CM091763.1 scaffold228 99.78 True fake: scaffold gap size wrong estimation (local) 11477465 11480590 282126 278916 CM091763.1 scaffold228 98.94 True local misassembly 11471162 11477407 288761 282483 CM091763.1 scaffold228 98.94 True fake: scaffold gap size wrong estimation (local) 11469760 11470397 290600 289963 CM091763.1 scaffold228 99.53 True indel: indel (<= 5bp) 11468279 11469577 292083 290785 CM091763.1 scaffold228 99.77 True indel: indel (> 5bp) 11467654 11468271 292701 292084 CM091763.1 scaffold228 100.0 True fake: scaffold gap size wrong estimation (local) 11466457 11467390 293973 293040 CM091763.1 scaffold228 97.43 True fake: scaffold gap size wrong estimation (local) 11464857 11465401 295991 295447 CM091763.1 scaffold228 100.0 True local misassembly 11458547 11465179 304056 296201 CM091763.1 scaffold228 99.16 True local misassembly 11457576 11458480 305380 304476 CM091763.1 scaffold228 100.0 True local misassembly 11456274 11457095 307099 306278 CM091763.1 scaffold228 100.0 True fake: scaffold gap size wrong estimation (local) 11454620 11456175 308812 307221 CM091763.1 scaffold228 99.23 True fake: scaffold gap size wrong estimation (local) 11452544 11454071 311571 309953 CM091763.1 scaffold228 99.59 True fake: scaffold gap size wrong estimation (local) 11449532 11450540 314402 313394 CM091763.1 scaffold228 99.7 True local misassembly 11448154 11449129 316390 315415 CM091763.1 scaffold228 99.49 True indel: indel (<= 5bp) 11446535 11448152 318008 316391 CM091763.1 scaffold228 99.75 True local misassembly 11443679 11446004 320842 318517 CM091763.1 scaffold228 100.0 True indel: indel (<= 5bp) 11442737 11443678 321785 320844 CM091763.1 scaffold228 99.58 True indel: indel (<= 5bp) 11441250 11442734 323270 321786 CM091763.1 scaffold228 99.8 True fake: scaffold gap size wrong estimation (local) 11427888 11440882 338608 323835 CM091763.1 scaffold228 98.98 True fake: scaffold gap size wrong estimation (local) 11425883 11427688 340896 338979 CM091763.1 scaffold228 99.39 True CONTIG scaffold228 340896 correct 16058579 16063810 5233 1 CM091757.1 scaffold250 99.96 True local misassembly 16040357 16059285 24351 5234 CM091757.1 scaffold250 98.73 True fake: scaffold gap size wrong estimation (local) 16017301 16040195 47717 24689 CM091757.1 scaffold250 99.35 True fake: scaffold gap size wrong estimation (local) 16015069 16017170 49940 47829 CM091757.1 scaffold250 99.76 True fake: scaffold gap size wrong estimation (local) 16005428 16014439 59819 50688 CM091757.1 scaffold250 98.28 True CONTIG scaffold250 59819 correct 3066012 3068106 1 2097 CM091752.1 scaffold251 99.67 True CONTIG scaffold251 2097 correct 15727846 15728692 847 1 CM091757.1 scaffold252 99.89 True relocation, inconsistency = 23651 15703142 15704194 1900 848 CM091757.1 scaffold252 99.81 True fake: scaffold gap size wrong estimation (local) 15701702 15703393 3842 2151 CM091757.1 scaffold252 99.94 True fake: scaffold gap size wrong estimation (local) 15695151 15700832 10249 4562 CM091757.1 scaffold252 99.98 True fake: scaffold gap size wrong estimation (local) 15691720 15694464 14084 11341 CM091757.1 scaffold252 99.96 True fake: scaffold gap size wrong estimation (local) 15689511 15691215 16524 14809 CM091757.1 scaffold252 98.89 True local misassembly 15689215 15690230 17540 16525 CM091757.1 scaffold252 99.8 True CONTIG scaffold252 17540 misassembled CONTIG scaffold253 610 unaligned 8918492 8927169 9091 1 CM091767.1 scaffold254 95.37 True indel: indel (> 5bp) 8915773 8918432 11873 9197 CM091767.1 scaffold254 99.14 True CONTIG scaffold254 12013 correct 8812059 8818638 1 6615 CM091767.1 scaffold255 99.32 True local misassembly 8819142 8820832 7571 9261 CM091767.1 scaffold255 99.82 True indel: indel (> 5bp) 8821263 8822035 9744 10516 CM091767.1 scaffold255 97.93 True local misassembly 8822036 8822960 10867 11791 CM091767.1 scaffold255 100.0 True indel: indel (<= 5bp) 8822961 8823550 11793 12382 CM091767.1 scaffold255 100.0 True indel: indel (> 5bp) 8823765 8855211 12629 44394 CM091767.1 scaffold255 98.84 True fake: scaffold gap size wrong estimation (local) 8855390 8864189 44668 53491 CM091767.1 scaffold255 99.49 True CONTIG scaffold255 53491 correct CONTIG scaffold249 4048 unaligned 11198879 11200678 1800 1 CM091765.1 scaffold245 99.94 True fake: scaffold gap size wrong estimation (local) 11197878 11198416 3795 3257 CM091765.1 scaffold245 99.81 True indel: indel (> 5bp) 11196955 11197827 4753 3871 CM091765.1 scaffold245 100.0 True fake: scaffold gap size wrong estimation (local) 11173335 11196420 29025 5676 CM091765.1 scaffold245 98.91 True fake: scaffold gap size wrong estimation (local) 11167685 11173184 34728 29174 CM091765.1 scaffold245 98.56 True fake: scaffold gap size wrong estimation (local) 11158617 11165263 42938 36256 CM091765.1 scaffold245 99.43 True indel: indel (> 5bp) 11151273 11158408 50322 43159 CM091765.1 scaffold245 97.8 True fake: scaffold gap size wrong estimation (local) 11128290 11149294 74963 53442 CM091765.1 scaffold245 96.11 True fake: scaffold gap size wrong estimation (local) 11118586 11128078 85036 75540 CM091765.1 scaffold245 99.91 True local misassembly 11110245 11118251 93475 85469 CM091765.1 scaffold245 99.91 True local misassembly 11108019 11109444 96175 94750 CM091765.1 scaffold245 96.14 True local misassembly 11105959 11107216 98301 97044 CM091765.1 scaffold245 99.6 True local misassembly 11105056 11105651 98897 98302 CM091765.1 scaffold245 99.83 True CONTIG scaffold245 101329 correct 20085533 20095749 10460 1 CM091751.1 scaffold256 96.52 True local misassembly 20083505 20085197 13102 10891 CM091751.1 scaffold256 95.24 True indel: stretch of mismatches 20063609 20083460 33008 13147 CM091751.1 scaffold256 98.21 True fake: scaffold gap size wrong estimation (local) 20055539 20063506 41197 33238 CM091751.1 scaffold256 98.96 True indel: indel (> 5bp) 20030358 20055434 66486 41325 CM091751.1 scaffold256 98.64 True indel: indel (> 5bp) 20026897 20030245 69956 66608 CM091751.1 scaffold256 99.11 True indel: indel (> 5bp) 20013652 20026783 83193 70062 CM091751.1 scaffold256 99.07 True local misassembly 20009261 20013170 87578 83697 CM091751.1 scaffold256 98.9 True fake: scaffold gap size wrong estimation (local) 19998320 20009219 99682 88781 CM091751.1 scaffold256 99.22 True indel: indel (> 5bp) 19979593 19998270 118679 99779 CM091751.1 scaffold256 97.09 True indel: indel (> 5bp) 19969595 19979461 128994 118833 CM091751.1 scaffold256 95.22 True indel: indel (> 5bp) 19965194 19969337 133422 129265 CM091751.1 scaffold256 98.22 True local misassembly 19961845 19966102 137663 133423 CM091751.1 scaffold256 97.89 True indel: indel (> 5bp) 19959184 19961750 140356 137778 CM091751.1 scaffold256 98.49 True local misassembly 19955829 19958990 143567 140405 CM091751.1 scaffold256 99.68 True CONTIG scaffold256 143567 correct 6347092 6358553 1 11585 CM091768.1 scaffold259 98.93 True fake: not a misassembly (possible transposable element) 12125286 12126104 11586 12406 CM091759.1 scaffold259 98.73 True fake: not a misassembly (possible transposable element) 6358866 6360808 12407 14349 CM091768.1 scaffold259 99.95 True CONTIG scaffold259 14349 correct 10660508 10745894 1 86772 CM091760.1 scaffold226 99.25 True local misassembly 10744359 10933667 86773 278685 CM091760.1 scaffold226 98.92 True indel: indel (> 5bp) 10933693 11126871 278733 478117 CM091760.1 scaffold226 99.18 True local misassembly 11125731 11225411 478135 582464 CM091760.1 scaffold226 98.15 True indel: indel (> 5bp) 11225635 11263291 582715 621709 CM091760.1 scaffold226 98.64 True fake: not a misassembly (possible transposable element) 3901680 3902507 622580 621753 CM091754.1 scaffold226 100.0 True fake: not a misassembly (possible transposable element) 11263100 11308724 622581 668958 CM091760.1 scaffold226 99.26 True indel: indel (<= 5bp) 11308810 11511492 669046 873408 CM091760.1 scaffold226 99.27 True indel: indel (> 5bp) 11511628 11646544 873524 1012802 CM091760.1 scaffold226 99.43 True local misassembly 11646586 11655358 1013409 1022177 CM091760.1 scaffold226 99.74 True local misassembly 11654374 11692122 1022181 1062852 CM091760.1 scaffold226 99.49 True indel: indel (> 5bp) 11692292 12022204 1063008 1400997 CM091760.1 scaffold226 99.13 True fake: scaffold gap size wrong estimation (local) 12023259 12023797 1401908 1402446 CM091760.1 scaffold226 99.81 True fake: scaffold gap size wrong estimation (local) 12024229 12065392 1402942 1444761 CM091760.1 scaffold226 99.36 True fake: scaffold gap size wrong estimation (local) 12065627 12083488 1444977 1463724 CM091760.1 scaffold226 97.99 True fake: scaffold gap size wrong estimation (local) 12083858 12142971 1464292 1524437 CM091760.1 scaffold226 98.18 True local misassembly 12143156 12171750 1524826 1554174 CM091760.1 scaffold226 99.04 True indel: indel (> 5bp) 12171863 12348973 1554255 1734864 CM091760.1 scaffold226 99.22 True indel: indel (> 5bp) 12349051 12484166 1734886 1871027 CM091760.1 scaffold226 99.15 True inversion 12484150 12484959 1871837 1871028 CM091760.1 scaffold226 99.4 True relocation, inconsistency = -83873 12483959 12568022 1871838 1957560 CM091760.1 scaffold226 98.72 True indel: indel (> 5bp) 12568090 12696539 1957635 2088193 CM091760.1 scaffold226 98.52 True fake: scaffold gap size wrong estimation (local) 12697093 12742960 2089308 2135541 CM091760.1 scaffold226 99.11 True indel: indel (> 5bp) 12743010 12758352 2135600 2150935 CM091760.1 scaffold226 99.19 True indel: indel (> 5bp) 12758412 12762145 2150940 2154745 CM091760.1 scaffold226 97.79 True CONTIG scaffold226 2154745 misassembled 15996665 16005056 8412 1 CM091757.1 scaffold261 99.8 True local misassembly 15998071 15998619 8972 8422 CM091757.1 scaffold261 99.64 True fake: scaffold gap size wrong estimation (local) 15988030 15996418 18545 10052 CM091757.1 scaffold261 99.5 True fake: scaffold gap size wrong estimation (local) 15974064 15987488 33061 19304 CM091757.1 scaffold261 99.72 True CONTIG scaffold261 33061 correct 4455158 4456415 1651 373 CM091754.1 scaffold262 96.48 True CONTIG scaffold262 1651 correct 16700847 16701447 1 601 CM091752.1 scaffold263 100.0 True fake: scaffold gap size wrong estimation (local) 16701879 16706351 1523 6001 CM091752.1 scaffold263 99.06 True local misassembly 16705155 16707446 6002 8314 CM091752.1 scaffold263 99.06 True fake: scaffold gap size wrong estimation (local) 16707771 16708570 8996 9788 CM091752.1 scaffold263 98.5 True CONTIG scaffold263 9788 correct 17830345 17831217 1118 254 CM091751.1 scaffold260 98.51 True local misassembly 17794883 17831217 37436 1165 CM091751.1 scaffold260 99.58 True local misassembly 17791658 17794601 40420 37482 CM091751.1 scaffold260 99.73 True indel: indel (> 5bp) 17691519 17791551 140914 40549 CM091751.1 scaffold260 99.48 True fake: scaffold gap size wrong estimation (local) 17668757 17690800 165328 142721 CM091751.1 scaffold260 99.22 True CONTIG scaffold260 165328 correct 6346019 6348503 975 3459 CM091768.1 scaffold264 99.72 True CONTIG scaffold264 4578 correct 5124419 5125231 812 1 CM091752.1 scaffold265 98.77 True CONTIG scaffold265 812 correct CONTIG scaffold267 634 unaligned 2189770 2193957 1 4175 CM091754.1 scaffold266 99.45 True indel: indel (> 5bp) 2194082 2207704 4316 17893 CM091754.1 scaffold266 99.21 True indel: indel (> 5bp) 2207755 2311816 17922 121547 CM091754.1 scaffold266 98.04 True indel: indel (> 5bp) 2311845 2348846 121569 157872 CM091754.1 scaffold266 96.51 True fake: scaffold gap size wrong estimation (local) 2349004 2352790 158682 162463 CM091754.1 scaffold266 99.37 True indel: indel (> 5bp) 2352819 2393339 162525 203128 CM091754.1 scaffold266 98.4 True CONTIG scaffold266 203180 correct 3654060 3657076 32429 29402 CM091764.1 scaffold176 98.65 True fake: scaffold gap size wrong estimation (local) 3624006 3651237 62944 35713 CM091764.1 scaffold176 99.69 True local misassembly 3579027 3623771 108398 63013 CM091764.1 scaffold176 99.66 True fake: scaffold gap size wrong estimation (local) 3555786 3578927 132990 108866 CM091764.1 scaffold176 98.23 True indel: indel (> 5bp) 3482773 3555752 209457 133048 CM091764.1 scaffold176 99.22 True fake: scaffold gap size wrong estimation (local) 3414444 3482263 278776 210191 CM091764.1 scaffold176 99.46 True fake: scaffold gap size wrong estimation (local) 3345393 3414459 350756 279375 CM091764.1 scaffold176 99.58 True indel: indel (> 5bp) 3323575 3345357 374433 350825 CM091764.1 scaffold176 97.44 True fake: scaffold gap size wrong estimation (local) 3285644 3322783 414342 375263 CM091764.1 scaffold176 99.84 True fake: scaffold gap size wrong estimation (local) 3201354 3285131 499207 415233 CM091764.1 scaffold176 99.56 True indel: indel (> 5bp) 2835290 3201282 864923 499293 CM091764.1 scaffold176 98.11 True indel: indel (<= 5bp) 2757413 2835212 943963 865005 CM091764.1 scaffold176 99.38 True local misassembly 2692526 2756663 1010907 945049 CM091764.1 scaffold176 99.61 True fake: scaffold gap size wrong estimation (local) 2690823 2692415 1013406 1011814 CM091764.1 scaffold176 99.94 True local misassembly 2677322 2690247 1026914 1013974 CM091764.1 scaffold176 99.39 True local misassembly 2676078 2676706 1028208 1027580 CM091764.1 scaffold176 99.21 True fake: scaffold gap size wrong estimation (local) 2675427 2676077 1028879 1028229 CM091764.1 scaffold176 99.69 True local misassembly 2663665 2670348 1035953 1029270 CM091764.1 scaffold176 99.88 True indel: indel (> 5bp) 2662277 2663613 1037290 1035954 CM091764.1 scaffold176 99.7 True indel: indel (> 5bp) 2661038 2662276 1038539 1037301 CM091764.1 scaffold176 99.76 True indel: indel (<= 5bp) 2659075 2661031 1040498 1038542 CM091764.1 scaffold176 99.95 True indel: indel (> 5bp) 2657176 2659059 1042382 1040499 CM091764.1 scaffold176 99.89 True indel: indel (<= 5bp) 2655649 2657175 1043910 1042384 CM091764.1 scaffold176 99.8 True indel: indel (<= 5bp) 2655106 2655647 1044452 1043911 CM091764.1 scaffold176 100.0 True indel: indel (<= 5bp) 2641021 2655105 1058538 1044454 CM091764.1 scaffold176 99.94 True indel: indel (<= 5bp) 2636812 2640765 1062743 1058790 CM091764.1 scaffold176 99.9 True indel: indel (<= 5bp) 2635752 2636811 1063804 1062745 CM091764.1 scaffold176 100.0 True indel: indel (<= 5bp) 2634618 2635495 1064940 1064063 CM091764.1 scaffold176 99.89 True indel: indel (<= 5bp) 2633399 2634617 1066160 1064942 CM091764.1 scaffold176 99.92 True indel: indel (<= 5bp) 2631858 2633398 1067703 1066163 CM091764.1 scaffold176 99.87 True indel: indel (> 5bp) 2630162 2631632 1069413 1067943 CM091764.1 scaffold176 99.52 True indel: indel (<= 5bp) 2629628 2630160 1069946 1069414 CM091764.1 scaffold176 99.62 True indel: indel (<= 5bp) 2628090 2629626 1071483 1069947 CM091764.1 scaffold176 99.93 True indel: indel (<= 5bp) 2625955 2628089 1073620 1071486 CM091764.1 scaffold176 99.72 True indel: indel (<= 5bp) 2623053 2625954 1076527 1073626 CM091764.1 scaffold176 99.97 True indel: indel (<= 5bp) 2618994 2623051 1080585 1076528 CM091764.1 scaffold176 99.95 True indel: indel (<= 5bp) 2618008 2618993 1081572 1080587 CM091764.1 scaffold176 100.0 True indel: indel (<= 5bp) 2616486 2618007 1083097 1081576 CM091764.1 scaffold176 100.0 True local misassembly 2613243 2615490 1086350 1084103 CM091764.1 scaffold176 100.0 True indel: indel (<= 5bp) 2607353 2613242 1092241 1086352 CM091764.1 scaffold176 99.9 True indel: indel (> 5bp) 2605836 2607303 1093773 1092306 CM091764.1 scaffold176 99.66 True fake: scaffold gap size wrong estimation (local) 2603903 2605679 1096457 1094681 CM091764.1 scaffold176 99.89 True indel: indel (<= 5bp) 2602842 2603901 1097517 1096458 CM091764.1 scaffold176 99.91 True indel: indel (<= 5bp) 2599899 2602841 1100464 1097522 CM091764.1 scaffold176 100.0 True indel: indel (<= 5bp) 2598155 2599898 1102209 1100466 CM091764.1 scaffold176 100.0 True fake: scaffold gap size wrong estimation (local) 2597077 2598154 1103620 1102543 CM091764.1 scaffold176 100.0 True indel: indel (<= 5bp) 2594166 2597076 1106533 1103623 CM091764.1 scaffold176 99.97 True indel: indel (<= 5bp) 2592420 2594165 1108280 1106535 CM091764.1 scaffold176 100.0 True indel: indel (<= 5bp) 2587575 2592418 1113124 1108281 CM091764.1 scaffold176 99.9 True indel: indel (<= 5bp) 2586626 2587573 1114072 1113125 CM091764.1 scaffold176 99.79 True indel: indel (> 5bp) 2583022 2586619 1117670 1114073 CM091764.1 scaffold176 99.97 True indel: indel (> 5bp) 2547766 2582548 1153447 1118154 CM091764.1 scaffold176 99.74 True indel: stretch of mismatches 2503646 2547712 1197035 1153501 CM091764.1 scaffold176 97.41 True fake: scaffold gap size wrong estimation (local) 2370743 2503445 1334035 1197586 CM091764.1 scaffold176 98.94 True fake: scaffold gap size wrong estimation (local) 2357752 2369833 1347240 1335149 CM091764.1 scaffold176 99.74 True CONTIG scaffold176 1347240 correct CONTIG scaffold268 4274 unaligned 11649620 11650909 2166 3457 CM091761.1 scaffold237 99.69 True fake: scaffold gap size wrong estimation (local) 11651071 11651692 3711 4332 CM091761.1 scaffold237 99.04 True local misassembly 11651982 11755956 4729 109590 CM091761.1 scaffold237 99.78 True fake: scaffold gap size wrong estimation (local) 11756219 11763735 110531 118077 CM091761.1 scaffold237 99.39 True fake: scaffold gap size wrong estimation (local) 11763845 11882524 118225 238327 CM091761.1 scaffold237 98.76 True fake: scaffold gap size wrong estimation (local) 11882709 12037184 238979 396309 CM091761.1 scaffold237 98.65 True local misassembly 12037301 12228759 396965 594588 CM091761.1 scaffold237 98.89 True fake: scaffold gap size wrong estimation (local) 12228896 12255306 594979 621448 CM091761.1 scaffold237 98.97 True fake: scaffold gap size wrong estimation (local) 12255471 12312007 622230 680312 CM091761.1 scaffold237 99.25 True fake: not a misassembly (possible transposable element) 15546435 15547111 680313 680995 CM091755.1 scaffold237 98.68 True fake: not a misassembly (possible transposable element) 12312037 12312969 680997 681929 CM091761.1 scaffold237 99.68 True CONTIG scaffold237 681974 correct 16494320 16495363 1114 68 CM091752.1 scaffold272 98.76 True relocation, scaffold gap is present, inconsistency = 368089 16122463 16123939 4882 3406 CM091752.1 scaffold272 99.66 True CONTIG scaffold272 6377 misassembled 3481408 3566922 1 85997 CM091752.1 scaffold270 99.5 True fake: scaffold gap size wrong estimation (local) 3567548 3584003 86632 103111 CM091752.1 scaffold270 99.33 True local misassembly 3584494 3591088 103112 110019 CM091752.1 scaffold270 95.16 True indel: indel (> 5bp) 3591316 3685597 110270 205519 CM091752.1 scaffold270 98.57 True fake: scaffold gap size wrong estimation (local) 3685598 3724502 206378 245843 CM091752.1 scaffold270 97.46 True fake: scaffold gap size wrong estimation (local) 3724267 3746353 246202 267679 CM091752.1 scaffold270 96.63 True CONTIG scaffold270 267679 correct CONTIG scaffold274 940 unaligned 3173289 3205914 5333 37936 CM091761.1 scaffold273 99.58 True fake: scaffold gap size wrong estimation (local) 3206090 3239135 38113 71411 CM091761.1 scaffold273 97.91 True fake: scaffold gap size wrong estimation (local) 3239577 3431289 72813 271779 CM091761.1 scaffold273 99.09 True fake: scaffold gap size wrong estimation (local) 3431389 3432994 271923 273529 CM091761.1 scaffold273 98.69 True indel: indel (> 5bp) 3433211 3457090 273789 298001 CM091761.1 scaffold273 99.29 True indel: indel (> 5bp) 3457153 3688453 298074 532021 CM091761.1 scaffold273 99.11 True local misassembly 3687894 3704518 532268 548878 CM091761.1 scaffold273 99.04 True indel: indel (> 5bp) 3704546 3706639 548927 551060 CM091761.1 scaffold273 97.14 True indel: indel (> 5bp) 3706667 3739412 551099 583877 CM091761.1 scaffold273 98.85 True fake: scaffold gap size wrong estimation (local) 3739172 3744403 584401 589617 CM091761.1 scaffold273 98.61 True fake: scaffold gap size wrong estimation (local) 3744756 3765314 589875 610393 CM091761.1 scaffold273 98.97 True indel: indel (> 5bp) 3765400 3833777 610448 678720 CM091761.1 scaffold273 97.72 True indel: indel (> 5bp) 3833863 3844440 678755 689085 CM091761.1 scaffold273 96.9 True fake: scaffold gap size wrong estimation (local) 3844547 3873648 689908 719329 CM091761.1 scaffold273 97.96 True local misassembly 3873727 3880033 719521 725826 CM091761.1 scaffold273 98.78 True local misassembly 3879157 3903868 725827 750375 CM091761.1 scaffold273 97.8 True fake: scaffold gap size wrong estimation (local) 3903881 3999945 750927 847882 CM091761.1 scaffold273 98.94 True local misassembly 4000163 4052987 848226 900379 CM091761.1 scaffold273 97.87 True local misassembly 4053806 4054718 901603 902515 CM091761.1 scaffold273 99.34 True indel: indel (<= 5bp) 4054719 4055635 902517 903433 CM091761.1 scaffold273 99.45 True indel: stretch of mismatches 4055949 4056537 903747 904335 CM091761.1 scaffold273 98.81 True local misassembly 4056826 4057360 904476 905010 CM091761.1 scaffold273 98.13 True local misassembly 4057361 4058082 905444 906165 CM091761.1 scaffold273 99.03 True indel: indel (> 5bp) 4058083 4058689 906172 906778 CM091761.1 scaffold273 99.18 True indel: indel (<= 5bp) 4058692 4059444 906779 907531 CM091761.1 scaffold273 99.34 True indel: indel (<= 5bp) 4059897 4060810 907988 908901 CM091761.1 scaffold273 99.34 True indel: indel (<= 5bp) 4060811 4061428 908903 909520 CM091761.1 scaffold273 99.68 True local misassembly 4062327 4063614 910415 911702 CM091761.1 scaffold273 99.61 True indel: indel (<= 5bp) 4063959 4065745 912044 913830 CM091761.1 scaffold273 99.22 True local misassembly 4065969 4066634 914217 914882 CM091761.1 scaffold273 98.5 True fake: scaffold gap size wrong estimation (local) 4068011 4069365 916771 918125 CM091761.1 scaffold273 99.63 True indel: indel (<= 5bp) 4069367 4070761 918126 919520 CM091761.1 scaffold273 99.21 True indel: indel (<= 5bp) 4070762 4072450 919522 921210 CM091761.1 scaffold273 99.17 True indel: indel (<= 5bp) 4072451 4073289 921212 922050 CM091761.1 scaffold273 99.28 True relocation, inconsistency = 27166 4101434 4137810 923029 958670 CM091761.1 scaffold273 96.82 True fake: scaffold gap size wrong estimation (local) 4137930 4301798 959099 1124614 CM091761.1 scaffold273 99.32 True indel: indel (<= 5bp) 4301923 4402152 1124744 1225769 CM091761.1 scaffold273 98.63 True relocation, inconsistency = 217214 4619405 4620101 1225808 1226504 CM091761.1 scaffold273 99.86 True inversion 4612017 4619179 1234253 1226505 CM091761.1 scaffold273 99.18 True indel: indel (> 5bp) 4562461 4611947 1284477 1234332 CM091761.1 scaffold273 99.26 True indel: indel (> 5bp) 4561658 4562428 1285289 1284519 CM091761.1 scaffold273 99.61 True indel: indel (> 5bp) 4560574 4561177 1286382 1285779 CM091761.1 scaffold273 99.17 True local misassembly 4559408 4559923 1287546 1287031 CM091761.1 scaffold273 99.42 True local misassembly 4558018 4558896 1288942 1288064 CM091761.1 scaffold273 99.77 True indel: indel (> 5bp) 4556102 4557998 1290839 1288943 CM091761.1 scaffold273 99.74 True indel: indel (<= 5bp) 4553665 4555904 1293274 1291035 CM091761.1 scaffold273 99.2 True local misassembly 4550304 4552354 1295787 1293737 CM091761.1 scaffold273 99.46 True indel: indel (<= 5bp) 4549737 4550244 1296356 1295849 CM091761.1 scaffold273 100.0 True indel: indel (<= 5bp) 4549160 4549736 1296934 1296358 CM091761.1 scaffold273 99.65 True CONTIG scaffold273 1297374 misassembled 5449988 5465235 46 15303 CM091757.1 scaffold234 99.59 True local misassembly 5464144 5644537 15304 198577 CM091757.1 scaffold234 99.29 True fake: scaffold gap size wrong estimation (local) 5644644 5716813 199096 272439 CM091757.1 scaffold234 98.5 True indel: indel (<= 5bp) 5716913 5751999 272538 307635 CM091757.1 scaffold234 99.56 True indel: indel (> 5bp) 5752209 5762196 307881 317888 CM091757.1 scaffold234 99.2 True indel: indel (> 5bp) 5762225 5769861 317972 325608 CM091757.1 scaffold234 99.75 True fake: scaffold gap size wrong estimation (local) 5770003 5854820 326670 413998 CM091757.1 scaffold234 98.68 True fake: scaffold gap size wrong estimation (local) 5854924 5979901 414212 540703 CM091757.1 scaffold234 99.13 True fake: scaffold gap size wrong estimation (local) 5980679 5995069 541391 555776 CM091757.1 scaffold234 99.47 True local misassembly 5995292 6055442 556393 617200 CM091757.1 scaffold234 99.07 True fake: scaffold gap size wrong estimation (local) 6055624 6067920 618083 630391 CM091757.1 scaffold234 99.46 True fake: scaffold gap size wrong estimation (local) 6067745 6136306 631061 704164 CM091757.1 scaffold234 98.71 True local misassembly 6135257 6243050 704165 813744 CM091757.1 scaffold234 99.45 True local misassembly 6243123 6354007 814227 925869 CM091757.1 scaffold234 98.99 True local misassembly 6354856 6467187 926667 1039456 CM091757.1 scaffold234 99.7 True local misassembly 6468087 6482339 1040839 1055175 CM091757.1 scaffold234 98.37 True indel: indel (> 5bp) 6482627 6564556 1055494 1138932 CM091757.1 scaffold234 98.72 True indel: indel (> 5bp) 6564582 6577000 1138967 1151572 CM091757.1 scaffold234 99.09 True local misassembly 6578837 6581454 1152872 1155489 CM091757.1 scaffold234 99.58 True local misassembly 6583073 6583837 1157117 1157881 CM091757.1 scaffold234 99.74 True fake: scaffold gap size wrong estimation (local) 6584076 6630545 1158121 1205680 CM091757.1 scaffold234 98.29 True indel: indel (> 5bp) 6630600 6651010 1205751 1226211 CM091757.1 scaffold234 99.0 True indel: indel (> 5bp) 6651032 6677973 1226243 1253786 CM091757.1 scaffold234 98.93 True indel: indel (> 5bp) 6678013 6728107 1253850 1304054 CM091757.1 scaffold234 99.12 True fake: scaffold gap size wrong estimation (local) 6728362 6798892 1304993 1375488 CM091757.1 scaffold234 99.34 True local misassembly 6799164 6829927 1375985 1406841 CM091757.1 scaffold234 99.1 True local misassembly 6829950 6884650 1407354 1462633 CM091757.1 scaffold234 98.93 True indel: indel (> 5bp) 6884688 7006009 1462737 1584365 CM091757.1 scaffold234 99.13 True CONTIG scaffold234 1584682 correct 11480260 11484044 3786 1 CM091765.1 scaffold277 99.92 True fake: scaffold gap size wrong estimation (local) 11476329 11479973 8199 4526 CM091765.1 scaffold277 99.02 True fake: scaffold gap size wrong estimation (local) 11471561 11476086 13792 8728 CM091765.1 scaffold277 98.48 True fake: scaffold gap size wrong estimation (local) 11470327 11473081 17547 14039 CM091765.1 scaffold277 99.6 True indel: indel (> 5bp) 11465375 11470245 22585 17656 CM091765.1 scaffold277 98.76 True CONTIG scaffold277 22585 correct 6411851 6412545 768 81 CM091768.1 scaffold278 95.4 True unknown 9475337 9476063 5749 5023 CM091755.1 scaffold278 99.59 True unknown CONTIG scaffold278 25380 mis_unaligned CONTIG scaffold279 2973 unaligned CONTIG scaffold280 396 unaligned 6848211 6892038 49 45549 CM091763.1 scaffold275 99.54 True indel: indel (> 5bp) 6892085 6926833 45605 80360 CM091763.1 scaffold275 99.7 True local misassembly 6927866 6929284 81344 82767 CM091763.1 scaffold275 99.3 True fake: scaffold gap size wrong estimation (local) 6929548 6936734 83552 90719 CM091763.1 scaffold275 99.54 True fake: scaffold gap size wrong estimation (local) 6937018 6943506 90994 97516 CM091763.1 scaffold275 99.47 True fake: scaffold gap size wrong estimation (local) 6943608 7016554 98461 176917 CM091763.1 scaffold275 99.24 True fake: scaffold gap size wrong estimation (local) 7016657 7137439 177043 303165 CM091763.1 scaffold275 98.84 True CONTIG scaffold275 303179 correct 19479388 19490915 11646 1 CM091751.1 scaffold282 97.8 True indel: indel (> 5bp) 19464025 19479331 27079 11723 CM091751.1 scaffold282 98.75 True fake: scaffold gap size wrong estimation (local) 19439892 19463731 51893 27949 CM091751.1 scaffold282 97.72 True local misassembly 19425726 19439625 66322 52547 CM091751.1 scaffold282 97.24 True CONTIG scaffold282 66772 correct CONTIG scaffold281 2501 unaligned 4343218 4344063 1 858 CM091754.1 scaffold284 99.38 True CONTIG scaffold284 858 correct 76352 103656 1 27390 CM091751.1 scaffold283 99.35 True indel: indel (> 5bp) 103861 106290 27628 30057 CM091751.1 scaffold283 100.0 True indel: indel (<= 5bp) 106291 110148 30059 33916 CM091751.1 scaffold283 99.92 True indel: indel (<= 5bp) 110201 113919 33965 37683 CM091751.1 scaffold283 99.95 True local misassembly 119535 120890 37684 39039 CM091751.1 scaffold283 100.0 True local misassembly 120891 127270 39494 45873 CM091751.1 scaffold283 100.0 True indel: indel (<= 5bp) 127272 133777 45874 52379 CM091751.1 scaffold283 99.92 True fake: scaffold gap size wrong estimation (local) 133778 139683 52853 58758 CM091751.1 scaffold283 99.32 True indel: indel (<= 5bp) 139686 143431 58759 62504 CM091751.1 scaffold283 99.89 True indel: stretch of mismatches 143730 144311 62803 63384 CM091751.1 scaffold283 99.48 True fake: scaffold gap size wrong estimation (local) 144312 147054 63890 66632 CM091751.1 scaffold283 99.82 True fake: scaffold gap size wrong estimation (local) 147055 148707 66961 68613 CM091751.1 scaffold283 99.52 True indel: indel (<= 5bp) 148708 153000 68615 72907 CM091751.1 scaffold283 99.95 True indel: indel (<= 5bp) 153001 154335 72911 74245 CM091751.1 scaffold283 99.85 True fake: scaffold gap size wrong estimation (local) 154336 156957 74261 76882 CM091751.1 scaffold283 99.92 True fake: scaffold gap size wrong estimation (local) 157205 194381 78066 115975 CM091751.1 scaffold283 99.55 True CONTIG scaffold283 115979 correct 67647 68294 368 1015 CM091764.1 scaffold286 99.07 True fake: scaffold gap size wrong estimation (local) 68471 71511 2451 5582 CM091764.1 scaffold286 96.01 True indel: indel (> 5bp) 71687 72803 5784 6900 CM091764.1 scaffold286 100.0 True CONTIG scaffold286 6900 correct 4466584 4467704 1 1119 CM091754.1 scaffold287 99.73 True CONTIG scaffold287 1119 correct 160500 161283 1 784 CM091763.1 scaffold288 99.87 True CONTIG scaffold288 784 correct 14200029 14234603 35505 1 CM091758.1 scaffold276 97.62 True fake: scaffold gap size wrong estimation (local) 14193322 14199502 42619 36434 CM091758.1 scaffold276 99.45 True indel: indel (> 5bp) 14190255 14193122 45644 42779 CM091758.1 scaffold276 99.44 True indel: indel (> 5bp) 14184909 14190010 50985 45859 CM091758.1 scaffold276 98.35 True fake: scaffold gap size wrong estimation (local) 14128581 14184167 108521 52526 CM091758.1 scaffold276 98.07 True local misassembly 14124845 14127641 111616 108840 CM091758.1 scaffold276 98.22 True indel: indel (> 5bp) 14111126 14124623 125283 111818 CM091758.1 scaffold276 97.82 True local misassembly 14092345 14111092 143761 125468 CM091758.1 scaffold276 96.56 True local misassembly 14059397 14093268 178338 143762 CM091758.1 scaffold276 98.87 True indel: indel (<= 5bp) 14058363 14059327 179376 178412 CM091758.1 scaffold276 99.38 True indel: indel (<= 5bp) 14057678 14058341 180063 179400 CM091758.1 scaffold276 99.7 True local misassembly 14054780 14057074 182962 180668 CM091758.1 scaffold276 99.74 True indel: indel (<= 5bp) 14053318 14054778 184423 182963 CM091758.1 scaffold276 99.52 True local misassembly 14052180 14052789 186012 185403 CM091758.1 scaffold276 99.34 True indel: indel (> 5bp) 14050852 14052173 187334 186013 CM091758.1 scaffold276 99.7 True indel: indel (<= 5bp) 14047448 14050848 190735 187335 CM091758.1 scaffold276 99.26 True local misassembly 14042706 14043736 191766 190736 CM091758.1 scaffold276 99.61 True indel: indel (> 5bp) 14040967 14042705 193512 191774 CM091758.1 scaffold276 99.65 True indel: indel (<= 5bp) 14040353 14040966 194127 193514 CM091758.1 scaffold276 99.51 True fake: scaffold gap size wrong estimation (local) 14039652 14040264 196017 195392 CM091758.1 scaffold276 95.85 True indel: indel (> 5bp) 14036229 14039225 199516 196466 CM091758.1 scaffold276 97.87 True indel: indel (<= 5bp) 14028553 14036077 206984 199670 CM091758.1 scaffold276 95.85 True indel: indel (> 5bp) 14023753 14028487 211864 207080 CM091758.1 scaffold276 97.85 True indel: indel (<= 5bp) 14017790 14023565 217828 212056 CM091758.1 scaffold276 98.74 True local misassembly 14008070 14016967 227088 218150 CM091758.1 scaffold276 98.83 True indel: indel (> 5bp) 13985677 14007926 249464 227248 CM091758.1 scaffold276 98.79 True fake: scaffold gap size wrong estimation (local) 13984696 13985656 251869 250898 CM091758.1 scaffold276 95.43 True local misassembly 13930824 13978848 300238 251870 CM091758.1 scaffold276 98.38 True fake: scaffold gap size wrong estimation (local) 13908690 13930552 322952 300755 CM091758.1 scaffold276 97.7 True indel: indel (> 5bp) 13890044 13908613 341662 323015 CM091758.1 scaffold276 98.99 True local misassembly 13806731 13889834 425640 341980 CM091758.1 scaffold276 98.86 True local misassembly 13776196 13808156 457995 426030 CM091758.1 scaffold276 99.73 True CONTIG scaffold276 457995 correct 20114667 20199354 87267 1 CM091751.1 scaffold289 96.0 True indel: indel (<= 5bp) 20095988 20114640 105952 87298 CM091751.1 scaffold289 98.34 True CONTIG scaffold289 105955 correct CONTIG scaffold291 448 unaligned 13330571 13399529 70576 1 CM091759.1 scaffold269 97.74 True indel: indel (> 5bp) 13329504 13330414 71683 70770 CM091759.1 scaffold269 98.8 True indel: indel (> 5bp) 13328239 13329463 72919 71711 CM091759.1 scaffold269 97.88 True indel: indel (> 5bp) 13310184 13328076 91186 73060 CM091759.1 scaffold269 99.09 True indel: indel (> 5bp) 13191534 13310056 212604 91330 CM091759.1 scaffold269 98.49 True local misassembly 13012335 13190926 397839 213434 CM091759.1 scaffold269 98.74 True local misassembly 12792774 13011457 626135 398740 CM091759.1 scaffold269 98.69 True local misassembly 12729004 12790894 688930 627709 CM091759.1 scaffold269 97.04 True local misassembly 12697857 12729903 720960 688934 CM091759.1 scaffold269 99.24 True fake: scaffold gap size wrong estimation (local) 12658977 12697335 760071 721737 CM091759.1 scaffold269 99.44 True CONTIG scaffold269 760071 correct 13459976 13467573 1 7589 CM091758.1 scaffold293 99.79 True CONTIG scaffold293 7589 correct 6898999 6970349 44 72054 CM091758.1 scaffold294 99.37 True local misassembly 6970387 7000978 72264 102829 CM091758.1 scaffold294 99.06 True local misassembly 7001082 7061035 103042 163680 CM091758.1 scaffold294 98.66 True local misassembly 7061055 7193565 164009 298225 CM091758.1 scaffold294 98.53 True CONTIG scaffold294 298225 correct 16224774 16227363 2590 1 CM091757.1 scaffold295 100.0 True CONTIG scaffold295 2590 correct 4333629 4335498 1870 1 CM091768.1 scaffold296 99.89 True fake: scaffold gap size wrong estimation (local) 4331181 4333875 5185 2466 CM091768.1 scaffold296 96.97 True fake: scaffold gap size wrong estimation (local) 4329331 4331189 8154 6297 CM091768.1 scaffold296 98.06 True local misassembly 4329331 4330270 9411 8473 CM091768.1 scaffold296 98.51 True relocation, inconsistency = 90558 4423005 4423772 11588 12355 CM091768.1 scaffold296 97.14 True CONTIG scaffold296 12409 misassembled CONTIG scaffold297 991 unaligned CONTIG scaffold298 670 unaligned 2745739 2747502 1869 3632 CM091755.1 scaffold299 99.83 True CONTIG scaffold299 10586 correct_unaligned CONTIG scaffold300 676 unaligned CONTIG scaffold301 392 unaligned 45842 47652 1925 99 JBEUIP010000019.1 scaffold290 97.65 True translocation 3400123 3402217 1926 4020 CM091752.1 scaffold290 99.81 True indel: indel (<= 5bp) 3402219 3404659 4021 6461 CM091752.1 scaffold290 99.8 True indel: indel (<= 5bp) 3404665 3406720 6462 8517 CM091752.1 scaffold290 99.85 True indel: indel (<= 5bp) 3406721 3407417 8519 9215 CM091752.1 scaffold290 99.57 True local misassembly 3411349 3412240 9326 10217 CM091752.1 scaffold290 100.0 True fake: scaffold gap size wrong estimation (local) 3412374 3414110 10343 12096 CM091752.1 scaffold290 98.75 True indel: indel (<= 5bp) 3414188 3423577 12178 21616 CM091752.1 scaffold290 99.13 True local misassembly 3424024 3427621 22765 26394 CM091752.1 scaffold290 99.64 True inversion 3432331 3432912 26976 26395 CM091752.1 scaffold290 99.73 True inversion 3438856 3455472 26977 44128 CM091752.1 scaffold290 96.31 True CONTIG scaffold290 44128 misassembled 4939516 4940496 1 1012 CM091768.1 scaffold303 95.28 True fake: scaffold gap size wrong estimation (local) 4942249 4943716 3002 4469 CM091768.1 scaffold303 99.86 True fake: scaffold gap size wrong estimation (local) 4945557 4946074 6741 7258 CM091768.1 scaffold303 99.42 True indel: indel (> 5bp) 4946075 4947770 7281 8976 CM091768.1 scaffold303 98.94 True fake: scaffold gap size wrong estimation (local) 4947990 4949223 9640 10873 CM091768.1 scaffold303 100.0 True CONTIG scaffold303 10873 correct CONTIG scaffold304 263 unaligned CONTIG scaffold305 565 unaligned 11550342 11551091 762 1 CM091765.1 scaffold306 99.59 True CONTIG scaffold306 762 correct 7697968 7698524 115 673 CM091767.1 scaffold307 97.15 True fake: scaffold gap size wrong estimation (local) 7698010 7703896 2543 8467 CM091767.1 scaffold307 99.04 True local misassembly 7705633 7732617 8494 36457 CM091767.1 scaffold307 98.64 True fake: scaffold gap size wrong estimation (local) 7732753 7738398 36612 42256 CM091767.1 scaffold307 99.95 True CONTIG scaffold307 42256 correct 4208633 4209305 1196 1868 CM091768.1 scaffold308 95.69 True unknown 4209308 4210633 1869 3194 CM091768.1 scaffold308 96.76 True unknown 4210634 4211317 3586 4269 CM091768.1 scaffold308 95.91 True unknown CONTIG scaffold308 5754 mis_unaligned 1949009 1953074 4069 1 CM091754.1 scaffold257 99.58 True local misassembly 1945546 1946956 5483 4071 CM091754.1 scaffold257 98.66 True local misassembly 1947924 1948691 6252 5484 CM091754.1 scaffold257 99.48 True local misassembly 1838429 1945892 114017 6253 CM091754.1 scaffold257 99.08 True indel: indel (> 5bp) 1750181 1838401 202532 114064 CM091754.1 scaffold257 98.89 True local misassembly 1729684 1750910 223843 202548 CM091754.1 scaffold257 99.24 True fake: scaffold gap size wrong estimation (local) 1728404 1729230 225803 224977 CM091754.1 scaffold257 100.0 True indel: indel (<= 5bp) 1725954 1728403 228254 225805 CM091754.1 scaffold257 99.8 True indel: indel (<= 5bp) 1725169 1725952 229038 228255 CM091754.1 scaffold257 99.49 True indel: indel (<= 5bp) 1723204 1725167 231002 229039 CM091754.1 scaffold257 99.49 True indel: indel (<= 5bp) 1722473 1723200 231730 231003 CM091754.1 scaffold257 99.45 True indel: stretch of mismatches 1719797 1722280 234406 231923 CM091754.1 scaffold257 99.6 True indel: indel (> 5bp) 1717742 1719796 236467 234413 CM091754.1 scaffold257 99.61 True indel: indel (> 5bp) 1716327 1717601 237889 236615 CM091754.1 scaffold257 99.69 True indel: indel (<= 5bp) 1715687 1716240 238530 237977 CM091754.1 scaffold257 99.64 True indel: indel (<= 5bp) 1713287 1715685 240929 238531 CM091754.1 scaffold257 99.71 True local misassembly 1705487 1708027 243470 240930 CM091754.1 scaffold257 99.84 True indel: indel (<= 5bp) 1704694 1705485 244262 243471 CM091754.1 scaffold257 99.75 True indel: indel (<= 5bp) 1702403 1704687 246558 244274 CM091754.1 scaffold257 99.43 True indel: indel (> 5bp) 1701382 1702043 247588 246927 CM091754.1 scaffold257 99.7 True indel: indel (> 5bp) 1700402 1701149 248574 247827 CM091754.1 scaffold257 100.0 True indel: indel (<= 5bp) 1699699 1700401 249278 248576 CM091754.1 scaffold257 99.43 True indel: indel (<= 5bp) 1699078 1699698 249900 249280 CM091754.1 scaffold257 99.68 True local misassembly 1697696 1698477 251283 250502 CM091754.1 scaffold257 99.49 True indel: indel (<= 5bp) 1696547 1697645 252437 251339 CM091754.1 scaffold257 99.45 True indel: indel (<= 5bp) 1695386 1696546 253599 252439 CM091754.1 scaffold257 99.22 True indel: indel (<= 5bp) 1694192 1695157 254788 253823 CM091754.1 scaffold257 99.59 True indel: indel (<= 5bp) 1692536 1694189 256442 254789 CM091754.1 scaffold257 99.4 True indel: indel (<= 5bp) 1691885 1692535 257094 256444 CM091754.1 scaffold257 99.85 True indel: indel (<= 5bp) 1687366 1691884 261616 257098 CM091754.1 scaffold257 99.69 True local misassembly 1684061 1685749 264918 263230 CM091754.1 scaffold257 99.47 True indel: indel (<= 5bp) 1683114 1684059 265864 264919 CM091754.1 scaffold257 99.68 True indel: stretch of mismatches 1682292 1683003 266686 265975 CM091754.1 scaffold257 99.3 True indel: indel (<= 5bp) 1680963 1682291 268016 266688 CM091754.1 scaffold257 99.7 True indel: indel (<= 5bp) 1680401 1680962 268580 268019 CM091754.1 scaffold257 99.64 True indel: indel (> 5bp) 1678756 1680400 270233 268589 CM091754.1 scaffold257 98.91 True indel: indel (> 5bp) 1677521 1678523 271460 270458 CM091754.1 scaffold257 99.5 True indel: indel (<= 5bp) 1675990 1677047 272987 271930 CM091754.1 scaffold257 99.43 True local misassembly 1674265 1675447 274708 273525 CM091754.1 scaffold257 99.49 True local misassembly 1625536 1675158 325566 274709 CM091754.1 scaffold257 98.29 True fake: not a misassembly (possible transposable element) 1842066 1843056 326585 325597 CM091752.1 scaffold257 99.6 True fake: not a misassembly (possible transposable element) 1621904 1625418 330107 326586 CM091754.1 scaffold257 99.32 True fake: scaffold gap size wrong estimation (local) 1609389 1622113 344067 331354 CM091754.1 scaffold257 98.95 True indel: indel (> 5bp) 1508712 1609222 445880 344167 CM091754.1 scaffold257 98.36 True indel: indel (> 5bp) 1465121 1508640 490228 445939 CM091754.1 scaffold257 97.01 True indel: indel (> 5bp) 1457758 1464937 497522 490345 CM091754.1 scaffold257 99.05 True fake: scaffold gap size wrong estimation (local) 1443764 1457601 512074 498242 CM091754.1 scaffold257 99.44 True fake: scaffold gap size wrong estimation (local) 1431410 1443681 525057 512795 CM091754.1 scaffold257 99.77 True indel: indel (<= 5bp) 1429533 1431331 526941 525133 CM091754.1 scaffold257 97.91 True indel: indel (> 5bp) 1428954 1429482 527531 527003 CM091754.1 scaffold257 100.0 True indel: indel (<= 5bp) 1427298 1428952 529186 527532 CM091754.1 scaffold257 99.58 True local misassembly 1422412 1424254 534076 532234 CM091754.1 scaffold257 99.24 True indel: indel (<= 5bp) 1421698 1422408 534794 534084 CM091754.1 scaffold257 99.86 True local misassembly 1419975 1421069 536511 535417 CM091754.1 scaffold257 99.73 True fake: scaffold gap size wrong estimation (local) 1418552 1419076 538551 538027 CM091754.1 scaffold257 99.81 True local misassembly 1416311 1417569 540407 539149 CM091754.1 scaffold257 99.52 True fake: scaffold gap size wrong estimation (local) 1397668 1413275 560654 544854 CM091754.1 scaffold257 96.23 True local misassembly 1364262 1396576 595010 561846 CM091754.1 scaffold257 95.82 True indel: indel (> 5bp) 1361853 1364118 597440 595172 CM091754.1 scaffold257 99.38 True fake: not a misassembly (possible transposable element) 1358839 1359761 597441 598365 CM091754.1 scaffold257 98.57 True fake: not a misassembly (possible transposable element) 1350086 1361709 609983 598377 CM091754.1 scaffold257 98.31 True fake: scaffold gap size wrong estimation (local) 1342064 1350029 618061 610068 CM091754.1 scaffold257 98.94 True local misassembly 1340122 1340881 619183 618425 CM091754.1 scaffold257 98.95 True local misassembly 1338074 1339513 621612 620176 CM091754.1 scaffold257 99.17 True relocation, inconsistency = 28420 1296885 1307133 634389 624133 CM091754.1 scaffold257 99.32 True indel: indel (<= 5bp) 1294458 1296844 636827 634434 CM091754.1 scaffold257 98.58 True indel: indel (> 5bp) 1293676 1294222 637653 637107 CM091754.1 scaffold257 99.45 True local misassembly 1291760 1292670 640053 639143 CM091754.1 scaffold257 99.67 True indel: stretch of mismatches 1290824 1291754 640989 640059 CM091754.1 scaffold257 99.89 True indel: indel (<= 5bp) 1289789 1290816 642026 640999 CM091754.1 scaffold257 99.22 True local misassembly 1287793 1289086 644025 642732 CM091754.1 scaffold257 99.85 True indel: indel (<= 5bp) 1286015 1287720 645806 644101 CM091754.1 scaffold257 99.82 True local misassembly 1284418 1285155 647405 646668 CM091754.1 scaffold257 99.59 True indel: indel (<= 5bp) 1283546 1284417 648281 647410 CM091754.1 scaffold257 99.77 True local misassembly 1281771 1282880 650482 649373 CM091754.1 scaffold257 99.01 True indel: indel (<= 5bp) 1280560 1281768 651691 650483 CM091754.1 scaffold257 99.42 True indel: indel (<= 5bp) 1279868 1280414 652385 651839 CM091754.1 scaffold257 99.63 True indel: indel (<= 5bp) 1279274 1279867 652981 652388 CM091754.1 scaffold257 99.83 True local misassembly 1276982 1277930 655278 654330 CM091754.1 scaffold257 99.37 True local misassembly 1274276 1276324 657739 655691 CM091754.1 scaffold257 99.41 True local misassembly 1273373 1274002 658503 657874 CM091754.1 scaffold257 99.68 True indel: indel (<= 5bp) 1272570 1273165 659309 658714 CM091754.1 scaffold257 99.5 True local misassembly 1271522 1272089 660381 659814 CM091754.1 scaffold257 99.65 True local misassembly 1269506 1270210 662401 661697 CM091754.1 scaffold257 99.15 True local misassembly 1268193 1268913 663714 662994 CM091754.1 scaffold257 99.58 True indel: indel (<= 5bp) 1266490 1267805 665420 664105 CM091754.1 scaffold257 99.32 True local misassembly 1263744 1264331 668574 667987 CM091754.1 scaffold257 99.66 True indel: indel (> 5bp) 1262405 1263376 669979 669007 CM091754.1 scaffold257 98.46 True fake: not a misassembly (possible transposable element) 1262640 1263376 669980 670717 CM091754.1 scaffold257 98.48 True fake: not a misassembly (possible transposable element) 1155086 1262364 776958 670991 CM091754.1 scaffold257 98.01 True fake: scaffold gap size wrong estimation (local) 1143851 1155095 790682 779404 CM091754.1 scaffold257 98.95 True indel: indel (> 5bp) 1110667 1143610 824235 790932 CM091754.1 scaffold257 96.31 True local misassembly 1108859 1109616 826057 825300 CM091754.1 scaffold257 98.55 True indel: indel (> 5bp) 1107828 1108626 827095 826297 CM091754.1 scaffold257 99.62 True local misassembly 1105816 1106774 829093 828135 CM091754.1 scaffold257 98.12 True indel: indel (<= 5bp) 1104703 1105814 830205 829094 CM091754.1 scaffold257 99.37 True indel: indel (<= 5bp) 1103965 1104698 830939 830206 CM091754.1 scaffold257 99.46 True indel: indel (> 5bp) 1102370 1103964 832574 830980 CM091754.1 scaffold257 99.25 True indel: indel (<= 5bp) 1101662 1102358 833283 832587 CM091754.1 scaffold257 99.43 True local misassembly 1099470 1101013 834827 833284 CM091754.1 scaffold257 99.42 True indel: indel (<= 5bp) 1098579 1099469 835719 834829 CM091754.1 scaffold257 99.55 True indel: indel (<= 5bp) 1096362 1098506 837938 835794 CM091754.1 scaffold257 99.21 True indel: indel (> 5bp) 1095143 1095984 839151 838310 CM091754.1 scaffold257 99.64 True local misassembly 1091780 1093469 842814 841125 CM091754.1 scaffold257 99.47 True indel: indel (<= 5bp) 1089757 1091779 844838 842816 CM091754.1 scaffold257 99.56 True local misassembly 1088280 1088891 846303 845692 CM091754.1 scaffold257 98.69 True indel: indel (<= 5bp) 1087192 1088087 847386 846491 CM091754.1 scaffold257 99.22 True fake: scaffold gap size wrong estimation (local) 1083911 1087192 852149 848859 CM091754.1 scaffold257 99.03 True local misassembly 1083047 1085057 854160 852150 CM091754.1 scaffold257 98.86 True local misassembly 1076811 1084230 861913 854478 CM091754.1 scaffold257 98.74 True fake: scaffold gap size wrong estimation (local) 1070590 1076273 868641 862985 CM091754.1 scaffold257 98.63 True indel: stretch of mismatches 1069991 1070513 869242 868718 CM091754.1 scaffold257 98.86 True local misassembly 1070590 1071464 870117 869243 CM091754.1 scaffold257 99.89 True indel: stretch of mismatches 1065511 1070513 875201 870194 CM091754.1 scaffold257 99.5 True CONTIG scaffold257 875236 misassembled 100806 109148 1 8344 CM091763.1 scaffold310 99.96 True fake: scaffold gap size wrong estimation (local) 109263 110928 8701 10393 CM091763.1 scaffold310 99.34 True local misassembly 111534 118854 11018 18365 CM091763.1 scaffold310 99.32 True CONTIG scaffold310 18365 correct 3923811 3928754 298 5243 CM091757.1 scaffold309 99.58 True local misassembly 3927246 3954195 5244 33135 CM091757.1 scaffold309 99.27 True local misassembly 3954146 3985447 33706 65055 CM091757.1 scaffold309 98.93 True local misassembly 3985963 3986723 65391 66151 CM091757.1 scaffold309 99.34 True indel: indel (<= 5bp) 3986725 3987510 66152 66937 CM091757.1 scaffold309 99.24 True fake: scaffold gap size wrong estimation (local) 3988132 3988692 67604 68164 CM091757.1 scaffold309 100.0 True indel: indel (<= 5bp) 3989047 3989609 68522 69084 CM091757.1 scaffold309 99.64 True indel: indel (<= 5bp) 3989610 3990661 69086 70137 CM091757.1 scaffold309 99.81 True indel: indel (<= 5bp) 3990662 3991236 70139 70713 CM091757.1 scaffold309 99.83 True indel: indel (<= 5bp) 3991237 3992816 70715 72294 CM091757.1 scaffold309 99.56 True indel: indel (<= 5bp) 3992817 3993702 72296 73181 CM091757.1 scaffold309 99.77 True local misassembly 3994203 3994726 73685 74208 CM091757.1 scaffold309 99.81 True local misassembly 3995286 3995836 74764 75314 CM091757.1 scaffold309 99.64 True indel: indel (<= 5bp) 3996311 3996869 75786 76344 CM091757.1 scaffold309 100.0 True indel: indel (<= 5bp) 3996870 3998643 76346 78119 CM091757.1 scaffold309 99.55 True indel: indel (> 5bp) 3998644 4000269 78128 79753 CM091757.1 scaffold309 99.38 True local misassembly 4000468 4001070 79754 80356 CM091757.1 scaffold309 99.5 True indel: indel (<= 5bp) 4001073 4002673 80357 81957 CM091757.1 scaffold309 99.81 True local misassembly 4003433 4004205 82721 83493 CM091757.1 scaffold309 99.87 True indel: indel (<= 5bp) 4004347 4004860 83637 84150 CM091757.1 scaffold309 97.47 True local misassembly 4005101 4006611 86584 88094 CM091757.1 scaffold309 99.93 True indel: indel (> 5bp) 4006890 4007594 88379 89083 CM091757.1 scaffold309 99.57 True indel: indel (<= 5bp) 4007595 4011699 89085 93189 CM091757.1 scaffold309 99.51 True indel: indel (<= 5bp) 4011700 4015327 93191 96818 CM091757.1 scaffold309 99.7 True indel: indel (<= 5bp) 4015328 4016458 96820 97950 CM091757.1 scaffold309 99.73 True local misassembly 4017170 4017709 98665 99204 CM091757.1 scaffold309 99.26 True indel: indel (<= 5bp) 4017710 4018321 99206 99817 CM091757.1 scaffold309 99.51 True local misassembly 4017758 4045419 99846 127489 CM091757.1 scaffold309 99.32 True local misassembly 4045785 4262399 128084 346353 CM091757.1 scaffold309 99.12 True indel: indel (<= 5bp) 4262477 4289334 346434 373904 CM091757.1 scaffold309 99.48 True fake: scaffold gap size wrong estimation (local) 4289678 4290432 374894 375649 CM091757.1 scaffold309 99.6 True CONTIG scaffold309 375952 correct CONTIG scaffold312 1251 unaligned CONTIG scaffold313 450 unaligned CONTIG scaffold314 1503 unaligned CONTIG scaffold315 364 unaligned 8297570 8303057 1 5516 CM091767.1 scaffold316 99.42 True fake: scaffold gap size wrong estimation (local) 8303473 8329099 5902 31903 CM091767.1 scaffold316 98.52 True local misassembly 8330049 8330894 33186 34028 CM091767.1 scaffold316 97.17 True local misassembly 8331357 8332122 34556 35321 CM091767.1 scaffold316 100.0 True local misassembly 8332217 8333854 35832 37469 CM091767.1 scaffold316 99.94 True fake: scaffold gap size wrong estimation (local) 8334001 8346291 37982 50527 CM091767.1 scaffold316 99.55 True indel: indel (> 5bp) 8346335 8358859 50565 63254 CM091767.1 scaffold316 98.41 True fake: scaffold gap size wrong estimation (local) 8358951 8379847 63350 84251 CM091767.1 scaffold316 98.26 True CONTIG scaffold316 84260 correct 16317658 16318238 586 1 CM091752.1 scaffold317 95.93 True CONTIG scaffold317 1050 correct 7222256 7222962 731 1 CM091758.1 scaffold318 96.58 True CONTIG scaffold318 731 correct 1054905 1055660 293 1048 CM091752.1 scaffold319 100.0 True indel: indel (> 5bp) 1056053 1057859 1449 3255 CM091752.1 scaffold319 99.34 True local misassembly 1058563 1059796 3534 4767 CM091752.1 scaffold319 99.84 True indel: indel (<= 5bp) 1059798 1060334 4768 5304 CM091752.1 scaffold319 98.7 True indel: indel (<= 5bp) 1060478 1061008 5453 5983 CM091752.1 scaffold319 99.81 True indel: indel (<= 5bp) 1061010 1061699 5984 6673 CM091752.1 scaffold319 99.71 True indel: indel (<= 5bp) 1061700 1062967 6675 7942 CM091752.1 scaffold319 98.97 True indel: indel (> 5bp) 1062968 1063841 7963 8836 CM091752.1 scaffold319 98.51 True local misassembly 1064465 1070847 10161 16542 CM091752.1 scaffold319 99.44 True local misassembly 1071017 1071829 17719 18531 CM091752.1 scaffold319 99.63 True indel: indel (<= 5bp) 1071913 1072545 18616 19248 CM091752.1 scaffold319 98.89 True local misassembly 1074171 1076516 20346 22691 CM091752.1 scaffold319 98.85 True local misassembly 1077719 1080012 22862 25155 CM091752.1 scaffold319 99.04 True indel: indel (> 5bp) 1080025 1081108 25156 26239 CM091752.1 scaffold319 99.45 True fake: scaffold gap size wrong estimation (local) 1083443 1096927 28848 42630 CM091752.1 scaffold319 97.24 True local misassembly 1097202 1107263 43795 54022 CM091752.1 scaffold319 97.2 True fake: scaffold gap size wrong estimation (local) 1108417 1109807 54970 56360 CM091752.1 scaffold319 99.5 True indel: indel (<= 5bp) 1109808 1111805 56362 58359 CM091752.1 scaffold319 99.6 True indel: indel (<= 5bp) 1111806 1112328 58363 58885 CM091752.1 scaffold319 98.28 True indel: stretch of mismatches 1112340 1113831 58897 60388 CM091752.1 scaffold319 99.33 True local misassembly 1114684 1115257 61649 62222 CM091752.1 scaffold319 98.26 True local misassembly 1115768 1116856 62738 63826 CM091752.1 scaffold319 98.44 True local misassembly 1117626 1118536 65162 66072 CM091752.1 scaffold319 99.67 True indel: indel (<= 5bp) 1118538 1119636 66073 67171 CM091752.1 scaffold319 99.27 True local misassembly 1119937 1120609 67187 67859 CM091752.1 scaffold319 98.81 True indel: indel (> 5bp) 1120619 1121483 67860 68724 CM091752.1 scaffold319 99.42 True indel: indel (<= 5bp) 1121484 1122559 68728 69803 CM091752.1 scaffold319 99.26 True local misassembly 1123457 1124478 70352 71373 CM091752.1 scaffold319 99.51 True fake: scaffold gap size wrong estimation (local) 1127814 1146732 74418 94463 CM091752.1 scaffold319 97.2 True local misassembly 1147537 1148153 95529 96145 CM091752.1 scaffold319 99.51 True local misassembly 1149002 1151555 96997 99550 CM091752.1 scaffold319 99.3 True indel: indel (> 5bp) 1152034 1152940 100039 100945 CM091752.1 scaffold319 99.89 True indel: indel (<= 5bp) 1152942 1153708 100946 101712 CM091752.1 scaffold319 99.74 True indel: indel (<= 5bp) 1154181 1154754 102183 102756 CM091752.1 scaffold319 98.43 True local misassembly 1155004 1156221 103127 104344 CM091752.1 scaffold319 99.43 True indel: indel (<= 5bp) 1156222 1156923 104348 105049 CM091752.1 scaffold319 98.72 True indel: indel (> 5bp) 1156930 1157570 105050 105690 CM091752.1 scaffold319 96.26 True indel: indel (> 5bp) 1157571 1159155 105733 107317 CM091752.1 scaffold319 98.23 True indel: stretch of mismatches 1159302 1160154 107464 108316 CM091752.1 scaffold319 99.3 True indel: indel (<= 5bp) 1160155 1161946 108320 110111 CM091752.1 scaffold319 99.0 True local misassembly 1161947 1163369 110958 112380 CM091752.1 scaffold319 99.86 True indel: indel (<= 5bp) 1163370 1164436 112382 113448 CM091752.1 scaffold319 99.06 True fake: scaffold gap size wrong estimation (local) 1165132 1165986 114185 115039 CM091752.1 scaffold319 99.3 True local misassembly 1165987 1166612 115727 116352 CM091752.1 scaffold319 96.81 True indel: indel (> 5bp) 1166672 1178043 116399 127768 CM091752.1 scaffold319 98.27 True local misassembly 1177264 1178191 127773 128700 CM091752.1 scaffold319 99.68 True local misassembly 1178772 1180181 129282 130691 CM091752.1 scaffold319 99.36 True fake: scaffold gap size wrong estimation (local) 1180589 1182261 131500 133172 CM091752.1 scaffold319 99.7 True indel: indel (<= 5bp) 1182262 1183628 133174 134540 CM091752.1 scaffold319 99.2 True local misassembly 1184641 1185732 135115 136206 CM091752.1 scaffold319 98.53 True indel: indel (> 5bp) 1185733 1186533 136219 137019 CM091752.1 scaffold319 99.25 True indel: indel (<= 5bp) 1186534 1188122 137021 138609 CM091752.1 scaffold319 99.18 True indel: indel (> 5bp) 1188413 1189139 138915 139641 CM091752.1 scaffold319 100.0 True indel: stretch of mismatches 1189596 1190120 140098 140622 CM091752.1 scaffold319 99.81 True local misassembly 1191643 1192482 142067 142906 CM091752.1 scaffold319 99.52 True local misassembly 1191643 1192965 143153 144475 CM091752.1 scaffold319 99.7 True local misassembly 1193146 1194235 144476 145565 CM091752.1 scaffold319 98.44 True indel: indel (> 5bp) 1194236 1194907 145573 146244 CM091752.1 scaffold319 99.85 True indel: indel (> 5bp) 1194946 1195459 146245 146758 CM091752.1 scaffold319 99.42 True local misassembly 1196046 1196586 147305 147845 CM091752.1 scaffold319 99.63 True indel: indel (<= 5bp) 1196587 1198165 147847 149425 CM091752.1 scaffold319 99.37 True indel: indel (<= 5bp) 1198166 1199068 149428 150330 CM091752.1 scaffold319 99.11 True indel: indel (<= 5bp) 1199070 1200798 150331 152059 CM091752.1 scaffold319 99.31 True local misassembly 1201146 1201717 153896 154467 CM091752.1 scaffold319 96.15 True fake: scaffold gap size wrong estimation (local) 1203314 1207055 156195 159967 CM091752.1 scaffold319 98.52 True local misassembly 1207137 1212778 160170 165968 CM091752.1 scaffold319 96.08 True CONTIG scaffold319 165968 correct 4214862 4219002 1 4142 CM091762.1 scaffold320 99.61 True CONTIG scaffold320 4159 correct 6205596 6206169 866 293 CM091768.1 scaffold321 97.39 True CONTIG scaffold321 866 correct CONTIG scaffold322 361 unaligned 1956852 1960439 1 3653 CM091764.1 scaffold323 97.35 True CONTIG scaffold323 3892 correct 12537228 12541598 4554 1 CM091754.1 scaffold302 95.56 True fake: scaffold gap size wrong estimation (local) 12506071 12537047 36139 5081 CM091754.1 scaffold302 99.4 True local misassembly 12359258 12505457 186307 36877 CM091754.1 scaffold302 98.72 True fake: scaffold gap size wrong estimation (local) 12322075 12359159 224868 187152 CM091754.1 scaffold302 97.32 True indel: indel (<= 5bp) 12260510 12322060 286498 224879 CM091754.1 scaffold302 99.17 True indel: indel (<= 5bp) 12100838 12260210 447808 286793 CM091754.1 scaffold302 98.61 True relocation, inconsistency = 21821 12040222 12075936 486616 450889 CM091754.1 scaffold302 99.55 True indel: stretch of mismatches 12007598 12040177 520280 486661 CM091754.1 scaffold302 97.96 True indel: indel (<= 5bp) 11876542 12007522 652826 520351 CM091754.1 scaffold302 98.41 True indel: indel (> 5bp) 11715434 11876378 815437 652929 CM091754.1 scaffold302 99.11 True CONTIG scaffold302 815437 misassembled 15285860 15345476 1 59349 CM091758.1 scaffold325 97.5 True indel: indel (<= 5bp) 15345635 15373278 59504 86999 CM091758.1 scaffold325 98.82 True indel: indel (> 5bp) 15373313 15383372 87046 96924 CM091758.1 scaffold325 96.34 True fake: scaffold gap size wrong estimation (local) 15383465 15432047 97021 146073 CM091758.1 scaffold325 98.85 True CONTIG scaffold325 146106 correct 4529089 4530553 1460 1 CM091768.1 scaffold326 99.45 True local misassembly 4514112 4529730 17280 1504 CM091768.1 scaffold326 98.62 True fake: scaffold gap size wrong estimation (local) 4510856 4513389 20775 18246 CM091768.1 scaffold326 99.53 True fake: scaffold gap size wrong estimation (local) 4508185 4509978 23757 21963 CM091768.1 scaffold326 99.78 True indel: indel (> 5bp) 4490404 4508050 41638 23916 CM091768.1 scaffold326 99.21 True fake: scaffold gap size wrong estimation (local) 4483008 4490098 49162 42045 CM091768.1 scaffold326 99.8 True CONTIG scaffold326 49162 correct CONTIG scaffold327 712 unaligned 13088117 13100700 897 13484 CM091757.1 scaffold328 99.95 True CONTIG scaffold328 13484 correct CONTIG scaffold329 462 unaligned 6096009 6225621 1 129398 CM091754.1 scaffold247 99.63 True local misassembly 6226225 6421360 130037 326845 CM091754.1 scaffold247 99.2 True fake: scaffold gap size wrong estimation (local) 6421487 6615775 327383 522987 CM091754.1 scaffold247 99.47 True fake: scaffold gap size wrong estimation (local) 6615872 6620499 523813 528765 CM091754.1 scaffold247 99.33 True indel: indel (> 5bp) 6620687 6639908 528983 549228 CM091754.1 scaffold247 99.34 True indel: indel (<= 5bp) 6640006 6679065 549328 588670 CM091754.1 scaffold247 98.27 True fake: scaffold gap size wrong estimation (local) 6679496 6680139 589209 589852 CM091754.1 scaffold247 98.76 True indel: indel (<= 5bp) 6680365 6682854 590083 592572 CM091754.1 scaffold247 99.16 True indel: indel (> 5bp) 6682861 6684352 592573 594064 CM091754.1 scaffold247 99.8 True local misassembly 6685823 6687518 595530 597225 CM091754.1 scaffold247 100.0 True indel: indel (<= 5bp) 6687527 6688044 597233 597750 CM091754.1 scaffold247 100.0 True fake: scaffold gap size wrong estimation (extensive) 6698387 6700088 598286 599987 CM091754.1 scaffold247 99.59 True indel: indel (> 5bp) 6700601 6703474 600453 603326 CM091754.1 scaffold247 99.93 True indel: indel (<= 5bp) 6703475 6704142 603329 603996 CM091754.1 scaffold247 99.25 True indel: indel (<= 5bp) 6704143 6706468 603998 606323 CM091754.1 scaffold247 99.4 True local misassembly 6707260 6710038 607128 609906 CM091754.1 scaffold247 99.57 True indel: indel (<= 5bp) 6710339 6712120 610209 611990 CM091754.1 scaffold247 99.83 True indel: indel (<= 5bp) 6712121 6713304 611992 613175 CM091754.1 scaffold247 99.83 True indel: indel (<= 5bp) 6713306 6715440 613176 615310 CM091754.1 scaffold247 99.81 True indel: indel (<= 5bp) 6715443 6716198 615311 616066 CM091754.1 scaffold247 99.6 True indel: indel (> 5bp) 6716407 6716980 616282 616855 CM091754.1 scaffold247 99.83 True indel: indel (> 5bp) 6716990 6717644 616856 617510 CM091754.1 scaffold247 99.24 True indel: indel (<= 5bp) 6717664 6719158 617532 619026 CM091754.1 scaffold247 99.73 True indel: indel (<= 5bp) 6719159 6720724 619028 620593 CM091754.1 scaffold247 99.55 True local misassembly 6721661 6722718 621420 622477 CM091754.1 scaffold247 99.05 True local misassembly 6723254 6724587 623015 624348 CM091754.1 scaffold247 99.63 True local misassembly 6726092 6727013 625856 626777 CM091754.1 scaffold247 99.24 True local misassembly 6728026 6732013 628049 632036 CM091754.1 scaffold247 99.67 True local misassembly 6732879 6733408 632482 633011 CM091754.1 scaffold247 99.06 True indel: indel (<= 5bp) 6733409 6734222 633013 633826 CM091754.1 scaffold247 99.02 True indel: indel (<= 5bp) 6734383 6735618 633985 635220 CM091754.1 scaffold247 99.6 True indel: indel (<= 5bp) 6735619 6736285 635223 635889 CM091754.1 scaffold247 99.25 True indel: indel (<= 5bp) 6736286 6739203 635893 638810 CM091754.1 scaffold247 99.66 True indel: indel (<= 5bp) 6739260 6739788 638871 639399 CM091754.1 scaffold247 99.81 True indel: indel (<= 5bp) 6739816 6741456 639422 641062 CM091754.1 scaffold247 99.39 True indel: indel (<= 5bp) 6741457 6742273 641064 641880 CM091754.1 scaffold247 99.63 True indel: indel (<= 5bp) 6742274 6742852 641882 642460 CM091754.1 scaffold247 100.0 True local misassembly 6743829 6744788 643439 644398 CM091754.1 scaffold247 99.9 True local misassembly 6745506 6746123 645568 646185 CM091754.1 scaffold247 99.51 True indel: indel (<= 5bp) 6746126 6750937 646186 650997 CM091754.1 scaffold247 99.75 True fake: scaffold gap size wrong estimation (local) 6751309 6752788 651753 653232 CM091754.1 scaffold247 99.93 True indel: indel (<= 5bp) 6752790 6754212 653233 654655 CM091754.1 scaffold247 99.93 True indel: indel (<= 5bp) 6754214 6756564 654656 657006 CM091754.1 scaffold247 99.66 True indel: indel (<= 5bp) 6756791 6758315 657231 658755 CM091754.1 scaffold247 99.67 True indel: indel (<= 5bp) 6758316 6762239 658757 662680 CM091754.1 scaffold247 99.46 True local misassembly 6763209 6764816 663670 665277 CM091754.1 scaffold247 99.81 True indel: indel (<= 5bp) 6764817 6765325 665279 665787 CM091754.1 scaffold247 99.61 True indel: indel (<= 5bp) 6765326 6766116 665789 666579 CM091754.1 scaffold247 99.49 True indel: indel (<= 5bp) 6766117 6769803 666581 670267 CM091754.1 scaffold247 99.59 True indel: indel (> 5bp) 6769804 6772717 670274 673187 CM091754.1 scaffold247 99.73 True indel: stretch of mismatches 6773103 6774015 673573 674485 CM091754.1 scaffold247 99.89 True indel: indel (<= 5bp) 6774016 6780086 674487 680557 CM091754.1 scaffold247 99.72 True indel: indel (<= 5bp) 6780094 6781378 680569 681853 CM091754.1 scaffold247 99.92 True indel: indel (<= 5bp) 6781379 6782214 681855 682690 CM091754.1 scaffold247 99.88 True indel: indel (> 5bp) 6782215 6782823 682701 683309 CM091754.1 scaffold247 99.67 True indel: indel (<= 5bp) 6782824 6783536 683311 684023 CM091754.1 scaffold247 100.0 True indel: indel (<= 5bp) 6783718 6784371 684207 684860 CM091754.1 scaffold247 99.69 True indel: indel (<= 5bp) 6784377 6785304 684861 685788 CM091754.1 scaffold247 99.68 True indel: indel (<= 5bp) 6785305 6787444 685791 687930 CM091754.1 scaffold247 99.81 True local misassembly 6787897 6789402 688787 690292 CM091754.1 scaffold247 99.8 True indel: indel (> 5bp) 6789625 6790445 690549 691369 CM091754.1 scaffold247 99.88 True indel: indel (<= 5bp) 6790447 6791371 691370 692294 CM091754.1 scaffold247 99.46 True indel: stretch of mismatches 6791492 6792467 692415 693390 CM091754.1 scaffold247 99.9 True indel: indel (> 5bp) 6792484 6793677 693391 694584 CM091754.1 scaffold247 99.92 True indel: indel (<= 5bp) 6793793 6794689 694701 695597 CM091754.1 scaffold247 100.0 True indel: indel (<= 5bp) 6794690 6795311 695599 696220 CM091754.1 scaffold247 99.2 True indel: indel (<= 5bp) 6795312 6796434 696222 697344 CM091754.1 scaffold247 99.82 True local misassembly 6796981 6798151 697892 699062 CM091754.1 scaffold247 99.83 True indel: stretch of mismatches 6798305 6799347 699216 700258 CM091754.1 scaffold247 99.81 True indel: indel (> 5bp) 6799730 6802373 700628 703271 CM091754.1 scaffold247 99.77 True indel: indel (<= 5bp) 6802774 6803301 703670 704197 CM091754.1 scaffold247 99.81 True local misassembly 6803800 6806634 704700 707534 CM091754.1 scaffold247 99.68 True indel: indel (<= 5bp) 6806635 6808436 707536 709337 CM091754.1 scaffold247 100.0 True indel: indel (<= 5bp) 6808597 6809272 709500 710175 CM091754.1 scaffold247 99.56 True indel: indel (> 5bp) 6809313 6810859 710210 711756 CM091754.1 scaffold247 99.42 True indel: indel (<= 5bp) 6810862 6813356 711757 714251 CM091754.1 scaffold247 99.88 True indel: indel (<= 5bp) 6813364 6813882 714257 714775 CM091754.1 scaffold247 100.0 True indel: indel (<= 5bp) 6813883 6818334 714777 719228 CM091754.1 scaffold247 99.82 True indel: indel (<= 5bp) 6818650 6822936 719543 723829 CM091754.1 scaffold247 99.7 True indel: indel (<= 5bp) 6822949 6826435 723841 727327 CM091754.1 scaffold247 99.91 True indel: indel (<= 5bp) 6826436 6828280 727329 729173 CM091754.1 scaffold247 99.62 True indel: indel (<= 5bp) 6828281 6829692 729175 730586 CM091754.1 scaffold247 99.5 True indel: indel (> 5bp) 6829693 6830771 730594 731672 CM091754.1 scaffold247 99.91 True indel: indel (<= 5bp) 6830772 6832163 731674 733065 CM091754.1 scaffold247 99.71 True indel: indel (<= 5bp) 6832164 6832691 733067 733594 CM091754.1 scaffold247 99.81 True indel: stretch of mismatches 6832801 6833580 733704 734483 CM091754.1 scaffold247 99.74 True indel: indel (<= 5bp) 6833900 6836621 734804 737525 CM091754.1 scaffold247 100.0 True indel: indel (<= 5bp) 6836622 6840903 737527 741808 CM091754.1 scaffold247 99.95 True indel: indel (<= 5bp) 6840904 6842837 741810 743743 CM091754.1 scaffold247 99.95 True indel: indel (<= 5bp) 6842838 6843572 743745 744479 CM091754.1 scaffold247 100.0 True indel: stretch of mismatches 6843972 6853666 744879 754573 CM091754.1 scaffold247 99.97 True indel: indel (<= 5bp) 6853667 6860655 754575 761563 CM091754.1 scaffold247 99.91 True indel: indel (<= 5bp) 6860657 6861823 761564 762730 CM091754.1 scaffold247 99.83 True indel: indel (<= 5bp) 6861827 6864157 762731 765061 CM091754.1 scaffold247 100.0 True indel: indel (<= 5bp) 6864158 6865315 765063 766220 CM091754.1 scaffold247 99.91 True indel: indel (<= 5bp) 6865317 6866606 766221 767510 CM091754.1 scaffold247 100.0 True relocation, inconsistency = 15423 6882030 6883138 767511 768619 CM091754.1 scaffold247 100.0 True indel: indel (<= 5bp) 6883139 6884249 768621 769731 CM091754.1 scaffold247 99.82 True indel: indel (<= 5bp) 6884250 6890393 769733 775876 CM091754.1 scaffold247 99.93 True indel: indel (> 5bp) 6890394 6896955 775884 782445 CM091754.1 scaffold247 99.91 True indel: indel (<= 5bp) 6896957 6902441 782446 787930 CM091754.1 scaffold247 99.93 True indel: indel (<= 5bp) 6902445 6905271 787931 790757 CM091754.1 scaffold247 99.96 True local misassembly 6906020 6907973 791509 793462 CM091754.1 scaffold247 99.85 True indel: indel (<= 5bp) 6908294 6909262 793786 794754 CM091754.1 scaffold247 99.9 True local misassembly 6910140 6910938 795633 796431 CM091754.1 scaffold247 99.87 True indel: indel (<= 5bp) 6910940 6911497 796432 796989 CM091754.1 scaffold247 100.0 True indel: indel (<= 5bp) 6911498 6914240 796991 799733 CM091754.1 scaffold247 99.45 True indel: indel (<= 5bp) 6914242 6915559 799734 801051 CM091754.1 scaffold247 99.85 True local misassembly 6916152 6917472 801651 802971 CM091754.1 scaffold247 99.17 True indel: indel (> 5bp) 6917506 6918975 803012 804481 CM091754.1 scaffold247 99.66 True indel: indel (<= 5bp) 6919157 6921631 804664 807138 CM091754.1 scaffold247 99.84 True local misassembly 6922176 6922804 807665 808293 CM091754.1 scaffold247 99.84 True indel: indel (<= 5bp) 6923156 6924445 808648 809937 CM091754.1 scaffold247 99.84 True indel: indel (<= 5bp) 6924665 6925844 810159 811338 CM091754.1 scaffold247 99.58 True local misassembly 6927698 6928433 813193 813928 CM091754.1 scaffold247 99.59 True indel: indel (> 5bp) 6928664 7133309 814123 1023732 CM091754.1 scaffold247 99.11 True local misassembly 7133636 7176777 1024551 1068434 CM091754.1 scaffold247 99.12 True indel: indel (> 5bp) 7176830 7214321 1068479 1105968 CM091754.1 scaffold247 99.28 True fake: scaffold gap size wrong estimation (local) 7214422 7272108 1106289 1165044 CM091754.1 scaffold247 99.02 True local misassembly 7272188 7301120 1165460 1194926 CM091754.1 scaffold247 99.37 True indel: indel (> 5bp) 7301214 7348417 1195031 1243399 CM091754.1 scaffold247 99.3 True indel: indel (> 5bp) 7348448 7387544 1243456 1284262 CM091754.1 scaffold247 95.84 True indel: indel (> 5bp) 7387608 7414864 1284353 1313831 CM091754.1 scaffold247 97.28 True local misassembly 7414918 7585888 1314081 1489228 CM091754.1 scaffold247 99.0 True fake: scaffold gap size wrong estimation (local) 7585998 7599295 1489815 1503894 CM091754.1 scaffold247 99.39 True local misassembly 7599703 7645251 1504657 1554092 CM091754.1 scaffold247 98.33 True fake: scaffold gap size wrong estimation (local) 7645345 7651449 1554181 1560475 CM091754.1 scaffold247 99.36 True fake: scaffold gap size wrong estimation (local) 7651545 7688749 1561198 1600571 CM091754.1 scaffold247 99.75 True indel: indel (> 5bp) 7688984 7752471 1600850 1664520 CM091754.1 scaffold247 99.51 True local misassembly 7751423 7969024 1664521 1886698 CM091754.1 scaffold247 99.21 True indel: indel (<= 5bp) 7969056 8123356 1886729 2043439 CM091754.1 scaffold247 99.52 True indel: indel (> 5bp) 8123382 8174315 2043471 2095051 CM091754.1 scaffold247 99.6 True indel: indel (> 5bp) 8174496 8284757 2095249 2208162 CM091754.1 scaffold247 99.5 True local misassembly 8285549 8286053 2208979 2209485 CM091754.1 scaffold247 98.82 True indel: indel (> 5bp) 8286223 8489473 2209672 2416273 CM091754.1 scaffold247 99.25 True local misassembly 8489649 8751648 2416818 2680928 CM091754.1 scaffold247 99.38 True fake: scaffold gap size wrong estimation (local) 8751824 8814394 2681888 2744416 CM091754.1 scaffold247 99.73 True fake: scaffold gap size wrong estimation (local) 8814482 9106588 2745036 3049029 CM091754.1 scaffold247 98.95 True CONTIG scaffold247 3049029 misassembled 9208976 9253320 45 47295 CM091761.1 scaffold292 99.32 True indel: indel (> 5bp) 9253388 9492669 47370 289915 CM091761.1 scaffold292 99.19 True fake: scaffold gap size wrong estimation (local) 9492865 9530821 290894 331382 CM091761.1 scaffold292 99.18 True fake: scaffold gap size wrong estimation (local) 9531432 9560294 331842 361210 CM091761.1 scaffold292 98.62 True indel: indel (> 5bp) 9560319 9689987 361263 491640 CM091761.1 scaffold292 99.38 True indel: indel (> 5bp) 9690026 9797947 491641 603298 CM091761.1 scaffold292 99.43 True fake: scaffold gap size wrong estimation (local) 9798084 9962526 604286 770918 CM091761.1 scaffold292 99.4 True fake: scaffold gap size wrong estimation (local) 9962613 9967845 771586 777022 CM091761.1 scaffold292 99.65 True fake: scaffold gap size wrong estimation (local) 9968252 10018094 777925 827887 CM091761.1 scaffold292 99.53 True indel: indel (> 5bp) 10018120 10035595 827935 847849 CM091761.1 scaffold292 99.6 True fake: scaffold gap size wrong estimation (local) 10035776 10078426 848047 893911 CM091761.1 scaffold292 99.36 True fake: scaffold gap size wrong estimation (local) 10078873 10144994 894500 963916 CM091761.1 scaffold292 99.4 True fake: scaffold gap size wrong estimation (local) 10145103 10329246 964613 1149778 CM091761.1 scaffold292 99.14 True fake: scaffold gap size wrong estimation (local) 10329331 10444537 1150698 1268299 CM091761.1 scaffold292 98.85 True local misassembly 10444907 10480552 1268784 1305011 CM091761.1 scaffold292 99.31 True indel: stretch of mismatches 10480627 10507452 1305086 1332514 CM091761.1 scaffold292 99.36 True local misassembly 10508199 10539916 1333290 1365013 CM091761.1 scaffold292 99.42 True indel: indel (> 5bp) 10540036 10634033 1365083 1461259 CM091761.1 scaffold292 99.34 True fake: scaffold gap size wrong estimation (local) 10634188 10748858 1462107 1576763 CM091761.1 scaffold292 99.36 True fake: scaffold gap size wrong estimation (local) 10748566 10760733 1577262 1589742 CM091761.1 scaffold292 98.99 True indel: indel (<= 5bp) 10760769 11086655 1589775 1913933 CM091761.1 scaffold292 97.81 True indel: indel (<= 5bp) 11086809 11275018 1914085 2105157 CM091761.1 scaffold292 98.84 True fake: scaffold gap size wrong estimation (local) 11275560 11280988 2106166 2111598 CM091761.1 scaffold292 99.52 True fake: scaffold gap size wrong estimation (local) 11281980 11313088 2112746 2145199 CM091761.1 scaffold292 98.07 True indel: indel (> 5bp) 11313257 11313991 2145386 2146145 CM091761.1 scaffold292 99.86 True fake: scaffold gap size wrong estimation (local) 11314407 11314983 2147144 2147720 CM091761.1 scaffold292 100.0 True fake: scaffold gap size wrong estimation (local) 11315571 11322184 2148547 2155165 CM091761.1 scaffold292 99.05 True fake: scaffold gap size wrong estimation (local) 11322754 11338811 2156145 2174401 CM091761.1 scaffold292 99.15 True fake: scaffold gap size wrong estimation (local) 11338893 11341214 2174502 2176822 CM091761.1 scaffold292 99.57 True fake: scaffold gap size wrong estimation (local) 11342391 11344953 2177842 2180416 CM091761.1 scaffold292 99.88 True fake: scaffold gap size wrong estimation (local) 11347036 11347897 2183737 2184598 CM091761.1 scaffold292 99.77 True fake: scaffold gap size wrong estimation (local) 11348296 11357935 2185268 2196029 CM091761.1 scaffold292 98.39 True fake: scaffold gap size wrong estimation (local) 11358070 11366136 2196219 2204334 CM091761.1 scaffold292 99.46 True fake: scaffold gap size wrong estimation (local) 11366305 11369175 2205354 2208245 CM091761.1 scaffold292 99.2 True fake: scaffold gap size wrong estimation (local) 11370442 11371306 2209754 2210618 CM091761.1 scaffold292 99.88 True local misassembly 11371964 11373193 2211271 2212500 CM091761.1 scaffold292 99.67 True local misassembly 11373194 11374525 2212945 2214276 CM091761.1 scaffold292 99.55 True indel: indel (<= 5bp) 11374530 11377518 2214277 2217265 CM091761.1 scaffold292 99.97 True indel: indel (<= 5bp) 11377519 11378218 2217271 2217970 CM091761.1 scaffold292 99.71 True fake: scaffold gap size wrong estimation (local) 11378467 11379022 2218456 2219011 CM091761.1 scaffold292 99.82 True fake: scaffold gap size wrong estimation (local) 11379398 11387794 2219475 2228324 CM091761.1 scaffold292 99.2 True fake: scaffold gap size wrong estimation (local) 11389352 11393506 2230959 2235187 CM091761.1 scaffold292 99.54 True fake: scaffold gap size wrong estimation (local) 11393650 11486395 2237148 2332566 CM091761.1 scaffold292 98.94 True fake: scaffold gap size wrong estimation (local) 11487137 11549906 2333390 2396958 CM091761.1 scaffold292 98.97 True fake: scaffold gap size wrong estimation (local) 11550089 11550917 2398743 2399572 CM091761.1 scaffold292 99.64 True CONTIG scaffold292 2399572 correct 14348632 14361568 1 12957 CM091758.1 scaffold330 99.09 True indel: indel (> 5bp) 14361586 14396009 12964 47451 CM091758.1 scaffold330 98.95 True local misassembly 14396500 14481448 48194 133464 CM091758.1 scaffold330 98.22 True local misassembly 14481913 14550335 134189 205179 CM091758.1 scaffold330 97.21 True indel: indel (> 5bp) 14550409 14575223 205277 230532 CM091758.1 scaffold330 97.47 True indel: indel (> 5bp) 14575416 14628448 230776 285346 CM091758.1 scaffold330 98.4 True local misassembly 14629867 14649981 286390 306211 CM091758.1 scaffold330 97.07 True local misassembly 14650870 14690847 307139 348989 CM091758.1 scaffold330 95.86 True local misassembly 14690006 14690901 349041 349930 CM091758.1 scaffold330 99.11 True local misassembly 14690007 14706450 349931 366283 CM091758.1 scaffold330 97.4 True indel: indel (> 5bp) 14706635 14715080 366497 374933 CM091758.1 scaffold330 99.37 True fake: scaffold gap size wrong estimation (local) 14715060 14725623 375738 386420 CM091758.1 scaffold330 97.95 True local misassembly 14727826 14729623 389980 391777 CM091758.1 scaffold330 99.05 True indel: indel (> 5bp) 14729755 14767387 391915 429559 CM091758.1 scaffold330 97.49 True local misassembly 14767702 14827654 430267 491707 CM091758.1 scaffold330 99.12 True indel: indel (> 5bp) 14827811 14828480 491883 492552 CM091758.1 scaffold330 100.0 True indel: indel (<= 5bp) 14828481 14829125 492554 493198 CM091758.1 scaffold330 99.22 True indel: indel (<= 5bp) 14829129 14830733 493199 494803 CM091758.1 scaffold330 99.5 True indel: indel (> 5bp) 14830741 14832062 494804 496125 CM091758.1 scaffold330 99.32 True local misassembly 14832113 14833040 496888 497815 CM091758.1 scaffold330 99.35 True indel: indel (<= 5bp) 14833517 14834223 498294 499000 CM091758.1 scaffold330 99.15 True CONTIG scaffold330 499000 correct 3959165 3968073 8732 1 CM091767.1 scaffold271 97.27 True indel: indel (> 5bp) 3912065 3958987 56020 8931 CM091767.1 scaffold271 98.87 True local misassembly 3696595 3911993 272365 56480 CM091767.1 scaffold271 99.39 True local misassembly 3630024 3696388 340658 272976 CM091767.1 scaffold271 97.62 True local misassembly 3623687 3629930 347436 341193 CM091767.1 scaffold271 99.98 True local misassembly 3616101 3616912 348249 347437 CM091767.1 scaffold271 99.66 True relocation, inconsistency = -7576 3604861 3623676 367076 348250 CM091767.1 scaffold271 99.15 True fake: scaffold gap size wrong estimation (local) 3546390 3604696 425838 367519 CM091767.1 scaffold271 99.45 True indel: indel (> 5bp) 3541114 3546353 431159 425921 CM091767.1 scaffold271 99.87 True local misassembly 3416120 3541810 557821 431175 CM091767.1 scaffold271 99.02 True indel: indel (<= 5bp) 3337225 3415951 638453 557991 CM091767.1 scaffold271 98.02 True indel: indel (> 5bp) 3308747 3336818 668684 638918 CM091767.1 scaffold271 97.05 True fake: scaffold gap size wrong estimation (local) 3259310 3308652 717075 668787 CM091767.1 scaffold271 96.07 True indel: indel (> 5bp) 3258424 3259281 717969 717111 CM091767.1 scaffold271 99.42 True local misassembly 3233151 3259281 745069 718396 CM091767.1 scaffold271 97.95 True local misassembly 3214318 3229242 759984 745070 CM091767.1 scaffold271 99.76 True indel: indel (> 5bp) 3100795 3214268 873483 760043 CM091767.1 scaffold271 99.18 True indel: indel (> 5bp) 3074592 3100726 899709 873561 CM091767.1 scaffold271 99.66 True relocation, inconsistency = -26085 3074642 3075560 899710 900636 CM091767.1 scaffold271 98.39 True inversion 3018962 3074529 956729 900637 CM091767.1 scaffold271 98.34 True indel: indel (> 5bp) 3004412 3018809 971400 956966 CM091767.1 scaffold271 98.95 True local misassembly 2971057 3004301 1004645 971608 CM091767.1 scaffold271 98.1 True indel: indel (> 5bp) 2704126 2970783 1272479 1004977 CM091767.1 scaffold271 99.26 True fake: not a misassembly (possible transposable element) 262381 263407 1272500 1273526 CM091768.1 scaffold271 100.0 True fake: not a misassembly (possible transposable element) 2548707 2703881 1427687 1273527 CM091767.1 scaffold271 98.71 True indel: indel (> 5bp) 2471659 2548549 1505600 1427887 CM091767.1 scaffold271 99.14 True local misassembly 2439332 2471634 1538870 1505983 CM091767.1 scaffold271 98.0 True local misassembly 2414633 2441240 1565361 1538871 CM091767.1 scaffold271 98.72 True indel: indel (> 5bp) 2401446 2414608 1578595 1565432 CM091767.1 scaffold271 99.53 True fake: not a misassembly (possible transposable element) 2400691 2401419 1578660 1579407 CM091767.1 scaffold271 97.4 True fake: not a misassembly (possible transposable element) 2348568 2401686 1633859 1579408 CM091767.1 scaffold271 97.22 True relocation, inconsistency = 1564710 3967530 3968073 1634993 1635536 CM091767.1 scaffold271 99.82 True translocation 10976823 10978131 1635546 1636855 CM091761.1 scaffold271 96.76 True CONTIG scaffold271 1637695 misassembled 3403304 3405862 1 2568 CM091756.1 scaffold258 99.07 True local misassembly 3405289 3408843 2719 6277 CM091756.1 scaffold258 99.44 True local misassembly 3407981 3408620 6278 6917 CM091756.1 scaffold258 100.0 True local misassembly 3409642 3410257 7950 8565 CM091756.1 scaffold258 100.0 True local misassembly 3410716 3412018 9403 10705 CM091756.1 scaffold258 100.0 True indel: indel (> 5bp) 3412019 3414365 10717 13063 CM091756.1 scaffold258 99.96 True indel: indel (<= 5bp) 3414366 3415597 13065 14296 CM091756.1 scaffold258 99.92 True local misassembly 3414465 3622843 14297 223674 CM091756.1 scaffold258 98.98 True local misassembly 3621989 3637480 223675 239279 CM091756.1 scaffold258 99.37 True indel: indel (> 5bp) 3637712 3706616 239553 310043 CM091756.1 scaffold258 97.87 True local misassembly 3706825 4071078 310491 680579 CM091756.1 scaffold258 98.5 True local misassembly 4070105 4165015 680580 778037 CM091756.1 scaffold258 98.89 True indel: indel (> 5bp) 4165042 4189857 778092 804163 CM091756.1 scaffold258 99.33 True indel: indel (> 5bp) 4190038 4257796 804361 873178 CM091756.1 scaffold258 99.53 True local misassembly 4258432 4370639 874139 986428 CM091756.1 scaffold258 99.3 True indel: stretch of mismatches 4370684 4422402 986473 1039150 CM091756.1 scaffold258 98.92 True fake: scaffold gap size wrong estimation (local) 4422498 4490895 1039953 1110070 CM091756.1 scaffold258 97.81 True fake: scaffold gap size wrong estimation (local) 4492846 4497832 1112349 1117337 CM091756.1 scaffold258 99.48 True fake: scaffold gap size wrong estimation (local) 4498015 4563567 1118563 1185283 CM091756.1 scaffold258 98.27 True indel: indel (> 5bp) 4563757 4629357 1185427 1251918 CM091756.1 scaffold258 98.36 True fake: scaffold gap size wrong estimation (local) 4629480 4741571 1252592 1367640 CM091756.1 scaffold258 97.74 True indel: indel (> 5bp) 4741633 4959340 1367714 1587314 CM091756.1 scaffold258 98.76 True fake: not a misassembly (possible transposable element) 4958403 4959474 1588388 1587318 CM091756.1 scaffold258 98.7 True fake: not a misassembly (possible transposable element) 4959565 5121369 1588392 1750346 CM091756.1 scaffold258 99.11 True indel: indel (> 5bp) 5121538 5122416 1750526 1751404 CM091756.1 scaffold258 99.77 True indel: indel (> 5bp) 5122592 5123844 1751605 1752857 CM091756.1 scaffold258 99.92 True indel: indel (> 5bp) 5124239 5125125 1753244 1754130 CM091756.1 scaffold258 99.89 True indel: stretch of mismatches 5125323 5125989 1754328 1754994 CM091756.1 scaffold258 99.7 True local misassembly 5126681 5130907 1755686 1759912 CM091756.1 scaffold258 99.88 True indel: stretch of mismatches 5131102 5132754 1760107 1761759 CM091756.1 scaffold258 99.76 True indel: indel (> 5bp) 5133261 5133907 1762260 1762906 CM091756.1 scaffold258 99.85 True local misassembly 5134993 5136825 1763995 1765827 CM091756.1 scaffold258 99.73 True indel: indel (<= 5bp) 5137134 5140971 1766135 1769972 CM091756.1 scaffold258 99.56 True indel: indel (<= 5bp) 5140972 5141737 1769974 1770739 CM091756.1 scaffold258 99.74 True indel: indel (> 5bp) 5142154 5143266 1771140 1772252 CM091756.1 scaffold258 99.73 True indel: indel (> 5bp) 5143267 5143869 1772261 1772863 CM091756.1 scaffold258 99.83 True local misassembly 5150244 5152102 1774026 1775884 CM091756.1 scaffold258 99.52 True indel: indel (<= 5bp) 5152148 5153487 1775932 1777271 CM091756.1 scaffold258 100.0 True indel: indel (<= 5bp) 5153489 5155872 1777272 1779655 CM091756.1 scaffold258 99.75 True indel: indel (> 5bp) 5156173 5172027 1779983 1795528 CM091756.1 scaffold258 97.41 True indel: indel (<= 5bp) 5172056 5359141 1795562 1983978 CM091756.1 scaffold258 99.03 True local misassembly 5358646 5548979 1983996 2178158 CM091756.1 scaffold258 98.99 True fake: scaffold gap size wrong estimation (local) 5549095 5749597 2178273 2382616 CM091756.1 scaffold258 98.67 True fake: scaffold gap size wrong estimation (local) 5749691 5770463 2382949 2404160 CM091756.1 scaffold258 98.6 True fake: scaffold gap size wrong estimation (local) 5770575 5771215 2404874 2405511 CM091756.1 scaffold258 98.76 True CONTIG scaffold258 2405511 correct 4643872 4657168 13712 818 CM091754.1 scaffold333 96.22 True CONTIG scaffold333 13712 correct CONTIG scaffold336 388 unaligned CONTIG scaffold334 3488 unaligned 1987849 2006073 19044 1316 CM091751.1 scaffold332 96.85 True local misassembly 1958906 1988521 48775 19045 CM091751.1 scaffold332 99.13 True local misassembly 1942083 1956786 66138 49665 CM091751.1 scaffold332 95.26 True fake: scaffold gap size wrong estimation (local) 1939213 1941566 69635 67282 CM091751.1 scaffold332 99.66 True indel: indel (<= 5bp) 1938596 1939211 70251 69636 CM091751.1 scaffold332 99.19 True indel: indel (> 5bp) 1937656 1938166 71198 70688 CM091751.1 scaffold332 99.8 True local misassembly 1936239 1936964 72619 71894 CM091751.1 scaffold332 100.0 True local misassembly 1934082 1935712 74778 73148 CM091751.1 scaffold332 99.69 True local misassembly 1932302 1932903 76566 75965 CM091751.1 scaffold332 99.83 True indel: indel (<= 5bp) 1931148 1932162 77725 76711 CM091751.1 scaffold332 99.61 True indel: indel (<= 5bp) 1929995 1930758 78881 78118 CM091751.1 scaffold332 99.08 True indel: indel (> 5bp) 1928987 1929994 79909 78902 CM091751.1 scaffold332 100.0 True indel: indel (<= 5bp) 1928296 1928986 80601 79911 CM091751.1 scaffold332 98.99 True indel: indel (<= 5bp) 1927518 1928108 81383 80793 CM091751.1 scaffold332 99.66 True indel: indel (> 5bp) 1926071 1927400 82841 81512 CM091751.1 scaffold332 99.85 True indel: indel (> 5bp) 1924893 1926056 84005 82842 CM091751.1 scaffold332 98.8 True indel: indel (<= 5bp) 1921977 1924892 86922 84007 CM091751.1 scaffold332 99.35 True local misassembly 1921138 1921976 87885 87047 CM091751.1 scaffold332 99.88 True indel: indel (<= 5bp) 1920063 1921137 88961 87887 CM091751.1 scaffold332 99.44 True indel: indel (<= 5bp) 1918384 1919762 90642 89264 CM091751.1 scaffold332 99.71 True indel: indel (<= 5bp) 1916849 1918120 92178 90907 CM091751.1 scaffold332 99.14 True indel: indel (> 5bp) 1915844 1916840 93175 92179 CM091751.1 scaffold332 99.2 True local misassembly 1911018 1915152 97619 93485 CM091751.1 scaffold332 99.27 True indel: indel (<= 5bp) 1909727 1911016 98909 97620 CM091751.1 scaffold332 99.92 True indel: indel (<= 5bp) 1907324 1909725 101311 98910 CM091751.1 scaffold332 99.46 True indel: indel (<= 5bp) 1904783 1906887 103850 101746 CM091751.1 scaffold332 99.38 True indel: indel (<= 5bp) 1904131 1904735 104501 103897 CM091751.1 scaffold332 99.83 True local misassembly 1900764 1904130 110309 106943 CM091751.1 scaffold332 99.26 True indel: indel (> 5bp) 1899914 1900763 111171 110322 CM091751.1 scaffold332 99.53 True indel: indel (<= 5bp) 1897894 1899912 113190 111172 CM091751.1 scaffold332 99.41 True indel: indel (> 5bp) 1897345 1897893 113749 113201 CM091751.1 scaffold332 99.45 True local misassembly 1895954 1896524 115150 114580 CM091751.1 scaffold332 99.3 True indel: indel (<= 5bp) 1892591 1895952 118512 115151 CM091751.1 scaffold332 99.49 True fake: scaffold gap size wrong estimation (local) 1886496 1891942 125405 119955 CM091751.1 scaffold332 98.81 True local misassembly 1885125 1885778 126896 126243 CM091751.1 scaffold332 98.78 True CONTIG scaffold332 128503 correct 20910 22843 1 1933 CM091761.1 scaffold337 99.95 True fake: scaffold gap size wrong estimation (local) 22986 25844 2939 5800 CM091761.1 scaffold337 99.83 True fake: scaffold gap size wrong estimation (local) 25964 28206 6244 8486 CM091761.1 scaffold337 99.96 True fake: scaffold gap size wrong estimation (local) 28461 29674 9131 10361 CM091761.1 scaffold337 98.3 True fake: scaffold gap size wrong estimation (local) 29776 36353 10535 17174 CM091761.1 scaffold337 98.8 True CONTIG scaffold337 17174 correct CONTIG scaffold340 364 unaligned 8106925 8109136 3301 1076 CM091767.1 scaffold341 98.47 True CONTIG scaffold341 3650 correct CONTIG scaffold342 393 unaligned 3039275 3041439 2166 1 CM091752.1 scaffold338 99.86 True fake: scaffold gap size wrong estimation (local) 3030568 3037345 11404 4599 CM091752.1 scaffold338 98.58 True fake: scaffold gap size wrong estimation (local) 3026650 3028317 15272 13605 CM091752.1 scaffold338 99.94 True fake: scaffold gap size wrong estimation (local) 3024117 3026518 18340 15932 CM091752.1 scaffold338 98.26 True CONTIG scaffold338 18511 correct 32639 42122 9470 1 CM091753.1 scaffold344 99.62 True local misassembly 32123 33215 10565 9471 CM091753.1 scaffold344 98.72 True fake: scaffold gap size wrong estimation (local) 28649 31074 14260 11848 CM091753.1 scaffold344 97.49 True local misassembly 27883 28437 15801 15247 CM091753.1 scaffold344 100.0 True indel: indel (> 5bp) 25287 27786 18405 15906 CM091753.1 scaffold344 99.4 True CONTIG scaffold344 18405 correct 391571 393694 1 2131 CM091752.1 scaffold331 98.73 True indel: indel (> 5bp) 393766 397398 2229 5864 CM091752.1 scaffold331 98.68 True indel: indel (<= 5bp) 397526 404428 5996 12910 CM091752.1 scaffold331 98.76 True fake: scaffold gap size wrong estimation (local) 405281 406339 13896 14954 CM091752.1 scaffold331 98.77 True indel: indel (> 5bp) 406340 406936 14961 15557 CM091752.1 scaffold331 98.99 True indel: indel (> 5bp) 407026 408499 15654 17127 CM091752.1 scaffold331 99.66 True indel: indel (<= 5bp) 408500 409737 17129 18366 CM091752.1 scaffold331 99.03 True indel: indel (<= 5bp) 409738 410745 18368 19375 CM091752.1 scaffold331 99.5 True indel: indel (<= 5bp) 410746 411263 19377 19894 CM091752.1 scaffold331 99.61 True indel: indel (<= 5bp) 411264 411937 19896 20569 CM091752.1 scaffold331 99.11 True indel: indel (<= 5bp) 412364 412984 20993 21613 CM091752.1 scaffold331 98.55 True local misassembly 413556 415003 22182 23629 CM091752.1 scaffold331 98.0 True local misassembly 415779 416755 25343 26319 CM091752.1 scaffold331 99.39 True indel: indel (> 5bp) 416981 419924 26551 29494 CM091752.1 scaffold331 99.52 True indel: indel (<= 5bp) 419925 420888 29496 30459 CM091752.1 scaffold331 99.27 True indel: indel (<= 5bp) 421293 422832 30869 32408 CM091752.1 scaffold331 99.68 True local misassembly 423876 424629 33486 34239 CM091752.1 scaffold331 99.73 True local misassembly 427008 458097 36460 67638 CM091752.1 scaffold331 96.9 True local misassembly 458723 711978 67994 321253 CM091752.1 scaffold331 98.99 True fake: scaffold gap size wrong estimation (local) 712222 735093 321945 344661 CM091752.1 scaffold331 98.68 True CONTIG scaffold331 345582 correct 3411286 3414406 3146 1 CM091768.1 scaffold346 98.03 True indel: indel (> 5bp) 3409720 3411158 4708 3247 CM091768.1 scaffold346 97.61 True indel: indel (> 5bp) 3408402 3409581 6005 4826 CM091768.1 scaffold346 99.24 True local misassembly 3404202 3405838 8137 6501 CM091768.1 scaffold346 99.69 True indel: indel (> 5bp) 3402695 3404157 9600 8138 CM091768.1 scaffold346 98.77 True local misassembly 3395796 3403155 17274 9974 CM091768.1 scaffold346 98.59 True CONTIG scaffold346 17274 correct 39211 44828 5678 1 CM091755.1 scaffold343 98.8 True indel: indel (> 5bp) 35909 39085 9068 5876 CM091755.1 scaffold343 99.9 True indel: indel (> 5bp) 34778 35849 10210 9139 CM091755.1 scaffold343 99.63 True fake: scaffold gap size wrong estimation (local) 28941 32216 20520 17245 CM091755.1 scaffold343 99.79 True CONTIG scaffold343 20520 correct 4423609 4424448 1 840 CM091768.1 scaffold339 100.0 True indel: indel (> 5bp) 4424449 4429172 857 5580 CM091768.1 scaffold339 99.94 True local misassembly 4429173 4430151 6084 7062 CM091768.1 scaffold339 100.0 True local misassembly 4430152 4431527 8699 10074 CM091768.1 scaffold339 99.93 True indel: indel (<= 5bp) 4431529 4433114 10075 11660 CM091768.1 scaffold339 100.0 True local misassembly 4431729 4433189 11661 13121 CM091768.1 scaffold339 99.93 True fake: scaffold gap size wrong estimation (local) 4433420 4452152 13872 32445 CM091768.1 scaffold339 97.17 True indel: indel (> 5bp) 4452570 4457714 32846 37992 CM091768.1 scaffold339 99.67 True local misassembly 4457922 4465998 38287 46412 CM091768.1 scaffold339 99.53 True relocation, inconsistency = 65762 4390588 4392159 47984 46413 CM091768.1 scaffold339 99.17 True relocation, inconsistency = 161324 4553484 4556215 47985 50715 CM091768.1 scaffold339 99.75 True relocation, inconsistency = -85755 4470461 4480029 50716 60329 CM091768.1 scaffold339 99.14 True CONTIG scaffold339 60329 misassembled 15864196 15866558 1 2359 CM091757.1 scaffold348 96.74 True translocation 14257188 14259289 2360 4453 CM091752.1 scaffold348 97.76 True fake: scaffold gap size wrong estimation (local) 14258179 14258793 4739 5353 CM091752.1 scaffold348 99.19 True local misassembly 14259295 14260361 5566 6632 CM091752.1 scaffold348 99.63 True CONTIG scaffold348 6688 misassembled 2872041 2876007 4015 1 CM091762.1 scaffold349 99.32 True CONTIG scaffold349 4015 correct CONTIG scaffold347 252 unaligned CONTIG scaffold350 597 unaligned 9133246 9146409 13319 1 CM091767.1 scaffold353 98.55 True indel: indel (> 5bp) 9131706 9133014 14871 13543 CM091767.1 scaffold353 98.27 True CONTIG scaffold353 14871 correct 12951109 13033373 82107 1 CM091758.1 scaffold351 99.59 True local misassembly 12907347 12950608 125509 82317 CM091758.1 scaffold351 99.7 True fake: scaffold gap size wrong estimation (local) 12894189 12907129 139029 126069 CM091758.1 scaffold351 99.59 True CONTIG scaffold351 139029 correct 16271675 16288149 16552 1 CM091757.1 scaffold355 99.37 True indel: indel (<= 5bp) 16256367 16271464 31873 16765 CM091757.1 scaffold355 99.91 True fake: scaffold gap size wrong estimation (local) 16250587 16256333 39034 33074 CM091757.1 scaffold355 97.28 True fake: scaffold gap size wrong estimation (local) 16235106 16250108 54179 39156 CM091757.1 scaffold355 99.8 True indel: indel (> 5bp) 16233894 16235030 55440 54284 CM091757.1 scaffold355 99.81 True fake: scaffold gap size wrong estimation (local) 16228274 16233774 61067 55567 CM091757.1 scaffold355 99.96 True translocation 1454713 1460282 66713 61068 CM091764.1 scaffold355 98.41 True CONTIG scaffold355 66713 misassembled 3456384 3516149 72125 11276 CM091753.1 scaffold345 99.66 True local misassembly 3347331 3456160 182739 72614 CM091753.1 scaffold345 99.37 True local misassembly 3326486 3343705 199952 182740 CM091753.1 scaffold345 99.23 True indel: indel (> 5bp) 3325597 3326343 200853 200107 CM091753.1 scaffold345 100.0 True CONTIG scaffold345 200853 correct 10070990 10082188 11203 1 CM091758.1 scaffold324 99.92 True fake: scaffold gap size wrong estimation (local) 9956820 10070769 126796 11926 CM091758.1 scaffold324 99.18 True fake: scaffold gap size wrong estimation (local) 9876121 9956547 208586 127239 CM091758.1 scaffold324 98.68 True fake: scaffold gap size wrong estimation (local) 9866962 9875945 218063 209087 CM091758.1 scaffold324 99.07 True indel: indel (> 5bp) 9827547 9866867 257380 218168 CM091758.1 scaffold324 98.78 True fake: scaffold gap size wrong estimation (local) 9824598 9827820 261029 257802 CM091758.1 scaffold324 98.92 True local misassembly 9806120 9825848 281472 261748 CM091758.1 scaffold324 99.28 True indel: indel (> 5bp) 9769459 9805968 318081 281559 CM091758.1 scaffold324 99.37 True indel: indel (<= 5bp) 9692145 9769293 396375 318246 CM091758.1 scaffold324 98.58 True relocation, inconsistency = 56466 9594063 9635678 437938 396376 CM091758.1 scaffold324 99.12 True indel: indel (> 5bp) 9536764 9593985 495266 438035 CM091758.1 scaffold324 99.45 True indel: indel (> 5bp) 9482510 9536699 549547 495307 CM091758.1 scaffold324 99.29 True indel: indel (> 5bp) 9459877 9482448 572595 549615 CM091758.1 scaffold324 97.86 True indel: indel (> 5bp) 9433497 9459777 599384 572729 CM091758.1 scaffold324 98.91 True relocation, inconsistency = -26315 9433608 9434214 599530 600137 CM091758.1 scaffold324 99.51 True inversion 9429457 9433302 603991 600141 CM091758.1 scaffold324 99.4 True local misassembly 9396940 9429414 636906 604435 CM091758.1 scaffold324 99.32 True local misassembly 9378033 9397931 657498 636907 CM091758.1 scaffold324 99.66 True indel: indel (> 5bp) 9346952 9377998 690061 657523 CM091758.1 scaffold324 97.64 True indel: indel (<= 5bp) 9304892 9346858 732188 690158 CM091758.1 scaffold324 99.26 True local misassembly 9210009 9305703 829413 732190 CM091758.1 scaffold324 99.2 True indel: stretch of mismatches 9161194 9210008 878541 829414 CM091758.1 scaffold324 98.69 True indel: indel (> 5bp) 9151217 9161150 888506 878574 CM091758.1 scaffold324 99.79 True indel: indel (> 5bp) 9137375 9151193 902379 888559 CM091758.1 scaffold324 99.55 True local misassembly 9032993 9137028 1007452 903012 CM091758.1 scaffold324 99.39 True fake: scaffold gap size wrong estimation (local) 8868673 9032769 1174814 1008084 CM091758.1 scaffold324 99.22 True indel: indel (> 5bp) 8626605 8868540 1418123 1174939 CM091758.1 scaffold324 99.2 True fake: not a misassembly (possible transposable element) 17387427 17388386 1419146 1418183 CM091753.1 scaffold324 99.17 True fake: not a misassembly (possible transposable element) 8616518 8626476 1429171 1419213 CM091758.1 scaffold324 99.56 True CONTIG scaffold324 1429177 misassembled CONTIG scaffold358 733 unaligned 12410574 12592350 183676 4 CM091756.1 scaffold357 99.2 True indel: indel (<= 5bp) 12394490 12410483 199756 183766 CM091756.1 scaffold357 99.79 True fake: scaffold gap size wrong estimation (local) 12343293 12394385 251828 200766 CM091756.1 scaffold357 99.59 True indel: indel (> 5bp) 12319903 12342982 275278 252217 CM091756.1 scaffold357 96.71 True local misassembly 12316952 12317599 276340 275693 CM091756.1 scaffold357 99.23 True CONTIG scaffold357 277296 correct 40419 68197 1 27770 CM091761.1 scaffold360 99.73 True relocation, inconsistency = 34097 102295 111644 27771 37112 CM091761.1 scaffold360 99.8 True fake: not a misassembly (possible transposable element) 110723 111794 38266 37197 CM091761.1 scaffold360 99.72 True fake: not a misassembly (possible transposable element) 111795 123597 38267 50066 CM091761.1 scaffold360 99.91 True CONTIG scaffold360 50066 misassembled CONTIG scaffold361 3503 unaligned 13059585 13208886 1 148757 CM091755.1 scaffold352 98.95 True indel: indel (> 5bp) 13209019 13258191 148876 197861 CM091755.1 scaffold352 99.02 True indel: indel (> 5bp) 13258234 13561606 197945 495027 CM091755.1 scaffold352 96.07 True fake: not a misassembly (possible transposable element) 13560608 13561473 495903 495037 CM091755.1 scaffold352 99.19 True fake: not a misassembly (possible transposable element) 13561687 13601915 495904 536152 CM091755.1 scaffold352 99.18 True indel: indel (> 5bp) 13602077 13646602 536267 581230 CM091755.1 scaffold352 98.42 True indel: indel (> 5bp) 13646699 13660316 581355 594974 CM091755.1 scaffold352 99.25 True CONTIG scaffold352 594984 correct 16745103 16745620 518 1 CM091756.1 scaffold363 100.0 True local misassembly 16724953 16742834 20909 2540 CM091756.1 scaffold363 99.35 True CONTIG scaffold363 20909 correct CONTIG scaffold364 377 unaligned CONTIG scaffold365 450 unaligned CONTIG scaffold366 438 unaligned CONTIG scaffold367 368 unaligned 9501848 9524998 23487 1 CM091767.1 scaffold368 98.48 True relocation, scaffold gap is present, inconsistency = 256005 9243415 9245444 23886 25911 CM091767.1 scaffold368 99.46 True CONTIG scaffold368 25911 misassembled CONTIG scaffold362 1321 unaligned 8640926 8665397 25046 1 CM091767.1 scaffold369 99.16 True CONTIG scaffold369 25046 correct CONTIG scaffold371 344 unaligned CONTIG scaffold372 406 unaligned 16190777 16191716 329 1268 CM091753.1 scaffold373 98.38 True relocation, inconsistency = 10264 16201981 16220825 1269 20122 CM091753.1 scaffold373 98.71 True local misassembly 16220089 16224340 20123 24377 CM091753.1 scaffold373 99.04 True fake: scaffold gap size wrong estimation (local) 16226677 16229880 24960 28175 CM091753.1 scaffold373 98.17 True indel: indel (> 5bp) 16229927 16234593 28215 32882 CM091753.1 scaffold373 97.74 True local misassembly 16233887 16235508 32958 34577 CM091753.1 scaffold373 97.23 True indel: indel (<= 5bp) 16235667 16238367 34738 37463 CM091753.1 scaffold373 95.99 True indel: indel (> 5bp) 16238430 16285045 37560 86064 CM091753.1 scaffold373 99.07 True local misassembly 16283883 16372585 86073 174830 CM091753.1 scaffold373 99.25 True indel: indel (> 5bp) 16372835 16434853 175024 237252 CM091753.1 scaffold373 99.22 True indel: indel (> 5bp) 16434905 16439110 237319 241527 CM091753.1 scaffold373 99.33 True indel: indel (> 5bp) 16439291 16509246 241627 311538 CM091753.1 scaffold373 99.18 True local misassembly 16508468 16569843 311539 373562 CM091753.1 scaffold373 98.6 True CONTIG scaffold373 373573 misassembled 1367688 1385312 1 17661 CM091763.1 scaffold359 99.74 True fake: scaffold gap size wrong estimation (local) 1386038 1480973 18234 113866 CM091763.1 scaffold359 99.5 True local misassembly 1481106 1507604 114393 141216 CM091763.1 scaffold359 99.65 True fake: scaffold gap size wrong estimation (local) 1508165 1526016 142407 160798 CM091763.1 scaffold359 99.92 True fake: scaffold gap size wrong estimation (local) 1526713 1785841 161580 423955 CM091763.1 scaffold359 98.92 True local misassembly 1785070 1800410 423956 439166 CM091763.1 scaffold359 98.43 True indel: indel (> 5bp) 1800581 1823165 439365 462376 CM091763.1 scaffold359 97.62 True indel: indel (> 5bp) 1823485 1823986 462706 463207 CM091763.1 scaffold359 99.6 True local misassembly 1824685 1827263 463896 466474 CM091763.1 scaffold359 99.65 True indel: indel (<= 5bp) 1827265 1828708 466475 467918 CM091763.1 scaffold359 99.52 True local misassembly 1835164 1838326 468024 471186 CM091763.1 scaffold359 99.84 True indel: indel (<= 5bp) 1838385 1840209 471247 473071 CM091763.1 scaffold359 99.95 True fake: scaffold gap size wrong estimation (local) 1840708 1841257 473666 474215 CM091763.1 scaffold359 100.0 True local misassembly 1841758 1859700 474338 492303 CM091763.1 scaffold359 99.44 True fake: scaffold gap size wrong estimation (local) 1859801 1860588 492753 493540 CM091763.1 scaffold359 99.75 True fake: scaffold gap size wrong estimation (local) 1862402 1864164 495795 497600 CM091763.1 scaffold359 95.85 True fake: scaffold gap size wrong estimation (local) 1864715 1865721 498440 499461 CM091763.1 scaffold359 99.49 True CONTIG scaffold359 499461 correct 14244319 14245472 1 1168 CM091755.1 scaffold370 97.95 True fake: scaffold gap size wrong estimation (local) 14246433 14288694 2480 45053 CM091755.1 scaffold370 98.27 True indel: indel (> 5bp) 14288741 14296177 45117 52606 CM091755.1 scaffold370 98.33 True indel: indel (> 5bp) 14296405 14437719 52840 197455 CM091755.1 scaffold370 98.98 True indel: indel (> 5bp) 14438011 14621688 197766 381813 CM091755.1 scaffold370 99.52 True fake: scaffold gap size wrong estimation (local) 14621783 14653973 382579 416724 CM091755.1 scaffold370 99.11 True fake: scaffold gap size wrong estimation (local) 14654075 14655117 416837 417886 CM091755.1 scaffold370 99.05 True fake: scaffold gap size wrong estimation (local) 14655700 14658136 419068 421559 CM091755.1 scaffold370 99.71 True fake: scaffold gap size wrong estimation (local) 14658319 14664913 422130 428830 CM091755.1 scaffold370 98.54 True indel: indel (<= 5bp) 14664965 14679583 428883 444605 CM091755.1 scaffold370 97.17 True local misassembly 14678590 14705251 444606 471842 CM091755.1 scaffold370 98.3 True indel: indel (> 5bp) 14705287 14717737 471895 484365 CM091755.1 scaffold370 99.01 True local misassembly 14717795 14776175 485583 546323 CM091755.1 scaffold370 99.25 True fake: scaffold gap size wrong estimation (local) 14776317 14784049 546473 554915 CM091755.1 scaffold370 99.44 True fake: scaffold gap size wrong estimation (local) 14784800 14786111 556038 557348 CM091755.1 scaffold370 99.76 True fake: scaffold gap size wrong estimation (local) 14786323 14787599 557716 558992 CM091755.1 scaffold370 99.69 True indel: indel (> 5bp) 14787600 14788172 559001 559573 CM091755.1 scaffold370 99.83 True fake: scaffold gap size wrong estimation (local) 14788538 14789380 559963 560805 CM091755.1 scaffold370 100.0 True local misassembly 14789829 14790647 561797 562615 CM091755.1 scaffold370 100.0 True indel: indel (> 5bp) 14790788 14791338 562744 563294 CM091755.1 scaffold370 100.0 True indel: indel (<= 5bp) 14791757 14794703 563715 566661 CM091755.1 scaffold370 99.9 True local misassembly 14796222 14797181 568193 569152 CM091755.1 scaffold370 99.17 True fake: scaffold gap size wrong estimation (local) 14798148 14806328 570889 579333 CM091755.1 scaffold370 95.84 True fake: scaffold gap size wrong estimation (local) 14806722 14813035 580280 586635 CM091755.1 scaffold370 99.34 True fake: scaffold gap size wrong estimation (local) 14813162 14816964 587659 591463 CM091755.1 scaffold370 99.13 True fake: scaffold gap size wrong estimation (local) 14817292 14820818 592169 595686 CM091755.1 scaffold370 99.29 True fake: scaffold gap size wrong estimation (local) 14821439 14830754 596900 606227 CM091755.1 scaffold370 99.65 True indel: indel (<= 5bp) 14830807 14837746 606279 613261 CM091755.1 scaffold370 99.0 True indel: indel (> 5bp) 14837927 14907726 613501 683863 CM091755.1 scaffold370 98.62 True indel: indel (> 5bp) 14907778 14908621 683970 684814 CM091755.1 scaffold370 99.17 True indel: indel (<= 5bp) 14908695 14924589 684891 702220 CM091755.1 scaffold370 96.96 True indel: indel (<= 5bp) 14924711 14941878 702341 721008 CM091755.1 scaffold370 97.15 True CONTIG scaffold370 721008 correct 12220098 12238710 1 18740 CM091759.1 scaffold374 98.56 True local misassembly 12238846 12398521 19011 178593 CM091759.1 scaffold374 99.6 True fake: not a misassembly (possible transposable element) 12397232 12398246 179610 178598 CM091759.1 scaffold374 99.51 True fake: not a misassembly (possible transposable element) 12398940 12414205 179611 194877 CM091759.1 scaffold374 99.47 True indel: indel (<= 5bp) 12414283 12433804 194952 214494 CM091759.1 scaffold374 99.51 True local misassembly 12434113 12494089 215420 276044 CM091759.1 scaffold374 98.67 True CONTIG scaffold374 276044 correct 161011 183396 22551 1 CM091753.1 scaffold377 98.88 True CONTIG scaffold377 22880 correct CONTIG scaffold376 420 unaligned 2943464 2964777 21934 508 CM091752.1 scaffold379 99.19 True indel: indel (> 5bp) 2941065 2943334 24333 22053 CM091752.1 scaffold379 99.08 True CONTIG scaffold379 24333 correct 5015397 5017121 1724 1 CM091768.1 scaffold335 98.15 True relocation, scaffold gap is present, inconsistency = 917647 4081535 4097304 17846 2170 CM091768.1 scaffold335 98.7 True fake: scaffold gap size wrong estimation (local) 4079478 4081530 26558 24506 CM091768.1 scaffold335 99.95 True local misassembly 4078392 4079477 27926 26841 CM091768.1 scaffold335 100.0 True indel: indel (> 5bp) 4073684 4078080 32656 28260 CM091768.1 scaffold335 100.0 True fake: scaffold gap size wrong estimation (local) 4073071 4073587 33481 32965 CM091768.1 scaffold335 100.0 True local misassembly 4042910 4072460 64428 34097 CM091768.1 scaffold335 98.42 True fake: scaffold gap size wrong estimation (local) 4033997 4042804 73662 64777 CM091768.1 scaffold335 99.76 True fake: scaffold gap size wrong estimation (local) 3945459 4033848 162479 73833 CM091768.1 scaffold335 99.86 True CONTIG scaffold335 162479 misassembled 15635281 15635973 779 75 CM091752.1 scaffold381 97.88 True CONTIG scaffold381 779 correct 1116946 1118902 1957 1 CM091755.1 scaffold380 99.85 True fake: scaffold gap size wrong estimation (local) 1111888 1116752 7074 2132 CM091755.1 scaffold380 99.08 True local misassembly 1072066 1111005 48395 8616 CM091755.1 scaffold380 99.77 True fake: scaffold gap size wrong estimation (local) 1065708 1071979 54873 48487 CM091755.1 scaffold380 98.14 True fake: scaffold gap size wrong estimation (local) 1040865 1065257 79996 55580 CM091755.1 scaffold380 99.86 True fake: scaffold gap size wrong estimation (local) 970445 1040514 152358 80438 CM091755.1 scaffold380 98.1 True fake: not a misassembly (possible transposable element) 17203687 17204449 152585 153346 CM091752.1 scaffold380 97.9 True fake: not a misassembly (possible transposable element) 962798 969732 160903 153966 CM091755.1 scaffold380 99.91 True CONTIG scaffold380 160903 correct 4700591 4764279 172 64872 CM091754.1 scaffold375 98.14 True fake: scaffold gap size wrong estimation (local) 4764580 4769464 65950 70834 CM091754.1 scaffold375 99.94 True CONTIG scaffold375 70834 correct CONTIG scaffold383 1059 unaligned CONTIG scaffold384 740 unaligned CONTIG scaffold386 740 unaligned 4910766 4912038 1273 1 CM091768.1 scaffold385 100.0 True fake: scaffold gap size wrong estimation (local) 4908212 4910250 4100 2062 CM091768.1 scaffold385 100.0 True CONTIG scaffold385 4100 correct CONTIG scaffold387 658 unaligned CONTIG scaffold388 282 unaligned 11427275 11444684 1 17526 CM091765.1 scaffold389 99.12 True CONTIG scaffold389 17841 correct 31473 32400 35 962 CM091758.1 scaffold285 99.89 True indel: indel (<= 5bp) 32572 33907 1131 2466 CM091758.1 scaffold285 99.7 True indel: indel (<= 5bp) 33908 34465 2468 3025 CM091758.1 scaffold285 99.82 True indel: indel (<= 5bp) 34467 34975 3026 3534 CM091758.1 scaffold285 99.8 True local misassembly 35997 37892 3535 5430 CM091758.1 scaffold285 99.89 True indel: indel (<= 5bp) 38225 39364 5768 6907 CM091758.1 scaffold285 99.91 True local misassembly 39390 85402 7476 54382 CM091758.1 scaffold285 99.74 True fake: scaffold gap size wrong estimation (local) 85495 164010 54972 133558 CM091758.1 scaffold285 99.72 True fake: scaffold gap size wrong estimation (local) 164103 164657 134222 134776 CM091758.1 scaffold285 100.0 True fake: scaffold gap size wrong estimation (local) 164858 165649 134956 135746 CM091758.1 scaffold285 99.49 True fake: scaffold gap size wrong estimation (local) 165873 265972 136750 238484 CM091758.1 scaffold285 97.7 True fake: scaffold gap size wrong estimation (local) 266087 314951 238844 288184 CM091758.1 scaffold285 99.31 True fake: scaffold gap size wrong estimation (local) 315378 333262 288965 307394 CM091758.1 scaffold285 99.43 True indel: indel (> 5bp) 333354 359162 307439 333597 CM091758.1 scaffold285 99.28 True fake: scaffold gap size wrong estimation (local) 359347 508571 334330 488148 CM091758.1 scaffold285 98.2 True indel: indel (<= 5bp) 508755 705020 488333 684627 CM091758.1 scaffold285 99.84 True indel: indel (> 5bp) 705046 717058 684675 696676 CM091758.1 scaffold285 99.23 True fake: scaffold gap size wrong estimation (local) 717168 834415 696776 820841 CM091758.1 scaffold285 98.63 True fake: scaffold gap size wrong estimation (local) 834979 840249 821693 827575 CM091758.1 scaffold285 99.75 True fake: scaffold gap size wrong estimation (local) 840373 866370 827740 856632 CM091758.1 scaffold285 97.12 True local misassembly 865363 898966 856633 892507 CM091758.1 scaffold285 99.52 True fake: scaffold gap size wrong estimation (local) 899063 903483 893296 897929 CM091758.1 scaffold285 99.03 True fake: scaffold gap size wrong estimation (local) 903666 907232 898522 902089 CM091758.1 scaffold285 99.38 True local misassembly 908028 908773 902887 903632 CM091758.1 scaffold285 99.46 True indel: indel (<= 5bp) 908774 909339 903634 904199 CM091758.1 scaffold285 100.0 True local misassembly 911017 911752 906356 907091 CM091758.1 scaffold285 99.59 True indel: stretch of mismatches 911772 912721 907111 908060 CM091758.1 scaffold285 99.68 True fake: scaffold gap size wrong estimation (local) 913886 914496 909536 910146 CM091758.1 scaffold285 100.0 True indel: stretch of mismatches 914921 916000 910571 911650 CM091758.1 scaffold285 99.91 True indel: indel (> 5bp) 916088 1032012 911732 1035255 CM091758.1 scaffold285 98.62 True fake: scaffold gap size wrong estimation (local) 1033023 1103991 1036381 1110663 CM091758.1 scaffold285 98.91 True relocation, scaffold gap is present, inconsistency = 39517 1144166 1280757 1111321 1249420 CM091758.1 scaffold285 99.3 True local misassembly 1279514 1291516 1249421 1261717 CM091758.1 scaffold285 98.65 True fake: scaffold gap size wrong estimation (local) 1296263 1298359 1262554 1264659 CM091758.1 scaffold285 99.19 True fake: scaffold gap size wrong estimation (local) 1298349 1331877 1264798 1298511 CM091758.1 scaffold285 97.92 True local misassembly 1332145 1396735 1299221 1364813 CM091758.1 scaffold285 99.28 True local misassembly 1395464 1408881 1365278 1378701 CM091758.1 scaffold285 99.35 True fake: scaffold gap size wrong estimation (local) 1409763 1443103 1380044 1413413 CM091758.1 scaffold285 99.3 True indel: indel (<= 5bp) 1443163 1473008 1413477 1442930 CM091758.1 scaffold285 98.06 True indel: indel (> 5bp) 1473065 1481979 1443039 1451950 CM091758.1 scaffold285 99.41 True fake: scaffold gap size wrong estimation (local) 1481993 1540769 1452562 1511962 CM091758.1 scaffold285 98.39 True indel: indel (<= 5bp) 1540823 1551806 1512014 1522991 CM091758.1 scaffold285 99.25 True fake: scaffold gap size wrong estimation (local) 1552551 1657942 1524236 1631443 CM091758.1 scaffold285 99.38 True local misassembly 1658927 1761454 1632501 1738562 CM091758.1 scaffold285 98.85 True indel: indel (<= 5bp) 1761460 1802440 1738571 1779543 CM091758.1 scaffold285 99.55 True local misassembly 1801253 1807507 1779564 1785819 CM091758.1 scaffold285 99.7 True indel: indel (> 5bp) 1807533 1974510 1785875 1955914 CM091758.1 scaffold285 98.6 True fake: scaffold gap size wrong estimation (local) 1974754 1988202 1956500 1970820 CM091758.1 scaffold285 96.71 True indel: indel (<= 5bp) 1988245 2111073 1970867 2094691 CM091758.1 scaffold285 99.64 True indel: indel (> 5bp) 2111189 2116347 2094815 2099962 CM091758.1 scaffold285 99.34 True local misassembly 2116676 2138384 2100485 2122199 CM091758.1 scaffold285 99.54 True fake: scaffold gap size wrong estimation (local) 2138597 2201533 2122543 2186742 CM091758.1 scaffold285 99.33 True indel: indel (> 5bp) 2201557 2382737 2186788 2371254 CM091758.1 scaffold285 99.32 True fake: not a misassembly (possible transposable element) 41160 41844 2371981 2371297 CM091767.1 scaffold285 100.0 True fake: not a misassembly (possible transposable element) 2382808 2703012 2371982 2696954 CM091758.1 scaffold285 99.25 True local misassembly 2704676 2707303 2698088 2700735 CM091758.1 scaffold285 98.75 True CONTIG scaffold285 2700735 misassembled 15739370 15741631 2262 1 CM091757.1 scaffold392 100.0 True fake: not a misassembly (possible transposable element) 3639540 3640104 2263 2828 CM091768.1 scaffold392 97.88 True fake: not a misassembly (possible transposable element) 15736881 15738970 5515 3426 CM091757.1 scaffold392 99.9 True fake: scaffold gap size wrong estimation (local) 15736880 15738189 7559 6237 CM091757.1 scaffold392 98.94 True local misassembly 15732973 15734116 8703 7560 CM091757.1 scaffold392 99.48 True CONTIG scaffold392 8703 correct 13304104 13305248 1 1145 CM091758.1 scaffold393 99.83 True CONTIG scaffold393 1145 correct CONTIG scaffold394 383 unaligned 8419645 8443867 1 24413 CM091767.1 scaffold395 99.12 True indel: indel (> 5bp) 8443891 8449525 24446 30107 CM091767.1 scaffold395 99.88 True local misassembly 8448324 8472850 30452 54869 CM091767.1 scaffold395 98.64 True fake: scaffold gap size wrong estimation (local) 8473360 8474171 55824 56637 CM091767.1 scaffold395 98.28 True CONTIG scaffold395 56770 correct 915996 1043775 129900 1 CM091765.1 scaffold390 98.85 True fake: scaffold gap size wrong estimation (local) 651581 915581 397002 131212 CM091765.1 scaffold390 99.02 True indel: indel (> 5bp) 640981 651526 407930 397040 CM091765.1 scaffold390 96.39 True local misassembly 616663 641985 435887 407977 CM091765.1 scaffold390 98.83 True fake: scaffold gap size wrong estimation (local) 388859 616489 665875 436911 CM091765.1 scaffold390 99.23 True fake: scaffold gap size wrong estimation (local) 273382 388613 782982 666993 CM091765.1 scaffold390 99.0 True local misassembly 260570 273353 796199 783400 CM091765.1 scaffold390 99.55 True fake: scaffold gap size wrong estimation (local) 78157 260454 983902 796743 CM091765.1 scaffold390 98.43 True local misassembly 55591 77942 1007547 984438 CM091765.1 scaffold390 99.83 True indel: indel (> 5bp) 49958 55297 1013191 1007860 CM091765.1 scaffold390 99.12 True local misassembly 20140 49770 1043746 1013260 CM091765.1 scaffold390 99.06 True CONTIG scaffold390 1045588 correct 6290384 6300215 1 9819 CM091768.1 scaffold397 99.81 True local misassembly 6301120 6303559 10122 12561 CM091768.1 scaffold397 100.0 True CONTIG scaffold397 12561 correct CONTIG scaffold398 676 unaligned CONTIG scaffold399 336 unaligned CONTIG scaffold400 326 unaligned CONTIG scaffold401 405 unaligned CONTIG scaffold402 352 unaligned CONTIG scaffold403 619 unaligned 3535934 3537518 1 1585 CM091759.1 scaffold356 98.3 True indel: indel (> 5bp) 3537548 3553970 1635 18092 CM091759.1 scaffold356 99.42 True fake: scaffold gap size wrong estimation (local) 3555854 3557412 19361 20919 CM091759.1 scaffold356 98.85 True local misassembly 3556385 3557870 21464 22951 CM091759.1 scaffold356 98.72 True fake: scaffold gap size wrong estimation (local) 3557955 3615961 23049 83057 CM091759.1 scaffold356 98.56 True fake: scaffold gap size wrong estimation (local) 3615764 3802180 84093 274451 CM091759.1 scaffold356 98.73 True indel: indel (> 5bp) 3802202 3842622 274529 315483 CM091759.1 scaffold356 99.02 True indel: indel (> 5bp) 3842757 3852077 315589 324958 CM091759.1 scaffold356 98.51 True indel: indel (<= 5bp) 3852122 3873221 324999 346244 CM091759.1 scaffold356 98.51 True local misassembly 3872300 3898660 346245 373304 CM091759.1 scaffold356 98.79 True indel: indel (> 5bp) 3898741 3904824 373417 379528 CM091759.1 scaffold356 98.94 True fake: scaffold gap size wrong estimation (local) 3905049 3922260 379716 396681 CM091759.1 scaffold356 97.26 True indel: indel (> 5bp) 3922284 3932074 396736 406564 CM091759.1 scaffold356 98.94 True local misassembly 3932517 3994399 406709 469342 CM091759.1 scaffold356 99.24 True indel: indel (> 5bp) 3994460 4020857 469425 495801 CM091759.1 scaffold356 99.23 True fake: scaffold gap size wrong estimation (local) 4022125 4047568 497352 522794 CM091759.1 scaffold356 99.21 True fake: scaffold gap size wrong estimation (local) 4047904 4055208 523384 530739 CM091759.1 scaffold356 98.7 True indel: indel (> 5bp) 4055450 4117730 530992 594309 CM091759.1 scaffold356 97.99 True local misassembly 4117840 4215813 594698 693774 CM091759.1 scaffold356 99.3 True fake: scaffold gap size wrong estimation (local) 4216031 4230302 695027 709698 CM091759.1 scaffold356 99.59 True fake: scaffold gap size wrong estimation (local) 4230481 4241519 710336 721378 CM091759.1 scaffold356 98.99 True fake: scaffold gap size wrong estimation (local) 4241640 4251245 722385 731906 CM091759.1 scaffold356 98.98 True fake: scaffold gap size wrong estimation (local) 4251379 4378137 732160 859119 CM091759.1 scaffold356 98.68 True indel: indel (> 5bp) 4378501 4439798 859439 921087 CM091759.1 scaffold356 98.49 True indel: indel (> 5bp) 4439845 4440418 921158 921731 CM091759.1 scaffold356 100.0 True indel: indel (<= 5bp) 4440522 4441398 921837 922713 CM091759.1 scaffold356 99.89 True local misassembly 4441856 4442782 923995 924921 CM091759.1 scaffold356 99.57 True local misassembly 4443293 4444359 926084 927150 CM091759.1 scaffold356 98.88 True local misassembly 4446008 4446527 928819 929338 CM091759.1 scaffold356 98.85 True indel: indel (<= 5bp) 4446532 4447601 929339 930408 CM091759.1 scaffold356 99.72 True indel: indel (<= 5bp) 4447605 4448143 930409 930947 CM091759.1 scaffold356 99.07 True indel: indel (> 5bp) 4448579 4450383 931375 933179 CM091759.1 scaffold356 99.83 True indel: indel (<= 5bp) 4450796 4451333 933589 934126 CM091759.1 scaffold356 99.44 True indel: indel (<= 5bp) 4451334 4453230 934128 936024 CM091759.1 scaffold356 99.1 True indel: indel (<= 5bp) 4453232 4454090 936025 936883 CM091759.1 scaffold356 99.42 True indel: indel (<= 5bp) 4454092 4454811 936884 937603 CM091759.1 scaffold356 100.0 True fake: scaffold gap size wrong estimation (local) 4456853 4457509 940654 941310 CM091759.1 scaffold356 100.0 True local misassembly 4458145 4458652 941944 942451 CM091759.1 scaffold356 99.21 True indel: stretch of mismatches 4459093 4461450 942892 945249 CM091759.1 scaffold356 99.58 True local misassembly 4461451 4462005 945464 946018 CM091759.1 scaffold356 99.28 True local misassembly 4463193 4464328 947205 948340 CM091759.1 scaffold356 99.3 True local misassembly 4463979 4472219 948603 956948 CM091759.1 scaffold356 97.58 True local misassembly 4471235 4476671 956949 962464 CM091759.1 scaffold356 97.97 True indel: indel (> 5bp) 4476702 4494019 962514 979830 CM091759.1 scaffold356 98.89 True indel: indel (> 5bp) 4494065 4577204 979870 1065308 CM091759.1 scaffold356 98.94 True local misassembly 4577376 4601980 1065377 1089977 CM091759.1 scaffold356 99.56 True fake: scaffold gap size wrong estimation (local) 4602156 4618540 1090796 1108108 CM091759.1 scaffold356 99.23 True fake: scaffold gap size wrong estimation (local) 4619659 4631569 1109735 1121644 CM091759.1 scaffold356 99.31 True fake: scaffold gap size wrong estimation (local) 4631936 4639332 1121933 1129541 CM091759.1 scaffold356 98.54 True fake: scaffold gap size wrong estimation (local) 4639817 4651025 1129944 1141655 CM091759.1 scaffold356 95.91 True fake: scaffold gap size wrong estimation (local) 4651212 4727994 1141846 1219978 CM091759.1 scaffold356 99.29 True fake: scaffold gap size wrong estimation (local) 4728105 4764544 1220867 1257064 CM091759.1 scaffold356 98.91 True indel: indel (> 5bp) 4764651 4871567 1257195 1364448 CM091759.1 scaffold356 99.04 True fake: scaffold gap size wrong estimation (local) 4871663 4889838 1365212 1383866 CM091759.1 scaffold356 96.6 True fake: scaffold gap size wrong estimation (local) 4891154 4906066 1385304 1400230 CM091759.1 scaffold356 99.46 True indel: indel (> 5bp) 4906100 5207446 1400272 1705696 CM091759.1 scaffold356 99.44 True indel: indel (> 5bp) 5207491 5482813 1705719 1979583 CM091759.1 scaffold356 97.79 True fake: scaffold gap size wrong estimation (local) 5482896 5568036 1980227 2065373 CM091759.1 scaffold356 99.72 True indel: indel (<= 5bp) 5568039 5614703 2065374 2113378 CM091759.1 scaffold356 98.0 True indel: indel (> 5bp) 5614851 5675685 2113538 2175794 CM091759.1 scaffold356 99.7 True fake: scaffold gap size wrong estimation (local) 5675936 5841906 2176774 2344772 CM091759.1 scaffold356 99.12 True fake: scaffold gap size wrong estimation (local) 5842323 5842943 2345697 2346326 CM091759.1 scaffold356 98.41 True fake: scaffold gap size wrong estimation (local) 5843235 5844449 2349630 2350844 CM091759.1 scaffold356 99.84 True fake: scaffold gap size wrong estimation (local) 5844686 5849168 2351536 2356026 CM091759.1 scaffold356 98.93 True fake: scaffold gap size wrong estimation (local) 5849787 5854360 2357054 2361637 CM091759.1 scaffold356 99.43 True indel: indel (> 5bp) 5854468 5951923 2361754 2461980 CM091759.1 scaffold356 99.4 True fake: scaffold gap size wrong estimation (local) 5952104 6027311 2463010 2540151 CM091759.1 scaffold356 99.23 True fake: scaffold gap size wrong estimation (local) 6027409 6061041 2540236 2575510 CM091759.1 scaffold356 99.33 True fake: scaffold gap size wrong estimation (local) 6061298 6062044 2576436 2577182 CM091759.1 scaffold356 100.0 True CONTIG scaffold356 2577182 correct CONTIG scaffold405 420 unaligned 3366719 3373331 1 6639 CM091752.1 scaffold406 99.32 True indel: indel (> 5bp) 3373413 3378485 6745 11883 CM091752.1 scaffold406 98.31 True indel: indel (> 5bp) 3378682 3380245 12051 13613 CM091752.1 scaffold406 99.62 True indel: indel (> 5bp) 3380410 3386498 13792 19849 CM091752.1 scaffold406 99.46 True CONTIG scaffold406 19849 correct CONTIG scaffold407 1234 unaligned CONTIG scaffold404 3977 unaligned CONTIG scaffold409 434 unaligned CONTIG scaffold408 1222 unaligned CONTIG scaffold411 1069 unaligned 13911045 13928643 17881 1 CM091756.1 scaffold382 99.47 True indel: indel (> 5bp) 13870867 13910699 58128 18184 CM091756.1 scaffold382 99.18 True fake: not a misassembly (possible transposable element) 12332789 12334112 58189 59512 CM091757.1 scaffold382 99.62 True fake: not a misassembly (possible transposable element) 13799461 13870561 131965 59513 CM091756.1 scaffold382 98.67 True local misassembly 13779828 13799408 151769 132135 CM091756.1 scaffold382 99.42 True fake: scaffold gap size wrong estimation (local) 13778054 13779645 153554 151950 CM091756.1 scaffold382 99.43 True indel: indel (> 5bp) 13709714 13777878 221702 153780 CM091756.1 scaffold382 99.18 True local misassembly 13604808 13708186 327557 224168 CM091756.1 scaffold382 99.79 True fake: scaffold gap size wrong estimation (local) 13171623 13604691 763923 328313 CM091756.1 scaffold382 99.48 True indel: indel (> 5bp) 13170257 13171557 765310 764010 CM091756.1 scaffold382 99.46 True local misassembly 13168239 13170229 767987 765997 CM091756.1 scaffold382 99.2 True local misassembly 13166189 13167403 770087 768872 CM091756.1 scaffold382 99.42 True indel: indel (> 5bp) 13106287 13166128 830408 770156 CM091756.1 scaffold382 97.98 True indel: indel (> 5bp) 13094602 13106245 842157 830476 CM091756.1 scaffold382 98.82 True indel: indel (> 5bp) 12931885 13094466 1005234 842257 CM091756.1 scaffold382 99.07 True local misassembly 12881235 12932695 1056650 1005235 CM091756.1 scaffold382 99.29 True fake: scaffold gap size wrong estimation (local) 12720146 12881688 1218990 1057107 CM091756.1 scaffold382 99.09 True local misassembly 12676735 12720855 1263555 1218991 CM091756.1 scaffold382 97.62 True local misassembly 12592396 12676678 1347964 1264067 CM091756.1 scaffold382 98.31 True CONTIG scaffold382 1347966 correct 8769870 8771127 30 1287 CM091767.1 scaffold413 100.0 True fake: scaffold gap size wrong estimation (local) 8771104 8778621 1989 9506 CM091767.1 scaffold413 99.95 True CONTIG scaffold413 11962 correct CONTIG scaffold414 572 unaligned CONTIG scaffold415 721 unaligned CONTIG scaffold416 649 unaligned CONTIG scaffold417 357 unaligned 11057450 11058171 1 734 CM091765.1 scaffold418 98.23 True CONTIG scaffold418 734 correct 6316544 6318025 1471 1 CM091762.1 scaffold419 98.52 True local misassembly 6241474 6317844 79310 1472 CM091762.1 scaffold419 99.04 True local misassembly 6191980 6241390 129909 79701 CM091762.1 scaffold419 97.95 True fake: scaffold gap size wrong estimation (local) 6188321 6192173 134966 131118 CM091762.1 scaffold419 98.94 True indel: indel (<= 5bp) 6107038 6188220 216954 135070 CM091762.1 scaffold419 98.54 True CONTIG scaffold419 220788 correct 3392774 3394166 1402 10 CM091768.1 scaffold420 99.93 True fake: scaffold gap size wrong estimation (local) 3372120 3392292 21727 1496 CM091768.1 scaffold420 98.92 True CONTIG scaffold420 21727 correct CONTIG scaffold421 434 unaligned 8148205 8299146 153161 56 CM091765.1 scaffold378 99.32 True indel: indel (> 5bp) 8092177 8148125 209841 153268 CM091765.1 scaffold378 99.04 True indel: indel (> 5bp) 7986019 8092141 318260 209896 CM091765.1 scaffold378 98.96 True fake: scaffold gap size wrong estimation (extensive) 7908775 7975683 386270 319032 CM091765.1 scaffold378 99.26 True fake: not a misassembly (possible transposable element) 16017009 16017793 387054 386271 CM091752.1 scaffold378 97.77 True fake: not a misassembly (possible transposable element) 7908450 7909007 387610 387055 CM091765.1 scaffold378 98.57 True fake: scaffold gap size wrong estimation (local) 7906833 7908370 389300 387708 CM091765.1 scaffold378 95.92 True fake: scaffold gap size wrong estimation (local) 7798450 7906586 499303 389470 CM091765.1 scaffold378 98.88 True indel: indel (> 5bp) 7783140 7798352 514650 499419 CM091765.1 scaffold378 99.3 True local misassembly 7761052 7783076 537457 515472 CM091765.1 scaffold378 99.12 True relocation, scaffold gap is present, inconsistency = 46766 7690218 7713592 560846 538151 CM091765.1 scaffold378 95.77 True fake: scaffold gap size wrong estimation (local) 7644665 7689895 607010 561401 CM091765.1 scaffold378 98.53 True fake: scaffold gap size wrong estimation (local) 7626904 7643976 625016 608174 CM091765.1 scaffold378 97.23 True indel: indel (> 5bp) 7536758 7626876 715019 625056 CM091765.1 scaffold378 97.79 True indel: indel (> 5bp) 7481809 7536723 770593 715080 CM091765.1 scaffold378 99.54 True indel: indel (<= 5bp) 7387191 7481647 866246 770759 CM091765.1 scaffold378 99.08 True local misassembly 7359621 7388133 896280 866247 CM091765.1 scaffold378 97.55 True fake: scaffold gap size wrong estimation (local) 7251353 7358971 1009190 897181 CM091765.1 scaffold378 99.15 True indel: indel (> 5bp) 7248889 7251154 1011700 1009398 CM091765.1 scaffold378 98.13 True local misassembly 7233464 7247193 1027546 1013025 CM091765.1 scaffold378 97.53 True indel: indel (> 5bp) 7207713 7233355 1053975 1027672 CM091765.1 scaffold378 99.52 True local misassembly 7142405 7207231 1121780 1054693 CM091765.1 scaffold378 99.52 True indel: indel (<= 5bp) 7137894 7142361 1126297 1121829 CM091765.1 scaffold378 99.87 True fake: scaffold gap size wrong estimation (local) 7110111 7137038 1156884 1127562 CM091765.1 scaffold378 99.25 True fake: scaffold gap size wrong estimation (local) 7098032 7109690 1169583 1157569 CM091765.1 scaffold378 98.9 True fake: scaffold gap size wrong estimation (local) 7096899 7097605 1171028 1170322 CM091765.1 scaffold378 99.29 True indel: indel (> 5bp) 7096373 7096883 1171545 1171035 CM091765.1 scaffold378 99.02 True indel: indel (<= 5bp) 7095766 7096357 1172154 1171563 CM091765.1 scaffold378 99.66 True indel: indel (<= 5bp) 7095190 7095763 1172728 1172155 CM091765.1 scaffold378 100.0 True indel: indel (<= 5bp) 7094532 7095146 1173385 1172771 CM091765.1 scaffold378 100.0 True indel: indel (<= 5bp) 7093546 7094531 1174372 1173387 CM091765.1 scaffold378 100.0 True indel: indel (<= 5bp) 7090987 7093298 1176933 1174622 CM091765.1 scaffold378 99.78 True indel: indel (<= 5bp) 7088316 7090703 1179607 1177220 CM091765.1 scaffold378 99.75 True local misassembly 7084752 7087724 1183174 1180202 CM091765.1 scaffold378 99.8 True indel: indel (<= 5bp) 7083615 7084748 1184308 1183175 CM091765.1 scaffold378 100.0 True local misassembly 7081407 7082013 1186504 1185898 CM091765.1 scaffold378 100.0 True indel: indel (<= 5bp) 7076551 7081092 1191361 1186820 CM091765.1 scaffold378 99.67 True indel: indel (> 5bp) 7075660 7076486 1192237 1191411 CM091765.1 scaffold378 99.88 True indel: indel (<= 5bp) 7072254 7075658 1195642 1192238 CM091765.1 scaffold378 99.88 True indel: stretch of mismatches 7071293 7072040 1196603 1195856 CM091765.1 scaffold378 99.87 True indel: indel (<= 5bp) 7069266 7071292 1198631 1196605 CM091765.1 scaffold378 99.8 True indel: indel (> 5bp) 7068474 7069245 1199457 1198686 CM091765.1 scaffold378 99.74 True indel: indel (> 5bp) 7061835 7068460 1206083 1199458 CM091765.1 scaffold378 99.61 True local misassembly 7054995 7056531 1207715 1206179 CM091765.1 scaffold378 99.02 True local misassembly 7052494 7053590 1210215 1209119 CM091765.1 scaffold378 98.72 True indel: indel (<= 5bp) 7049946 7052493 1212764 1210217 CM091765.1 scaffold378 99.41 True indel: indel (<= 5bp) 7048259 7049837 1214453 1212875 CM091765.1 scaffold378 99.87 True indel: indel (<= 5bp) 7046571 7048257 1216140 1214454 CM091765.1 scaffold378 99.53 True indel: indel (> 5bp) 7043727 7046286 1218977 1216418 CM091765.1 scaffold378 99.92 True indel: indel (<= 5bp) 7042830 7043725 1219873 1218978 CM091765.1 scaffold378 99.55 True indel: indel (<= 5bp) 7042021 7042827 1220680 1219874 CM091765.1 scaffold378 99.63 True indel: indel (<= 5bp) 7037461 7042020 1225243 1220684 CM091765.1 scaffold378 99.74 True indel: indel (<= 5bp) 7035591 7037053 1227115 1225653 CM091765.1 scaffold378 99.86 True indel: indel (<= 5bp) 7034764 7035589 1227941 1227116 CM091765.1 scaffold378 99.88 True indel: indel (<= 5bp) 7029875 7034763 1232831 1227943 CM091765.1 scaffold378 99.98 True indel: indel (<= 5bp) 7026826 7029874 1235881 1232833 CM091765.1 scaffold378 100.0 True indel: indel (<= 5bp) 7023768 7026825 1238940 1235883 CM091765.1 scaffold378 99.87 True indel: indel (<= 5bp) 7022065 7023767 1240644 1238942 CM091765.1 scaffold378 99.94 True indel: indel (<= 5bp) 7020821 7022061 1241885 1240645 CM091765.1 scaffold378 100.0 True indel: indel (<= 5bp) 7019490 7020820 1243217 1241887 CM091765.1 scaffold378 99.77 True indel: indel (<= 5bp) 7016981 7019489 1245727 1243219 CM091765.1 scaffold378 99.96 True indel: indel (<= 5bp) 7016038 7016980 1246671 1245729 CM091765.1 scaffold378 99.89 True indel: indel (> 5bp) 7011889 7016025 1250808 1246672 CM091765.1 scaffold378 99.85 True indel: indel (<= 5bp) 7011034 7011888 1251664 1250810 CM091765.1 scaffold378 99.88 True local misassembly 7009162 7009887 1253557 1252832 CM091765.1 scaffold378 99.59 True indel: indel (<= 5bp) 7006108 7009161 1256612 1253559 CM091765.1 scaffold378 99.8 True indel: indel (<= 5bp) 7004936 7006008 1257787 1256715 CM091765.1 scaffold378 99.63 True indel: indel (> 5bp) 7003489 7004443 1259224 1258270 CM091765.1 scaffold378 99.9 True indel: indel (<= 5bp) 7002534 7003487 1260178 1259225 CM091765.1 scaffold378 100.0 True indel: indel (<= 5bp) 7001968 7002533 1260745 1260180 CM091765.1 scaffold378 99.82 True indel: indel (> 5bp) 7000033 7001827 1262661 1260867 CM091765.1 scaffold378 99.83 True indel: indel (<= 5bp) 6997226 7000031 1265467 1262662 CM091765.1 scaffold378 99.68 True local misassembly 6971173 6997000 1291951 1265900 CM091765.1 scaffold378 98.68 True local misassembly 6824220 6970727 1440935 1292179 CM091765.1 scaffold378 98.94 True local misassembly 6787583 6824784 1479130 1440953 CM091765.1 scaffold378 99.34 True fake: scaffold gap size wrong estimation (local) 6560807 6787359 1711420 1479579 CM091765.1 scaffold378 99.23 True CONTIG scaffold378 1711420 misassembled 330542 355404 25555 1 CM091764.1 scaffold422 97.04 True fake: scaffold gap size wrong estimation (local) 329162 330169 27525 26505 CM091764.1 scaffold422 99.19 True fake: not a misassembly (possible transposable element) 12182579 12183502 27526 28449 CM091752.1 scaffold422 99.8 True fake: not a misassembly (possible transposable element) 327524 328050 30507 29982 CM091764.1 scaffold422 99.85 True fake: not a misassembly (possible transposable element) 4919014 4920302 31796 30508 CM091763.1 scaffold422 99.3 True fake: not a misassembly (possible transposable element) 323332 327127 35672 31797 CM091764.1 scaffold422 97.81 True fake: not a misassembly (possible transposable element) 15565230 15566916 36328 38040 CM091757.1 scaffold422 95.81 True fake: not a misassembly (possible transposable element) 320491 321619 41323 40154 CM091764.1 scaffold422 95.98 True CONTIG scaffold422 41323 correct CONTIG scaffold423 3244 unaligned 15087447 15088107 1 661 CM091752.1 scaffold425 97.58 True local misassembly 15088108 15089050 749 1691 CM091752.1 scaffold425 99.05 True local misassembly 15090047 15090988 2741 3682 CM091752.1 scaffold425 99.26 True CONTIG scaffold425 4013 correct 16205964 16207107 1823 681 CM091757.1 scaffold426 97.65 True CONTIG scaffold426 1908 correct CONTIG scaffold427 993 unaligned CONTIG scaffold428 903 unaligned 10341561 10354704 13252 7 CM091765.1 scaffold429 99.21 True CONTIG scaffold429 13252 correct CONTIG scaffold430 336 unaligned CONTIG scaffold431 384 unaligned CONTIG scaffold424 4613 unaligned CONTIG scaffold433 371 unaligned 6686237 6719968 1 33884 CM091767.1 scaffold410 98.82 True local misassembly 6718968 6749679 33887 64929 CM091767.1 scaffold410 95.67 True fake: scaffold gap size wrong estimation (local) 6749815 6768105 65063 83043 CM091767.1 scaffold410 96.3 True indel: indel (> 5bp) 6768183 6794526 83089 109250 CM091767.1 scaffold410 97.96 True local misassembly 6796902 6799097 110446 112644 CM091767.1 scaffold410 99.09 True local misassembly 6799404 6829084 113715 143221 CM091767.1 scaffold410 97.44 True fake: scaffold gap size wrong estimation (local) 6829534 6830574 144550 145592 CM091767.1 scaffold410 99.52 True fake: scaffold gap size wrong estimation (local) 6831373 6871277 147463 187487 CM091767.1 scaffold410 99.17 True local misassembly 6870553 6874558 187968 191969 CM091767.1 scaffold410 99.25 True indel: indel (> 5bp) 6874644 6881176 192079 198611 CM091767.1 scaffold410 98.66 True fake: scaffold gap size wrong estimation (local) 6881847 6882526 199360 200039 CM091767.1 scaffold410 98.82 True indel: indel (<= 5bp) 6882528 6883110 200040 200622 CM091767.1 scaffold410 98.46 True indel: indel (<= 5bp) 6883389 6884112 200903 201626 CM091767.1 scaffold410 99.59 True indel: indel (<= 5bp) 6884113 6884776 201629 202292 CM091767.1 scaffold410 99.25 True local misassembly 6885439 6886143 202673 203377 CM091767.1 scaffold410 99.43 True indel: indel (<= 5bp) 6886378 6887742 203617 204981 CM091767.1 scaffold410 99.34 True indel: indel (<= 5bp) 6888001 6888640 205245 205884 CM091767.1 scaffold410 98.59 True fake: scaffold gap size wrong estimation (local) 6890864 6894937 208464 212534 CM091767.1 scaffold410 99.07 True fake: not a misassembly (possible transposable element) 13913054 13913893 212535 213372 CM091752.1 scaffold410 97.95 True fake: not a misassembly (possible transposable element) 6894629 6940337 213373 259043 CM091767.1 scaffold410 98.37 True relocation, scaffold gap is present, inconsistency = -120629 6821925 6824662 261260 263993 CM091767.1 scaffold410 98.8 True local misassembly 6823244 6824662 263994 265407 CM091767.1 scaffold410 99.08 True relocation, inconsistency = 118503 6943166 6961474 265408 283929 CM091767.1 scaffold410 98.03 True fake: scaffold gap size wrong estimation (local) 6962765 6997180 286448 320848 CM091767.1 scaffold410 99.82 True indel: indel (> 5bp) 6997205 7041507 320881 365282 CM091767.1 scaffold410 99.64 True local misassembly 7041713 7075537 365617 399449 CM091767.1 scaffold410 99.76 True indel: indel (<= 5bp) 7075555 7085146 399468 409077 CM091767.1 scaffold410 99.29 True indel: indel (> 5bp) 7085188 7101867 409174 425849 CM091767.1 scaffold410 99.38 True fake: scaffold gap size wrong estimation (local) 7101976 7106883 425972 430883 CM091767.1 scaffold410 99.39 True local misassembly 7107620 7134916 431942 460322 CM091767.1 scaffold410 97.6 True local misassembly 7135524 7165256 461514 492367 CM091767.1 scaffold410 98.59 True indel: indel (> 5bp) 7165357 7166841 492431 493946 CM091767.1 scaffold410 96.71 True indel: indel (> 5bp) 7167086 7185020 494266 512671 CM091767.1 scaffold410 98.42 True local misassembly 7185561 7186818 513236 514493 CM091767.1 scaffold410 99.29 True fake: scaffold gap size wrong estimation (local) 7187005 7215002 515356 544850 CM091767.1 scaffold410 99.06 True local misassembly 7213979 7217993 544851 548881 CM091767.1 scaffold410 98.96 True indel: indel (> 5bp) 7218137 7227156 549075 558211 CM091767.1 scaffold410 98.09 True fake: scaffold gap size wrong estimation (local) 7227206 7231361 558854 563013 CM091767.1 scaffold410 99.52 True local misassembly 7230522 7234203 563053 566784 CM091767.1 scaffold410 97.44 True local misassembly 7233597 7240342 566791 573818 CM091767.1 scaffold410 97.93 True fake: scaffold gap size wrong estimation (local) 7240567 7250978 574467 584889 CM091767.1 scaffold410 99.19 True CONTIG scaffold410 584896 misassembled CONTIG scaffold435 337 unaligned 7905781 7909701 3921 1 CM091753.1 scaffold311 99.8 True relocation, scaffold gap is present, inconsistency = 44520 7765832 7859907 101542 5275 CM091753.1 scaffold311 99.32 True indel: indel (> 5bp) 7680012 7765805 188579 101589 CM091753.1 scaffold311 98.83 True indel: indel (> 5bp) 7642543 7679742 228513 188864 CM091753.1 scaffold311 97.53 True fake: scaffold gap size wrong estimation (local) 7619251 7642314 253671 229482 CM091753.1 scaffold311 99.44 True local misassembly 7558561 7620169 315527 253684 CM091753.1 scaffold311 98.99 True local misassembly 7556845 7557677 317322 316490 CM091753.1 scaffold311 99.64 True indel: indel (<= 5bp) 7554709 7556801 319461 317369 CM091753.1 scaffold311 99.43 True local misassembly 7553139 7553957 321365 320547 CM091753.1 scaffold311 99.63 True indel: indel (<= 5bp) 7551887 7552977 322619 321529 CM091753.1 scaffold311 98.99 True indel: indel (> 5bp) 7374267 7551534 502036 322979 CM091753.1 scaffold311 99.18 True local misassembly 7247073 7374120 629715 502058 CM091753.1 scaffold311 99.24 True fake: not a misassembly (possible transposable element) 7247073 7247965 629764 630659 CM091753.1 scaffold311 99.22 True fake: not a misassembly (possible transposable element) 7171702 7246975 707424 630660 CM091753.1 scaffold311 98.93 True indel: indel (> 5bp) 7134953 7171525 744960 707568 CM091753.1 scaffold311 98.99 True indel: indel (> 5bp) 7024989 7134696 855913 745193 CM091753.1 scaffold311 99.44 True indel: indel (<= 5bp) 6991160 7024954 889756 855943 CM091753.1 scaffold311 99.34 True indel: indel (<= 5bp) 6897677 6991092 983223 889825 CM091753.1 scaffold311 99.34 True fake: scaffold gap size wrong estimation (local) 6785252 6897488 1097760 983424 CM091753.1 scaffold311 99.11 True indel: indel (<= 5bp) 6654935 6785143 1233361 1097865 CM091753.1 scaffold311 99.29 True local misassembly 6548049 6655881 1341849 1233382 CM091753.1 scaffold311 99.42 True local misassembly 6466078 6547833 1424216 1342381 CM091753.1 scaffold311 99.55 True indel: indel (> 5bp) 6371661 6465878 1519160 1424429 CM091753.1 scaffold311 99.46 True relocation, inconsistency = 38796 6121754 6332864 1732569 1519161 CM091753.1 scaffold311 98.65 True local misassembly 6002380 6121560 1851792 1732629 CM091753.1 scaffold311 99.39 True indel: indel (> 5bp) 5941558 6002311 1916870 1851853 CM091753.1 scaffold311 99.23 True indel: indel (> 5bp) 5685465 5941533 2174925 1916905 CM091753.1 scaffold311 99.37 True indel: indel (> 5bp) 5567557 5685371 2295620 2174975 CM091753.1 scaffold311 99.13 True indel: indel (> 5bp) 5533320 5567321 2329842 2295828 CM091753.1 scaffold311 99.43 True indel: indel (> 5bp) 5490060 5533292 2374399 2329923 CM091753.1 scaffold311 99.07 True local misassembly 5293882 5490430 2572586 2374561 CM091753.1 scaffold311 99.05 True fake: scaffold gap size wrong estimation (local) 5150889 5293562 2717415 2572982 CM091753.1 scaffold311 99.19 True fake: scaffold gap size wrong estimation (local) 5123718 5150776 2747103 2717810 CM091753.1 scaffold311 97.97 True indel: indel (> 5bp) 5078403 5123627 2793672 2747224 CM091753.1 scaffold311 97.3 True indel: indel (> 5bp) 5073005 5078359 2799262 2793737 CM091753.1 scaffold311 99.01 True local misassembly 5038279 5072958 2835543 2799661 CM091753.1 scaffold311 99.15 True local misassembly 5017468 5037918 2857588 2835611 CM091753.1 scaffold311 96.63 True fake: scaffold gap size wrong estimation (local) 4941088 5017136 2937403 2858316 CM091753.1 scaffold311 98.35 True fake: scaffold gap size wrong estimation (local) 4792450 4940984 3091451 2937940 CM091753.1 scaffold311 98.61 True indel: indel (> 5bp) 4791382 4792403 3092535 3091512 CM091753.1 scaffold311 99.71 True indel: indel (> 5bp) 4777319 4791349 3106713 3092581 CM091753.1 scaffold311 99.56 True fake: scaffold gap size wrong estimation (local) 4719170 4777236 3166468 3107309 CM091753.1 scaffold311 98.94 True fake: scaffold gap size wrong estimation (local) 4673268 4718812 3214870 3167505 CM091753.1 scaffold311 99.33 True local misassembly 4629612 4672625 3259529 3215502 CM091753.1 scaffold311 98.53 True local misassembly 4607542 4628865 3282611 3260299 CM091753.1 scaffold311 97.71 True fake: scaffold gap size wrong estimation (local) 4497862 4607127 3393945 3283029 CM091753.1 scaffold311 98.89 True indel: indel (> 5bp) 4382592 4497821 3511677 3394005 CM091753.1 scaffold311 99.01 True fake: scaffold gap size wrong estimation (local) 4248557 4382353 3647125 3512051 CM091753.1 scaffold311 98.52 True fake: not a misassembly (possible transposable element) 7764778 7765567 3647970 3647179 CM091751.1 scaffold311 99.37 True fake: not a misassembly (possible transposable element) 4227372 4248102 3668941 3648229 CM091753.1 scaffold311 99.4 True local misassembly 4162135 4227303 3734277 3669119 CM091753.1 scaffold311 99.82 True fake: scaffold gap size wrong estimation (local) 4063105 4162329 3833963 3734780 CM091753.1 scaffold311 99.8 True CONTIG scaffold311 3833963 misassembled 804422 908915 104492 1 CM091755.1 scaffold437 99.96 True CONTIG scaffold437 104492 correct CONTIG scaffold438 216 unaligned 10949977 10950516 540 1 CM091766.1 scaffold439 99.81 True CONTIG scaffold439 540 correct 10870624 10887941 18446 1 CM091765.1 scaffold432 95.41 True fake: scaffold gap size wrong estimation (local) 10855138 10869393 34156 19903 CM091765.1 scaffold432 99.91 True fake: scaffold gap size wrong estimation (local) 10837960 10842184 48439 44023 CM091765.1 scaffold432 95.21 True indel: indel (> 5bp) 10834056 10837822 52371 48597 CM091765.1 scaffold432 99.66 True indel: indel (> 5bp) 10824678 10833984 61753 52450 CM091765.1 scaffold432 99.83 True fake: scaffold gap size wrong estimation (local) 10820050 10824365 66905 62590 CM091765.1 scaffold432 99.98 True CONTIG scaffold432 66905 correct 4633106 4649529 1 17243 CM091768.1 scaffold441 97.05 True indel: indel (> 5bp) 4649601 4658532 17331 26357 CM091768.1 scaffold441 98.94 True indel: indel (> 5bp) 4658636 4660016 26435 27834 CM091768.1 scaffold441 97.21 True local misassembly 4660237 4660924 28438 29125 CM091768.1 scaffold441 99.85 True fake: scaffold gap size wrong estimation (local) 4661394 4671213 30159 39975 CM091768.1 scaffold441 99.91 True CONTIG scaffold441 39975 correct CONTIG scaffold442 1256 unaligned 6421839 6424223 2385 1 CM091768.1 scaffold443 99.71 True fake: scaffold gap size wrong estimation (local) 6416212 6421128 8962 3904 CM091768.1 scaffold443 97.66 True indel: indel (<= 5bp) 6408370 6416145 16984 9034 CM091768.1 scaffold443 97.57 True local misassembly 6400813 6407673 24632 17748 CM091768.1 scaffold443 99.69 True fake: scaffold gap size wrong estimation (local) 6397926 6398570 27009 26365 CM091768.1 scaffold443 99.84 True CONTIG scaffold443 27009 correct 4348619 4349276 1 657 CM091768.1 scaffold444 99.39 True CONTIG scaffold444 657 correct 10138515 10140620 2097 1 CM091752.1 scaffold445 95.35 True CONTIG scaffold445 5581 correct_unaligned CONTIG scaffold446 683 unaligned 15086206 15086878 3342 4021 CM091752.1 scaffold447 96.18 True CONTIG scaffold447 4491 correct_unaligned CONTIG scaffold448 1516 unaligned 8251401 8252223 182 1004 CM091767.1 scaffold436 99.88 True fake: scaffold gap size wrong estimation (local) 8258824 8259454 3677 4308 CM091767.1 scaffold436 98.73 True fake: scaffold gap size wrong estimation (local) 8260580 8283976 5362 29947 CM091767.1 scaffold436 99.0 True fake: scaffold gap size wrong estimation (local) 8284787 8285875 30548 31636 CM091767.1 scaffold436 99.72 True local misassembly 8286471 8289204 31637 34370 CM091767.1 scaffold436 99.89 True indel: indel (> 5bp) 8289341 8289870 34527 35056 CM091767.1 scaffold436 100.0 True indel: indel (> 5bp) 8289896 8292957 35101 38162 CM091767.1 scaffold436 99.58 True indel: indel (> 5bp) 8292958 8294178 38201 39421 CM091767.1 scaffold436 99.84 True indel: indel (> 5bp) 8294179 8295069 39449 40339 CM091767.1 scaffold436 99.78 True CONTIG scaffold436 40339 correct CONTIG scaffold450 3926 unaligned 127465 140190 1 12722 CM091761.1 scaffold451 99.87 True CONTIG scaffold451 13106 correct 1854058 1939000 86013 1 CM091755.1 scaffold449 99.06 True local misassembly 1828923 1853798 111210 86584 CM091755.1 scaffold449 96.23 True fake: scaffold gap size wrong estimation (local) 1826411 1828727 114683 112367 CM091755.1 scaffold449 99.7 True fake: scaffold gap size wrong estimation (local) 1823765 1826215 117338 114888 CM091755.1 scaffold449 99.59 True local misassembly 1821940 1822831 119721 118830 CM091755.1 scaffold449 97.87 True indel: indel (<= 5bp) 1819413 1821779 122243 119877 CM091755.1 scaffold449 99.66 True fake: scaffold gap size wrong estimation (local) 1817031 1819143 124636 122524 CM091755.1 scaffold449 99.34 True local misassembly 1815215 1815917 126718 126016 CM091755.1 scaffold449 99.29 True indel: indel (<= 5bp) 1814435 1815214 127499 126720 CM091755.1 scaffold449 99.87 True indel: indel (> 5bp) 1813607 1814434 128334 127507 CM091755.1 scaffold449 99.64 True indel: indel (<= 5bp) 1812839 1813339 129107 128607 CM091755.1 scaffold449 99.4 True indel: indel (<= 5bp) 1811804 1812765 130144 129183 CM091755.1 scaffold449 99.79 True indel: stretch of mismatches 1809819 1811385 132129 130563 CM091755.1 scaffold449 99.43 True local misassembly 1661896 1808994 282497 132962 CM091755.1 scaffold449 99.26 True local misassembly 1643587 1663059 302707 282498 CM091755.1 scaffold449 99.95 True fake: scaffold gap size wrong estimation (local) 1491215 1643385 457827 303457 CM091755.1 scaffold449 99.88 True indel: indel (> 5bp) 1487057 1491128 462004 457931 CM091755.1 scaffold449 99.49 True CONTIG scaffold449 462004 correct CONTIG scaffold453 298 unaligned 14942381 14957268 1073 15916 CM091755.1 scaffold452 98.07 True indel: indel (> 5bp) 14957347 14971382 15945 30006 CM091755.1 scaffold452 98.14 True indel: stretch of mismatches 14971383 15000676 30007 59482 CM091755.1 scaffold452 99.4 True fake: scaffold gap size wrong estimation (local) 15000723 15034277 60266 93770 CM091755.1 scaffold452 99.36 True indel: indel (> 5bp) 15034476 15065589 93917 125065 CM091755.1 scaffold452 99.54 True indel: indel (> 5bp) 15065811 15145275 125216 205516 CM091755.1 scaffold452 98.91 True local misassembly 15145460 15187826 205579 247925 CM091755.1 scaffold452 99.15 True indel: indel (<= 5bp) 15187881 15199726 247978 259990 CM091755.1 scaffold452 99.29 True CONTIG scaffold452 259995 correct 15346450 15346964 293 807 CM091752.1 scaffold455 99.81 True CONTIG scaffold455 807 correct 10100955 10101583 629 1 CM091752.1 scaffold456 98.73 True CONTIG scaffold456 708 correct CONTIG scaffold457 286 unaligned 16353611 16356988 1 3408 CM091752.1 scaffold458 97.08 True CONTIG scaffold458 3472 correct 6203425 6204261 1893 1057 CM091768.1 scaffold459 100.0 True fake: scaffold gap size wrong estimation (local) 6192341 6201970 12978 3379 CM091768.1 scaffold459 95.5 True translocation 10466633 10467150 14704 14187 CM091765.1 scaffold459 100.0 True CONTIG scaffold459 14704 misassembled 16130111 16133347 3240 1 CM091753.1 scaffold434 99.72 True local misassembly 16057127 16131398 80006 3241 CM091753.1 scaffold434 99.05 True local misassembly 16037906 16057592 100360 80038 CM091753.1 scaffold434 98.97 True indel: indel (> 5bp) 15976719 16037676 161572 100610 CM091753.1 scaffold434 99.45 True local misassembly 15926138 15977773 213802 161574 CM091753.1 scaffold434 99.44 True local misassembly 15747613 15926611 394726 213861 CM091753.1 scaffold434 99.11 True indel: indel (<= 5bp) 15677299 15747531 465898 394806 CM091753.1 scaffold434 98.79 True local misassembly 15662049 15677060 481593 466578 CM091753.1 scaffold434 99.41 True fake: scaffold gap size wrong estimation (local) 15567635 15662249 577831 482196 CM091753.1 scaffold434 99.17 True indel: indel (> 5bp) 15513889 15567510 632825 577941 CM091753.1 scaffold434 97.19 True indel: indel (> 5bp) 15468396 15513860 679316 632864 CM091753.1 scaffold434 98.77 True indel: indel (> 5bp) 15325216 15468350 824583 679394 CM091753.1 scaffold434 98.98 True fake: scaffold gap size wrong estimation (local) 15248345 15325419 904665 825350 CM091753.1 scaffold434 97.9 True indel: indel (<= 5bp) 15193396 15248290 959768 904719 CM091753.1 scaffold434 98.06 True local misassembly 15155256 15193381 998133 959968 CM091753.1 scaffold434 99.27 True indel: indel (> 5bp) 15078735 15155178 1074732 998219 CM091753.1 scaffold434 99.07 True fake: scaffold gap size wrong estimation (local) 15040322 15078318 1114203 1075629 CM091753.1 scaffold434 99.36 True fake: not a misassembly (possible transposable element) 16600105 16600807 1114906 1114204 CM091755.1 scaffold434 100.0 True fake: not a misassembly (possible transposable element) 14838535 15040276 1317424 1114907 CM091753.1 scaffold434 98.7 True indel: indel (> 5bp) 14827539 14838436 1328240 1317594 CM091753.1 scaffold434 96.37 True local misassembly 14818846 14826864 1336709 1328682 CM091753.1 scaffold434 98.63 True indel: indel (> 5bp) 14813130 14818641 1342452 1336951 CM091753.1 scaffold434 98.68 True indel: indel (> 5bp) 14674252 14813059 1483288 1342513 CM091753.1 scaffold434 97.8 True indel: indel (<= 5bp) 14646286 14674093 1511931 1483446 CM091753.1 scaffold434 99.16 True local misassembly 14647075 14647604 1512461 1511932 CM091753.1 scaffold434 99.62 True indel: indel (<= 5bp) 14645250 14647074 1514287 1512463 CM091753.1 scaffold434 99.34 True indel: indel (> 5bp) 14644370 14645036 1515186 1514520 CM091753.1 scaffold434 97.75 True local misassembly 14643430 14644138 1515905 1515197 CM091753.1 scaffold434 99.01 True indel: indel (<= 5bp) 14641005 14643095 1518327 1516237 CM091753.1 scaffold434 99.67 True local misassembly 14638913 14640390 1520902 1519425 CM091753.1 scaffold434 99.12 True indel: indel (> 5bp) 14637288 14638896 1522511 1520903 CM091753.1 scaffold434 99.38 True fake: scaffold gap size wrong estimation (local) 14626438 14636764 1533788 1523481 CM091753.1 scaffold434 99.09 True fake: scaffold gap size wrong estimation (local) 14603107 14626429 1557888 1534542 CM091753.1 scaffold434 98.73 True local misassembly 14592586 14602887 1569255 1558509 CM091753.1 scaffold434 95.08 True fake: scaffold gap size wrong estimation (local) 14574449 14592467 1587520 1569415 CM091753.1 scaffold434 99.32 True local misassembly 14560899 14574287 1601145 1587592 CM091753.1 scaffold434 98.16 True indel: indel (<= 5bp) 14433442 14560804 1730821 1601244 CM091753.1 scaffold434 98.42 True local misassembly 14432012 14432554 1732688 1732146 CM091753.1 scaffold434 98.34 True local misassembly 14414339 14431588 1750689 1733264 CM091753.1 scaffold434 98.4 True local misassembly 14350295 14414225 1816139 1751371 CM091753.1 scaffold434 98.87 True CONTIG scaffold434 1816176 correct CONTIG scaffold460 782 unaligned 2948 6374 1 3425 CM091752.1 scaffold462 99.45 True indel: indel (> 5bp) 6551 7148 3651 4265 CM091752.1 scaffold462 95.61 True CONTIG scaffold462 4265 correct CONTIG scaffold463 589 unaligned 20488982 20489568 15783 16375 CM091751.1 scaffold440 97.81 True CONTIG scaffold440 22331 correct_unaligned 13926100 13927313 1597 383 CM091752.1 scaffold465 98.6 True relocation, scaffold gap is present, inconsistency = 641859 13282162 13283156 2682 3676 CM091752.1 scaffold465 99.4 True CONTIG scaffold465 3676 misassembled 4503712 4511510 1 7805 CM091754.1 scaffold454 99.55 True CONTIG scaffold454 9106 correct 94656 96650 1 1995 CM091764.1 scaffold467 99.45 True CONTIG scaffold467 1995 correct CONTIG scaffold468 3999 unaligned 17190081 17191070 990 1 CM091752.1 scaffold469 99.9 True fake: scaffold gap size wrong estimation (local) 17188060 17189447 3746 2359 CM091752.1 scaffold469 99.71 True translocation 4372368 4374886 3747 6265 CM091768.1 scaffold469 99.48 True CONTIG scaffold469 6622 misassembled CONTIG scaffold466 1670 unaligned 4669459 4688447 19593 1 CM091766.1 scaffold412 99.01 True local misassembly 4653670 4657004 40292 36958 CM091766.1 scaffold412 98.98 True fake: scaffold gap size wrong estimation (local) 4503492 4653579 192731 41122 CM091766.1 scaffold412 99.14 True indel: indel (<= 5bp) 4477129 4503347 219584 192871 CM091766.1 scaffold412 97.95 True fake: scaffold gap size wrong estimation (local) 4452393 4476738 244399 220321 CM091766.1 scaffold412 98.11 True fake: scaffold gap size wrong estimation (local) 4375632 4452274 322953 244943 CM091766.1 scaffold412 99.4 True fake: scaffold gap size wrong estimation (local) 4371570 4375525 327317 323292 CM091766.1 scaffold412 99.74 True fake: scaffold gap size wrong estimation (local) 4336677 4371197 364273 327972 CM091766.1 scaffold412 98.07 True fake: scaffold gap size wrong estimation (local) 4322775 4336557 378722 364946 CM091766.1 scaffold412 99.21 True relocation, inconsistency = -13617 4322941 4323614 378723 379396 CM091766.1 scaffold412 100.0 True inversion 4300918 4322727 401732 379397 CM091766.1 scaffold412 99.32 True local misassembly 4277391 4301405 425801 401787 CM091766.1 scaffold412 99.0 True local misassembly 4047947 4277310 659522 426020 CM091766.1 scaffold412 99.25 True indel: indel (> 5bp) 3766752 4047548 939297 659914 CM091766.1 scaffold412 97.26 True indel: indel (> 5bp) 3739624 3766685 966988 939379 CM091766.1 scaffold412 99.38 True indel: indel (> 5bp) 3687595 3739509 1019859 967066 CM091766.1 scaffold412 98.57 True indel: indel (> 5bp) 3507495 3687352 1201534 1020169 CM091766.1 scaffold412 99.18 True indel: indel (> 5bp) 3463999 3507374 1245798 1201698 CM091766.1 scaffold412 99.5 True indel: indel (> 5bp) 3412266 3463797 1298020 1245973 CM091766.1 scaffold412 99.42 True fake: scaffold gap size wrong estimation (local) 3410343 3412812 1300526 1298076 CM091766.1 scaffold412 98.38 True fake: scaffold gap size wrong estimation (local) 3387307 3411128 1324515 1300756 CM091766.1 scaffold412 98.6 True local misassembly 3385998 3387583 1327215 1325627 CM091766.1 scaffold412 98.62 True indel: indel (<= 5bp) 3325848 3385980 1388297 1327229 CM091766.1 scaffold412 98.72 True local misassembly 3287007 3326301 1430884 1388395 CM091766.1 scaffold412 99.65 True fake: scaffold gap size wrong estimation (local) 3285765 3286507 1432602 1431844 CM091766.1 scaffold412 97.89 True fake: scaffold gap size wrong estimation (local) 3282727 3285636 1435698 1432726 CM091766.1 scaffold412 96.36 True fake: scaffold gap size wrong estimation (local) 3262452 3282521 1457557 1435917 CM091766.1 scaffold412 99.54 True fake: scaffold gap size wrong estimation (local) 3254497 3262278 1466430 1458421 CM091766.1 scaffold412 99.6 True local misassembly 3214565 3254349 1508857 1466933 CM091766.1 scaffold412 99.23 True indel: indel (> 5bp) 3166921 3214443 1559926 1509009 CM091766.1 scaffold412 98.09 True fake: scaffold gap size wrong estimation (local) 3152960 3166573 1575522 1560925 CM091766.1 scaffold412 99.22 True CONTIG scaffold412 1575522 misassembled CONTIG scaffold471 499 unaligned 1374897 1376440 1 1544 CM091764.1 scaffold473 99.87 True fake: scaffold gap size wrong estimation (local) 1376090 1377696 2560 4166 CM091764.1 scaffold473 100.0 True local misassembly 1376789 1377297 4368 4876 CM091764.1 scaffold473 96.07 True local misassembly 1378081 1378874 5272 6065 CM091764.1 scaffold473 99.75 True fake: scaffold gap size wrong estimation (local) 1379065 1382942 6270 10148 CM091764.1 scaffold473 99.95 True fake: scaffold gap size wrong estimation (local) 1384764 1394767 12059 22082 CM091764.1 scaffold473 99.3 True local misassembly 1396165 1397628 23842 25347 CM091764.1 scaffold473 97.21 True CONTIG scaffold473 25361 correct 8447318 8447874 9505 10061 CM091767.1 scaffold474 99.82 True CONTIG scaffold474 11323 correct_unaligned CONTIG scaffold475 337 unaligned 4560943 4565341 4436 1 CM091754.1 scaffold476 98.76 True fake: scaffold gap size wrong estimation (local) 4555936 4559711 9364 5488 CM091754.1 scaffold476 96.93 True fake: scaffold gap size wrong estimation (local) 4546898 4555320 18724 10109 CM091754.1 scaffold476 98.13 True local misassembly 4537462 4546359 28266 19367 CM091754.1 scaffold476 99.98 True fake: scaffold gap size wrong estimation (local) 4533967 4537041 31989 28894 CM091754.1 scaffold476 99.29 True fake: scaffold gap size wrong estimation (local) 4524353 4533582 42014 32550 CM091754.1 scaffold476 99.33 True CONTIG scaffold476 42014 correct 4940417 4940958 543 1 CM091768.1 scaffold477 97.42 True CONTIG scaffold477 557 correct 15752300 15753022 3555 2833 CM091757.1 scaffold478 99.17 True indel: indel (> 5bp) 15751602 15752140 4321 3783 CM091757.1 scaffold478 97.77 True local misassembly 15743278 15751100 12955 5104 CM091757.1 scaffold478 99.38 True CONTIG scaffold478 12955 correct 261554 262074 521 1 CM091763.1 scaffold464 99.81 True fake: scaffold gap size wrong estimation (local) 257623 260205 5518 2459 CM091763.1 scaffold464 99.64 True local misassembly 210738 256099 52973 7293 CM091763.1 scaffold464 98.76 True relocation, inconsistency = 9377 171281 201360 84360 52974 CM091763.1 scaffold464 99.0 True fake: scaffold gap size wrong estimation (local) 168383 171107 88888 86164 CM091763.1 scaffold464 99.93 True fake: scaffold gap size wrong estimation (local) 163285 164774 94911 93408 CM091763.1 scaffold464 98.94 True CONTIG scaffold464 94911 misassembled CONTIG scaffold480 881 unaligned 5722083 5722585 249 753 CM091761.1 scaffold481 97.23 True CONTIG scaffold481 753 correct 6589115 6868641 713 284881 CM091759.1 scaffold354 99.21 True indel: indel (> 5bp) 6868732 7160729 284934 585426 CM091759.1 scaffold354 98.48 True fake: scaffold gap size wrong estimation (local) 7160997 7248896 585934 673816 CM091759.1 scaffold354 99.64 True fake: scaffold gap size wrong estimation (local) 7249164 7432142 674212 860338 CM091759.1 scaffold354 99.1 True local misassembly 7433299 7680866 860955 1112760 CM091759.1 scaffold354 98.51 True fake: scaffold gap size wrong estimation (local) 7681039 7775877 1113058 1209421 CM091759.1 scaffold354 99.55 True indel: stretch of mismatches 7775966 7898058 1209510 1334626 CM091759.1 scaffold354 99.39 True fake: scaffold gap size wrong estimation (local) 7898153 8031867 1335794 1471656 CM091759.1 scaffold354 99.05 True indel: indel (> 5bp) 8031908 8160687 1471711 1602154 CM091759.1 scaffold354 99.77 True indel: indel (> 5bp) 8160736 8198255 1602216 1640379 CM091759.1 scaffold354 99.54 True fake: scaffold gap size wrong estimation (local) 8198297 8221882 1641362 1665481 CM091759.1 scaffold354 98.14 True fake: scaffold gap size wrong estimation (local) 8222471 8235696 1666638 1680352 CM091759.1 scaffold354 99.56 True fake: scaffold gap size wrong estimation (local) 8235815 8325215 1680594 1771832 CM091759.1 scaffold354 99.58 True local misassembly 8324694 8369072 1771837 1816263 CM091759.1 scaffold354 99.35 True indel: indel (> 5bp) 8369172 8389799 1816378 1836953 CM091759.1 scaffold354 99.15 True indel: indel (> 5bp) 8389810 8419281 1836984 1867253 CM091759.1 scaffold354 99.26 True fake: scaffold gap size wrong estimation (local) 8419500 8656143 1868525 2110062 CM091759.1 scaffold354 99.11 True local misassembly 8656208 8660201 2110329 2114325 CM091759.1 scaffold354 99.67 True indel: indel (> 5bp) 8660302 8680025 2114447 2135948 CM091759.1 scaffold354 95.81 True local misassembly 8680775 8979013 2136755 2440509 CM091759.1 scaffold354 98.7 True indel: indel (> 5bp) 8979320 9206844 2440830 2670555 CM091759.1 scaffold354 98.71 True CONTIG scaffold354 2670555 correct 5554565 5569065 1 15138 CM091767.1 scaffold483 99.21 True indel: indel (<= 5bp) 5569157 5569784 15232 15859 CM091767.1 scaffold483 99.84 True indel: indel (> 5bp) 5570280 5571253 16345 17318 CM091767.1 scaffold483 99.79 True indel: indel (> 5bp) 5571261 5572279 17319 18337 CM091767.1 scaffold483 99.21 True local misassembly 5573269 5574037 19523 20291 CM091767.1 scaffold483 98.7 True indel: indel (<= 5bp) 5574038 5574614 20295 20871 CM091767.1 scaffold483 98.96 True fake: scaffold gap size wrong estimation (local) 5575447 5594315 22117 41491 CM091767.1 scaffold483 97.63 True indel: indel (> 5bp) 5594478 5607533 41682 55383 CM091767.1 scaffold483 96.8 True indel: indel (> 5bp) 5607914 5613383 55750 61274 CM091767.1 scaffold483 97.5 True local misassembly 5613730 5617109 61405 64660 CM091767.1 scaffold483 95.57 True local misassembly 5618134 5624708 66348 73082 CM091767.1 scaffold483 98.82 True fake: scaffold gap size wrong estimation (local) 5624990 5692362 73383 141324 CM091767.1 scaffold483 96.8 True fake: not a misassembly (possible transposable element) 5705370 5706442 141325 142393 CM091767.1 scaffold483 98.19 True fake: not a misassembly (possible transposable element) 5692307 5704778 142394 155492 CM091767.1 scaffold483 99.21 True CONTIG scaffold483 155492 correct CONTIG scaffold484 445 unaligned 2451744 2452720 1 949 CM091760.1 scaffold472 97.13 True fake: scaffold gap size wrong estimation (local) 2452940 2625198 2299 175503 CM091760.1 scaffold472 99.45 True indel: indel (> 5bp) 2625494 2818113 175733 369323 CM091760.1 scaffold472 99.3 True local misassembly 2819075 2825688 370308 376904 CM091760.1 scaffold472 99.24 True indel: indel (> 5bp) 2825917 2944449 377096 496153 CM091760.1 scaffold472 98.79 True local misassembly 2944683 2965281 496499 517115 CM091760.1 scaffold472 99.64 True local misassembly 2964309 3024485 517116 577297 CM091760.1 scaffold472 99.45 True indel: indel (> 5bp) 3024508 3143425 577358 696041 CM091760.1 scaffold472 99.17 True fake: scaffold gap size wrong estimation (local) 3145214 3209666 698242 762637 CM091760.1 scaffold472 99.23 True local misassembly 3210191 3217011 764206 771062 CM091760.1 scaffold472 99.15 True CONTIG scaffold472 771062 correct 17247114 17247819 1 706 CM091752.1 scaffold486 99.15 True CONTIG scaffold486 706 correct CONTIG scaffold485 5203 unaligned CONTIG scaffold488 733 unaligned CONTIG scaffold489 478 unaligned CONTIG scaffold490 323 unaligned 1591707 1592725 1019 1 CM091764.1 scaffold487 99.71 True local misassembly 1584019 1590660 8478 1788 CM091764.1 scaffold487 99.59 True fake: scaffold gap size wrong estimation (local) 1582856 1583354 9676 9146 CM091764.1 scaffold487 96.51 True fake: scaffold gap size wrong estimation (local) 1575912 1582576 17899 11114 CM091764.1 scaffold487 97.82 True indel: indel (> 5bp) 1573446 1575359 20313 18390 CM091764.1 scaffold487 99.12 True local misassembly 1565138 1567848 23023 20314 CM091764.1 scaffold487 99.85 True fake: scaffold gap size wrong estimation (local) 1552716 1564505 36001 24234 CM091764.1 scaffold487 99.67 True local misassembly 1548010 1553276 41272 36002 CM091764.1 scaffold487 99.51 True local misassembly 1546865 1547415 42774 42223 CM091764.1 scaffold487 99.64 True fake: not a misassembly (possible transposable element) 4011559 4013012 44591 43138 CM091752.1 scaffold487 99.52 True fake: not a misassembly (possible transposable element) 1543531 1545939 47075 44665 CM091764.1 scaffold487 99.88 True indel: indel (> 5bp) 1540882 1543409 49717 47190 CM091764.1 scaffold487 98.89 True fake: scaffold gap size wrong estimation (local) 1531553 1540536 59251 50268 CM091764.1 scaffold487 99.88 True fake: scaffold gap size wrong estimation (local) 1528666 1531642 62688 59711 CM091764.1 scaffold487 99.76 True CONTIG scaffold487 62688 correct 10480475 10481693 411 1629 CM091765.1 scaffold479 100.0 True local misassembly 10481694 10483098 2085 3489 CM091765.1 scaffold479 100.0 True indel: indel (<= 5bp) 10483100 10488292 3490 8682 CM091765.1 scaffold479 99.98 True local misassembly 10489642 10492389 10511 13304 CM091765.1 scaffold479 99.05 True CONTIG scaffold479 13304 correct 3350217 3512066 355 162257 CM091759.1 scaffold491 99.64 True fake: not a misassembly (possible transposable element) 3510969 3511817 163110 162259 CM091759.1 scaffold491 98.94 True fake: not a misassembly (possible transposable element) 3512144 3528825 163141 180112 CM091759.1 scaffold491 96.75 True indel: indel (> 5bp) 3528930 3531556 180232 182864 CM091759.1 scaffold491 98.83 True CONTIG scaffold491 182948 correct CONTIG scaffold494 429 unaligned 43557 52326 1 8824 CM091753.1 scaffold495 99.17 True local misassembly 52776 53618 9358 10205 CM091753.1 scaffold495 98.89 True CONTIG scaffold495 10205 correct 12841163 12891461 51612 1 CM091754.1 scaffold496 98.89 True indel: indel (> 5bp) 12773834 12841117 120082 51670 CM091754.1 scaffold496 98.57 True local misassembly 12752058 12774767 144160 120095 CM091754.1 scaffold496 98.17 True CONTIG scaffold496 144160 correct 2139458 2148439 10659 1674 CM091756.1 scaffold396 99.39 True fake: scaffold gap size wrong estimation (local) 2049804 2138857 105589 13062 CM091756.1 scaffold396 99.44 True fake: scaffold gap size wrong estimation (local) 1968097 2049400 190368 107697 CM091756.1 scaffold396 99.12 True fake: scaffold gap size wrong estimation (local) 1937230 1967969 223927 190996 CM091756.1 scaffold396 97.93 True fake: scaffold gap size wrong estimation (local) 1764300 1936480 400507 225319 CM091756.1 scaffold396 99.09 True fake: scaffold gap size wrong estimation (local) 1756686 1764187 408757 401257 CM091756.1 scaffold396 99.65 True fake: scaffold gap size wrong estimation (local) 1741865 1756555 424830 409616 CM091756.1 scaffold396 96.98 True fake: scaffold gap size wrong estimation (local) 1712980 1741576 455679 425413 CM091756.1 scaffold396 99.37 True fake: scaffold gap size wrong estimation (local) 1700888 1712810 468009 456091 CM091756.1 scaffold396 99.46 True fake: scaffold gap size wrong estimation (local) 1699328 1700193 469819 468954 CM091756.1 scaffold396 99.88 True indel: indel (<= 5bp) 1698562 1699326 470584 469820 CM091756.1 scaffold396 99.87 True indel: indel (<= 5bp) 1696876 1698560 472269 470585 CM091756.1 scaffold396 99.7 True indel: indel (<= 5bp) 1696152 1696875 472994 472271 CM091756.1 scaffold396 99.72 True local misassembly 1694476 1696151 475091 473416 CM091756.1 scaffold396 99.94 True indel: indel (<= 5bp) 1693882 1694475 475686 475093 CM091756.1 scaffold396 99.83 True indel: indel (<= 5bp) 1692511 1693881 477059 475689 CM091756.1 scaffold396 99.93 True fake: scaffold gap size wrong estimation (local) 1684879 1692080 484758 477487 CM091756.1 scaffold396 99.56 True indel: indel (> 5bp) 1674433 1684838 495264 484850 CM091756.1 scaffold396 99.53 True fake: scaffold gap size wrong estimation (local) 1650784 1674274 521850 496344 CM091756.1 scaffold396 99.36 True fake: scaffold gap size wrong estimation (local) 1620876 1650389 552167 522560 CM091756.1 scaffold396 99.62 True local misassembly 1396810 1620342 778637 552719 CM091756.1 scaffold396 99.41 True indel: indel (> 5bp) 1332491 1396777 843565 778681 CM091756.1 scaffold396 97.57 True fake: scaffold gap size wrong estimation (local) 1202137 1332371 978083 843683 CM091756.1 scaffold396 99.39 True indel: indel (> 5bp) 1182658 1201960 998152 978178 CM091756.1 scaffold396 99.44 True fake: scaffold gap size wrong estimation (local) 1158271 1182298 1023344 998989 CM091756.1 scaffold396 99.55 True local misassembly 955422 1159516 1235140 1023345 CM091756.1 scaffold396 98.96 True local misassembly 930686 955386 1260489 1235318 CM091756.1 scaffold396 98.23 True fake: scaffold gap size wrong estimation (local) 927380 930148 1264153 1261371 CM091756.1 scaffold396 99.21 True indel: indel (> 5bp) 862896 927341 1329482 1264210 CM091756.1 scaffold396 99.29 True indel: indel (> 5bp) 834032 862845 1359856 1329546 CM091756.1 scaffold396 99.32 True indel: indel (<= 5bp) 719490 833760 1476016 1360126 CM091756.1 scaffold396 99.06 True fake: scaffold gap size wrong estimation (local) 689341 721655 1510464 1476680 CM091756.1 scaffold396 98.85 True local misassembly 451777 690329 1754528 1510465 CM091756.1 scaffold396 99.3 True fake: scaffold gap size wrong estimation (local) 350537 451680 1858297 1754812 CM091756.1 scaffold396 98.15 True indel: indel (> 5bp) 223013 350512 1988871 1858344 CM091756.1 scaffold396 99.09 True local misassembly 135528 222578 2080891 1989615 CM091756.1 scaffold396 99.11 True indel: indel (> 5bp) 19348 135425 2200664 2080987 CM091756.1 scaffold396 99.18 True CONTIG scaffold396 2200664 correct 1500532 1503602 4573 1503 CM091764.1 scaffold498 100.0 True indel: indel (> 5bp) 1498951 1500414 6216 4753 CM091764.1 scaffold498 100.0 True local misassembly 1493016 1496347 12080 8632 CM091764.1 scaffold498 95.32 True fake: scaffold gap size wrong estimation (local) 1484943 1492828 20145 12258 CM091764.1 scaffold498 99.95 True fake: scaffold gap size wrong estimation (local) 1479138 1483204 25745 21607 CM091764.1 scaffold498 98.14 True indel: indel (> 5bp) 1463250 1479015 41676 25885 CM091764.1 scaffold498 99.61 True local misassembly 1460571 1462540 45473 43435 CM091764.1 scaffold498 96.52 True CONTIG scaffold498 45473 correct 7690070 7690993 951 35 CM091767.1 scaffold499 98.81 True CONTIG scaffold499 951 correct 1062430 1070389 1 7954 CM091765.1 scaffold470 99.57 True indel: indel (> 5bp) 1070440 1113991 8013 53267 CM091765.1 scaffold470 99.43 True fake: scaffold gap size wrong estimation (local) 1114308 1174895 55659 118325 CM091765.1 scaffold470 97.56 True indel: indel (> 5bp) 1174947 1234375 118384 177448 CM091765.1 scaffold470 98.85 True fake: scaffold gap size wrong estimation (local) 1235604 1348083 179251 295486 CM091765.1 scaffold470 99.23 True indel: indel (> 5bp) 1348131 1515710 295548 464171 CM091765.1 scaffold470 99.35 True fake: scaffold gap size wrong estimation (local) 1515789 1521919 464257 471033 CM091765.1 scaffold470 99.4 True fake: scaffold gap size wrong estimation (local) 1522240 1523539 471813 473112 CM091765.1 scaffold470 99.85 True fake: scaffold gap size wrong estimation (local) 1523683 1533796 473264 484211 CM091765.1 scaffold470 99.26 True fake: scaffold gap size wrong estimation (local) 1534045 1587337 484793 542509 CM091765.1 scaffold470 98.84 True fake: scaffold gap size wrong estimation (local) 1587679 1588227 543412 543952 CM091765.1 scaffold470 98.36 True fake: scaffold gap size wrong estimation (local) 1589693 1590812 546658 547797 CM091765.1 scaffold470 99.64 True fake: scaffold gap size wrong estimation (local) 1591041 1594009 548185 551150 CM091765.1 scaffold470 99.56 True fake: scaffold gap size wrong estimation (local) 1594208 1608873 551343 566417 CM091765.1 scaffold470 99.18 True fake: scaffold gap size wrong estimation (local) 1609908 1616708 567747 574719 CM091765.1 scaffold470 99.21 True fake: scaffold gap size wrong estimation (local) 1616877 1626148 574834 584280 CM091765.1 scaffold470 98.98 True local misassembly 1626421 1637598 584297 596058 CM091765.1 scaffold470 98.35 True fake: scaffold gap size wrong estimation (local) 1638203 1649771 596483 609034 CM091765.1 scaffold470 99.27 True fake: scaffold gap size wrong estimation (local) 1649863 1664725 609349 625027 CM091765.1 scaffold470 99.21 True fake: scaffold gap size wrong estimation (local) 1664942 1676864 625592 638202 CM091765.1 scaffold470 99.19 True fake: scaffold gap size wrong estimation (local) 1677180 1697990 638513 659686 CM091765.1 scaffold470 99.23 True CONTIG scaffold470 660464 correct 4551613 4553473 1861 1 CM091768.1 scaffold501 100.0 True CONTIG scaffold501 1861 correct CONTIG scaffold502 446 unaligned CONTIG scaffold503 345 unaligned 720467 722926 1 2496 CM091753.1 scaffold504 98.71 True local misassembly 724885 783942 2497 61632 CM091753.1 scaffold504 99.84 True inversion 784093 784936 62479 61636 CM091753.1 scaffold504 99.66 True relocation, inconsistency = -25216 784053 809308 62480 87902 CM091753.1 scaffold504 99.25 True relocation, inconsistency = 18008 827317 845760 87903 106464 CM091753.1 scaffold504 98.86 True indel: indel (> 5bp) 845878 897661 106595 158907 CM091753.1 scaffold504 99.82 True fake: scaffold gap size wrong estimation (local) 898150 910073 159031 170988 CM091753.1 scaffold504 99.66 True local misassembly 910250 926348 171032 187168 CM091753.1 scaffold504 99.67 True fake: scaffold gap size wrong estimation (local) 926989 990028 188018 251312 CM091753.1 scaffold504 98.63 True CONTIG scaffold504 252849 misassembled 19497374 19499303 2315 1 CM091751.1 scaffold505 95.22 True local misassembly 19491953 19497067 7454 2339 CM091751.1 scaffold505 99.12 True CONTIG scaffold505 7478 correct 2843829 2846536 2733 1 CM091762.1 scaffold391 98.72 True fake: scaffold gap size wrong estimation (local) 2768070 2843217 79091 3984 CM091762.1 scaffold391 99.7 True fake: scaffold gap size wrong estimation (local) 2676691 2766628 174336 82153 CM091762.1 scaffold391 97.92 True local misassembly 2652698 2677462 199073 174337 CM091762.1 scaffold391 99.68 True fake: not a misassembly (possible transposable element) 360329 361243 199983 199076 CM091751.1 scaffold391 98.8 True fake: not a misassembly (possible transposable element) 2634763 2652605 217824 199984 CM091762.1 scaffold391 99.97 True local misassembly 2535195 2634594 317752 218232 CM091762.1 scaffold391 99.89 True local misassembly 2346874 2534964 509989 318503 CM091762.1 scaffold391 99.05 True indel: indel (> 5bp) 2320740 2346804 536107 510042 CM091762.1 scaffold391 99.93 True local misassembly 2304245 2320707 553018 536230 CM091762.1 scaffold391 97.72 True fake: scaffold gap size wrong estimation (local) 2176993 2304097 683662 553888 CM091762.1 scaffold391 98.45 True fake: scaffold gap size wrong estimation (local) 1711433 2176854 1152687 684456 CM091762.1 scaffold391 99.53 True fake: scaffold gap size wrong estimation (local) 1652694 1711214 1212363 1153112 CM091762.1 scaffold391 99.41 True indel: indel (> 5bp) 1569934 1652593 1295582 1212453 CM091762.1 scaffold391 99.62 True fake: scaffold gap size wrong estimation (local) 1547959 1569779 1318022 1296183 CM091762.1 scaffold391 99.69 True indel: indel (> 5bp) 1503766 1547764 1362173 1318176 CM091762.1 scaffold391 99.61 True local misassembly 1501923 1503525 1364211 1362609 CM091762.1 scaffold391 99.94 True indel: indel (<= 5bp) 1500645 1501921 1365488 1364212 CM091762.1 scaffold391 99.77 True indel: indel (<= 5bp) 1499417 1500644 1366719 1365492 CM091762.1 scaffold391 99.84 True indel: indel (<= 5bp) 1496318 1499415 1369817 1366720 CM091762.1 scaffold391 99.74 True indel: indel (<= 5bp) 1494297 1496317 1371839 1369819 CM091762.1 scaffold391 99.9 True indel: indel (<= 5bp) 1493466 1494296 1372671 1371841 CM091762.1 scaffold391 99.76 True indel: indel (> 5bp) 1492269 1493465 1373880 1372684 CM091762.1 scaffold391 99.92 True indel: indel (<= 5bp) 1491121 1492267 1375027 1373881 CM091762.1 scaffold391 99.91 True indel: indel (<= 5bp) 1488509 1491120 1377640 1375029 CM091762.1 scaffold391 99.81 True local misassembly 1486759 1487974 1379397 1378182 CM091762.1 scaffold391 98.93 True indel: indel (<= 5bp) 1484088 1486758 1382071 1379401 CM091762.1 scaffold391 99.89 True indel: indel (> 5bp) 1482214 1484057 1383951 1382108 CM091762.1 scaffold391 100.0 True indel: indel (<= 5bp) 1478124 1482213 1388042 1383953 CM091762.1 scaffold391 99.85 True indel: indel (<= 5bp) 1477142 1478123 1389025 1388044 CM091762.1 scaffold391 99.49 True local misassembly 1475829 1476328 1390341 1389842 CM091762.1 scaffold391 99.8 True indel: indel (<= 5bp) 1474831 1475481 1391342 1390692 CM091762.1 scaffold391 100.0 True indel: indel (<= 5bp) 1472573 1474830 1393601 1391344 CM091762.1 scaffold391 99.73 True indel: indel (<= 5bp) 1469823 1472572 1396352 1393603 CM091762.1 scaffold391 99.96 True indel: indel (<= 5bp) 1466202 1469822 1399974 1396354 CM091762.1 scaffold391 99.83 True indel: indel (> 5bp) 1463771 1466186 1402390 1399975 CM091762.1 scaffold391 99.67 True indel: indel (<= 5bp) 1457312 1463770 1408850 1402392 CM091762.1 scaffold391 99.49 True fake: scaffold gap size wrong estimation (local) 1455429 1456578 1410839 1409690 CM091762.1 scaffold391 100.0 True indel: indel (<= 5bp) 1454844 1455427 1411423 1410840 CM091762.1 scaffold391 99.49 True relocation, inconsistency = 7744 1444403 1447099 1414120 1411424 CM091762.1 scaffold391 99.89 True indel: indel (<= 5bp) 1440840 1444402 1417684 1414122 CM091762.1 scaffold391 99.94 True indel: indel (<= 5bp) 1436854 1440838 1421669 1417685 CM091762.1 scaffold391 99.9 True indel: indel (<= 5bp) 1435206 1436853 1423320 1421673 CM091762.1 scaffold391 99.82 True indel: indel (<= 5bp) 1433504 1435205 1425026 1423325 CM091762.1 scaffold391 99.88 True indel: indel (> 5bp) 1423523 1433503 1435018 1425038 CM091762.1 scaffold391 99.96 True indel: indel (> 5bp) 1355233 1423461 1503924 1435115 CM091762.1 scaffold391 99.6 True local misassembly 1326604 1355824 1533115 1503925 CM091762.1 scaffold391 99.37 True indel: indel (<= 5bp) 971834 1326537 1894071 1533181 CM091762.1 scaffold391 99.01 True relocation, inconsistency = -353746 972792 973353 1894072 1894633 CM091762.1 scaffold391 100.0 True inversion 936350 971809 1930291 1894649 CM091762.1 scaffold391 99.7 True local misassembly 909699 936252 1957874 1931003 CM091762.1 scaffold391 99.48 True indel: indel (> 5bp) 907758 909569 1959733 1957922 CM091762.1 scaffold391 99.67 True local misassembly 906715 907334 1960684 1960065 CM091762.1 scaffold391 99.68 True indel: indel (<= 5bp) 905071 906404 1962330 1960997 CM091762.1 scaffold391 99.93 True indel: indel (<= 5bp) 904334 904876 1963068 1962526 CM091762.1 scaffold391 99.45 True indel: indel (<= 5bp) 902379 903968 1965025 1963436 CM091762.1 scaffold391 99.81 True indel: indel (> 5bp) 898513 902321 1968834 1965026 CM091762.1 scaffold391 99.92 True indel: indel (<= 5bp) 897643 898512 1969705 1968836 CM091762.1 scaffold391 100.0 True indel: indel (<= 5bp) 896314 897642 1971035 1969707 CM091762.1 scaffold391 100.0 True indel: indel (<= 5bp) 894571 895855 1972777 1971493 CM091762.1 scaffold391 100.0 True indel: indel (<= 5bp) 891813 894570 1975536 1972779 CM091762.1 scaffold391 99.71 True local misassembly 886447 888108 1977198 1975537 CM091762.1 scaffold391 99.88 True indel: indel (> 5bp) 881191 886429 1982437 1977199 CM091762.1 scaffold391 99.81 True indel: indel (<= 5bp) 880063 881190 1983566 1982439 CM091762.1 scaffold391 100.0 True indel: indel (<= 5bp) 875779 880062 1987851 1983568 CM091762.1 scaffold391 99.86 True indel: indel (<= 5bp) 645438 875687 2218161 1987946 CM091762.1 scaffold391 99.62 True indel: indel (<= 5bp) 527660 645406 2336986 2218196 CM091762.1 scaffold391 99.0 True fake: scaffold gap size wrong estimation (local) 347610 527483 2516978 2337820 CM091762.1 scaffold391 98.69 True fake: scaffold gap size wrong estimation (local) 278834 343269 2584295 2518817 CM091762.1 scaffold391 99.08 True fake: scaffold gap size wrong estimation (local) 243601 278406 2619652 2584839 CM091762.1 scaffold391 99.38 True fake: scaffold gap size wrong estimation (local) 205115 243475 2658854 2620470 CM091762.1 scaffold391 99.52 True fake: scaffold gap size wrong estimation (local) 126545 204982 2737426 2659101 CM091762.1 scaffold391 99.35 True local misassembly 93213 120655 2765832 2737427 CM091762.1 scaffold391 98.96 True CONTIG scaffold391 3121785 misassembled CONTIG scaffold507 409 unaligned 530452 537783 7365 1 CM091764.1 scaffold508 99.54 True fake: scaffold gap size wrong estimation (local) 526803 527612 10870 10061 CM091764.1 scaffold508 99.63 True fake: not a misassembly (possible transposable element) 1350507 1353363 13733 10884 CM091755.1 scaffold508 99.09 True fake: not a misassembly (possible transposable element) 515876 524386 23186 14613 CM091764.1 scaffold508 98.5 True local misassembly 492574 517417 48172 23270 CM091764.1 scaffold508 99.55 True CONTIG scaffold508 48172 correct 8815990 8816827 838 1 CM091752.1 scaffold509 99.76 True CONTIG scaffold509 838 correct CONTIG scaffold510 334 unaligned 3895433 4055713 162508 15 CM091762.1 scaffold482 98.21 True indel: indel (<= 5bp) 3536016 3895367 525447 162578 CM091762.1 scaffold482 99.22 True fake: scaffold gap size wrong estimation (local) 3461530 3535835 602269 526643 CM091762.1 scaffold482 98.48 True fake: scaffold gap size wrong estimation (local) 3383493 3461342 683935 602590 CM091762.1 scaffold482 99.28 True fake: scaffold gap size wrong estimation (local) 3277691 3383104 796685 684722 CM091762.1 scaffold482 98.38 True fake: scaffold gap size wrong estimation (local) 3269738 3277399 804866 797203 CM091762.1 scaffold482 99.29 True local misassembly 3097428 3270510 981068 804876 CM091762.1 scaffold482 98.75 True CONTIG scaffold482 981068 correct CONTIG scaffold506 691 unaligned 16687196 16688160 1 966 CM091752.1 scaffold513 99.59 True local misassembly 16687435 16689013 967 2542 CM091752.1 scaffold513 98.42 True fake: scaffold gap size wrong estimation (local) 16689161 16691787 2688 5335 CM091752.1 scaffold513 97.29 True local misassembly 16693170 16694158 5704 6697 CM091752.1 scaffold513 97.69 True CONTIG scaffold513 7001 correct 1400253 1457114 1 56862 CM091753.1 scaffold492 99.94 True local misassembly 1457215 1465319 58128 66237 CM091753.1 scaffold492 99.89 True fake: scaffold gap size wrong estimation (local) 1466364 1473119 67204 73961 CM091753.1 scaffold492 99.88 True fake: scaffold gap size wrong estimation (local) 1473153 1480410 74954 82225 CM091753.1 scaffold492 99.77 True relocation, inconsistency = 26695 1529511 1542125 104631 117249 CM091753.1 scaffold492 99.91 True fake: scaffold gap size wrong estimation (local) 1542458 1586374 118314 162222 CM091753.1 scaffold492 99.93 True fake: not a misassembly (possible transposable element) 16136774 16137734 163190 162242 CM091755.1 scaffold492 98.18 True fake: not a misassembly (possible transposable element) 1586260 1590368 163191 167325 CM091753.1 scaffold492 99.27 True fake: scaffold gap size wrong estimation (local) 1591130 1603079 168306 180229 CM091753.1 scaffold492 99.7 True local misassembly 1603147 1620136 180709 197695 CM091753.1 scaffold492 99.72 True fake: scaffold gap size wrong estimation (local) 1620903 1625743 199051 204299 CM091753.1 scaffold492 96.91 True local misassembly 1625999 1702546 204703 282115 CM091753.1 scaffold492 99.84 True local misassembly 1703152 1721281 282497 300630 CM091753.1 scaffold492 99.42 True indel: indel (> 5bp) 1721380 1738405 300761 319320 CM091753.1 scaffold492 99.15 True fake: scaffold gap size wrong estimation (local) 1742230 1762929 320337 341280 CM091753.1 scaffold492 99.49 True indel: indel (> 5bp) 1763124 1806082 341523 384698 CM091753.1 scaffold492 98.86 True fake: scaffold gap size wrong estimation (local) 1806310 1818788 384918 397414 CM091753.1 scaffold492 99.52 True local misassembly 1817903 1818650 397415 398162 CM091753.1 scaffold492 99.87 True CONTIG scaffold492 398162 misassembled CONTIG scaffold515 4485 unaligned CONTIG scaffold516 318 unaligned CONTIG scaffold517 1439 unaligned 6213712 6238271 38 24587 CM091755.1 scaffold514 99.46 True fake: scaffold gap size wrong estimation (local) 6238516 6274137 25591 61222 CM091755.1 scaffold514 99.41 True indel: indel (> 5bp) 6274267 6306161 61279 93559 CM091755.1 scaffold514 98.07 True local misassembly 6321870 6479588 115571 277739 CM091755.1 scaffold514 99.39 True indel: indel (> 5bp) 6479617 6518575 277787 318552 CM091755.1 scaffold514 99.37 True indel: indel (> 5bp) 6518681 6573609 318701 374399 CM091755.1 scaffold514 99.29 True indel: indel (> 5bp) 6573642 6659743 374426 461853 CM091755.1 scaffold514 98.78 True CONTIG scaffold514 461894 correct CONTIG scaffold518 579 unaligned 4231934 4232439 1 506 CM091754.1 scaffold520 100.0 True fake: scaffold gap size wrong estimation (local) 4232652 4237656 1432 6438 CM091754.1 scaffold520 99.94 True fake: scaffold gap size wrong estimation (local) 4237813 4245955 6873 15034 CM091754.1 scaffold520 99.54 True CONTIG scaffold520 15034 correct 2645481 2646141 1132 472 CM091768.1 scaffold521 100.0 True local misassembly 2644344 2644917 2271 1698 CM091768.1 scaffold521 98.78 True indel: indel (> 5bp) 2643540 2644061 3089 2568 CM091768.1 scaffold521 99.81 True local misassembly 2641114 2641709 5517 4922 CM091768.1 scaffold521 99.66 True local misassembly 2638205 2639670 8433 6968 CM091768.1 scaffold521 99.25 True indel: indel (<= 5bp) 2637075 2637786 9561 8850 CM091768.1 scaffold521 98.88 True indel: indel (<= 5bp) 2636462 2637073 10173 9562 CM091768.1 scaffold521 99.35 True local misassembly 2633949 2634962 12654 11641 CM091768.1 scaffold521 99.31 True local misassembly 2632856 2633554 13443 12745 CM091768.1 scaffold521 99.0 True indel: indel (> 5bp) 2631737 2632508 14574 13803 CM091768.1 scaffold521 99.09 True indel: indel (<= 5bp) 2630823 2631674 15493 14642 CM091768.1 scaffold521 99.53 True indel: indel (<= 5bp) 2629473 2630433 16847 15887 CM091768.1 scaffold521 99.58 True indel: indel (<= 5bp) 2628436 2629113 17887 17210 CM091768.1 scaffold521 99.71 True indel: indel (> 5bp) 2626821 2628419 19486 17888 CM091768.1 scaffold521 99.62 True local misassembly 2624884 2626458 21765 20191 CM091768.1 scaffold521 99.56 True local misassembly 2623298 2624186 23237 22349 CM091768.1 scaffold521 99.89 True indel: indel (<= 5bp) 2622713 2623297 23823 23239 CM091768.1 scaffold521 99.66 True indel: indel (<= 5bp) 2602214 2622551 44425 23980 CM091768.1 scaffold521 97.08 True relocation, inconsistency = -20117 2602435 2603497 44426 45488 CM091768.1 scaffold521 99.46 True inversion 2587940 2602162 60220 45489 CM091768.1 scaffold521 98.7 True fake: scaffold gap size wrong estimation (local) 2574425 2586438 74717 62700 CM091768.1 scaffold521 99.43 True local misassembly 2573371 2573913 75764 75222 CM091768.1 scaffold521 99.82 True indel: indel (<= 5bp) 2572572 2573370 76566 75768 CM091768.1 scaffold521 99.75 True indel: indel (<= 5bp) 2571931 2572571 77210 76570 CM091768.1 scaffold521 99.22 True indel: indel (<= 5bp) 2570635 2571663 78508 77480 CM091768.1 scaffold521 99.51 True local misassembly 2567881 2569363 80742 79260 CM091768.1 scaffold521 99.73 True indel: indel (> 5bp) 2566646 2567589 81969 81026 CM091768.1 scaffold521 99.58 True indel: indel (<= 5bp) 2565949 2566645 82667 81971 CM091768.1 scaffold521 99.43 True indel: indel (> 5bp) 2564853 2565856 83788 82785 CM091768.1 scaffold521 99.0 True local misassembly 2560837 2563583 87973 85220 CM091768.1 scaffold521 98.77 True local misassembly 2557565 2560197 91663 88757 CM091768.1 scaffold521 98.82 True local misassembly 2555967 2556755 92725 91937 CM091768.1 scaffold521 99.37 True indel: indel (<= 5bp) 2555066 2555961 93621 92726 CM091768.1 scaffold521 99.22 True fake: scaffold gap size wrong estimation (local) 2546113 2554327 103686 94948 CM091768.1 scaffold521 96.67 True fake: scaffold gap size wrong estimation (local) 2484888 2545332 165355 104561 CM091768.1 scaffold521 98.58 True local misassembly 2476015 2484352 174211 165995 CM091768.1 scaffold521 97.41 True local misassembly 2472412 2474124 177591 175879 CM091768.1 scaffold521 99.59 True indel: indel (<= 5bp) 2471502 2472411 178502 177593 CM091768.1 scaffold521 99.56 True indel: indel (<= 5bp) 2469728 2471501 180277 178504 CM091768.1 scaffold521 99.21 True local misassembly 2468957 2469471 180792 180278 CM091768.1 scaffold521 98.64 True indel: indel (> 5bp) 2467496 2468586 182239 181149 CM091768.1 scaffold521 99.36 True local misassembly 2465258 2466145 184429 183542 CM091768.1 scaffold521 98.99 True indel: indel (> 5bp) 2464195 2465078 185443 184560 CM091768.1 scaffold521 99.32 True indel: indel (> 5bp) 2463348 2463858 186264 185754 CM091768.1 scaffold521 98.83 True local misassembly 2459006 2461993 190500 187444 CM091768.1 scaffold521 96.21 True indel: indel (> 5bp) 2448856 2458944 200437 190553 CM091768.1 scaffold521 95.78 True local misassembly 2445652 2448041 203728 201278 CM091768.1 scaffold521 96.5 True local misassembly 2444029 2444804 205591 204816 CM091768.1 scaffold521 99.61 True local misassembly 2442426 2443076 207193 206543 CM091768.1 scaffold521 98.92 True indel: indel (> 5bp) 2441412 2441932 208213 207693 CM091768.1 scaffold521 97.7 True local misassembly 2440199 2440894 209450 208755 CM091768.1 scaffold521 99.14 True local misassembly 2438928 2439506 211056 210478 CM091768.1 scaffold521 99.83 True indel: indel (<= 5bp) 2437992 2438827 211989 211154 CM091768.1 scaffold521 99.64 True fake: scaffold gap size wrong estimation (local) 2435436 2437463 215614 213588 CM091768.1 scaffold521 99.21 True local misassembly 2429688 2432001 220193 217883 CM091768.1 scaffold521 98.88 True local misassembly 2428868 2429554 221658 220972 CM091768.1 scaffold521 98.4 True local misassembly 2425731 2428100 224794 222425 CM091768.1 scaffold521 99.2 True local misassembly 2423455 2424230 226432 225657 CM091768.1 scaffold521 99.36 True indel: indel (<= 5bp) 2421988 2423337 227894 226545 CM091768.1 scaffold521 99.26 True indel: indel (> 5bp) 2421265 2421939 228569 227895 CM091768.1 scaffold521 99.7 True indel: indel (<= 5bp) 2420735 2421264 229101 228572 CM091768.1 scaffold521 99.25 True local misassembly 2418666 2420062 231158 229762 CM091768.1 scaffold521 98.64 True local misassembly 2417199 2417762 232804 232241 CM091768.1 scaffold521 98.94 True indel: indel (<= 5bp) 2416035 2417169 233971 232837 CM091768.1 scaffold521 99.38 True local misassembly 2412744 2413471 236702 235975 CM091768.1 scaffold521 99.45 True indel: indel (<= 5bp) 2411604 2412742 237841 236703 CM091768.1 scaffold521 99.03 True local misassembly 2410147 2411594 239677 238230 CM091768.1 scaffold521 99.24 True indel: indel (> 5bp) 2406801 2409827 242966 240018 CM091768.1 scaffold521 96.66 True local misassembly 2405906 2406707 244125 243324 CM091768.1 scaffold521 98.25 True indel: indel (<= 5bp) 2404613 2405466 245417 244564 CM091768.1 scaffold521 99.88 True local misassembly 2400259 2400835 249946 249370 CM091768.1 scaffold521 99.31 True indel: indel (<= 5bp) 2398831 2400258 251376 249949 CM091768.1 scaffold521 99.51 True indel: indel (<= 5bp) 2398016 2398830 252192 251378 CM091768.1 scaffold521 98.65 True fake: scaffold gap size wrong estimation (local) 2390756 2392920 258803 256639 CM091768.1 scaffold521 99.08 True local misassembly 2388137 2390354 261092 258875 CM091768.1 scaffold521 99.19 True local misassembly 2386165 2386951 263415 262629 CM091768.1 scaffold521 99.24 True local misassembly 2384410 2385145 264855 264120 CM091768.1 scaffold521 99.46 True indel: indel (<= 5bp) 2383314 2383922 265948 265340 CM091768.1 scaffold521 99.84 True local misassembly 2381623 2382382 267634 266875 CM091768.1 scaffold521 99.61 True local misassembly 2378439 2379554 271270 270155 CM091768.1 scaffold521 99.46 True local misassembly 2377179 2378191 272848 271836 CM091768.1 scaffold521 99.61 True indel: indel (> 5bp) 2376420 2376981 273630 273069 CM091768.1 scaffold521 99.47 True CONTIG scaffold521 273792 misassembled 16297378 16298212 1 847 CM091752.1 scaffold522 98.47 True CONTIG scaffold522 847 correct 1260578 1261626 1049 1 CM091753.1 scaffold519 100.0 True indel: stretch of mismatches 1259521 1260422 2106 1205 CM091753.1 scaffold519 100.0 True local misassembly 1254266 1259520 7843 2589 CM091753.1 scaffold519 99.98 True fake: scaffold gap size wrong estimation (local) 1212412 1253379 50209 9157 CM091753.1 scaffold519 99.16 True indel: indel (> 5bp) 1208774 1212354 53866 50286 CM091753.1 scaffold519 99.94 True fake: scaffold gap size wrong estimation (local) 1202834 1207816 60315 55334 CM091753.1 scaffold519 99.52 True indel: indel (> 5bp) 1199922 1202668 63267 60519 CM091753.1 scaffold519 99.53 True local misassembly 1194931 1198282 68505 65069 CM091753.1 scaffold519 97.44 True indel: indel (> 5bp) 1193732 1194860 69722 68594 CM091753.1 scaffold519 100.0 True indel: indel (<= 5bp) 1192988 1193731 70467 69724 CM091753.1 scaffold519 99.73 True local misassembly 1190305 1192251 73449 71503 CM091753.1 scaffold519 99.95 True indel: indel (<= 5bp) 1189731 1190304 74024 73451 CM091753.1 scaffold519 99.83 True fake: scaffold gap size wrong estimation (local) 1172465 1188265 91421 75616 CM091753.1 scaffold519 99.76 True fake: scaffold gap size wrong estimation (local) 1165258 1171215 98573 92616 CM091753.1 scaffold519 99.88 True fake: scaffold gap size wrong estimation (local) 1152366 1164786 112520 100097 CM091753.1 scaffold519 99.9 True fake: scaffold gap size wrong estimation (local) 1104122 1151486 161143 113634 CM091753.1 scaffold519 99.84 True fake: scaffold gap size wrong estimation (local) 1088642 1102680 176474 162437 CM091753.1 scaffold519 99.89 True fake: scaffold gap size wrong estimation (local) 1085960 1088216 179757 177501 CM091753.1 scaffold519 99.73 True fake: scaffold gap size wrong estimation (local) 1070239 1085380 195644 180210 CM091753.1 scaffold519 97.98 True fake: scaffold gap size wrong estimation (local) 1063511 1070120 202373 195727 CM091753.1 scaffold519 99.14 True fake: scaffold gap size wrong estimation (local) 1053201 1063348 213344 203190 CM091753.1 scaffold519 99.73 True fake: scaffold gap size wrong estimation (local) 1050735 1052787 216156 214033 CM091753.1 scaffold519 95.91 True CONTIG scaffold519 216272 correct 17332461 17343429 1 11152 CM091753.1 scaffold511 98.69 True fake: scaffold gap size wrong estimation (local) 17343794 17344464 11522 12192 CM091753.1 scaffold511 99.7 True fake: scaffold gap size wrong estimation (local) 17345243 17349374 12637 16768 CM091753.1 scaffold511 99.83 True fake: scaffold gap size wrong estimation (local) 17349610 17352876 16994 20251 CM091753.1 scaffold511 98.36 True indel: indel (> 5bp) 17352957 17354838 20339 22220 CM091753.1 scaffold511 99.89 True fake: scaffold gap size wrong estimation (local) 17355268 17357251 22803 24846 CM091753.1 scaffold511 99.43 True fake: scaffold gap size wrong estimation (local) 17357430 17360855 25725 29199 CM091753.1 scaffold511 99.12 True fake: scaffold gap size wrong estimation (local) 17360943 17361736 29308 30101 CM091753.1 scaffold511 100.0 True indel: indel (> 5bp) 17361940 17370249 30326 38719 CM091753.1 scaffold511 98.35 True fake: scaffold gap size wrong estimation (local) 17370631 17371867 39750 41004 CM091753.1 scaffold511 99.91 True fake: scaffold gap size wrong estimation (local) 17372253 17375606 42410 45800 CM091753.1 scaffold511 99.16 True fake: scaffold gap size wrong estimation (local) 17376113 17380230 46392 50637 CM091753.1 scaffold511 98.17 True fake: scaffold gap size wrong estimation (local) 17380610 17578226 50963 250962 CM091753.1 scaffold511 99.04 True fake: scaffold gap size wrong estimation (local) 17578266 17578781 251483 251998 CM091753.1 scaffold511 100.0 True local misassembly 17579293 17761472 252186 438279 CM091753.1 scaffold511 98.58 True CONTIG scaffold511 439632 correct CONTIG scaffold525 341 unaligned 12541552 12662676 1 121248 CM091754.1 scaffold524 99.16 True local misassembly 12663017 12742713 121377 201078 CM091754.1 scaffold524 98.79 True indel: stretch of mismatches 12743176 12748422 201541 206798 CM091754.1 scaffold524 99.6 True CONTIG scaffold524 206798 correct CONTIG scaffold526 2955 unaligned CONTIG scaffold527 443 unaligned 5257618 5265041 1 7787 CM091768.1 scaffold529 99.49 True local misassembly 5265810 5373064 8060 115544 CM091768.1 scaffold529 99.75 True CONTIG scaffold529 115544 correct 8599487 8600883 1359 2762 CM091767.1 scaffold530 99.07 True translocation 6436033 6438261 2887 5115 CM091768.1 scaffold530 99.96 True CONTIG scaffold530 5115 misassembled CONTIG scaffold531 404 unaligned 3403552 3406640 3045 1 CM091768.1 scaffold532 98.12 True CONTIG scaffold532 3045 correct CONTIG scaffold533 243 unaligned 2911378 2915872 1 4495 CM091768.1 scaffold534 99.33 True CONTIG scaffold534 4495 correct CONTIG scaffold535 409 unaligned 6406563 6408540 1978 1 CM091760.1 scaffold536 99.8 True indel: indel (<= 5bp) 6405727 6406562 2815 1980 CM091760.1 scaffold536 99.88 True local misassembly 6403544 6405723 5227 3048 CM091760.1 scaffold536 100.0 True indel: indel (<= 5bp) 6402980 6403543 5792 5229 CM091760.1 scaffold536 99.82 True indel: indel (> 5bp) 6400758 6402702 8028 6084 CM091760.1 scaffold536 99.9 True local misassembly 6399268 6400065 8826 8029 CM091760.1 scaffold536 99.62 True CONTIG scaffold536 9735 correct CONTIG scaffold537 1421 unaligned 3535081 3719714 186687 818 CM091763.1 scaffold461 99.32 True local misassembly 3288092 3537035 433282 186688 CM091763.1 scaffold461 97.53 True indel: indel (<= 5bp) 3182061 3288027 541552 433350 CM091763.1 scaffold461 99.43 True local misassembly 3116072 3181526 610903 542271 CM091763.1 scaffold461 99.39 True fake: scaffold gap size wrong estimation (local) 3114389 3115589 612893 611693 CM091763.1 scaffold461 99.67 True fake: scaffold gap size wrong estimation (local) 3106851 3114237 621235 613853 CM091763.1 scaffold461 99.55 True fake: scaffold gap size wrong estimation (local) 3060522 3106680 668317 622133 CM091763.1 scaffold461 99.57 True indel: indel (> 5bp) 2981761 3060437 748644 668353 CM091763.1 scaffold461 98.01 True indel: indel (> 5bp) 2965180 2981579 765232 748842 CM091763.1 scaffold461 99.12 True fake: not a misassembly (possible transposable element) 13858079 13858623 765782 765238 CM091755.1 scaffold461 99.45 True fake: not a misassembly (possible transposable element) 2862330 2965155 868698 765783 CM091763.1 scaffold461 99.38 True fake: not a misassembly (possible transposable element) 11031814 11032691 869818 868941 CM091766.1 scaffold461 99.77 True fake: not a misassembly (possible transposable element) 2836267 2861902 895462 869819 CM091763.1 scaffold461 99.02 True indel: indel (> 5bp) 2829108 2836250 902595 895490 CM091763.1 scaffold461 98.18 True fake: scaffold gap size wrong estimation (local) 2825259 2828169 906854 903875 CM091763.1 scaffold461 98.58 True fake: scaffold gap size wrong estimation (local) 2823659 2825168 908498 906962 CM091763.1 scaffold461 95.54 True fake: scaffold gap size wrong estimation (local) 2821998 2822621 910225 909602 CM091763.1 scaffold461 99.68 True indel: indel (<= 5bp) 2821434 2821997 910790 910227 CM091763.1 scaffold461 98.76 True local misassembly 2818773 2819679 913494 912588 CM091763.1 scaffold461 98.79 True local misassembly 2815274 2817106 915348 913516 CM091763.1 scaffold461 98.91 True local misassembly 2812983 2814220 918005 916768 CM091763.1 scaffold461 99.11 True fake: scaffold gap size wrong estimation (extensive) 2593785 2802272 1127973 919192 CM091763.1 scaffold461 99.3 True local misassembly 2514207 2593678 1208843 1128426 CM091763.1 scaffold461 99.61 True indel: indel (> 5bp) 2486074 2514047 1237278 1208971 CM091763.1 scaffold461 98.3 True fake: scaffold gap size wrong estimation (local) 2316644 2485972 1403358 1237627 CM091763.1 scaffold461 97.56 True fake: not a misassembly (possible transposable element) 2070823 2071472 1403359 1404008 CM091761.1 scaffold461 99.14 True fake: not a misassembly (possible transposable element) 2095094 2316556 1628726 1404009 CM091763.1 scaffold461 99.42 True fake: scaffold gap size wrong estimation (local) 2086670 2094914 1637795 1629422 CM091763.1 scaffold461 97.41 True fake: scaffold gap size wrong estimation (local) 2084914 2086149 1639511 1638276 CM091763.1 scaffold461 99.68 True local misassembly 2051941 2085620 1673157 1639512 CM091763.1 scaffold461 99.2 True indel: indel (> 5bp) 2048819 2051745 1676330 1673400 CM091763.1 scaffold461 99.52 True indel: indel (<= 5bp) 2019462 2048714 1705696 1676431 CM091763.1 scaffold461 98.86 True indel: indel (> 5bp) 1866925 2019427 1858282 1705740 CM091763.1 scaffold461 99.52 True CONTIG scaffold461 1858577 correct CONTIG scaffold538 371 unaligned 6382053 6382667 618 4 CM091760.1 scaffold540 99.67 True fake: scaffold gap size wrong estimation (local) 6380352 6381920 2367 764 CM091760.1 scaffold540 98.41 True CONTIG scaffold540 2367 correct 16310690 16311413 2357 1634 CM091752.1 scaffold539 98.62 True indel: indel (<= 5bp) 16309613 16310688 3433 2358 CM091752.1 scaffold539 97.3 True relocation, inconsistency = 216955 16091247 16092259 3832 4844 CM091752.1 scaffold539 97.24 True indel: indel (> 5bp) 16092502 16093039 5035 5572 CM091752.1 scaffold539 97.4 True indel: indel (<= 5bp) 16093040 16093986 5576 6522 CM091752.1 scaffold539 99.05 True local misassembly 16093398 16094030 6603 7236 CM091752.1 scaffold539 98.11 True CONTIG scaffold539 7314 misassembled 2271450 2300788 475 29974 CM091764.1 scaffold541 99.34 True fake: scaffold gap size wrong estimation (local) 2301159 2326702 30675 56375 CM091764.1 scaffold541 99.18 True local misassembly 2327642 2346536 56688 75589 CM091764.1 scaffold541 99.9 True fake: scaffold gap size wrong estimation (local) 2346634 2351507 75694 80614 CM091764.1 scaffold541 98.76 True local misassembly 2352491 2353265 80615 81389 CM091764.1 scaffold541 100.0 True local misassembly 2353557 2355121 82387 83951 CM091764.1 scaffold541 99.81 True indel: indel (<= 5bp) 2355122 2356717 83953 85548 CM091764.1 scaffold541 99.87 True local misassembly 2355981 2357609 85549 87177 CM091764.1 scaffold541 99.39 True CONTIG scaffold541 87177 correct CONTIG scaffold542 2055 unaligned CONTIG scaffold544 359 unaligned CONTIG scaffold545 4440 unaligned CONTIG scaffold546 688 unaligned 11003826 11015392 1 11627 CM091756.1 scaffold523 98.38 True local misassembly 11016974 11017566 13126 13718 CM091756.1 scaffold523 99.83 True indel: indel (<= 5bp) 11017567 11019066 13720 15219 CM091756.1 scaffold523 99.27 True local misassembly 11020200 11021922 15521 17243 CM091756.1 scaffold523 99.13 True indel: indel (<= 5bp) 11021923 11022674 17246 17997 CM091756.1 scaffold523 99.73 True local misassembly 11025631 11026639 20886 21894 CM091756.1 scaffold523 99.21 True local misassembly 11027250 11028354 22282 23386 CM091756.1 scaffold523 99.46 True local misassembly 11029501 11030207 24543 25249 CM091756.1 scaffold523 98.16 True local misassembly 11030818 11031411 25425 26018 CM091756.1 scaffold523 98.82 True indel: indel (<= 5bp) 11031820 11032354 26429 26963 CM091756.1 scaffold523 99.63 True local misassembly 11033559 11034912 28192 29545 CM091756.1 scaffold523 99.41 True local misassembly 11036393 11037191 31041 31839 CM091756.1 scaffold523 99.25 True local misassembly 11040795 11068700 35943 64857 CM091756.1 scaffold523 96.89 True fake: scaffold gap size wrong estimation (local) 11069138 11229928 70728 232317 CM091756.1 scaffold523 97.74 True indel: indel (> 5bp) 11229993 11249592 232392 252025 CM091756.1 scaffold523 99.06 True indel: indel (> 5bp) 11249703 11521017 252162 528142 CM091756.1 scaffold523 98.53 True local misassembly 11521082 11951603 528881 966783 CM091756.1 scaffold523 98.88 True fake: scaffold gap size wrong estimation (local) 11951774 11955005 967574 970817 CM091756.1 scaffold523 98.74 True CONTIG scaffold523 970817 correct 6286088 6364060 78921 1 CM091760.1 scaffold500 98.62 True fake: scaffold gap size wrong estimation (local) 6215261 6286009 151853 79018 CM091760.1 scaffold500 98.03 True local misassembly 6207868 6209257 155809 154420 CM091760.1 scaffold500 99.86 True indel: indel (> 5bp) 6155007 6207811 208586 155873 CM091760.1 scaffold500 98.9 True local misassembly 6137051 6153497 225946 209796 CM091760.1 scaffold500 97.66 True local misassembly 6130791 6138330 233447 225947 CM091760.1 scaffold500 98.99 True local misassembly 6070605 6124722 293399 239271 CM091760.1 scaffold500 99.73 True indel: indel (> 5bp) 5867286 6070391 498186 293624 CM091760.1 scaffold500 99.44 True fake: scaffold gap size wrong estimation (local) 5847327 5867036 518571 498855 CM091760.1 scaffold500 99.27 True fake: scaffold gap size wrong estimation (local) 5818386 5847031 547713 518930 CM091760.1 scaffold500 99.35 True fake: scaffold gap size wrong estimation (local) 5809942 5818255 558241 548539 CM091760.1 scaffold500 99.22 True fake: scaffold gap size wrong estimation (local) 5760663 5809763 608562 558964 CM091760.1 scaffold500 99.19 True fake: scaffold gap size wrong estimation (local) 5752011 5760567 617987 609408 CM091760.1 scaffold500 99.1 True fake: scaffold gap size wrong estimation (local) 5681870 5752083 692384 618745 CM091760.1 scaffold500 97.7 True fake: scaffold gap size wrong estimation (local) 5661432 5681760 714868 693107 CM091760.1 scaffold500 96.14 True local misassembly 5606827 5663394 772997 714873 CM091760.1 scaffold500 99.49 True fake: scaffold gap size wrong estimation (local) 5541984 5606337 841295 774105 CM091760.1 scaffold500 99.34 True fake: scaffold gap size wrong estimation (local) 5471094 5541861 913672 842405 CM091760.1 scaffold500 98.83 True indel: indel (> 5bp) 5454141 5471024 930582 913723 CM091760.1 scaffold500 99.18 True local misassembly 5452903 5453903 932204 931108 CM091760.1 scaffold500 98.91 True fake: scaffold gap size wrong estimation (local) 5450096 5452797 935219 932517 CM091760.1 scaffold500 99.48 True local misassembly 5373268 5450033 1016100 935378 CM091760.1 scaffold500 98.95 True local misassembly 5262798 5374078 1128132 1016149 CM091760.1 scaffold500 99.26 True local misassembly 5256909 5262460 1134537 1128982 CM091760.1 scaffold500 99.59 True CONTIG scaffold500 1134537 correct CONTIG scaffold549 6460 unaligned 12801194 12801866 1 673 CM091753.1 scaffold550 97.62 True fake: scaffold gap size wrong estimation (local) 12801970 12855477 1521 54987 CM091753.1 scaffold550 99.25 True local misassembly 12855576 12903988 55391 104126 CM091753.1 scaffold550 99.15 True fake: not a misassembly (possible transposable element) 12903112 12904119 105133 104127 CM091753.1 scaffold550 99.09 True fake: not a misassembly (possible transposable element) 12904227 12933716 105168 134622 CM091753.1 scaffold550 98.98 True CONTIG scaffold550 134622 correct CONTIG scaffold551 389 unaligned 1968293 1975866 326 8088 CM091764.1 scaffold552 96.87 True CONTIG scaffold552 8156 correct 17339391 17340111 1145 425 CM091751.1 scaffold553 98.2 True CONTIG scaffold553 4194 correct_unaligned 11536050 11537866 1817 1 CM091765.1 scaffold554 100.0 True CONTIG scaffold554 1817 correct CONTIG scaffold555 356 unaligned 16247539 16248398 1 857 CM091752.1 scaffold556 97.91 True CONTIG scaffold556 857 correct 17002961 17003849 257 1165 CM091752.1 scaffold557 96.92 True CONTIG scaffold557 1165 correct 7939757 7954717 14896 1 CM091767.1 scaffold558 99.5 True local misassembly 7937166 7938797 16787 15157 CM091767.1 scaffold558 99.33 True fake: scaffold gap size wrong estimation (local) 7933904 7934729 22050 21225 CM091767.1 scaffold558 99.15 True local misassembly 7931947 7933607 23711 22051 CM091767.1 scaffold558 99.88 True relocation, inconsistency = 80707 8014829 8022401 24226 32272 CM091767.1 scaffold558 99.28 True fake: scaffold gap size wrong estimation (local) 8022418 8023531 34933 36046 CM091767.1 scaffold558 99.55 True CONTIG scaffold558 36046 misassembled 17328202 17329056 855 1 CM091753.1 scaffold548 99.88 True fake: scaffold gap size wrong estimation (local) 17319750 17326440 11569 4723 CM091753.1 scaffold548 99.08 True fake: scaffold gap size wrong estimation (local) 17318700 17319661 12644 11684 CM091753.1 scaffold548 99.58 True fake: scaffold gap size wrong estimation (local) 17305271 17317974 26736 13631 CM091753.1 scaffold548 95.99 True fake: scaffold gap size wrong estimation (local) 17302340 17305312 30961 27620 CM091753.1 scaffold548 98.52 True fake: scaffold gap size wrong estimation (local) 17298245 17301956 35059 31192 CM091753.1 scaffold548 98.48 True fake: scaffold gap size wrong estimation (local) 17224207 17298130 111548 35170 CM091753.1 scaffold548 99.53 True fake: scaffold gap size wrong estimation (local) 17126846 17223935 210834 112094 CM091753.1 scaffold548 98.7 True local misassembly 17092966 17126693 248702 211760 CM091753.1 scaffold548 98.22 True local misassembly 17047450 17092352 294608 249197 CM091753.1 scaffold548 99.26 True indel: indel (<= 5bp) 17022364 17047187 320482 294870 CM091753.1 scaffold548 99.21 True local misassembly 16989269 17021655 355371 321226 CM091753.1 scaffold548 95.72 True indel: indel (> 5bp) 16959188 16989225 385459 355436 CM091753.1 scaffold548 99.34 True fake: scaffold gap size wrong estimation (local) 16906995 16958943 438768 386286 CM091753.1 scaffold548 99.29 True local misassembly 16875945 16907879 470744 438769 CM091753.1 scaffold548 99.01 True indel: indel (> 5bp) 16821007 16875824 525967 470819 CM091753.1 scaffold548 98.63 True CONTIG scaffold548 525967 correct CONTIG scaffold560 12381 unaligned CONTIG scaffold561 392 unaligned 15846439 15863028 16661 1 CM091757.1 scaffold562 99.67 True indel: indel (> 5bp) 15831091 15845900 32020 17150 CM091757.1 scaffold562 99.56 True local misassembly 15830043 15830829 33383 32597 CM091757.1 scaffold562 98.6 True indel: indel (> 5bp) 15828421 15830042 35017 33396 CM091757.1 scaffold562 99.94 True indel: indel (<= 5bp) 15827717 15828420 35722 35019 CM091757.1 scaffold562 99.86 True local misassembly 15825134 15827716 38578 35996 CM091757.1 scaffold562 100.0 True indel: indel (> 5bp) 15823433 15825133 40321 38621 CM091757.1 scaffold562 100.0 True indel: indel (<= 5bp) 15822646 15823431 41107 40322 CM091757.1 scaffold562 100.0 True indel: indel (<= 5bp) 15820740 15822644 43012 41108 CM091757.1 scaffold562 99.95 True CONTIG scaffold562 43246 correct CONTIG scaffold563 739 unaligned 9544535 9545142 1645 2252 CM091752.1 scaffold564 98.36 True unknown 9558229 9559032 4059 4871 CM091752.1 scaffold564 97.31 True unknown CONTIG scaffold564 5856 mis_unaligned CONTIG scaffold565 393 unaligned 7947933 8021838 1 75508 CM091753.1 scaffold497 99.41 True fake: scaffold gap size wrong estimation (local) 8021960 8032097 76391 86546 CM091753.1 scaffold497 99.49 True indel: indel (<= 5bp) 8032144 8034413 86592 88864 CM091753.1 scaffold497 96.45 True local misassembly 8034477 8084229 89139 140454 CM091753.1 scaffold497 97.86 True local misassembly 8083263 8520393 140455 583254 CM091753.1 scaffold497 98.97 True fake: scaffold gap size wrong estimation (local) 8520488 8858061 584155 916000 CM091753.1 scaffold497 96.31 True inversion 8858350 8858982 916635 916001 CM091753.1 scaffold497 99.37 True relocation, inconsistency = -51110 8857887 8909332 916763 968580 CM091753.1 scaffold497 99.33 True fake: scaffold gap size wrong estimation (local) 8909509 9006245 969840 1067360 CM091753.1 scaffold497 99.43 True local misassembly 9006269 9129843 1067684 1192405 CM091753.1 scaffold497 99.09 True fake: scaffold gap size wrong estimation (local) 9129804 9240894 1194854 1307292 CM091753.1 scaffold497 99.21 True fake: scaffold gap size wrong estimation (local) 9240896 9476936 1307966 1546457 CM091753.1 scaffold497 98.87 True fake: scaffold gap size wrong estimation (local) 9477023 9493321 1547386 1563668 CM091753.1 scaffold497 99.56 True fake: scaffold gap size wrong estimation (local) 9493078 9554119 1564300 1625323 CM091753.1 scaffold497 99.45 True indel: indel (> 5bp) 9554159 9567335 1625384 1639380 CM091753.1 scaffold497 99.67 True fake: scaffold gap size wrong estimation (local) 9567451 10113654 1639876 2193394 CM091753.1 scaffold497 99.27 True fake: scaffold gap size wrong estimation (local) 10114328 10115332 2195059 2196061 CM091753.1 scaffold497 99.5 True fake: scaffold gap size wrong estimation (local) 10115520 10118329 2196911 2199721 CM091753.1 scaffold497 99.64 True fake: scaffold gap size wrong estimation (local) 10118739 10162807 2200909 2246857 CM091753.1 scaffold497 99.62 True indel: indel (> 5bp) 10162881 10221190 2246941 2308581 CM091753.1 scaffold497 99.45 True fake: scaffold gap size wrong estimation (local) 10221314 10299211 2308721 2388526 CM091753.1 scaffold497 99.5 True fake: scaffold gap size wrong estimation (local) 10299303 10329992 2389380 2421067 CM091753.1 scaffold497 98.25 True fake: scaffold gap size wrong estimation (local) 10330208 10550317 2421430 2646670 CM091753.1 scaffold497 99.33 True indel: indel (> 5bp) 10550672 10560031 2647044 2656388 CM091753.1 scaffold497 99.49 True local misassembly 10560323 10581984 2656767 2678420 CM091753.1 scaffold497 99.18 True local misassembly 10583231 10638936 2678421 2734245 CM091753.1 scaffold497 99.32 True local misassembly 10638980 10823042 2734382 2921262 CM091753.1 scaffold497 99.19 True indel: indel (> 5bp) 10823103 10913726 2921342 3013993 CM091753.1 scaffold497 98.71 True CONTIG scaffold497 3014038 misassembled CONTIG scaffold567 392 unaligned CONTIG scaffold568 793 unaligned 3044919 3048476 1846 5403 CM091752.1 scaffold569 99.94 True indel: indel (<= 5bp) 3048477 3049442 5405 6370 CM091752.1 scaffold569 99.59 True fake: scaffold gap size wrong estimation (local) 3050493 3051401 7623 8531 CM091752.1 scaffold569 99.89 True indel: indel (<= 5bp) 3051405 3052170 8532 9297 CM091752.1 scaffold569 99.74 True indel: indel (> 5bp) 3052587 3053107 9795 10315 CM091752.1 scaffold569 99.04 True local misassembly 3056347 3056930 10435 11018 CM091752.1 scaffold569 99.83 True fake: scaffold gap size wrong estimation (local) 3057137 3061964 11369 16196 CM091752.1 scaffold569 99.88 True fake: scaffold gap size wrong estimation (local) 3061965 3062740 16552 17327 CM091752.1 scaffold569 99.48 True CONTIG scaffold569 17327 correct 3576316 3578312 1 1996 CM091768.1 scaffold570 99.95 True fake: not a misassembly (possible transposable element) 9548788 9549754 1997 2964 CM091765.1 scaffold570 99.27 True fake: not a misassembly (possible transposable element) 3578766 3597699 2965 21900 CM091768.1 scaffold570 99.27 True local misassembly 3598293 3608545 22191 32439 CM091768.1 scaffold570 99.87 True local misassembly 3608935 3609770 33234 34069 CM091768.1 scaffold570 100.0 True fake: not a misassembly (possible transposable element) 16636306 16637249 34070 35013 CM091752.1 scaffold570 99.36 True fake: not a misassembly (possible transposable element) 3610584 3613471 35458 38345 CM091768.1 scaffold570 99.97 True indel: indel (<= 5bp) 3613837 3617142 38713 42018 CM091768.1 scaffold570 99.97 True local misassembly 3617840 3618516 42716 43392 CM091768.1 scaffold570 99.56 True local misassembly 3617204 3617923 43394 44113 CM091768.1 scaffold570 99.03 True CONTIG scaffold570 44113 correct CONTIG scaffold571 378 unaligned CONTIG scaffold572 429 unaligned 6061480 6285524 1 229668 CM091761.1 scaffold493 98.77 True indel: indel (> 5bp) 6285613 6558479 229763 508493 CM091761.1 scaffold493 99.29 True fake: scaffold gap size wrong estimation (local) 6558567 6574433 509047 525531 CM091761.1 scaffold493 99.62 True fake: scaffold gap size wrong estimation (local) 6574541 6594528 526178 546236 CM091761.1 scaffold493 99.49 True fake: scaffold gap size wrong estimation (local) 6594677 6764947 547056 725187 CM091761.1 scaffold493 98.79 True indel: indel (> 5bp) 6764976 6892292 725287 855933 CM091761.1 scaffold493 99.54 True indel: indel (> 5bp) 6892393 7041366 856059 1005804 CM091761.1 scaffold493 99.8 True fake: scaffold gap size wrong estimation (local) 7041454 7049137 1006070 1013756 CM091761.1 scaffold493 99.71 True local misassembly 7048061 7118137 1013757 1085944 CM091761.1 scaffold493 98.64 True fake: scaffold gap size wrong estimation (local) 7119050 7124672 1087070 1092796 CM091761.1 scaffold493 99.69 True fake: scaffold gap size wrong estimation (local) 7124792 7218705 1092929 1188695 CM091761.1 scaffold493 99.2 True local misassembly 7218923 7246381 1189335 1217925 CM091761.1 scaffold493 97.71 True fake: scaffold gap size wrong estimation (local) 7248310 7255186 1219571 1226703 CM091761.1 scaffold493 99.8 True fake: scaffold gap size wrong estimation (local) 7255306 7262425 1226830 1234025 CM091761.1 scaffold493 99.24 True indel: indel (> 5bp) 7262629 7266680 1234195 1238319 CM091761.1 scaffold493 98.58 True fake: scaffold gap size wrong estimation (local) 7266965 7283515 1238868 1256005 CM091761.1 scaffold493 99.55 True fake: scaffold gap size wrong estimation (local) 7283850 7297282 1256754 1270353 CM091761.1 scaffold493 99.3 True fake: scaffold gap size wrong estimation (local) 7297388 7314622 1270469 1288487 CM091761.1 scaffold493 98.73 True fake: scaffold gap size wrong estimation (local) 7315478 7367135 1289542 1342853 CM091761.1 scaffold493 99.17 True local misassembly 7367897 7644976 1343542 1624592 CM091761.1 scaffold493 99.38 True indel: indel (<= 5bp) 7645032 7811733 1624653 1796097 CM091761.1 scaffold493 98.69 True indel: indel (> 5bp) 7811742 7951524 1796099 1940798 CM091761.1 scaffold493 98.1 True fake: scaffold gap size wrong estimation (local) 7951641 7956675 1941494 1946515 CM091761.1 scaffold493 99.62 True indel: indel (<= 5bp) 7956739 8099494 1946581 2089327 CM091761.1 scaffold493 99.72 True fake: scaffold gap size wrong estimation (local) 8099605 8159841 2090191 2151565 CM091761.1 scaffold493 99.54 True fake: scaffold gap size wrong estimation (local) 8160212 8254862 2152065 2249047 CM091761.1 scaffold493 99.56 True fake: scaffold gap size wrong estimation (local) 8254983 8267760 2250207 2263513 CM091761.1 scaffold493 95.38 True fake: scaffold gap size wrong estimation (local) 8267944 8470236 2264237 2472551 CM091761.1 scaffold493 99.09 True local misassembly 8470385 8567237 2472575 2571973 CM091761.1 scaffold493 99.45 True CONTIG scaffold493 2572822 correct 15329021 15329748 348 1100 CM091754.1 scaffold573 100.0 True fake: scaffold gap size wrong estimation (local) 15331102 15335427 3233 7642 CM091754.1 scaffold573 99.23 True indel: indel (> 5bp) 15335502 15336734 7738 8980 CM091754.1 scaffold573 99.41 True fake: scaffold gap size wrong estimation (local) 15338428 15339788 10687 12038 CM091754.1 scaffold573 99.12 True fake: scaffold gap size wrong estimation (local) 15339974 15353054 12729 27631 CM091754.1 scaffold573 99.48 True indel: indel (> 5bp) 15353136 15356756 27737 31364 CM091754.1 scaffold573 99.7 True indel: indel (> 5bp) 15356801 15500910 31419 177052 CM091754.1 scaffold573 99.75 True fake: scaffold gap size wrong estimation (local) 15501015 15631780 177460 311626 CM091754.1 scaffold573 97.54 True CONTIG scaffold573 311626 correct 10752316 10755989 3704 1 CM091765.1 scaffold575 98.25 True fake: scaffold gap size wrong estimation (local) 10720729 10751364 35812 4865 CM091765.1 scaffold575 98.46 True local misassembly 10707948 10721091 48981 35846 CM091765.1 scaffold575 99.89 True fake: scaffold gap size wrong estimation (local) 10702174 10707446 55168 49903 CM091765.1 scaffold575 99.83 True CONTIG scaffold575 55168 correct 15151891 15152876 1005 1 CM091757.1 scaffold547 98.01 True fake: scaffold gap size wrong estimation (local) 15059185 15150894 94584 2424 CM091757.1 scaffold547 99.45 True local misassembly 14846758 15060256 309343 94585 CM091757.1 scaffold547 99.57 True local misassembly 14731805 14846725 426574 309752 CM091757.1 scaffold547 98.5 True fake: scaffold gap size wrong estimation (local) 14499174 14731713 662793 426808 CM091757.1 scaffold547 98.54 True local misassembly 14463537 14499959 701214 662826 CM091757.1 scaffold547 99.44 True CONTIG scaffold547 701214 correct CONTIG scaffold577 731 unaligned 4130752 4131494 1 748 CM091752.1 scaffold576 97.99 True CONTIG scaffold576 748 correct 17302777 17303645 1 868 CM091752.1 scaffold579 99.65 True fake: scaffold gap size wrong estimation (local) 17304386 17310448 1974 8055 CM091752.1 scaffold579 99.16 True CONTIG scaffold579 8140 correct 66745 69149 2405 1 CM091763.1 scaffold580 99.71 True CONTIG scaffold580 2405 correct 16064606 16065134 1 547 CM091757.1 scaffold574 98.04 True fake: not a misassembly (possible transposable element) 12182512 12183502 789 1779 CM091752.1 scaffold574 99.6 True fake: not a misassembly (possible transposable element) 16066270 16069085 2350 5166 CM091757.1 scaffold574 99.87 True local misassembly 16073684 16080571 5167 12055 CM091757.1 scaffold574 99.91 True relocation, inconsistency = 258741 16339313 16350493 23286 12056 CM091757.1 scaffold574 99.6 True local misassembly 16337189 16338422 25155 23925 CM091757.1 scaffold574 99.76 True fake: scaffold gap size wrong estimation (local) 16334468 16335001 28012 27479 CM091757.1 scaffold574 100.0 True CONTIG scaffold574 28012 misassembled 5221978 5245869 23921 1 CM091768.1 scaffold581 99.14 True indel: indel (<= 5bp) 5215977 5221914 29940 23981 CM091768.1 scaffold581 99.63 True CONTIG scaffold581 29940 correct CONTIG scaffold583 361 unaligned 15618353 15630337 11994 1 CM091757.1 scaffold578 99.95 True fake: scaffold gap size wrong estimation (local) 15601929 15618148 28667 12386 CM091757.1 scaffold578 99.56 True fake: scaffold gap size wrong estimation (local) 15597694 15601814 33421 29140 CM091757.1 scaffold578 96.1 True local misassembly 15596496 15597564 34776 33694 CM091757.1 scaffold578 98.06 True CONTIG scaffold578 34776 correct CONTIG scaffold585 998 unaligned 4065180 4066433 816 2077 CM091752.1 scaffold584 98.26 True local misassembly 4066512 4069056 2448 4992 CM091752.1 scaffold584 99.88 True CONTIG scaffold584 4992 correct CONTIG scaffold586 685 unaligned 4278314 4279964 1 1654 CM091768.1 scaffold588 99.27 True fake: scaffold gap size wrong estimation (local) 4282271 4286794 2450 7057 CM091768.1 scaffold588 97.77 True fake: scaffold gap size wrong estimation (local) 4286551 4287166 8146 8761 CM091768.1 scaffold588 99.68 True local misassembly 4287487 4288334 8825 9672 CM091768.1 scaffold588 99.53 True CONTIG scaffold588 9672 correct CONTIG scaffold589 340 unaligned 13931552 14145736 1 215228 CM091756.1 scaffold587 99.41 True local misassembly 14146148 14199442 215332 269122 CM091756.1 scaffold587 99.55 True fake: scaffold gap size wrong estimation (local) 14200030 14209512 270242 279602 CM091756.1 scaffold587 98.42 True indel: indel (> 5bp) 14209674 14333634 279793 403489 CM091756.1 scaffold587 98.99 True inversion 14333682 14334751 404585 403515 CM091756.1 scaffold587 99.82 True relocation, inconsistency = -35339 14333650 14369020 404586 440303 CM091756.1 scaffold587 98.51 True local misassembly 14368367 14387400 440304 459323 CM091756.1 scaffold587 98.97 True local misassembly 14386541 14400944 459324 474339 CM091756.1 scaffold587 95.55 True fake: not a misassembly (possible transposable element) 10725947 10727441 475836 474340 CM091756.1 scaffold587 98.78 True fake: not a misassembly (possible transposable element) 14401052 14445100 475837 519966 CM091756.1 scaffold587 99.41 True indel: indel (<= 5bp) 14445254 14445832 520123 520686 CM091756.1 scaffold587 97.06 True local misassembly 14445102 14490100 520693 565694 CM091756.1 scaffold587 99.75 True indel: indel (> 5bp) 14490171 14492029 565788 567666 CM091756.1 scaffold587 98.46 True fake: not a misassembly (possible transposable element) 14399761 14400629 567679 568547 CM091756.1 scaffold587 99.88 True fake: not a misassembly (possible transposable element) 14492142 14493555 568658 570071 CM091756.1 scaffold587 99.79 True fake: scaffold gap size wrong estimation (local) 14494759 14496061 571901 573255 CM091756.1 scaffold587 95.34 True CONTIG scaffold587 573255 misassembled CONTIG scaffold591 432 unaligned CONTIG scaffold592 381 unaligned CONTIG scaffold593 1289 unaligned 8986371 8992292 1805 7725 CM091767.1 scaffold594 99.92 True local misassembly 8994695 8996938 7726 9982 CM091767.1 scaffold594 98.97 True CONTIG scaffold594 9982 correct CONTIG scaffold595 405 unaligned 4276949 4277709 6504 5744 CM091752.1 scaffold596 96.58 True CONTIG scaffold596 7012 correct_unaligned 16724951 16818454 93836 240 CM091753.1 scaffold590 98.84 True local misassembly 16702724 16724652 116397 94511 CM091753.1 scaffold590 99.03 True indel: indel (> 5bp) 16618686 16702674 201410 116433 CM091753.1 scaffold590 98.9 True local misassembly 16588275 16619343 232619 201514 CM091753.1 scaffold590 99.01 True indel: indel (> 5bp) 16581901 16588186 239007 232714 CM091753.1 scaffold590 97.59 True CONTIG scaffold590 239007 correct 6178638 6179778 1162 1 CM091768.1 scaffold597 99.09 True fake: not a misassembly (possible transposable element) 5080982 5083688 1575 4278 CM091768.1 scaffold597 98.89 True fake: not a misassembly (possible transposable element) 6164218 6176432 17124 4515 CM091768.1 scaffold597 97.87 True indel: indel (> 5bp) 6162472 6164153 18903 17222 CM091768.1 scaffold597 100.0 True CONTIG scaffold597 18903 correct CONTIG scaffold599 952 unaligned CONTIG scaffold600 4309 unaligned 2894833 2898580 59 3811 CM091762.1 scaffold601 99.34 True fake: scaffold gap size wrong estimation (local) 2898696 2908508 3984 13817 CM091762.1 scaffold601 99.78 True CONTIG scaffold601 13817 correct 6367381 6369648 1 2318 CM091768.1 scaffold602 97.76 True indel: indel (> 5bp) 6369829 6373642 2482 6316 CM091768.1 scaffold602 99.19 True local misassembly 6373936 6378900 6911 11916 CM091768.1 scaffold602 99.16 True CONTIG scaffold602 11916 correct 5795684 5796231 13 581 CM091768.1 scaffold582 100.0 True fake: scaffold gap size wrong estimation (local) 5797144 5820998 1617 26178 CM091768.1 scaffold582 98.2 True fake: scaffold gap size wrong estimation (local) 5821167 5940462 26337 146155 CM091768.1 scaffold582 99.69 True local misassembly 5940551 6037443 146874 244551 CM091768.1 scaffold582 99.44 True indel: indel (> 5bp) 6037546 6138380 244668 349123 CM091768.1 scaffold582 97.57 True CONTIG scaffold582 349123 correct CONTIG scaffold603 627 unaligned 526153 526657 1 505 CM091764.1 scaffold605 99.41 True CONTIG scaffold605 861 correct CONTIG scaffold604 710 unaligned 5792547 5793205 662 2 CM091768.1 scaffold606 99.7 True local misassembly 5762539 5791480 31596 1812 CM091768.1 scaffold606 99.65 True indel: stretch of mismatches 5742149 5762491 52047 31644 CM091768.1 scaffold606 99.01 True fake: scaffold gap size wrong estimation (local) 5737134 5741967 57138 52230 CM091768.1 scaffold606 99.71 True fake: scaffold gap size wrong estimation (local) 5693519 5736743 102229 58073 CM091768.1 scaffold606 99.78 True CONTIG scaffold606 102229 correct 17761534 17762065 1 532 CM091753.1 scaffold528 95.77 True local misassembly 17761266 17826256 533 65465 CM091753.1 scaffold528 99.14 True local misassembly 17826309 17827784 65880 67365 CM091753.1 scaffold528 99.66 True fake: scaffold gap size wrong estimation (local) 17827954 17865166 67735 105636 CM091753.1 scaffold528 99.2 True fake: scaffold gap size wrong estimation (local) 17865163 17865916 106476 107240 CM091753.1 scaffold528 97.8 True local misassembly 17869523 18253435 107241 501423 CM091753.1 scaffold528 98.53 True fake: scaffold gap size wrong estimation (local) 18253590 18257407 502513 506279 CM091753.1 scaffold528 97.73 True local misassembly 18256360 18265852 506280 516445 CM091753.1 scaffold528 98.4 True fake: scaffold gap size wrong estimation (local) 18266153 18268158 516616 518638 CM091753.1 scaffold528 99.01 True indel: indel (> 5bp) 18268316 18269624 518855 520164 CM091753.1 scaffold528 99.69 True fake: scaffold gap size wrong estimation (local) 18270547 18278150 521256 528825 CM091753.1 scaffold528 99.38 True local misassembly 18278218 18347449 529424 600350 CM091753.1 scaffold528 98.89 True indel: indel (> 5bp) 18347458 18364170 600369 617135 CM091753.1 scaffold528 99.52 True local misassembly 18364346 18367153 617757 620564 CM091753.1 scaffold528 99.96 True local misassembly 18367641 18411902 621070 666700 CM091753.1 scaffold528 96.01 True local misassembly 18411948 18469271 667022 727265 CM091753.1 scaffold528 96.13 True local misassembly 18469330 18487672 727651 746994 CM091753.1 scaffold528 99.81 True fake: not a misassembly (possible transposable element) 8709057 8709970 746995 747909 CM091764.1 scaffold528 99.68 True fake: not a misassembly (possible transposable element) 18487943 18504133 747927 764952 CM091753.1 scaffold528 99.91 True local misassembly 18504272 18507004 765969 768693 CM091753.1 scaffold528 99.2 True fake: scaffold gap size wrong estimation (local) 18514690 18520539 770830 777619 CM091753.1 scaffold528 98.94 True CONTIG scaffold528 777642 correct 17228959 17247539 19217 1 CM091751.1 scaffold543 96.53 True indel: indel (> 5bp) 17009076 17228901 239597 19298 CM091751.1 scaffold543 99.7 True indel: indel (> 5bp) 16990208 17009011 258480 239678 CM091751.1 scaffold543 99.96 True fake: scaffold gap size wrong estimation (local) 16936353 16990350 313390 258888 CM091751.1 scaffold543 98.88 True fake: scaffold gap size wrong estimation (local) 16772822 16935396 478429 314449 CM091751.1 scaffold543 98.81 True local misassembly 16600459 16773856 655777 478430 CM091751.1 scaffold543 99.63 True local misassembly 16550595 16600388 705889 656086 CM091751.1 scaffold543 99.83 True indel: indel (> 5bp) 16524073 16550571 732935 705923 CM091751.1 scaffold543 99.62 True local misassembly 16496518 16523819 760860 733532 CM091751.1 scaffold543 99.59 True local misassembly 16485771 16497777 772889 760861 CM091751.1 scaffold543 99.23 True local misassembly 16312026 16487132 949863 772890 CM091751.1 scaffold543 99.34 True local misassembly 16243381 16312094 1020104 950031 CM091751.1 scaffold543 99.25 True relocation, inconsistency = 17261 16201911 16226119 1044363 1020105 CM091751.1 scaffold543 99.59 True relocation, inconsistency = 30138 15694515 16163204 1526163 1052932 CM091751.1 scaffold543 99.01 True indel: indel (> 5bp) 15670222 15694450 1550465 1526271 CM091751.1 scaffold543 99.24 True fake: not a misassembly (possible transposable element) 15670082 15671329 1550466 1551714 CM091751.1 scaffold543 99.53 True fake: not a misassembly (possible transposable element) 15484445 15669990 1741221 1551733 CM091751.1 scaffold543 99.41 True local misassembly 15481691 15484136 1744365 1741920 CM091751.1 scaffold543 99.92 True CONTIG scaffold543 1748612 misassembled 4424129 4428229 4140 1 CM091754.1 scaffold598 99.03 True fake: scaffold gap size wrong estimation (local) 4392290 4423563 36347 4848 CM091754.1 scaffold598 99.32 True fake: scaffold gap size wrong estimation (local) 4389916 4391783 39426 37547 CM091754.1 scaffold598 99.36 True CONTIG scaffold598 41466 correct 9431342 9437172 1 5791 CM091767.1 scaffold611 98.29 True fake: scaffold gap size wrong estimation (local) 9438194 9441248 7618 10678 CM091767.1 scaffold611 99.38 True local misassembly 9440450 9442422 10679 12650 CM091767.1 scaffold611 99.8 True fake: scaffold gap size wrong estimation (local) 9443354 9445826 13867 16339 CM091767.1 scaffold611 99.76 True local misassembly 9446716 9447267 16340 16891 CM091767.1 scaffold611 99.64 True local misassembly 9447555 9448117 17267 17829 CM091767.1 scaffold611 100.0 True indel: indel (> 5bp) 9448118 9451417 17844 21143 CM091767.1 scaffold611 99.82 True indel: indel (<= 5bp) 9451418 9452740 21145 22467 CM091767.1 scaffold611 99.47 True local misassembly 9452741 9454958 22674 24891 CM091767.1 scaffold611 99.95 True indel: indel (> 5bp) 9455013 9456084 24966 26123 CM091767.1 scaffold611 97.49 True fake: scaffold gap size wrong estimation (local) 9456513 9457779 26575 27841 CM091767.1 scaffold611 98.42 True local misassembly 9457780 9458638 28320 29178 CM091767.1 scaffold611 98.6 True local misassembly 9460430 9462100 29720 31390 CM091767.1 scaffold611 99.94 True CONTIG scaffold611 31390 correct 17024296 17024800 1 505 CM091752.1 scaffold612 100.0 True CONTIG scaffold612 505 correct CONTIG scaffold613 1334 unaligned CONTIG scaffold614 385 unaligned 4303792 4304793 1 1016 CM091768.1 scaffold615 97.54 True CONTIG scaffold615 1016 correct CONTIG scaffold616 389 unaligned CONTIG scaffold617 893 unaligned 59763 61030 1 1283 CM091763.1 scaffold607 97.97 True CONTIG scaffold607 4295 correct_unaligned CONTIG scaffold618 3602 unaligned 17119470 17120131 1 676 CM091752.1 scaffold620 97.05 True CONTIG scaffold620 676 correct CONTIG scaffold619 764 unaligned 16012291 16013026 738 1 CM091752.1 scaffold622 99.32 True CONTIG scaffold622 738 correct CONTIG scaffold623 342 unaligned CONTIG scaffold621 438 unaligned CONTIG scaffold625 256 unaligned 15470563 15471139 577 1 CM091752.1 scaffold624 98.44 True indel: indel (> 5bp) 15469752 15470417 1405 740 CM091752.1 scaffold624 100.0 True local misassembly 15468013 15469454 3350 1909 CM091752.1 scaffold624 100.0 True local misassembly 15462374 15468848 10317 3351 CM091752.1 scaffold624 97.63 True local misassembly 15460222 15463369 13555 10377 CM091752.1 scaffold624 97.86 True CONTIG scaffold624 13555 correct CONTIG scaffold627 415 unaligned CONTIG scaffold628 443 unaligned CONTIG scaffold629 423 unaligned CONTIG scaffold630 430 unaligned 312109 341411 30699 1399 CM091763.1 scaffold608 99.96 True fake: scaffold gap size wrong estimation (local) 291283 311937 51970 31265 CM091763.1 scaffold608 99.66 True fake: scaffold gap size wrong estimation (local) 283345 290966 60389 52688 CM091763.1 scaffold608 99.18 True CONTIG scaffold608 60389 correct CONTIG scaffold631 596 unaligned 13452081 13453128 1048 1 CM091758.1 scaffold632 100.0 True fake: scaffold gap size wrong estimation (local) 13450797 13451716 2660 1715 CM091758.1 scaffold632 98.9 True fake: scaffold gap size wrong estimation (local) 13435920 13450699 17653 2749 CM091758.1 scaffold632 98.45 True CONTIG scaffold632 17653 correct CONTIG scaffold634 3791 unaligned 7934233 7936617 1764 4190 CM091767.1 scaffold635 95.61 True CONTIG scaffold635 4190 correct CONTIG scaffold636 322 unaligned 13241446 13242037 50 641 CM091758.1 scaffold637 99.83 True fake: scaffold gap size wrong estimation (local) 13245366 13246397 1494 2525 CM091758.1 scaffold637 99.81 True indel: indel (> 5bp) 13246480 13250446 2573 6539 CM091758.1 scaffold637 99.85 True local misassembly 13254137 13256901 6540 9304 CM091758.1 scaffold637 99.78 True indel: indel (<= 5bp) 13256902 13260017 9306 12421 CM091758.1 scaffold637 99.94 True indel: indel (<= 5bp) 13260018 13263986 12425 16393 CM091758.1 scaffold637 99.85 True indel: indel (<= 5bp) 13263987 13265170 16395 17578 CM091758.1 scaffold637 100.0 True indel: indel (<= 5bp) 13265171 13266489 17580 18898 CM091758.1 scaffold637 99.92 True indel: indel (<= 5bp) 13266491 13268483 18899 20891 CM091758.1 scaffold637 99.85 True indel: indel (<= 5bp) 13268485 13272994 20892 25401 CM091758.1 scaffold637 99.98 True indel: indel (<= 5bp) 13272995 13275229 25404 27638 CM091758.1 scaffold637 99.91 True indel: indel (<= 5bp) 13275231 13276088 27639 28496 CM091758.1 scaffold637 100.0 True indel: indel (<= 5bp) 13276089 13277055 28498 29464 CM091758.1 scaffold637 99.9 True indel: indel (<= 5bp) 13277388 13278653 29794 31059 CM091758.1 scaffold637 100.0 True indel: indel (<= 5bp) 13278654 13281872 31061 34279 CM091758.1 scaffold637 99.97 True indel: indel (<= 5bp) 13281873 13285981 34281 38389 CM091758.1 scaffold637 100.0 True indel: indel (<= 5bp) 13285983 13287266 38390 39673 CM091758.1 scaffold637 100.0 True indel: indel (<= 5bp) 13287269 13289251 39674 41656 CM091758.1 scaffold637 99.95 True indel: indel (<= 5bp) 13289252 13290153 41658 42559 CM091758.1 scaffold637 99.89 True indel: indel (<= 5bp) 13290549 13293968 42951 46370 CM091758.1 scaffold637 99.85 True indel: indel (<= 5bp) 13293970 13295250 46371 47651 CM091758.1 scaffold637 99.92 True fake: scaffold gap size wrong estimation (local) 13295251 13296965 49200 50914 CM091758.1 scaffold637 95.45 True fake: scaffold gap size wrong estimation (local) 13297168 13298603 51408 52843 CM091758.1 scaffold637 99.86 True local misassembly 13299882 13303399 52911 56289 CM091758.1 scaffold637 95.3 True CONTIG scaffold637 56289 correct 91383 92111 729 1 CM091760.1 scaffold633 100.0 True fake: scaffold gap size wrong estimation (local) 89392 91152 4018 2240 CM091760.1 scaffold633 98.03 True fake: scaffold gap size wrong estimation (local) 86689 88475 7161 5372 CM091760.1 scaffold633 99.66 True fake: scaffold gap size wrong estimation (local) 78928 85036 13742 7633 CM091760.1 scaffold633 99.81 True relocation, inconsistency = 9614 37374 69313 45688 13743 CM091760.1 scaffold633 99.89 True indel: indel (> 5bp) 36310 37293 46777 45794 CM091760.1 scaffold633 99.49 True indel: indel (> 5bp) 34295 36281 48809 46823 CM091760.1 scaffold633 100.0 True fake: scaffold gap size wrong estimation (local) 31081 34294 52084 48871 CM091760.1 scaffold633 99.78 True local misassembly 28065 30151 54764 52678 CM091760.1 scaffold633 100.0 True CONTIG scaffold633 55047 misassembled 6846558 6847534 979 1 CM091763.1 scaffold639 99.7 True translocation 17666029 17668191 980 3143 CM091753.1 scaffold639 99.91 True CONTIG scaffold639 3586 misassembled CONTIG scaffold640 404 unaligned 11280012 11291676 12024 365 CM091765.1 scaffold638 99.11 True indel: indel (<= 5bp) 11278575 11279875 13471 12163 CM091765.1 scaffold638 97.86 True fake: scaffold gap size wrong estimation (local) 11275028 11277229 17047 14829 CM091765.1 scaffold638 98.83 True fake: scaffold gap size wrong estimation (local) 11274581 11275564 18731 17749 CM091765.1 scaffold638 99.39 True fake: scaffold gap size wrong estimation (local) 11236969 11274934 57172 18948 CM091765.1 scaffold638 99.1 True CONTIG scaffold638 57172 correct 15927519 15932416 4897 1 CM091757.1 scaffold641 99.92 True fake: scaffold gap size wrong estimation (local) 15915644 15926605 16739 5687 CM091757.1 scaffold641 98.14 True fake: scaffold gap size wrong estimation (local) 15904468 15914901 27973 17479 CM091757.1 scaffold641 99.4 True local misassembly 15894988 15900660 33695 27974 CM091757.1 scaffold641 98.67 True CONTIG scaffold641 33695 correct 15890009 15890986 1000 1 CM091757.1 scaffold642 99.78 True fake: scaffold gap size wrong estimation (local) 15873059 15889420 18343 1667 CM091757.1 scaffold642 97.73 True fake: scaffold gap size wrong estimation (local) 15868930 15871246 22034 19718 CM091757.1 scaffold642 99.53 True CONTIG scaffold642 22034 correct CONTIG scaffold644 348 unaligned 17297857 17299453 1 1597 CM091751.1 scaffold645 100.0 True fake: scaffold gap size wrong estimation (local) 17299986 17305778 3110 8946 CM091751.1 scaffold645 99.11 True local misassembly 17305901 17312727 9462 16288 CM091751.1 scaffold645 99.97 True fake: scaffold gap size wrong estimation (local) 17313337 17316042 17109 19847 CM091751.1 scaffold645 98.65 True CONTIG scaffold645 19847 correct CONTIG scaffold646 438 unaligned 1215892 1242761 26945 1 CM091764.1 scaffold647 99.64 True indel: indel (> 5bp) 1167397 1215571 75540 27343 CM091764.1 scaffold647 99.74 True indel: indel (<= 5bp) 1098551 1167369 144619 75565 CM091764.1 scaffold647 99.84 True local misassembly 1095695 1097215 146170 144620 CM091764.1 scaffold647 96.46 True local misassembly 1071132 1095312 170555 146208 CM091764.1 scaffold647 98.97 True inversion, scaffold gap is present 1095047 1096196 171478 172630 CM091764.1 scaffold647 98.96 True CONTIG scaffold647 172678 misassembled 9855783 9858765 2985 1 CM091756.1 scaffold648 98.93 True local misassembly 9855737 9856947 4194 2986 CM091756.1 scaffold648 98.6 True local misassembly 9848589 9854310 11640 5859 CM091756.1 scaffold648 98.22 True indel: indel (<= 5bp) 9847252 9848128 12979 12102 CM091756.1 scaffold648 97.95 True CONTIG scaffold648 13657 correct 996230 1051570 56232 651 CM091752.1 scaffold649 98.86 True local misassembly 979121 995808 73460 56507 CM091752.1 scaffold649 98.13 True indel: indel (> 5bp) 940924 979095 111974 73516 CM091752.1 scaffold649 98.06 True fake: scaffold gap size wrong estimation (local) 884640 939719 169551 113344 CM091752.1 scaffold649 99.18 True fake: scaffold gap size wrong estimation (local) 851997 884167 202807 170630 CM091752.1 scaffold649 98.43 True local misassembly 844592 852556 210873 202808 CM091752.1 scaffold649 97.08 True fake: scaffold gap size wrong estimation (local) 838271 844381 217487 211342 CM091752.1 scaffold649 97.62 True local misassembly 793346 837028 261835 217625 CM091752.1 scaffold649 96.35 True fake: scaffold gap size wrong estimation (local) 779979 791813 274265 262912 CM091752.1 scaffold649 95.06 True fake: scaffold gap size wrong estimation (local) 778151 779737 276948 275362 CM091752.1 scaffold649 99.18 True indel: indel (<= 5bp) 776870 777719 278225 277376 CM091752.1 scaffold649 99.76 True indel: indel (<= 5bp) 775693 776547 279397 278543 CM091752.1 scaffold649 99.65 True indel: indel (<= 5bp) 774909 775692 280183 279400 CM091752.1 scaffold649 99.74 True indel: indel (<= 5bp) 773318 774907 281773 280184 CM091752.1 scaffold649 99.69 True indel: indel (> 5bp) 770189 773085 284913 282017 CM091752.1 scaffold649 99.45 True local misassembly 767402 769781 288216 285837 CM091752.1 scaffold649 99.45 True indel: indel (<= 5bp) 766899 767399 288717 288217 CM091752.1 scaffold649 99.6 True local misassembly 766386 766891 289442 288937 CM091752.1 scaffold649 99.8 True indel: indel (<= 5bp) 764597 765947 291229 289879 CM091752.1 scaffold649 99.41 True indel: indel (<= 5bp) 763947 764596 291880 291231 CM091752.1 scaffold649 99.54 True indel: indel (> 5bp) 762879 763618 292931 292192 CM091752.1 scaffold649 99.73 True fake: scaffold gap size wrong estimation (local) 761765 762278 294036 293523 CM091752.1 scaffold649 98.64 True indel: indel (> 5bp) 749825 761536 306025 294312 CM091752.1 scaffold649 99.03 True local misassembly 742852 748254 311424 306026 CM091752.1 scaffold649 99.19 True CONTIG scaffold649 311424 correct CONTIG scaffold650 4393 unaligned CONTIG scaffold651 439 unaligned 9114980 9131456 16136 1 CM091767.1 scaffold652 96.39 True fake: scaffold gap size wrong estimation (local) 9106700 9114568 24724 16793 CM091767.1 scaffold652 99.37 True indel: indel (> 5bp) 9102116 9106395 29271 24996 CM091767.1 scaffold652 99.74 True indel: indel (> 5bp) 9101492 9102054 29909 29347 CM091767.1 scaffold652 99.47 True translocation, scaffold gap is present 1776775 1782268 35957 30464 CM091764.1 scaffold652 99.96 True fake: scaffold gap size wrong estimation (local) 1766554 1776544 46538 36490 CM091764.1 scaffold652 99.51 True fake: scaffold gap size wrong estimation (local) 1763576 1764732 49292 48136 CM091764.1 scaffold652 98.88 True fake: scaffold gap size wrong estimation (local) 1762745 1763270 50182 49657 CM091764.1 scaffold652 99.81 True indel: indel (> 5bp) 1758945 1762719 54058 50217 CM091764.1 scaffold652 98.76 True fake: scaffold gap size wrong estimation (local) 1758101 1758922 56450 55638 CM091764.1 scaffold652 96.35 True CONTIG scaffold652 56450 misassembled CONTIG scaffold653 689 unaligned 10796968 10815116 18216 1 CM091765.1 scaffold654 99.55 True fake: scaffold gap size wrong estimation (local) 10777231 10796759 38282 18681 CM091765.1 scaffold654 99.58 True fake: scaffold gap size wrong estimation (local) 10775722 10776702 40651 39671 CM091765.1 scaffold654 100.0 True CONTIG scaffold654 40651 correct 1598634 1658389 1 60411 CM091764.1 scaffold655 98.45 True CONTIG scaffold655 60411 correct CONTIG scaffold656 500 unaligned 12886163 12886880 717 1 CM091758.1 scaffold657 99.03 True CONTIG scaffold657 717 correct CONTIG scaffold658 983 unaligned CONTIG scaffold659 644 unaligned CONTIG scaffold660 353 unaligned 8299141 8327321 41 28649 CM091765.1 scaffold610 99.13 True indel: indel (> 5bp) 8327557 8333749 28944 35141 CM091765.1 scaffold610 99.39 True local misassembly 8333797 8425949 35595 127744 CM091765.1 scaffold610 99.55 True indel: indel (> 5bp) 8426000 8585170 127805 291892 CM091765.1 scaffold610 96.59 True indel: indel (<= 5bp) 8585331 8604361 292057 311096 CM091765.1 scaffold610 99.26 True local misassembly 8608278 8609063 311097 311884 CM091765.1 scaffold610 98.71 True local misassembly 8604483 8614836 311892 322244 CM091765.1 scaffold610 99.38 True indel: indel (<= 5bp) 8614898 8641141 322308 348554 CM091765.1 scaffold610 97.63 True fake: scaffold gap size wrong estimation (local) 8640903 8914126 348840 624803 CM091765.1 scaffold610 99.16 True fake: scaffold gap size wrong estimation (local) 8914630 8945555 625798 656793 CM091765.1 scaffold610 99.35 True indel: indel (<= 5bp) 8945627 9054521 656862 767847 CM091765.1 scaffold610 98.53 True fake: scaffold gap size wrong estimation (local) 9054562 9244229 768510 962231 CM091765.1 scaffold610 98.57 True fake: scaffold gap size wrong estimation (local) 9244608 9246603 962820 964802 CM091765.1 scaffold610 98.25 True CONTIG scaffold610 964802 correct CONTIG scaffold662 417 unaligned 15808700 15818118 9436 1 CM091757.1 scaffold663 99.74 True fake: scaffold gap size wrong estimation (local) 15781016 15808425 37640 10089 CM091757.1 scaffold663 99.38 True indel: indel (> 5bp) 15772296 15780922 46400 37746 CM091757.1 scaffold663 99.62 True local misassembly 15765039 15771618 53756 47180 CM091757.1 scaffold663 99.92 True CONTIG scaffold663 53756 correct 1660378 1670957 1 10645 CM091764.1 scaffold664 99.25 True fake: scaffold gap size wrong estimation (local) 1673864 1691277 13518 30992 CM091764.1 scaffold664 99.74 True fake: scaffold gap size wrong estimation (local) 1691687 1696297 31631 36245 CM091764.1 scaffold664 99.72 True fake: scaffold gap size wrong estimation (local) 1696500 1698913 37563 39989 CM091764.1 scaffold664 99.01 True CONTIG scaffold664 41928 correct 27229 37742 1157 12142 CM091767.1 scaffold512 95.44 True fake: scaffold gap size wrong estimation (local) 38718 39449 13318 14049 CM091767.1 scaffold512 99.86 True indel: indel (<= 5bp) 39537 43286 14132 17881 CM091767.1 scaffold512 99.92 True local misassembly 43313 45147 18284 20118 CM091767.1 scaffold512 99.95 True indel: indel (> 5bp) 45150 46108 20130 21088 CM091767.1 scaffold512 100.0 True indel: indel (<= 5bp) 46453 47531 21431 22509 CM091767.1 scaffold512 100.0 True indel: indel (> 5bp) 47783 48692 22772 23681 CM091767.1 scaffold512 100.0 True indel: indel (> 5bp) 48693 49857 23758 24922 CM091767.1 scaffold512 99.48 True local misassembly 49877 52428 25311 27862 CM091767.1 scaffold512 99.92 True fake: scaffold gap size wrong estimation (local) 52537 65049 28619 41126 CM091767.1 scaffold512 99.75 True fake: scaffold gap size wrong estimation (local) 65918 84431 42384 61746 CM091767.1 scaffold512 99.16 True fake: scaffold gap size wrong estimation (local) 84540 90534 62763 68705 CM091767.1 scaffold512 98.47 True fake: scaffold gap size wrong estimation (local) 90676 138468 68956 118353 CM091767.1 scaffold512 95.43 True fake: scaffold gap size wrong estimation (local) 138646 178081 119456 159264 CM091767.1 scaffold512 98.86 True fake: scaffold gap size wrong estimation (local) 178286 362248 160172 349819 CM091767.1 scaffold512 99.39 True local misassembly 362296 365608 349959 353281 CM091767.1 scaffold512 99.43 True fake: scaffold gap size wrong estimation (local) 365886 572454 353887 564370 CM091767.1 scaffold512 99.02 True fake: scaffold gap size wrong estimation (local) 572703 579138 565273 571721 CM091767.1 scaffold512 99.5 True local misassembly 578547 580135 571737 573328 CM091767.1 scaffold512 99.62 True local misassembly 580162 659085 573629 652516 CM091767.1 scaffold512 99.4 True inversion, scaffold gap is present 664116 669165 658104 653059 CM091767.1 scaffold512 96.22 True relocation, inconsistency = 8302 677468 781992 658105 764653 CM091767.1 scaffold512 97.76 True indel: indel (<= 5bp) 782048 908461 764713 892163 CM091767.1 scaffold512 98.65 True local misassembly 907662 952007 892164 936859 CM091767.1 scaffold512 99.32 True indel: indel (> 5bp) 952052 1048919 936913 1035704 CM091767.1 scaffold512 99.3 True indel: indel (> 5bp) 1048995 1050823 1035766 1037594 CM091767.1 scaffold512 99.84 True indel: indel (<= 5bp) 1050825 1052661 1037595 1039431 CM091767.1 scaffold512 99.56 True indel: indel (<= 5bp) 1052662 1053549 1039433 1040320 CM091767.1 scaffold512 99.77 True indel: indel (<= 5bp) 1053550 1056364 1040325 1043139 CM091767.1 scaffold512 99.86 True local misassembly 1057009 1057783 1043796 1044570 CM091767.1 scaffold512 99.87 True indel: indel (<= 5bp) 1057786 1058799 1044571 1045584 CM091767.1 scaffold512 99.9 True local misassembly 1059381 1060129 1046167 1046915 CM091767.1 scaffold512 99.87 True indel: indel (<= 5bp) 1060130 1062712 1046917 1049499 CM091767.1 scaffold512 99.77 True indel: indel (<= 5bp) 1062714 1065180 1049500 1051966 CM091767.1 scaffold512 99.88 True indel: indel (<= 5bp) 1065181 1065737 1051971 1052527 CM091767.1 scaffold512 99.82 True indel: indel (<= 5bp) 1065738 1066850 1052531 1053643 CM091767.1 scaffold512 99.64 True indel: indel (<= 5bp) 1066852 1067365 1053644 1054157 CM091767.1 scaffold512 99.61 True local misassembly 1068091 1069293 1054886 1056088 CM091767.1 scaffold512 99.83 True indel: indel (<= 5bp) 1069295 1070097 1056089 1056891 CM091767.1 scaffold512 99.63 True indel: indel (<= 5bp) 1070180 1072561 1056977 1059358 CM091767.1 scaffold512 99.96 True local misassembly 1072933 1076163 1060482 1063712 CM091767.1 scaffold512 99.66 True indel: indel (> 5bp) 1076172 1076993 1063713 1064534 CM091767.1 scaffold512 99.76 True indel: indel (<= 5bp) 1076994 1077896 1064536 1065438 CM091767.1 scaffold512 99.45 True indel: indel (<= 5bp) 1078245 1078808 1065790 1066353 CM091767.1 scaffold512 99.47 True indel: indel (<= 5bp) 1078810 1080961 1066354 1068505 CM091767.1 scaffold512 99.77 True indel: indel (<= 5bp) 1080962 1081937 1068508 1069483 CM091767.1 scaffold512 99.28 True indel: indel (<= 5bp) 1081938 1082454 1069485 1070001 CM091767.1 scaffold512 99.42 True indel: indel (<= 5bp) 1082456 1083305 1070002 1070851 CM091767.1 scaffold512 99.88 True local misassembly 1084112 1084845 1071654 1072387 CM091767.1 scaffold512 99.86 True indel: indel (<= 5bp) 1085276 1088682 1072820 1076226 CM091767.1 scaffold512 99.5 True indel: indel (> 5bp) 1089122 1089900 1076617 1077395 CM091767.1 scaffold512 99.36 True indel: indel (<= 5bp) 1089902 1090599 1077396 1078093 CM091767.1 scaffold512 99.86 True indel: indel (<= 5bp) 1090600 1091167 1078095 1078662 CM091767.1 scaffold512 100.0 True indel: indel (> 5bp) 1091174 1091912 1078663 1079401 CM091767.1 scaffold512 100.0 True indel: indel (<= 5bp) 1091919 1092478 1079412 1079971 CM091767.1 scaffold512 99.46 True indel: indel (<= 5bp) 1092479 1093354 1079973 1080848 CM091767.1 scaffold512 100.0 True indel: indel (> 5bp) 1093355 1095078 1080856 1082579 CM091767.1 scaffold512 99.65 True indel: indel (<= 5bp) 1095079 1095855 1082581 1083357 CM091767.1 scaffold512 100.0 True indel: indel (<= 5bp) 1095856 1096919 1083362 1084425 CM091767.1 scaffold512 99.62 True indel: indel (<= 5bp) 1096925 1098860 1084426 1086361 CM091767.1 scaffold512 99.79 True indel: indel (<= 5bp) 1098874 1100289 1086377 1087792 CM091767.1 scaffold512 99.93 True indel: indel (<= 5bp) 1100290 1101433 1087794 1088937 CM091767.1 scaffold512 99.91 True indel: indel (<= 5bp) 1101598 1102710 1089099 1090211 CM091767.1 scaffold512 99.82 True indel: indel (> 5bp) 1103200 1104595 1090709 1092104 CM091767.1 scaffold512 100.0 True indel: indel (<= 5bp) 1105007 1105534 1092521 1093048 CM091767.1 scaffold512 99.62 True indel: indel (> 5bp) 1105551 1106524 1093049 1094022 CM091767.1 scaffold512 99.69 True indel: stretch of mismatches 1106568 1109103 1094066 1096601 CM091767.1 scaffold512 99.65 True indel: indel (<= 5bp) 1109104 1112219 1096603 1099718 CM091767.1 scaffold512 99.78 True indel: indel (<= 5bp) 1112567 1113071 1100068 1100572 CM091767.1 scaffold512 99.21 True indel: indel (> 5bp) 1113072 1113751 1100580 1101259 CM091767.1 scaffold512 100.0 True local misassembly 1114306 1117875 1101813 1105382 CM091767.1 scaffold512 99.72 True local misassembly 1123452 1124555 1105653 1106756 CM091767.1 scaffold512 99.64 True indel: indel (<= 5bp) 1124556 1126653 1106758 1108855 CM091767.1 scaffold512 99.57 True indel: indel (<= 5bp) 1126654 1129569 1108857 1111772 CM091767.1 scaffold512 99.73 True indel: indel (<= 5bp) 1129858 1132994 1112062 1115198 CM091767.1 scaffold512 99.68 True indel: indel (<= 5bp) 1132995 1137812 1115200 1120017 CM091767.1 scaffold512 99.61 True indel: indel (<= 5bp) 1137813 1138487 1120019 1120693 CM091767.1 scaffold512 99.56 True indel: indel (<= 5bp) 1138489 1139089 1120694 1121294 CM091767.1 scaffold512 100.0 True indel: indel (> 5bp) 1139140 1277156 1121357 1261137 CM091767.1 scaffold512 98.75 True local misassembly 1276184 1288416 1261147 1273161 CM091767.1 scaffold512 97.3 True indel: indel (<= 5bp) 1288503 1359806 1273252 1344568 CM091767.1 scaffold512 99.3 True indel: indel (> 5bp) 1359879 1377972 1344674 1363261 CM091767.1 scaffold512 99.32 True indel: indel (<= 5bp) 1378032 1405092 1363326 1390879 CM091767.1 scaffold512 99.26 True local misassembly 1404107 1617821 1390880 1608109 CM091767.1 scaffold512 98.42 True indel: indel (> 5bp) 1617937 1626186 1608198 1616360 CM091767.1 scaffold512 97.93 True fake: scaffold gap size wrong estimation (local) 1626369 1746188 1616549 1737953 CM091767.1 scaffold512 98.47 True local misassembly 1746282 1759432 1738465 1752167 CM091767.1 scaffold512 99.32 True local misassembly 1757939 1758517 1752168 1752746 CM091767.1 scaffold512 99.66 True indel: indel (> 5bp) 1758531 1761490 1752747 1755706 CM091767.1 scaffold512 99.93 True indel: indel (<= 5bp) 1761491 1762226 1755708 1756443 CM091767.1 scaffold512 99.86 True indel: indel (<= 5bp) 1762228 1764818 1756444 1759034 CM091767.1 scaffold512 99.69 True local misassembly 1766888 1767613 1762546 1763271 CM091767.1 scaffold512 100.0 True indel: indel (<= 5bp) 1767660 1768173 1763320 1763833 CM091767.1 scaffold512 99.61 True indel: indel (<= 5bp) 1768626 1770607 1764288 1766269 CM091767.1 scaffold512 99.5 True indel: indel (<= 5bp) 1770610 1771126 1766270 1766786 CM091767.1 scaffold512 99.42 True indel: stretch of mismatches 1771386 1771999 1767046 1767659 CM091767.1 scaffold512 100.0 True indel: stretch of mismatches 1772311 1773151 1767971 1768811 CM091767.1 scaffold512 99.76 True indel: indel (> 5bp) 1773600 1774408 1769254 1770062 CM091767.1 scaffold512 99.63 True indel: indel (<= 5bp) 1774441 1776089 1770098 1771746 CM091767.1 scaffold512 99.94 True indel: indel (<= 5bp) 1776442 1776965 1772101 1772624 CM091767.1 scaffold512 98.85 True indel: indel (<= 5bp) 1776966 1778215 1772626 1773875 CM091767.1 scaffold512 99.92 True indel: indel (<= 5bp) 1778340 1778987 1774001 1774648 CM091767.1 scaffold512 100.0 True indel: indel (<= 5bp) 1779404 1780147 1775067 1775810 CM091767.1 scaffold512 99.46 True indel: indel (> 5bp) 1780157 1780900 1775811 1776554 CM091767.1 scaffold512 99.87 True indel: indel (> 5bp) 1780923 1781501 1776555 1777133 CM091767.1 scaffold512 99.31 True indel: stretch of mismatches 1781581 1783194 1777213 1778826 CM091767.1 scaffold512 99.88 True indel: indel (<= 5bp) 1783198 1785011 1778827 1780640 CM091767.1 scaffold512 99.83 True indel: indel (<= 5bp) 1785090 1786184 1780718 1781812 CM091767.1 scaffold512 99.91 True indel: indel (<= 5bp) 1786289 2044532 1781922 2045841 CM091767.1 scaffold512 99.24 True indel: stretch of mismatches 2044564 2114287 2045873 2115487 CM091767.1 scaffold512 98.91 True indel: indel (<= 5bp) 2114414 2163052 2115616 2164442 CM091767.1 scaffold512 99.37 True local misassembly 2163134 2178177 2164798 2179882 CM091767.1 scaffold512 99.5 True indel: indel (> 5bp) 2178277 2216722 2180008 2218469 CM091767.1 scaffold512 98.09 True indel: indel (> 5bp) 2216776 2218505 2218509 2220243 CM091767.1 scaffold512 99.42 True local misassembly 2218744 2228523 2220896 2230662 CM091767.1 scaffold512 98.93 True indel: indel (> 5bp) 2228572 2232240 2230696 2234353 CM091767.1 scaffold512 99.4 True local misassembly 2232577 2295110 2234400 2297415 CM091767.1 scaffold512 99.08 True indel: indel (<= 5bp) 2295142 2305745 2297448 2308090 CM091767.1 scaffold512 99.17 True fake: scaffold gap size wrong estimation (local) 2305867 2339791 2308370 2343070 CM091767.1 scaffold512 98.21 True fake: scaffold gap size wrong estimation (local) 2340500 2341076 2344164 2344740 CM091767.1 scaffold512 99.48 True CONTIG scaffold512 2345211 misassembled CONTIG scaffold665 1213 unaligned 167199 172827 5697 1 CM091764.1 scaffold667 98.75 True local misassembly 164279 166717 8862 6424 CM091764.1 scaffold667 99.96 True local misassembly 160697 165248 13506 8863 CM091764.1 scaffold667 97.83 True fake: scaffold gap size wrong estimation (local) 158694 160276 15924 14324 CM091764.1 scaffold667 98.88 True CONTIG scaffold667 15924 correct 12051927 12101676 50738 1 CM091762.1 scaffold559 97.77 True fake: scaffold gap size wrong estimation (local) 12048818 12049561 55299 54556 CM091762.1 scaffold559 100.0 True indel: indel (<= 5bp) 12047706 12048817 56412 55301 CM091762.1 scaffold559 100.0 True indel: indel (<= 5bp) 12044960 12047704 59157 56413 CM091762.1 scaffold559 100.0 True indel: indel (<= 5bp) 12043385 12044958 60731 59158 CM091762.1 scaffold559 100.0 True local misassembly 12040272 12043297 65154 62129 CM091762.1 scaffold559 99.93 True indel: indel (<= 5bp) 12036939 12040270 68486 65155 CM091762.1 scaffold559 99.94 True fake: scaffold gap size wrong estimation (local) 12003489 12036535 103147 69657 CM091762.1 scaffold559 98.62 True local misassembly 11990526 12004457 117075 103148 CM091762.1 scaffold559 99.9 True local misassembly 11831887 11990405 278155 118183 CM091762.1 scaffold559 99.31 True indel: indel (> 5bp) 11483770 11831846 631021 278183 CM091762.1 scaffold559 99.11 True fake: scaffold gap size wrong estimation (local) 11471311 11483532 645467 632658 CM091762.1 scaffold559 99.39 True fake: scaffold gap size wrong estimation (local) 11468854 11470822 648204 646206 CM091762.1 scaffold559 99.43 True fake: scaffold gap size wrong estimation (local) 11465959 11468061 657508 655396 CM091762.1 scaffold559 99.9 True fake: scaffold gap size wrong estimation (local) 11456627 11465212 667269 658103 CM091762.1 scaffold559 99.4 True fake: scaffold gap size wrong estimation (local) 11452223 11456514 673184 668146 CM091762.1 scaffold559 99.46 True fake: scaffold gap size wrong estimation (local) 11443765 11451592 681312 673441 CM091762.1 scaffold559 98.26 True indel: indel (> 5bp) 11388931 11443627 738273 681513 CM091762.1 scaffold559 99.39 True fake: scaffold gap size wrong estimation (local) 11386168 11388841 741827 739147 CM091762.1 scaffold559 99.52 True fake: scaffold gap size wrong estimation (local) 11384457 11385889 744264 742809 CM091762.1 scaffold559 98.82 True fake: scaffold gap size wrong estimation (local) 11304837 11382618 825117 745830 CM091762.1 scaffold559 99.66 True fake: scaffold gap size wrong estimation (local) 11061597 11304507 1071704 825640 CM091762.1 scaffold559 99.25 True indel: indel (> 5bp) 11014882 11061540 1119186 1071743 CM091762.1 scaffold559 99.11 True indel: indel (> 5bp) 10900757 11014778 1235566 1119296 CM091762.1 scaffold559 99.17 True indel: indel (> 5bp) 10847329 10900704 1289872 1235589 CM091762.1 scaffold559 99.34 True indel: indel (> 5bp) 10834111 10847275 1303103 1289940 CM091762.1 scaffold559 99.11 True fake: scaffold gap size wrong estimation (local) 10647064 10834294 1493129 1303488 CM091762.1 scaffold559 98.66 True indel: indel (> 5bp) 10622591 10647002 1518026 1493213 CM091762.1 scaffold559 97.73 True indel: indel (> 5bp) 10578762 10622274 1561897 1518375 CM091762.1 scaffold559 99.42 True indel: indel (> 5bp) 10423537 10578709 1720579 1561939 CM091762.1 scaffold559 98.94 True local misassembly 10268628 10424600 1881633 1720663 CM091762.1 scaffold559 98.97 True fake: scaffold gap size wrong estimation (local) 10267698 10268420 1882932 1882210 CM091762.1 scaffold559 99.72 True local misassembly 10265605 10266525 1885038 1884118 CM091762.1 scaffold559 99.35 True fake: scaffold gap size wrong estimation (local) 10263976 10265604 1887050 1885422 CM091762.1 scaffold559 99.63 True indel: indel (<= 5bp) 10263369 10263964 1887659 1887064 CM091762.1 scaffold559 99.5 True indel: indel (<= 5bp) 10262628 10263368 1888401 1887661 CM091762.1 scaffold559 98.92 True indel: indel (<= 5bp) 10261256 10262627 1889775 1888404 CM091762.1 scaffold559 99.56 True indel: indel (<= 5bp) 10260083 10260892 1890950 1890141 CM091762.1 scaffold559 99.88 True local misassembly 10259259 10259777 1892165 1891647 CM091762.1 scaffold559 99.61 True indel: indel (<= 5bp) 10258311 10259257 1893112 1892166 CM091762.1 scaffold559 99.58 True local misassembly 10136815 10258284 2017116 1894167 CM091762.1 scaffold559 99.06 True indel: indel (> 5bp) 10017765 10136686 2137492 2017283 CM091762.1 scaffold559 99.1 True indel: indel (> 5bp) 9989460 10017716 2166137 2137554 CM091762.1 scaffold559 99.46 True local misassembly 9875090 9988741 2282566 2166906 CM091762.1 scaffold559 99.22 True fake: scaffold gap size wrong estimation (local) 9834342 9874342 2323532 2282996 CM091762.1 scaffold559 98.07 True fake: not a misassembly (possible transposable element) 9750151 9751234 2324627 2323544 CM091766.1 scaffold559 99.82 True fake: not a misassembly (possible transposable element) 9774903 9834306 2385507 2324628 CM091762.1 scaffold559 98.6 True indel: indel (> 5bp) 9726024 9774844 2434448 2385629 CM091762.1 scaffold559 99.42 True fake: scaffold gap size wrong estimation (local) 9668009 9725760 2493717 2435207 CM091762.1 scaffold559 99.29 True local misassembly 9624738 9668601 2537642 2493747 CM091762.1 scaffold559 99.19 True local misassembly 9574273 9624733 2588828 2538192 CM091762.1 scaffold559 99.25 True local misassembly 9567326 9568534 2590026 2588829 CM091762.1 scaffold559 97.44 True relocation, inconsistency = -7599 9569221 9574875 2595743 2590076 CM091762.1 scaffold559 98.91 True local misassembly 9523566 9568572 2641859 2596280 CM091762.1 scaffold559 98.67 True local misassembly 9507922 9523543 2657892 2642265 CM091762.1 scaffold559 99.58 True local misassembly 9445447 9508878 2722579 2657893 CM091762.1 scaffold559 99.31 True local misassembly 9335751 9445392 2836354 2722885 CM091762.1 scaffold559 99.19 True indel: indel (> 5bp) 9318539 9335616 2853628 2836547 CM091762.1 scaffold559 99.41 True indel: indel (> 5bp) 9226322 9318421 2947802 2853791 CM091762.1 scaffold559 99.23 True indel: indel (<= 5bp) 9196380 9226321 2979012 2947804 CM091762.1 scaffold559 97.58 True CONTIG scaffold559 2979323 misassembled 16291202 16299115 1 7922 CM091757.1 scaffold668 99.84 True indel: indel (> 5bp) 16299231 16312750 8045 21665 CM091757.1 scaffold668 99.4 True fake: scaffold gap size wrong estimation (local) 16313453 16316574 22514 25635 CM091757.1 scaffold668 99.9 True fake: scaffold gap size wrong estimation (local) 16317168 16325040 25996 33926 CM091757.1 scaffold668 99.23 True indel: indel (> 5bp) 16325096 16326426 33999 35329 CM091757.1 scaffold668 99.55 True fake: scaffold gap size wrong estimation (local) 16326515 16332957 35945 42450 CM091757.1 scaffold668 99.38 True CONTIG scaffold668 42450 correct 1373965 1374849 14412 15299 CM091755.1 scaffold661 97.97 True CONTIG scaffold661 17048 correct_unaligned 7837810 7838698 1 889 CM091767.1 scaffold671 99.89 True CONTIG scaffold671 889 correct 1445448 1448808 2180 5607 CM091764.1 scaffold670 97.08 True fake: scaffold gap size wrong estimation (local) 1449271 1451265 6694 8714 CM091764.1 scaffold670 98.66 True fake: scaffold gap size wrong estimation (local) 1452495 1453384 10656 11545 CM091764.1 scaffold670 100.0 True CONTIG scaffold670 11545 correct 4535730 4548301 20 12582 CM091761.1 scaffold666 99.31 True inversion 4532299 4535318 15896 12884 CM091761.1 scaffold666 97.62 True local misassembly 4531000 4531778 16675 15897 CM091761.1 scaffold666 99.08 True local misassembly 4529266 4530496 18428 17198 CM091761.1 scaffold666 99.51 True local misassembly 4528367 4528885 18953 18435 CM091761.1 scaffold666 98.65 True indel: indel (<= 5bp) 4527852 4528366 19470 18956 CM091761.1 scaffold666 99.03 True indel: stretch of mismatches 4526907 4527511 20415 19811 CM091761.1 scaffold666 97.52 True indel: indel (> 5bp) 4521276 4526674 26245 20666 CM091761.1 scaffold666 97.81 True indel: indel (> 5bp) 4505417 4521057 42495 26503 CM091761.1 scaffold666 99.17 True indel: indel (> 5bp) 4490020 4505315 58314 42545 CM091761.1 scaffold666 99.27 True local misassembly 4486359 4489354 62174 59179 CM091761.1 scaffold666 98.83 True fake: scaffold gap size wrong estimation (local) 4482697 4485828 66519 63372 CM091761.1 scaffold666 98.76 True fake: scaffold gap size wrong estimation (local) 4478850 4482167 70492 67145 CM091761.1 scaffold666 97.38 True indel: stretch of mismatches 4451442 4478735 97854 70607 CM091761.1 scaffold666 97.81 True local misassembly 4440044 4451255 109574 98141 CM091761.1 scaffold666 97.09 True indel: indel (> 5bp) 4438677 4439819 111022 109879 CM091761.1 scaffold666 98.78 True relocation, inconsistency = 188760 4628580 4896941 111023 381401 CM091761.1 scaffold666 99.08 True indel: indel (<= 5bp) 4896966 4987778 381429 472418 CM091761.1 scaffold666 98.87 True fake: not a misassembly (possible transposable element) 4986289 4987511 473642 472419 CM091761.1 scaffold666 99.62 True fake: not a misassembly (possible transposable element) 4988299 4997257 473643 482594 CM091761.1 scaffold666 99.3 True local misassembly 4997332 5019758 483075 505548 CM091761.1 scaffold666 98.83 True relocation, inconsistency = 20834 5040593 5068047 532609 505549 CM091761.1 scaffold666 97.39 True indel: indel (> 5bp) 5020555 5040443 553137 532732 CM091761.1 scaffold666 98.19 True CONTIG scaffold666 553137 misassembled CONTIG scaffold674 402 unaligned 5425672 5435683 10440 1 CM091758.1 scaffold566 99.12 True fake: scaffold gap size wrong estimation (local) 5406694 5425564 31403 10547 CM091758.1 scaffold566 96.93 True fake: scaffold gap size wrong estimation (local) 5405432 5406103 32699 32010 CM091758.1 scaffold566 99.24 True indel: indel (> 5bp) 5402717 5405265 35446 32875 CM091758.1 scaffold566 99.12 True indel: stretch of mismatches 5398402 5402618 40228 35545 CM091758.1 scaffold566 99.24 True fake: scaffold gap size wrong estimation (local) 5394010 5398284 44666 40348 CM091758.1 scaffold566 99.76 True fake: scaffold gap size wrong estimation (local) 5369541 5393808 70753 44853 CM091758.1 scaffold566 99.66 True fake: scaffold gap size wrong estimation (local) 5359141 5369310 82063 71327 CM091758.1 scaffold566 99.62 True fake: scaffold gap size wrong estimation (local) 5317469 5358999 126810 83408 CM091758.1 scaffold566 99.3 True local misassembly 5273698 5317007 172205 127352 CM091758.1 scaffold566 99.57 True fake: scaffold gap size wrong estimation (local) 5247938 5273317 199770 172953 CM091758.1 scaffold566 99.58 True fake: scaffold gap size wrong estimation (local) 5161541 5247784 291616 200122 CM091758.1 scaffold566 99.27 True fake: scaffold gap size wrong estimation (local) 5139412 5161447 314526 291721 CM091758.1 scaffold566 97.99 True fake: scaffold gap size wrong estimation (local) 5103715 5139287 354022 314681 CM091758.1 scaffold566 98.13 True fake: scaffold gap size wrong estimation (local) 5025610 5103633 434378 354255 CM091758.1 scaffold566 99.53 True fake: scaffold gap size wrong estimation (local) 4892842 5025498 576723 435141 CM091758.1 scaffold566 98.84 True local misassembly 4862669 4892403 607696 577404 CM091758.1 scaffold566 99.31 True indel: indel (> 5bp) 4838857 4862540 633262 607795 CM091758.1 scaffold566 97.6 True fake: scaffold gap size wrong estimation (local) 4837979 4838722 634148 633405 CM091758.1 scaffold566 99.87 True fake: scaffold gap size wrong estimation (local) 4823688 4837801 650196 634502 CM091758.1 scaffold566 99.61 True fake: scaffold gap size wrong estimation (local) 4736077 4823274 738919 650545 CM091758.1 scaffold566 99.16 True local misassembly 4617562 4735558 859884 739489 CM091758.1 scaffold566 99.47 True fake: scaffold gap size wrong estimation (local) 4596862 4617460 882857 860270 CM091758.1 scaffold566 99.42 True local misassembly 4272802 4597994 1212458 882858 CM091758.1 scaffold566 99.66 True fake: scaffold gap size wrong estimation (local) 4178037 4272523 1310800 1213310 CM091758.1 scaffold566 99.17 True fake: scaffold gap size wrong estimation (local) 4169884 4177250 1319381 1311880 CM091758.1 scaffold566 99.54 True fake: scaffold gap size wrong estimation (local) 4152930 4169776 1340045 1320245 CM091758.1 scaffold566 99.4 True fake: scaffold gap size wrong estimation (local) 4110195 4152845 1387705 1340949 CM091758.1 scaffold566 98.11 True local misassembly 4106899 4109992 1391443 1388352 CM091758.1 scaffold566 99.61 True indel: indel (> 5bp) 4077871 4106636 1420456 1391680 CM091758.1 scaffold566 99.86 True local misassembly 4038167 4077803 1460285 1420631 CM091758.1 scaffold566 99.51 True indel: indel (> 5bp) 4013907 4037743 1486025 1460683 CM091758.1 scaffold566 99.59 True fake: scaffold gap size wrong estimation (local) 3994717 4013809 1506289 1486871 CM091758.1 scaffold566 98.11 True indel: indel (> 5bp) 3933468 3994643 1568659 1506342 CM091758.1 scaffold566 99.42 True indel: indel (> 5bp) 3689042 3933360 1817768 1568731 CM091758.1 scaffold566 99.08 True local misassembly 3688182 3688860 1818508 1817830 CM091758.1 scaffold566 100.0 True local misassembly 3686185 3688163 1820888 1818910 CM091758.1 scaffold566 99.6 True indel: indel (<= 5bp) 3685381 3686183 1821691 1820889 CM091758.1 scaffold566 99.88 True fake: not a misassembly (possible transposable element) 3685099 3685947 1822127 1822976 CM091758.1 scaffold566 99.53 True fake: not a misassembly (possible transposable element) 3593255 3684862 1914655 1822977 CM091758.1 scaffold566 99.73 True fake: not a misassembly (possible transposable element) 3609236 3610161 1915581 1914656 CM091758.1 scaffold566 98.49 True fake: not a misassembly (possible transposable element) 3531720 3593255 1977939 1915582 CM091758.1 scaffold566 99.55 True indel: indel (> 5bp) 3359396 3531469 2155380 1978155 CM091758.1 scaffold566 99.28 True indel: indel (> 5bp) 3352696 3359353 2162519 2155390 CM091758.1 scaffold566 98.92 True indel: indel (> 5bp) 3306961 3352599 2209093 2162547 CM091758.1 scaffold566 98.61 True CONTIG scaffold566 2209093 correct 16992803 16993405 603 1 CM091752.1 scaffold676 99.0 True CONTIG scaffold676 1100 correct 174877 189286 1 14682 CM091764.1 scaffold672 97.97 True fake: scaffold gap size wrong estimation (local) 189606 221123 15223 46802 CM091764.1 scaffold672 99.72 True CONTIG scaffold672 49172 correct CONTIG scaffold678 490 unaligned CONTIG scaffold679 473 unaligned CONTIG scaffold680 430 unaligned CONTIG scaffold681 1069 unaligned 11353911 11357673 3959 7772 CM091758.1 scaffold643 98.32 True fake: scaffold gap size wrong estimation (local) 11357714 11367873 8570 18725 CM091758.1 scaffold643 99.8 True local misassembly 11368236 11375990 19246 27127 CM091758.1 scaffold643 99.61 True indel: indel (> 5bp) 11376088 11389330 27186 40428 CM091758.1 scaffold643 99.57 True fake: not a misassembly (possible transposable element) 738031 738843 41355 40541 CM091756.1 scaffold643 97.01 True fake: not a misassembly (possible transposable element) 11389471 11532651 41356 185389 CM091758.1 scaffold643 98.31 True fake: scaffold gap size wrong estimation (local) 11532828 11657366 185892 311860 CM091758.1 scaffold643 99.54 True fake: scaffold gap size wrong estimation (local) 11657470 11757092 312877 413930 CM091758.1 scaffold643 99.34 True fake: not a misassembly (possible transposable element) 15804335 15805083 413931 414679 CM091755.1 scaffold643 99.64 True fake: not a misassembly (possible transposable element) 11757153 11766745 414680 424273 CM091758.1 scaffold643 99.91 True fake: scaffold gap size wrong estimation (local) 11767456 11768701 425090 426342 CM091758.1 scaffold643 96.81 True indel: indel (> 5bp) 11768814 11769314 426477 427001 CM091758.1 scaffold643 99.8 True local misassembly 11771704 11805026 429336 463732 CM091758.1 scaffold643 99.83 True fake: scaffold gap size wrong estimation (local) 11805374 11815811 464164 475085 CM091758.1 scaffold643 95.33 True local misassembly 11815012 11825917 475096 485554 CM091758.1 scaffold643 95.48 True CONTIG scaffold643 488001 correct 3349645 3353082 3471 1 CM091768.1 scaffold682 98.61 True indel: indel (> 5bp) 3346145 3349612 7116 3532 CM091768.1 scaffold682 95.32 True fake: not a misassembly (possible transposable element) 3364730 3366492 8879 7117 CM091768.1 scaffold682 97.65 True fake: not a misassembly (possible transposable element) 3342393 3345474 12122 9018 CM091768.1 scaffold682 99.19 True CONTIG scaffold682 12122 correct CONTIG scaffold677 1079 unaligned 9361715 9365969 4503 1 CM091752.1 scaffold683 95.77 True indel: indel (<= 5bp) 9358805 9361517 7427 4698 CM091752.1 scaffold683 99.19 True fake: scaffold gap size wrong estimation (local) 9356007 9358660 10242 7559 CM091752.1 scaffold683 98.73 True CONTIG scaffold683 10386 correct 4333034 4333661 626 1 CM091754.1 scaffold686 99.68 True CONTIG scaffold686 626 correct 1816221 1827689 1 11679 CM091764.1 scaffold687 97.42 True CONTIG scaffold687 11679 correct 16250711 16251299 589 1 CM091752.1 scaffold688 100.0 True CONTIG scaffold688 589 correct CONTIG scaffold675 9986 unaligned 20478304 20478869 1938 2503 CM091751.1 scaffold684 99.82 True unknown 20480823 20482075 5396 6647 CM091751.1 scaffold684 99.84 True unknown 20484016 20484586 8605 9175 CM091751.1 scaffold684 99.65 True unknown CONTIG scaffold684 9175 mis_unaligned 1245651 1258149 421 12929 CM091764.1 scaffold673 99.61 True indel: indel (> 5bp) 1258191 1280512 12977 36692 CM091764.1 scaffold673 96.94 True fake: scaffold gap size wrong estimation (local) 1280715 1351762 37424 109539 CM091764.1 scaffold673 98.45 True CONTIG scaffold673 109539 correct CONTIG scaffold690 417 unaligned 9119299 9302018 1 184426 CM091760.1 scaffold609 98.43 True local misassembly 9302263 9358474 184492 240724 CM091760.1 scaffold609 99.32 True fake: scaffold gap size wrong estimation (local) 9358735 9378818 241750 262617 CM091760.1 scaffold609 99.53 True fake: scaffold gap size wrong estimation (local) 9379435 9393689 263525 278843 CM091760.1 scaffold609 99.24 True indel: indel (> 5bp) 9393740 9811908 278923 704392 CM091760.1 scaffold609 99.15 True indel: indel (> 5bp) 9811957 9942921 704451 840591 CM091760.1 scaffold609 98.42 True local misassembly 9941847 10098850 840592 1000438 CM091760.1 scaffold609 99.7 True fake: scaffold gap size wrong estimation (local) 10098646 10106637 1001067 1009122 CM091760.1 scaffold609 99.02 True CONTIG scaffold609 1009122 correct 7588977 7633375 46019 725 CM091760.1 scaffold626 99.71 True indel: indel (> 5bp) 7543271 7588941 92111 46045 CM091760.1 scaffold626 97.89 True indel: indel (> 5bp) 7463771 7543052 171477 92295 CM091760.1 scaffold626 98.72 True indel: indel (<= 5bp) 7133385 7463715 506184 171534 CM091760.1 scaffold626 98.53 True indel: indel (> 5bp) 7114296 7133329 525823 506248 CM091760.1 scaffold626 99.65 True indel: indel (> 5bp) 6909206 7114227 733549 525904 CM091760.1 scaffold626 99.18 True fake: scaffold gap size wrong estimation (local) 6831564 6909076 811235 733690 CM091760.1 scaffold626 99.63 True fake: scaffold gap size wrong estimation (local) 6719772 6831422 925151 811791 CM091760.1 scaffold626 98.89 True indel: indel (> 5bp) 6692867 6719636 952059 925308 CM091760.1 scaffold626 99.34 True local misassembly 6684262 6694772 962510 952073 CM091760.1 scaffold626 98.75 True indel: indel (<= 5bp) 6683664 6684223 963108 962546 CM091760.1 scaffold626 99.47 True fake: scaffold gap size wrong estimation (local) 6410905 6683611 1242613 964189 CM091760.1 scaffold626 98.28 True fake: scaffold gap size wrong estimation (local) 6409774 6410300 1244968 1244441 CM091760.1 scaffold626 99.39 True CONTIG scaffold626 1244968 correct CONTIG scaffold695 407 unaligned 17525508 17527248 1 1736 CM091751.1 scaffold696 99.42 True fake: scaffold gap size wrong estimation (local) 17527743 17534221 2545 9147 CM091751.1 scaffold696 98.09 True CONTIG scaffold696 9147 correct CONTIG scaffold694 1465 unaligned 4072335 4073671 630 1964 CM091752.1 scaffold697 99.55 True CONTIG scaffold697 1964 correct 3845809 3920795 75022 1 CM091757.1 scaffold669 99.36 True indel: indel (> 5bp) 3789297 3845752 131406 75086 CM091757.1 scaffold669 99.39 True local misassembly 3727441 3789020 194453 131571 CM091757.1 scaffold669 96.57 True local misassembly 3724416 3728199 198259 194514 CM091757.1 scaffold669 98.18 True local misassembly 3571514 3725326 354530 198288 CM091757.1 scaffold669 98.35 True local misassembly 3566487 3571409 359741 354823 CM091757.1 scaffold669 99.09 True fake: scaffold gap size wrong estimation (local) 3361647 3566734 566338 360258 CM091757.1 scaffold669 99.06 True local misassembly 3323005 3361577 605744 566756 CM091757.1 scaffold669 98.33 True local misassembly 3311847 3322842 617002 606007 CM091757.1 scaffold669 99.51 True indel: indel (<= 5bp) 3308425 3311596 620425 617252 CM091757.1 scaffold669 99.05 True indel: indel (<= 5bp) 3306579 3308267 622270 620581 CM091757.1 scaffold669 99.64 True indel: indel (<= 5bp) 3305664 3306553 623192 622299 CM091757.1 scaffold669 98.55 True indel: indel (> 5bp) 3288068 3305331 641011 623583 CM091757.1 scaffold669 98.53 True CONTIG scaffold669 641011 correct 19346956 19348737 1804 17 CM091751.1 scaffold691 98.99 True fake: scaffold gap size wrong estimation (local) 19345466 19346079 5264 4651 CM091751.1 scaffold691 99.35 True indel: indel (<= 5bp) 19344912 19345464 5817 5265 CM091751.1 scaffold691 99.1 True indel: indel (<= 5bp) 19344148 19344715 6584 6017 CM091751.1 scaffold691 98.42 True fake: scaffold gap size wrong estimation (local) 19342994 19343582 8799 8211 CM091751.1 scaffold691 98.98 True indel: indel (<= 5bp) 19342378 19342993 9416 8801 CM091751.1 scaffold691 99.19 True local misassembly 19341741 19342277 13511 12975 CM091751.1 scaffold691 99.63 True indel: indel (<= 5bp) 19341157 19341740 14096 13513 CM091751.1 scaffold691 98.29 True local misassembly 19337364 19340530 17901 14735 CM091751.1 scaffold691 99.62 True indel: indel (> 5bp) 19336325 19337086 18948 18187 CM091751.1 scaffold691 97.24 True local misassembly 19332366 19335197 22271 19440 CM091751.1 scaffold691 99.47 True local misassembly 19330770 19331572 23867 23065 CM091751.1 scaffold691 99.13 True local misassembly 19317536 19329146 37106 25564 CM091751.1 scaffold691 98.0 True fake: scaffold gap size wrong estimation (local) 19310904 19313872 40796 37826 CM091751.1 scaffold691 99.23 True local misassembly 19296363 19310452 55294 41104 CM091751.1 scaffold691 98.16 True local misassembly 19294412 19296303 57719 55824 CM091751.1 scaffold691 99.33 True relocation, inconsistency = 10071 19243990 19284340 98053 57720 CM091751.1 scaffold691 99.18 True indel: indel (> 5bp) 19241377 19243927 100691 98188 CM091751.1 scaffold691 97.45 True indel: indel (<= 5bp) 19240732 19241314 101339 100757 CM091751.1 scaffold691 98.8 True indel: indel (<= 5bp) 19239803 19240731 102269 101341 CM091751.1 scaffold691 99.68 True local misassembly 19238176 19239129 103897 102944 CM091751.1 scaffold691 99.48 True local misassembly 19234551 19235281 107392 106662 CM091751.1 scaffold691 99.86 True local misassembly 19233236 19234029 108707 107914 CM091751.1 scaffold691 97.86 True local misassembly 19229000 19231240 110948 108708 CM091751.1 scaffold691 99.82 True indel: indel (<= 5bp) 19228121 19228833 111825 111113 CM091751.1 scaffold691 99.16 True local misassembly 19226812 19228093 113910 112629 CM091751.1 scaffold691 99.22 True indel: indel (> 5bp) 19225619 19226358 115081 114342 CM091751.1 scaffold691 99.05 True local misassembly 19223032 19224832 117799 115999 CM091751.1 scaffold691 99.67 True local misassembly 19220961 19221817 119878 119022 CM091751.1 scaffold691 99.77 True indel: indel (<= 5bp) 19220084 19220960 120758 119882 CM091751.1 scaffold691 98.29 True local misassembly 19216848 19220083 124138 120903 CM091751.1 scaffold691 99.01 True indel: indel (<= 5bp) 19215949 19216845 125035 124139 CM091751.1 scaffold691 99.55 True fake: scaffold gap size wrong estimation (local) 19213894 19215415 127911 126390 CM091751.1 scaffold691 98.69 True indel: indel (<= 5bp) 19213275 19213890 128527 127912 CM091751.1 scaffold691 98.86 True indel: indel (<= 5bp) 19212168 19213273 129633 128528 CM091751.1 scaffold691 99.19 True indel: indel (> 5bp) 19211646 19212167 130165 129644 CM091751.1 scaffold691 99.23 True indel: stretch of mismatches 19210654 19211462 131157 130349 CM091751.1 scaffold691 99.01 True local misassembly 19207841 19210013 133968 131796 CM091751.1 scaffold691 99.72 True indel: indel (<= 5bp) 19206788 19207619 135025 134194 CM091751.1 scaffold691 99.88 True local misassembly 19205665 19206713 136877 135829 CM091751.1 scaffold691 99.43 True indel: indel (> 5bp) 19204967 19205528 137566 137005 CM091751.1 scaffold691 99.82 True local misassembly 19203507 19204032 139026 138501 CM091751.1 scaffold691 98.29 True CONTIG scaffold691 139030 misassembled 5611741 5635058 1 25035 CM091765.1 scaffold693 99.5 True fake: scaffold gap size wrong estimation (local) 5635276 5737415 25317 130437 CM091765.1 scaffold693 99.18 True indel: indel (> 5bp) 5737442 5840276 130509 235756 CM091765.1 scaffold693 99.38 True fake: scaffold gap size wrong estimation (local) 5840502 5909873 236432 306625 CM091765.1 scaffold693 98.7 True CONTIG scaffold693 307416 correct 8438234 8485630 1 47447 CM091760.1 scaffold701 99.54 True fake: scaffold gap size wrong estimation (local) 8485488 8497924 48134 60572 CM091760.1 scaffold701 99.39 True local misassembly 8496595 8845867 60573 413436 CM091760.1 scaffold701 98.74 True indel: indel (> 5bp) 8845963 8901500 413605 469027 CM091760.1 scaffold701 99.05 True indel: stretch of mismatches 8901501 8979585 469028 547050 CM091760.1 scaffold701 99.17 True indel: indel (> 5bp) 8979727 9118592 547200 687450 CM091760.1 scaffold701 99.05 True CONTIG scaffold701 687450 correct CONTIG scaffold703 342 unaligned 14926511 14927771 1 1261 CM091754.1 scaffold685 100.0 True indel: indel (<= 5bp) 14927773 14928698 1262 2187 CM091754.1 scaffold685 100.0 True indel: indel (> 5bp) 14928797 14929498 2311 3012 CM091754.1 scaffold685 100.0 True fake: scaffold gap size wrong estimation (local) 14929778 14930666 3754 4642 CM091754.1 scaffold685 99.89 True indel: indel (<= 5bp) 14930667 14931521 4644 5498 CM091754.1 scaffold685 100.0 True indel: indel (> 5bp) 14931764 14932518 5735 6489 CM091754.1 scaffold685 100.0 True fake: scaffold gap size wrong estimation (local) 14934180 14935689 8696 10214 CM091754.1 scaffold685 99.67 True fake: scaffold gap size wrong estimation (local) 14936406 14937155 11648 12437 CM091754.1 scaffold685 99.87 True fake: scaffold gap size wrong estimation (local) 14938079 15023833 13381 99958 CM091754.1 scaffold685 99.33 True fake: scaffold gap size wrong estimation (local) 15024012 15064768 100544 142163 CM091754.1 scaffold685 97.55 True fake: not a misassembly (possible transposable element) 5124866 5125570 142862 142164 CM091758.1 scaffold685 98.93 True fake: not a misassembly (possible transposable element) 15064891 15065791 142863 143763 CM091754.1 scaffold685 100.0 True fake: scaffold gap size wrong estimation (local) 15066353 15087218 145024 167179 CM091754.1 scaffold685 99.41 True fake: scaffold gap size wrong estimation (local) 15087388 15088142 168203 168957 CM091754.1 scaffold685 100.0 True CONTIG scaffold685 169387 correct CONTIG scaffold705 417 unaligned CONTIG scaffold692 7303 unaligned 16874407 16878122 1 3748 CM091756.1 scaffold704 99.01 True fake: scaffold gap size wrong estimation (local) 16881201 16882292 10065 11223 CM091756.1 scaffold704 99.15 True fake: scaffold gap size wrong estimation (local) 16883528 16884078 13146 13696 CM091756.1 scaffold704 100.0 True fake: scaffold gap size wrong estimation (local) 16884196 16884704 13852 14359 CM091756.1 scaffold704 99.22 True fake: scaffold gap size wrong estimation (local) 16887728 16888315 17436 18023 CM091756.1 scaffold704 99.32 True CONTIG scaffold704 18023 correct 11339408 11340637 5556 4328 CM091758.1 scaffold706 98.38 True fake: scaffold gap size wrong estimation (local) 11337556 11339094 9154 7613 CM091758.1 scaffold706 99.16 True CONTIG scaffold706 9154 correct 9051545 9052056 525 1 CM091767.1 scaffold708 96.95 True fake: scaffold gap size wrong estimation (local) 9050486 9051383 1568 671 CM091767.1 scaffold708 98.89 True local misassembly 9039126 9050036 13479 2513 CM091767.1 scaffold708 99.38 True CONTIG scaffold708 13998 correct CONTIG scaffold710 8300 unaligned 10425095 10465205 40247 1 CM091765.1 scaffold700 99.46 True indel: indel (> 5bp) 10398688 10424860 66856 40451 CM091765.1 scaffold700 99.02 True fake: scaffold gap size wrong estimation (local) 10390572 10398310 75262 67527 CM091765.1 scaffold700 99.92 True local misassembly 10387711 10391626 79204 75291 CM091765.1 scaffold700 99.9 True fake: scaffold gap size wrong estimation (local) 10386189 10386954 81059 80206 CM091765.1 scaffold700 98.71 True fake: scaffold gap size wrong estimation (local) 10368816 10384444 98026 82347 CM091765.1 scaffold700 99.58 True local misassembly 10358916 10368550 107801 98178 CM091765.1 scaffold700 99.8 True CONTIG scaffold700 107801 correct 9558879 9559514 2082 2717 CM091767.1 scaffold711 99.84 True unknown 9559594 9560347 2879 3632 CM091767.1 scaffold711 99.87 True unknown 9565238 9565841 3627 4231 CM091767.1 scaffold711 99.17 True unknown CONTIG scaffold711 4317 mis_unaligned CONTIG scaffold713 481 unaligned 5114452 5116095 1 1685 CM091768.1 scaffold712 97.03 True local misassembly 5116828 5140915 2401 26503 CM091768.1 scaffold712 99.56 True fake: scaffold gap size wrong estimation (local) 5142232 5144057 27788 29613 CM091768.1 scaffold712 99.34 True local misassembly 5144189 5146897 30112 32820 CM091768.1 scaffold712 97.45 True fake: scaffold gap size wrong estimation (local) 5146895 5147416 33320 33841 CM091768.1 scaffold712 100.0 True fake: scaffold gap size wrong estimation (local) 5147621 5164792 33959 51131 CM091768.1 scaffold712 99.95 True fake: scaffold gap size wrong estimation (local) 5165245 5178183 52681 65619 CM091768.1 scaffold712 99.99 True fake: scaffold gap size wrong estimation (local) 5178338 5179610 66008 67280 CM091768.1 scaffold712 100.0 True CONTIG scaffold712 67280 correct 11538766 11539418 997 343 CM091765.1 scaffold715 98.17 True CONTIG scaffold715 997 correct CONTIG scaffold714 4427 unaligned CONTIG scaffold709 5783 unaligned CONTIG scaffold716 345 unaligned CONTIG scaffold718 1098 unaligned CONTIG scaffold720 202 unaligned CONTIG scaffold707 16449 unaligned CONTIG scaffold722 433 unaligned CONTIG scaffold721 420 unaligned 2860228 2910012 49445 1 CM091768.1 scaffold724 96.55 True local misassembly 2858085 2859557 51597 50125 CM091768.1 scaffold724 99.25 True local misassembly 2856230 2857329 53461 52362 CM091768.1 scaffold724 98.73 True indel: indel (> 5bp) 2855546 2856059 54135 53622 CM091768.1 scaffold724 99.42 True local misassembly 2853989 2854539 55280 54730 CM091768.1 scaffold724 99.82 True local misassembly 2853281 2853857 55857 55281 CM091768.1 scaffold724 99.48 True local misassembly 2848814 2852901 59866 55948 CM091768.1 scaffold724 95.38 True CONTIG scaffold724 61744 correct CONTIG scaffold725 1015 unaligned CONTIG scaffold726 387 unaligned CONTIG scaffold723 854 unaligned CONTIG scaffold728 574 unaligned CONTIG scaffold729 350 unaligned 356033 388786 32704 1 CM091752.1 scaffold727 98.85 True indel: indel (> 5bp) 352328 355954 36390 32770 CM091752.1 scaffold727 98.9 True fake: scaffold gap size wrong estimation (local) 336705 352271 52081 36465 CM091752.1 scaffold727 98.66 True local misassembly 335118 335680 53905 53343 CM091752.1 scaffold727 99.47 True indel: indel (<= 5bp) 334243 335117 54781 53907 CM091752.1 scaffold727 99.31 True indel: indel (<= 5bp) 333630 334242 55395 54783 CM091752.1 scaffold727 99.35 True indel: indel (> 5bp) 332668 333216 56346 55798 CM091752.1 scaffold727 99.45 True indel: indel (<= 5bp) 332162 332666 56851 56347 CM091752.1 scaffold727 98.81 True local misassembly 330672 331286 58318 57704 CM091752.1 scaffold727 99.51 True indel: indel (> 5bp) 329442 330671 59561 58332 CM091752.1 scaffold727 99.59 True fake: scaffold gap size wrong estimation (local) 327796 328385 63025 62436 CM091752.1 scaffold727 98.31 True local misassembly 327132 327795 63778 63115 CM091752.1 scaffold727 99.25 True indel: indel (<= 5bp) 326150 327127 64756 63779 CM091752.1 scaffold727 99.69 True local misassembly 325419 326149 65885 65155 CM091752.1 scaffold727 99.18 True fake: scaffold gap size wrong estimation (local) 315050 323097 76289 68280 CM091752.1 scaffold727 97.97 True local misassembly 306378 314357 85288 77290 CM091752.1 scaffold727 98.27 True indel: indel (> 5bp) 304741 306295 86950 85395 CM091752.1 scaffold727 99.74 True local misassembly 274367 304468 118267 88286 CM091752.1 scaffold727 98.77 True fake: scaffold gap size wrong estimation (local) 262572 274066 130279 118740 CM091752.1 scaffold727 98.78 True indel: indel (> 5bp) 258547 262296 134345 130496 CM091752.1 scaffold727 96.91 True indel: indel (> 5bp) 253372 258274 139578 134670 CM091752.1 scaffold727 98.88 True local misassembly 253493 254380 140581 139693 CM091752.1 scaffold727 98.31 True CONTIG scaffold727 140581 correct CONTIG scaffold731 403 unaligned CONTIG scaffold730 441 unaligned 14702791 14706325 3621 1 CM091752.1 scaffold719 97.38 True local misassembly 14701582 14702498 4708 3792 CM091752.1 scaffold719 99.89 True local misassembly 14699603 14700209 5315 4709 CM091752.1 scaffold719 100.0 True CONTIG scaffold719 5315 correct CONTIG scaffold734 378 unaligned CONTIG scaffold735 384 unaligned 85925 87382 1482 1 CM091752.1 scaffold732 99.03 True fake: scaffold gap size wrong estimation (local) 74718 85050 14354 3705 CM091752.1 scaffold732 96.17 True indel: indel (> 5bp) 71051 74653 18038 14436 CM091752.1 scaffold732 99.97 True fake: scaffold gap size wrong estimation (local) 65578 70857 23622 18269 CM091752.1 scaffold732 98.52 True indel: indel (> 5bp) 62928 65455 26293 23766 CM091752.1 scaffold732 100.0 True CONTIG scaffold732 26293 correct CONTIG scaffold736 456 unaligned CONTIG scaffold733 4350 unaligned 1310497 1312112 1616 1 CM091755.1 scaffold738 99.88 True indel: indel (> 5bp) 1299726 1310365 12468 1754 CM091755.1 scaffold738 97.9 True fake: scaffold gap size wrong estimation (local) 1260752 1299582 52597 13227 CM091755.1 scaffold738 99.48 True indel: indel (> 5bp) 1233371 1260494 80175 52823 CM091755.1 scaffold738 98.97 True local misassembly 1199812 1233099 114148 80883 CM091755.1 scaffold738 99.72 True fake: scaffold gap size wrong estimation (local) 1184153 1199436 130025 114740 CM091755.1 scaffold738 99.91 True fake: not a misassembly (possible transposable element) 6535629 6536381 130779 130026 CM091759.1 scaffold738 99.53 True fake: not a misassembly (possible transposable element) 1176723 1184073 138169 130803 CM091755.1 scaffold738 99.76 True local misassembly 1138505 1174764 175052 138786 CM091755.1 scaffold738 99.9 True relocation, inconsistency = -35993 1138772 1139402 175053 175683 CM091755.1 scaffold738 100.0 True inversion 1119168 1138399 195050 175684 CM091755.1 scaffold738 99.56 True CONTIG scaffold738 195050 misassembled CONTIG scaffold739 616 unaligned 9250148 9251132 1 986 CM091767.1 scaffold741 99.09 True fake: scaffold gap size wrong estimation (local) 9252274 9266023 2560 16687 CM091767.1 scaffold741 97.09 True CONTIG scaffold741 16687 correct CONTIG scaffold740 822 unaligned CONTIG scaffold742 751 unaligned 1821216 1852930 1 32153 CM091753.1 scaffold689 98.23 True indel: indel (> 5bp) 1853095 1877500 32365 56797 CM091753.1 scaffold689 99.55 True fake: scaffold gap size wrong estimation (local) 1878231 1890461 57544 69793 CM091753.1 scaffold689 99.58 True local misassembly 1889652 1944626 69794 125566 CM091753.1 scaffold689 98.73 True fake: scaffold gap size wrong estimation (local) 1944864 2092749 126797 275017 CM091753.1 scaffold689 99.28 True local misassembly 2093293 2102399 275211 284317 CM091753.1 scaffold689 99.95 True CONTIG scaffold689 287691 correct CONTIG scaffold745 642 unaligned 3105933 3123220 17373 49 CM091752.1 scaffold743 99.5 True indel: indel (> 5bp) 3101348 3105885 22042 17466 CM091752.1 scaffold743 99.04 True local misassembly 3095960 3101151 27672 22454 CM091752.1 scaffold743 98.87 True indel: indel (> 5bp) 3090991 3095902 32634 27745 CM091752.1 scaffold743 98.15 True fake: scaffold gap size wrong estimation (local) 3087747 3092136 38197 33877 CM091752.1 scaffold743 97.75 True CONTIG scaffold743 38197 correct CONTIG scaffold747 372 unaligned CONTIG scaffold748 623 unaligned 3996850 4017465 1 20813 CM091752.1 scaffold744 98.76 True fake: scaffold gap size wrong estimation (local) 4018322 4019276 21887 22825 CM091752.1 scaffold744 98.22 True fake: scaffold gap size wrong estimation (local) 4020148 4024748 24384 28985 CM091752.1 scaffold744 99.31 True CONTIG scaffold744 28985 correct 2797120 2798150 532 1562 CM091755.1 scaffold750 100.0 True CONTIG scaffold750 2054 correct CONTIG scaffold746 761 unaligned 5434508 5435025 518 1 CM091768.1 scaffold752 99.81 True indel: indel (> 5bp) 5433801 5434371 1199 629 CM091768.1 scaffold752 99.3 True fake: scaffold gap size wrong estimation (local) 5404291 5433543 31162 2319 CM091768.1 scaffold752 98.4 True CONTIG scaffold752 31162 correct CONTIG scaffold753 362 unaligned CONTIG scaffold751 943 unaligned CONTIG scaffold754 431 unaligned 2808098 2827538 22392 2442 CM091754.1 scaffold749 98.85 True indel: indel (> 5bp) 2758187 2807904 73152 22640 CM091754.1 scaffold749 96.17 True local misassembly 2756288 2757697 74816 73398 CM091754.1 scaffold749 98.31 True indel: indel (<= 5bp) 2755073 2756133 76035 74975 CM091754.1 scaffold749 99.62 True local misassembly 2753578 2754468 77574 76684 CM091754.1 scaffold749 98.09 True indel: indel (<= 5bp) 2752327 2753575 78823 77575 CM091754.1 scaffold749 99.44 True local misassembly 2750170 2751270 80599 79499 CM091754.1 scaffold749 99.27 True local misassembly 2748320 2749052 82593 81861 CM091754.1 scaffold749 99.45 True indel: indel (<= 5bp) 2747645 2748317 83266 82594 CM091754.1 scaffold749 98.51 True local misassembly 2746285 2746788 84631 84128 CM091754.1 scaffold749 98.21 True indel: indel (<= 5bp) 2745092 2746080 85825 84837 CM091754.1 scaffold749 99.39 True local misassembly 2743162 2744140 87228 86250 CM091754.1 scaffold749 99.49 True local misassembly 2736260 2741187 93598 88583 CM091754.1 scaffold749 97.15 True fake: scaffold gap size wrong estimation (local) 2731949 2734173 97615 95364 CM091754.1 scaffold749 97.87 True local misassembly 2730748 2731485 98879 98142 CM091754.1 scaffold749 99.19 True indel: indel (> 5bp) 2727793 2730298 101871 99366 CM091754.1 scaffold749 99.6 True local misassembly 2720126 2727253 110135 102992 CM091754.1 scaffold749 98.76 True local misassembly 2720149 2720668 110984 110465 CM091754.1 scaffold749 98.65 True local misassembly 2718541 2719102 112595 112034 CM091754.1 scaffold749 99.29 True indel: indel (<= 5bp) 2716870 2718540 114267 112597 CM091754.1 scaffold749 98.86 True local misassembly 2714481 2716013 116101 114569 CM091754.1 scaffold749 99.54 True local misassembly 2712952 2713763 117974 117163 CM091754.1 scaffold749 98.77 True indel: indel (<= 5bp) 2711795 2712717 119128 118206 CM091754.1 scaffold749 99.67 True indel: indel (<= 5bp) 2710872 2711428 120048 119492 CM091754.1 scaffold749 98.92 True fake: scaffold gap size wrong estimation (local) 2709293 2710052 121980 121221 CM091754.1 scaffold749 99.74 True local misassembly 2703388 2707742 126975 122717 CM091754.1 scaffold749 96.54 True local misassembly 2700779 2702642 129487 127625 CM091754.1 scaffold749 98.02 True indel: indel (> 5bp) 2699908 2700634 130381 129662 CM091754.1 scaffold749 98.21 True indel: indel (> 5bp) 2698784 2699732 131513 130565 CM091754.1 scaffold749 99.47 True local misassembly 2696371 2697373 133835 132833 CM091754.1 scaffold749 99.0 True indel: indel (> 5bp) 2695448 2696187 134793 134054 CM091754.1 scaffold749 98.92 True indel: indel (<= 5bp) 2694826 2695447 135416 134795 CM091754.1 scaffold749 99.2 True indel: indel (<= 5bp) 2694231 2694825 136012 135418 CM091754.1 scaffold749 99.5 True local misassembly 2692240 2692775 138011 137476 CM091754.1 scaffold749 99.44 True local misassembly 2689834 2690737 140339 139436 CM091754.1 scaffold749 99.34 True indel: indel (<= 5bp) 2688225 2689833 141949 140341 CM091754.1 scaffold749 99.38 True local misassembly 2686002 2687395 144878 143485 CM091754.1 scaffold749 99.35 True CONTIG scaffold749 144878 correct 4807911 4844724 37507 1 CM091760.1 scaffold702 97.57 True indel: indel (> 5bp) 4777680 4807586 67680 37857 CM091760.1 scaffold702 99.3 True local misassembly 4691545 4777643 156813 68360 CM091760.1 scaffold702 99.3 True fake: scaffold gap size wrong estimation (local) 4587671 4690713 263088 159535 CM091760.1 scaffold702 98.97 True local misassembly 4587671 4588368 263786 263089 CM091760.1 scaffold702 99.22 True local misassembly 4587671 4588994 265182 263857 CM091760.1 scaffold702 98.72 True local misassembly 4463294 4588994 392974 265253 CM091760.1 scaffold702 98.54 True indel: indel (<= 5bp) 4421680 4463217 434779 393054 CM091760.1 scaffold702 99.14 True fake: scaffold gap size wrong estimation (local) 4418522 4420603 437828 435750 CM091760.1 scaffold702 99.66 True CONTIG scaffold702 437828 correct CONTIG scaffold758 503 unaligned 6317614 6319985 38 2452 CM091763.1 scaffold757 97.68 True local misassembly 6321009 6420116 4133 105335 CM091763.1 scaffold757 99.55 True local misassembly 6418685 6421266 105336 107916 CM091763.1 scaffold757 99.61 True CONTIG scaffold757 107916 correct 4480342 4482998 1 2657 CM091768.1 scaffold760 100.0 True CONTIG scaffold760 2657 correct CONTIG scaffold761 337 unaligned 3358642 3359183 542 1 CM091752.1 scaffold759 100.0 True local misassembly 3357848 3358602 1529 775 CM091752.1 scaffold759 99.74 True CONTIG scaffold759 1529 correct CONTIG scaffold763 940 unaligned CONTIG scaffold756 592 unaligned CONTIG scaffold755 4843 unaligned 7206990 7207825 1 836 CM091758.1 scaffold766 99.52 True relocation, scaffold gap is present, inconsistency = 12896 7222236 7223857 2351 3969 CM091758.1 scaffold766 99.01 True CONTIG scaffold766 4053 misassembled 642954 649146 7331 1147 CM091760.1 scaffold699 99.76 True fake: scaffold gap size wrong estimation (local) 539743 642693 111797 8100 CM091760.1 scaffold699 99.48 True indel: indel (> 5bp) 476878 539494 175819 112058 CM091760.1 scaffold699 99.11 True fake: scaffold gap size wrong estimation (local) 474620 476674 178237 176183 CM091760.1 scaffold699 100.0 True fake: not a misassembly (possible transposable element) 473811 474581 178250 179020 CM091760.1 scaffold699 99.88 True fake: not a misassembly (possible transposable element) 419161 474859 234723 179021 CM091760.1 scaffold699 99.89 True indel: indel (> 5bp) 388581 419014 265303 234880 CM091760.1 scaffold699 99.9 True fake: scaffold gap size wrong estimation (local) 374120 388103 280966 266438 CM091760.1 scaffold699 99.62 True fake: scaffold gap size wrong estimation (local) 335025 373185 321425 281989 CM091760.1 scaffold699 99.74 True fake: scaffold gap size wrong estimation (local) 285333 334934 372740 322319 CM091760.1 scaffold699 97.51 True indel: indel (<= 5bp) 221830 285271 436291 372806 CM091760.1 scaffold699 99.86 True fake: scaffold gap size wrong estimation (local) 204704 221724 454578 437477 CM091760.1 scaffold699 99.42 True local misassembly 173555 203522 486207 456067 CM091760.1 scaffold699 99.2 True fake: scaffold gap size wrong estimation (local) 153936 173427 506226 486347 CM091760.1 scaffold699 99.62 True fake: scaffold gap size wrong estimation (local) 107778 153701 553692 506670 CM091760.1 scaffold699 97.68 True indel: indel (> 5bp) 105092 107372 556367 554087 CM091760.1 scaffold699 99.91 True indel: indel (> 5bp) 104083 105091 557418 556410 CM091760.1 scaffold699 100.0 True local misassembly 96260 99778 560937 557419 CM091760.1 scaffold699 99.97 True CONTIG scaffold699 560937 correct 4358212 4360133 1922 1 CM091768.1 scaffold768 99.69 True CONTIG scaffold768 1922 correct 10492650 10494407 1 1772 CM091765.1 scaffold762 97.65 True fake: scaffold gap size wrong estimation (local) 10496125 10600096 3161 107806 CM091765.1 scaffold762 99.56 True indel: indel (<= 5bp) 10600308 10601722 108020 109442 CM091765.1 scaffold762 99.3 True fake: scaffold gap size wrong estimation (local) 10603327 10604223 110868 111764 CM091765.1 scaffold762 100.0 True indel: indel (> 5bp) 10604297 10699177 111892 207000 CM091765.1 scaffold762 99.67 True CONTIG scaffold762 208902 correct CONTIG scaffold770 437 unaligned 16209235 16223575 1 14669 CM091757.1 scaffold769 97.68 True indel: indel (> 5bp) 16223641 16224473 14742 15574 CM091757.1 scaffold769 100.0 True CONTIG scaffold769 15574 correct 13774925 13775911 988 1 CM091758.1 scaffold767 99.6 True fake: scaffold gap size wrong estimation (local) 13768253 13773835 8455 2597 CM091758.1 scaffold767 95.1 True local misassembly 13766365 13767171 10465 9659 CM091758.1 scaffold767 96.03 True local misassembly 13766361 13766900 11005 10466 CM091758.1 scaffold767 96.49 True local misassembly 13765346 13766123 12141 11364 CM091758.1 scaffold767 98.97 True fake: not a misassembly (possible transposable element) 3972362 3974001 13876 12237 CM091764.1 scaffold767 99.45 True fake: not a misassembly (possible transposable element) 13763793 13764589 14750 13954 CM091758.1 scaffold767 99.75 True CONTIG scaffold767 14750 correct 7223429 7230552 1 7213 CM091758.1 scaffold717 97.76 True local misassembly 7232327 7253674 7539 28933 CM091758.1 scaffold717 99.08 True local misassembly 7253741 7314450 29288 90480 CM091758.1 scaffold717 98.7 True indel: indel (<= 5bp) 7314464 7334918 90497 110986 CM091758.1 scaffold717 99.64 True fake: scaffold gap size wrong estimation (local) 7334921 7487225 111902 264187 CM091758.1 scaffold717 99.48 True indel: indel (> 5bp) 7487360 7489987 264259 266921 CM091758.1 scaffold717 98.31 True fake: scaffold gap size wrong estimation (local) 7490272 7491026 267265 268019 CM091758.1 scaffold717 98.94 True indel: indel (> 5bp) 7491304 7492086 268308 269090 CM091758.1 scaffold717 99.36 True local misassembly 7498392 7499166 269091 269865 CM091758.1 scaffold717 99.61 True indel: indel (<= 5bp) 7499167 7500489 269867 271189 CM091758.1 scaffold717 100.0 True indel: indel (<= 5bp) 7500491 7501430 271190 272129 CM091758.1 scaffold717 100.0 True indel: indel (<= 5bp) 7501432 7502532 272130 273230 CM091758.1 scaffold717 99.82 True indel: indel (<= 5bp) 7502534 7508280 273231 278977 CM091758.1 scaffold717 99.81 True indel: indel (<= 5bp) 7508281 7510945 278979 281643 CM091758.1 scaffold717 99.74 True indel: indel (<= 5bp) 7510956 7512142 281655 282841 CM091758.1 scaffold717 99.92 True indel: indel (> 5bp) 7512143 7514948 282850 285655 CM091758.1 scaffold717 99.75 True indel: indel (<= 5bp) 7514949 7516446 285657 287154 CM091758.1 scaffold717 99.8 True indel: indel (<= 5bp) 7516448 7518082 287155 288789 CM091758.1 scaffold717 99.63 True indel: indel (> 5bp) 7518311 7519770 288997 290456 CM091758.1 scaffold717 99.86 True indel: indel (<= 5bp) 7519772 7526070 290457 296755 CM091758.1 scaffold717 99.97 True indel: indel (<= 5bp) 7526071 7528852 296757 299538 CM091758.1 scaffold717 99.89 True indel: indel (<= 5bp) 7528853 7529862 299540 300549 CM091758.1 scaffold717 99.9 True indel: indel (<= 5bp) 7529973 7531568 300665 302260 CM091758.1 scaffold717 99.81 True indel: indel (<= 5bp) 7531569 7532510 302262 303203 CM091758.1 scaffold717 100.0 True indel: indel (<= 5bp) 7532514 7534026 303204 304716 CM091758.1 scaffold717 99.87 True indel: indel (<= 5bp) 7534064 7534905 304753 305594 CM091758.1 scaffold717 99.52 True indel: indel (<= 5bp) 7534908 7536652 305595 307339 CM091758.1 scaffold717 99.89 True indel: indel (<= 5bp) 7536974 7541477 307658 312161 CM091758.1 scaffold717 99.89 True indel: indel (<= 5bp) 7541479 7544083 312162 314766 CM091758.1 scaffold717 99.73 True indel: indel (<= 5bp) 7544187 7545352 314872 316037 CM091758.1 scaffold717 99.83 True indel: stretch of mismatches 7545721 7547702 316406 318387 CM091758.1 scaffold717 99.6 True indel: indel (<= 5bp) 7548042 7549421 318728 320107 CM091758.1 scaffold717 99.64 True indel: indel (> 5bp) 7549523 7611174 320216 382576 CM091758.1 scaffold717 96.09 True indel: indel (<= 5bp) 7611262 7629152 382659 400544 CM091758.1 scaffold717 98.95 True local misassembly 7629854 7772111 401458 544659 CM091758.1 scaffold717 99.34 True local misassembly 7772188 7793324 544851 565993 CM091758.1 scaffold717 99.43 True indel: indel (<= 5bp) 7793369 7820424 566033 593090 CM091758.1 scaffold717 99.27 True fake: scaffold gap size wrong estimation (local) 7820599 7934056 593770 709993 CM091758.1 scaffold717 99.05 True indel: indel (> 5bp) 7934158 8457462 710042 1236383 CM091758.1 scaffold717 98.52 True fake: scaffold gap size wrong estimation (local) 8457586 8493952 1237528 1274890 CM091758.1 scaffold717 98.12 True fake: scaffold gap size wrong estimation (local) 8494037 8510660 1275440 1292061 CM091758.1 scaffold717 98.94 True local misassembly 8509577 8616523 1292063 1399453 CM091758.1 scaffold717 99.1 True CONTIG scaffold717 1399493 correct 5639943 5661626 21712 1 CM091768.1 scaffold772 99.81 True fake: scaffold gap size wrong estimation (local) 5637412 5639986 24829 22257 CM091768.1 scaffold772 99.77 True CONTIG scaffold772 24829 correct 9268727 9269558 832 1 CM091767.1 scaffold775 100.0 True CONTIG scaffold775 832 correct 15949338 15962343 13162 1 CM091757.1 scaffold774 98.62 True indel: indel (> 5bp) 15934512 15949307 28072 13229 CM091757.1 scaffold774 99.43 True CONTIG scaffold774 28072 correct 5623543 5625099 1557 1 CM091768.1 scaffold771 99.87 True fake: scaffold gap size wrong estimation (local) 5582992 5622904 42787 2880 CM091768.1 scaffold771 99.96 True local misassembly 5567645 5579813 54957 42788 CM091768.1 scaffold771 99.98 True relocation, scaffold gap is present, inconsistency = 67154 5457932 5499541 97625 55907 CM091768.1 scaffold771 99.71 True indel: indel (> 5bp) 5456709 5457842 98866 97733 CM091768.1 scaffold771 100.0 True CONTIG scaffold771 98866 misassembled CONTIG scaffold778 460 unaligned 15387804 15388967 20 1188 CM091752.1 scaffold779 95.68 True CONTIG scaffold779 1188 correct 18449524 18450049 31093 30574 CM091751.1 scaffold776 96.96 True unknown 10137816 10139754 38800 40739 CM091765.1 scaffold776 99.9 True unknown 10115581 10125852 50645 40371 CM091765.1 scaffold776 99.85 True unknown 10072119 10095809 57636 81357 CM091765.1 scaffold776 99.68 True unknown CONTIG scaffold776 81357 mis_unaligned CONTIG scaffold780 368 unaligned CONTIG scaffold782 780 unaligned CONTIG scaffold781 401 unaligned 13696395 13762374 66089 1 CM091758.1 scaffold737 99.67 True indel: indel (> 5bp) 13642548 13696394 120808 66132 CM091758.1 scaffold737 98.34 True fake: scaffold gap size wrong estimation (local) 13585708 13641941 178455 121476 CM091758.1 scaffold737 99.04 True local misassembly 13573226 13586260 191487 178456 CM091758.1 scaffold737 99.88 True fake: scaffold gap size wrong estimation (local) 13553842 13570729 210336 193441 CM091758.1 scaffold737 99.85 True indel: indel (<= 5bp) 13522815 13553750 241438 210425 CM091758.1 scaffold737 99.62 True CONTIG scaffold737 243854 correct CONTIG scaffold785 370 unaligned 13370065 13371533 1 1490 CM091758.1 scaffold777 97.79 True fake: not a misassembly (possible transposable element) 10633157 10637242 3607 7734 CM091752.1 scaffold777 96.97 True fake: not a misassembly (possible transposable element) 13376533 13377189 8658 9314 CM091758.1 scaffold777 100.0 True CONTIG scaffold777 9314 correct CONTIG scaffold783 473 unaligned CONTIG scaffold787 699 unaligned CONTIG scaffold789 429 unaligned CONTIG scaffold790 495 unaligned CONTIG scaffold791 329 unaligned CONTIG scaffold792 316 unaligned 1832665 1844455 1 12118 CM091764.1 scaffold793 98.65 True fake: scaffold gap size wrong estimation (local) 1844092 1845121 12565 13589 CM091764.1 scaffold793 97.09 True fake: scaffold gap size wrong estimation (local) 1846487 1861236 16893 31711 CM091764.1 scaffold793 99.58 True CONTIG scaffold793 31711 correct 16306035 16306550 516 1 CM091752.1 scaffold794 99.03 True CONTIG scaffold794 516 correct 16461865 16463038 1637 464 CM091752.1 scaffold795 99.15 True CONTIG scaffold795 2976 correct 17108714 17109434 724 1444 CM091752.1 scaffold796 99.03 True CONTIG scaffold796 1444 correct 2104847 2135538 25 31680 CM091751.1 scaffold784 96.05 True indel: indel (> 5bp) 2135882 2144832 31989 41265 CM091751.1 scaffold784 98.3 True indel: indel (<= 5bp) 2145042 2262900 41478 160838 CM091751.1 scaffold784 97.55 True indel: indel (> 5bp) 2262988 2292466 160940 190626 CM091751.1 scaffold784 98.61 True fake: scaffold gap size wrong estimation (local) 2292921 2295964 191501 194549 CM091751.1 scaffold784 98.3 True local misassembly 2296849 2402596 195669 303314 CM091751.1 scaffold784 96.37 True CONTIG scaffold784 303579 correct CONTIG scaffold798 418 unaligned CONTIG scaffold799 469 unaligned CONTIG scaffold800 897 unaligned 9253835 9254970 1 1137 CM091763.1 scaffold698 99.56 True indel: indel (> 5bp) 9255044 9297954 1221 45502 CM091763.1 scaffold698 99.2 True indel: indel (> 5bp) 9298098 9362231 45669 110777 CM091763.1 scaffold698 97.86 True indel: indel (> 5bp) 9362340 9478977 110922 228539 CM091763.1 scaffold698 98.97 True indel: indel (> 5bp) 9479010 9548463 228566 298841 CM091763.1 scaffold698 97.27 True indel: indel (<= 5bp) 9548514 9569428 298895 319800 CM091763.1 scaffold698 99.42 True fake: scaffold gap size wrong estimation (local) 9569236 9592997 320466 344250 CM091763.1 scaffold698 99.3 True local misassembly 9592123 9768447 344275 522240 CM091763.1 scaffold698 98.09 True local misassembly 9768913 9769732 523176 523995 CM091763.1 scaffold698 99.63 True indel: indel (> 5bp) 9769853 9772062 524135 526344 CM091763.1 scaffold698 99.28 True local misassembly 9772636 9773558 526904 527826 CM091763.1 scaffold698 99.67 True local misassembly 9774981 9775711 529093 529823 CM091763.1 scaffold698 98.91 True indel: indel (<= 5bp) 9775715 9776928 529824 531037 CM091763.1 scaffold698 99.26 True indel: indel (<= 5bp) 9776929 9778070 531039 532180 CM091763.1 scaffold698 99.56 True indel: indel (<= 5bp) 9778242 9778752 532354 532864 CM091763.1 scaffold698 98.63 True local misassembly 9781264 9784667 536468 539872 CM091763.1 scaffold698 99.06 True local misassembly 9785815 9807279 540850 562129 CM091763.1 scaffold698 98.15 True indel: indel (> 5bp) 9807357 9815801 562240 570703 CM091763.1 scaffold698 98.96 True local misassembly 9814800 9815958 570730 571888 CM091763.1 scaffold698 98.79 True local misassembly 9817779 9819304 573735 575260 CM091763.1 scaffold698 99.67 True local misassembly 9821914 9824475 577217 579778 CM091763.1 scaffold698 99.3 True indel: indel (<= 5bp) 9824477 9825951 579779 581253 CM091763.1 scaffold698 99.19 True indel: indel (<= 5bp) 9825952 9827186 581255 582489 CM091763.1 scaffold698 99.51 True local misassembly 9827755 9828876 583062 584183 CM091763.1 scaffold698 99.82 True indel: indel (<= 5bp) 9828877 9829547 584185 584855 CM091763.1 scaffold698 99.55 True local misassembly 9831113 9834966 586210 590046 CM091763.1 scaffold698 99.07 True local misassembly 9836057 9844873 590606 599568 CM091763.1 scaffold698 97.18 True indel: indel (> 5bp) 9844934 9846973 599636 601671 CM091763.1 scaffold698 99.22 True fake: scaffold gap size wrong estimation (local) 9848843 9850747 602907 604811 CM091763.1 scaffold698 99.21 True indel: stretch of mismatches 9851017 9852398 605081 606462 CM091763.1 scaffold698 99.78 True local misassembly 9852823 9853861 606528 607566 CM091763.1 scaffold698 99.33 True indel: indel (> 5bp) 9854011 9854898 607708 608595 CM091763.1 scaffold698 99.66 True indel: indel (<= 5bp) 9854899 9855664 608599 609364 CM091763.1 scaffold698 99.35 True local misassembly 9856556 9857268 610257 610969 CM091763.1 scaffold698 99.02 True fake: scaffold gap size wrong estimation (local) 9857969 9867225 612194 621466 CM091763.1 scaffold698 98.71 True local misassembly 9866326 9884569 621467 640162 CM091763.1 scaffold698 97.56 True indel: indel (<= 5bp) 9884676 9907294 640273 662280 CM091763.1 scaffold698 96.3 True local misassembly 9907772 9917616 662874 672794 CM091763.1 scaffold698 98.56 True indel: indel (> 5bp) 9917658 9947741 672824 703624 CM091763.1 scaffold698 98.86 True fake: scaffold gap size wrong estimation (local) 9948318 9968692 705225 726001 CM091763.1 scaffold698 97.48 True fake: scaffold gap size wrong estimation (local) 9969026 10036651 727581 795236 CM091763.1 scaffold698 99.47 True indel: indel (> 5bp) 10036723 10071453 795261 830381 CM091763.1 scaffold698 98.32 True indel: indel (> 5bp) 10071642 10235823 830541 991766 CM091763.1 scaffold698 95.45 True fake: scaffold gap size wrong estimation (local) 10235923 10253296 992608 1010594 CM091763.1 scaffold698 99.17 True fake: scaffold gap size wrong estimation (local) 10253510 10278492 1011227 1036440 CM091763.1 scaffold698 98.23 True fake: scaffold gap size wrong estimation (local) 10278894 10280313 1037696 1039115 CM091763.1 scaffold698 99.79 True fake: scaffold gap size wrong estimation (local) 10280541 10316876 1039976 1076469 CM091763.1 scaffold698 99.01 True indel: indel (> 5bp) 10316938 10399260 1076540 1159444 CM091763.1 scaffold698 99.18 True CONTIG scaffold698 1159512 correct 16746089 16757315 11232 1 CM091756.1 scaffold802 99.91 True CONTIG scaffold802 11232 correct CONTIG scaffold803 1225 unaligned 50320 54252 666 4621 CM091755.1 scaffold804 99.19 True CONTIG scaffold804 4621 correct CONTIG scaffold801 3608 unaligned CONTIG scaffold805 613 unaligned CONTIG scaffold807 599 unaligned CONTIG scaffold808 402 unaligned 5755589 5875464 58 120200 CM091764.1 scaffold809 99.15 True CONTIG scaffold809 120242 correct CONTIG scaffold810 730 unaligned 15385370 15426063 41753 1 CM091757.1 scaffold786 99.09 True fake: scaffold gap size wrong estimation (local) 15344083 15385268 83912 42397 CM091757.1 scaffold786 99.99 True fake: scaffold gap size wrong estimation (local) 15237951 15344358 192654 84175 CM091757.1 scaffold786 99.06 True local misassembly 15154221 15238487 277514 192655 CM091757.1 scaffold786 99.2 True CONTIG scaffold786 277514 correct 3661006 3662652 1 1652 CM091768.1 scaffold812 98.12 True CONTIG scaffold812 4303 correct_unaligned 4845059 4845854 1 821 CM091760.1 scaffold797 96.23 True fake: scaffold gap size wrong estimation (local) 4846046 4856494 1822 12277 CM091760.1 scaffold797 99.5 True local misassembly 4856855 5031365 13077 190388 CM091760.1 scaffold797 98.87 True fake: scaffold gap size wrong estimation (local) 5031577 5119196 191383 281580 CM091760.1 scaffold797 99.1 True indel: indel (<= 5bp) 5119238 5154084 281627 316462 CM091760.1 scaffold797 99.25 True local misassembly 5154130 5240810 317390 404274 CM091760.1 scaffold797 99.24 True CONTIG scaffold797 404274 correct 4160995 4161603 1 611 CM091752.1 scaffold813 96.89 True CONTIG scaffold813 777 correct 11014565 11015681 1 1117 CM091765.1 scaffold815 100.0 True CONTIG scaffold815 1117 correct 2104169 2122355 78 18327 CM091764.1 scaffold816 99.66 True CONTIG scaffold816 18327 correct 6208112 6208907 1836 1042 CM091768.1 scaffold817 99.87 True CONTIG scaffold817 1836 correct_unaligned CONTIG scaffold818 340 unaligned CONTIG scaffold773 2189 unaligned CONTIG scaffold820 737 unaligned CONTIG scaffold821 518 unaligned CONTIG scaffold822 417 unaligned CONTIG scaffold823 1073 unaligned 15577317 15579910 2594 1 CM091757.1 scaffold824 100.0 True local misassembly 15576149 15576960 3406 2595 CM091757.1 scaffold824 99.88 True fake: scaffold gap size wrong estimation (local) 15575027 15575993 4529 3530 CM091757.1 scaffold824 95.23 True CONTIG scaffold824 4529 correct CONTIG scaffold811 376 unaligned 3979437 3995643 16936 1 CM091752.1 scaffold826 96.69 True CONTIG scaffold826 16936 correct 2591384 2592171 378 1202 CM091754.1 scaffold819 99.59 True fake: scaffold gap size wrong estimation (local) 2593310 2598929 2268 7874 CM091754.1 scaffold819 98.3 True fake: scaffold gap size wrong estimation (local) 2599301 2648935 8266 58593 CM091754.1 scaffold819 97.57 True indel: indel (<= 5bp) 2648980 2661324 58639 70668 CM091754.1 scaffold819 95.08 True indel: indel (> 5bp) 2661415 2676629 70791 86119 CM091754.1 scaffold819 98.11 True local misassembly 2676675 2680666 86297 90280 CM091754.1 scaffold819 98.95 True local misassembly 2679873 2685558 90291 95952 CM091754.1 scaffold819 98.26 True CONTIG scaffold819 95952 correct CONTIG scaffold828 439 unaligned 215993 221300 1 5341 CM091752.1 scaffold830 98.16 True CONTIG scaffold830 5341 correct CONTIG scaffold829 433 unaligned 11520841 11521606 776 11 CM091765.1 scaffold825 100.0 True indel: indel (> 5bp) 11514745 11520772 6906 851 CM091765.1 scaffold825 99.34 True fake: scaffold gap size wrong estimation (local) 11506659 11513319 16092 9214 CM091765.1 scaffold825 96.09 True fake: scaffold gap size wrong estimation (local) 11502908 11506080 19895 16723 CM091765.1 scaffold825 99.94 True fake: scaffold gap size wrong estimation (local) 11493627 11502568 29244 20273 CM091765.1 scaffold825 99.31 True fake: scaffold gap size wrong estimation (local) 11484223 11493184 38495 29519 CM091765.1 scaffold825 99.77 True CONTIG scaffold825 38495 correct 897531 923000 1 25599 CM091764.1 scaffold831 99.41 True CONTIG scaffold831 25599 correct CONTIG scaffold832 639 unaligned 2012780 2015211 1 2451 CM091764.1 scaffold835 99.16 True translocation 16057003 16057851 2468 3317 CM091752.1 scaffold835 99.18 True CONTIG scaffold835 5273 misassembled 1398041 1399142 1 1103 CM091764.1 scaffold836 99.91 True fake: scaffold gap size wrong estimation (local) 1401704 1403314 3982 5593 CM091764.1 scaffold836 99.81 True fake: scaffold gap size wrong estimation (local) 1404766 1406609 7763 9607 CM091764.1 scaffold836 99.89 True CONTIG scaffold836 9607 correct 20488329 20489466 1 1152 CM091751.1 scaffold833 98.61 True CONTIG scaffold833 1152 correct CONTIG scaffold838 416 unaligned 4314592 4315187 1 596 CM091768.1 scaffold839 99.66 True CONTIG scaffold839 596 correct CONTIG scaffold840 449 unaligned 2793664 2794784 1121 1 CM091755.1 scaffold834 99.64 True fake: scaffold gap size wrong estimation (local) 2792433 2793362 3588 2653 CM091755.1 scaffold834 98.09 True CONTIG scaffold834 4416 correct 77458 86928 9704 1 CM091763.1 scaffold841 97.38 True fake: scaffold gap size wrong estimation (local) 75444 77208 12164 10400 CM091763.1 scaffold841 99.66 True fake: scaffold gap size wrong estimation (local) 71122 73668 18582 16036 CM091763.1 scaffold841 99.96 True CONTIG scaffold841 18582 correct 1944622 1945808 1 1195 CM091764.1 scaffold843 99.0 True CONTIG scaffold843 1195 correct 19202914 19203457 544 1 CM091751.1 scaffold844 97.25 True CONTIG scaffold844 544 correct CONTIG scaffold845 812 unaligned 8797705 8798459 1 755 CM091767.1 scaffold846 99.87 True CONTIG scaffold846 755 correct 17194773 17195818 1042 1 CM091752.1 scaffold847 98.85 True CONTIG scaffold847 1042 correct CONTIG scaffold848 466 unaligned CONTIG scaffold849 441 unaligned 5624126 5626245 1 2118 CM091768.1 scaffold850 98.3 True translocation 9020206 9031971 14358 2119 CM091767.1 scaffold850 97.58 True local misassembly 9020166 9020995 15200 14359 CM091767.1 scaffold850 97.86 True local misassembly 9008676 9020733 27292 15201 CM091767.1 scaffold850 99.75 True local misassembly 9000370 9007617 35983 28702 CM091767.1 scaffold850 99.38 True CONTIG scaffold850 35983 misassembled 4471729 4472476 1055 1802 CM091754.1 scaffold851 95.45 True CONTIG scaffold851 1824 correct_unaligned CONTIG scaffold764 5553 unaligned 1704243 1706611 2382 14 CM091768.1 scaffold837 99.58 True local misassembly 1699732 1702222 5658 3168 CM091768.1 scaffold837 99.0 True indel: indel (<= 5bp) 1698649 1699731 6743 5661 CM091768.1 scaffold837 98.71 True local misassembly 1696806 1697563 8590 7833 CM091768.1 scaffold837 99.21 True indel: indel (<= 5bp) 1664995 1696690 41571 8702 CM091768.1 scaffold837 95.83 True indel: indel (> 5bp) 1659717 1664924 46915 41702 CM091768.1 scaffold837 99.21 True local misassembly 1633214 1658782 74380 47509 CM091768.1 scaffold837 99.13 True indel: indel (<= 5bp) 1558195 1633163 152700 74435 CM091768.1 scaffold837 97.71 True local misassembly 1557479 1557984 153599 153094 CM091768.1 scaffold837 99.01 True indel: indel (> 5bp) 1555290 1557082 155781 153989 CM091768.1 scaffold837 99.22 True indel: indel (<= 5bp) 1554264 1555287 156805 155782 CM091768.1 scaffold837 99.22 True local misassembly 1553439 1554039 157406 156806 CM091768.1 scaffold837 98.0 True local misassembly 1552265 1553128 158715 157852 CM091768.1 scaffold837 99.54 True indel: indel (> 5bp) 1551635 1552250 159331 158716 CM091768.1 scaffold837 99.51 True indel: indel (> 5bp) 1550372 1551632 160604 159344 CM091768.1 scaffold837 98.73 True local misassembly 1549284 1550371 162084 160997 CM091768.1 scaffold837 99.36 True indel: indel (<= 5bp) 1548760 1549280 162605 162085 CM091768.1 scaffold837 99.23 True indel: indel (<= 5bp) 1543858 1548440 168054 162921 CM091768.1 scaffold837 99.43 True fake: scaffold gap size wrong estimation (local) 1536317 1543712 175948 168534 CM091768.1 scaffold837 99.35 True indel: indel (> 5bp) 1486347 1536097 231614 176194 CM091768.1 scaffold837 98.53 True local misassembly 1481809 1485646 236156 232317 CM091768.1 scaffold837 98.91 True local misassembly 1478799 1479379 238212 237632 CM091768.1 scaffold837 99.31 True indel: indel (<= 5bp) 1477421 1478618 239588 238391 CM091768.1 scaffold837 99.33 True indel: indel (<= 5bp) 1476139 1477105 240867 239901 CM091768.1 scaffold837 99.79 True indel: indel (<= 5bp) 1474721 1476138 242286 240869 CM091768.1 scaffold837 99.72 True indel: indel (<= 5bp) 1473027 1474719 243979 242287 CM091768.1 scaffold837 99.47 True local misassembly 1471500 1472342 245646 244804 CM091768.1 scaffold837 99.64 True indel: indel (<= 5bp) 1469675 1471498 247470 245647 CM091768.1 scaffold837 99.29 True indel: indel (<= 5bp) 1468441 1469673 248703 247471 CM091768.1 scaffold837 99.43 True indel: stretch of mismatches 1467192 1468073 249952 249071 CM091768.1 scaffold837 99.55 True indel: indel (<= 5bp) 1466646 1467191 250499 249954 CM091768.1 scaffold837 98.53 True local misassembly 1463174 1465510 253934 251598 CM091768.1 scaffold837 99.79 True indel: indel (<= 5bp) 1461973 1463043 255136 254066 CM091768.1 scaffold837 99.07 True indel: indel (<= 5bp) 1460503 1461652 256609 255460 CM091768.1 scaffold837 99.48 True indel: indel (<= 5bp) 1459606 1460502 257507 256611 CM091768.1 scaffold837 98.44 True indel: indel (<= 5bp) 1459065 1459582 258050 257533 CM091768.1 scaffold837 99.61 True fake: scaffold gap size wrong estimation (local) 1457535 1458484 259619 258670 CM091768.1 scaffold837 98.42 True indel: indel (<= 5bp) 1456825 1457357 260333 259801 CM091768.1 scaffold837 97.94 True indel: indel (<= 5bp) 1456088 1456824 261074 260338 CM091768.1 scaffold837 99.59 True local misassembly 1452757 1454493 263509 261773 CM091768.1 scaffold837 99.25 True indel: indel (<= 5bp) 1451069 1452393 265195 263871 CM091768.1 scaffold837 99.85 True indel: indel (<= 5bp) 1450559 1451067 265704 265196 CM091768.1 scaffold837 100.0 True indel: indel (<= 5bp) 1449358 1450558 266906 265706 CM091768.1 scaffold837 99.5 True local misassembly 1441018 1446679 275351 269484 CM091768.1 scaffold837 98.0 True local misassembly 1439683 1440399 276536 275820 CM091768.1 scaffold837 99.58 True indel: indel (> 5bp) 1438371 1439259 277860 276972 CM091768.1 scaffold837 99.89 True indel: indel (<= 5bp) 1436636 1438279 279593 277950 CM091768.1 scaffold837 99.7 True local misassembly 1434702 1435355 281526 280873 CM091768.1 scaffold837 99.69 True indel: indel (<= 5bp) 1433522 1434571 282704 281655 CM091768.1 scaffold837 99.52 True indel: stretch of mismatches 1432080 1433051 284146 283175 CM091768.1 scaffold837 99.59 True indel: indel (<= 5bp) 1431261 1432079 284966 284148 CM091768.1 scaffold837 99.15 True fake: scaffold gap size wrong estimation (local) 1430440 1431180 286227 285487 CM091768.1 scaffold837 99.06 True indel: indel (<= 5bp) 1429247 1430438 287419 286228 CM091768.1 scaffold837 99.66 True indel: indel (<= 5bp) 1428516 1429246 288151 287421 CM091768.1 scaffold837 99.45 True local misassembly 1426052 1427652 290635 289035 CM091768.1 scaffold837 99.75 True indel: indel (<= 5bp) 1424933 1425598 291751 291086 CM091768.1 scaffold837 99.85 True indel: stretch of mismatches 1422852 1424916 293832 291768 CM091768.1 scaffold837 99.56 True local misassembly 1421791 1422851 296360 295300 CM091768.1 scaffold837 97.08 True fake: scaffold gap size wrong estimation (local) 1419824 1421570 299173 297427 CM091768.1 scaffold837 99.08 True local misassembly 1418396 1418907 300630 300119 CM091768.1 scaffold837 98.83 True local misassembly 1417231 1417766 301791 301256 CM091768.1 scaffold837 99.25 True fake: scaffold gap size wrong estimation (local) 1414852 1417230 304562 302184 CM091768.1 scaffold837 99.58 True indel: indel (<= 5bp) 1413654 1414851 305761 304564 CM091768.1 scaffold837 99.33 True indel: indel (<= 5bp) 1413122 1413652 306292 305762 CM091768.1 scaffold837 98.31 True local misassembly 1409060 1411329 310167 307898 CM091768.1 scaffold837 99.3 True indel: indel (<= 5bp) 1408031 1409038 311197 310190 CM091768.1 scaffold837 99.21 True indel: indel (<= 5bp) 1407284 1408030 311947 311201 CM091768.1 scaffold837 99.46 True local misassembly 1405634 1406588 313600 312646 CM091768.1 scaffold837 99.69 True indel: indel (<= 5bp) 1404961 1405633 314274 313602 CM091768.1 scaffold837 99.41 True fake: scaffold gap size wrong estimation (local) 1403277 1404505 316753 315525 CM091768.1 scaffold837 99.84 True local misassembly 1394386 1402604 325670 317450 CM091768.1 scaffold837 99.33 True local misassembly 1380568 1393851 339104 325976 CM091768.1 scaffold837 98.18 True fake: scaffold gap size wrong estimation (local) 1379645 1380347 340959 340257 CM091768.1 scaffold837 100.0 True indel: indel (<= 5bp) 1378888 1379644 341717 340961 CM091768.1 scaffold837 99.6 True local misassembly 1374009 1378252 346474 342250 CM091768.1 scaffold837 98.87 True indel: stretch of mismatches 1363008 1373987 357593 346496 CM091768.1 scaffold837 96.06 True indel: indel (<= 5bp) 1350760 1362960 370085 357642 CM091768.1 scaffold837 96.9 True local misassembly 1348266 1350277 373365 371354 CM091768.1 scaffold837 99.01 True indel: indel (<= 5bp) 1346824 1348265 374808 373367 CM091768.1 scaffold837 99.38 True indel: indel (> 5bp) 1345889 1346514 375752 375127 CM091768.1 scaffold837 99.36 True indel: indel (<= 5bp) 1344376 1345888 377268 375756 CM091768.1 scaffold837 99.41 True local misassembly 1321072 1343257 400138 378500 CM091768.1 scaffold837 96.08 True fake: scaffold gap size wrong estimation (local) 1317888 1320851 403500 400547 CM091768.1 scaffold837 98.9 True local misassembly 1286319 1317347 434517 403501 CM091768.1 scaffold837 96.43 True fake: scaffold gap size wrong estimation (local) 1284946 1285677 435969 435238 CM091768.1 scaffold837 99.59 True local misassembly 1283332 1284257 437583 436658 CM091768.1 scaffold837 98.7 True local misassembly 1280747 1282378 440188 438557 CM091768.1 scaffold837 99.33 True local misassembly 1279567 1280234 441370 440703 CM091768.1 scaffold837 99.4 True fake: scaffold gap size wrong estimation (local) 1278758 1279467 443059 442350 CM091768.1 scaffold837 99.01 True local misassembly 1276192 1277659 445633 444166 CM091768.1 scaffold837 98.71 True local misassembly 1274072 1275970 448394 446496 CM091768.1 scaffold837 99.05 True indel: indel (<= 5bp) 1273515 1274071 448952 448396 CM091768.1 scaffold837 99.64 True local misassembly 1260364 1272832 462599 449607 CM091768.1 scaffold837 96.08 True fake: scaffold gap size wrong estimation (local) 1211950 1258175 513542 464907 CM091768.1 scaffold837 98.82 True fake: scaffold gap size wrong estimation (local) 1207673 1211860 518314 514080 CM091768.1 scaffold837 99.0 True fake: scaffold gap size wrong estimation (local) 1110308 1207672 617839 519091 CM091768.1 scaffold837 98.57 True fake: scaffold gap size wrong estimation (local) 1062737 1110207 666057 618507 CM091768.1 scaffold837 97.99 True fake: scaffold gap size wrong estimation (local) 972671 1062408 757561 667015 CM091768.1 scaffold837 98.59 True indel: indel (> 5bp) 843133 972464 888153 757776 CM091768.1 scaffold837 98.71 True CONTIG scaffold837 888185 correct 11689761 11690402 645 1 CM091754.1 scaffold853 98.91 True fake: scaffold gap size wrong estimation (local) 11687494 11689638 3197 1052 CM091754.1 scaffold853 99.63 True fake: scaffold gap size wrong estimation (local) 11675313 11687395 15376 3298 CM091754.1 scaffold853 99.69 True indel: indel (> 5bp) 11671886 11675284 18882 15482 CM091754.1 scaffold853 99.47 True local misassembly 11643479 11671761 47189 18911 CM091754.1 scaffold853 99.73 True indel: stretch of mismatches 11626085 11643386 64576 47282 CM091754.1 scaffold853 99.43 True local misassembly 11602766 11625667 88237 65332 CM091754.1 scaffold853 99.11 True local misassembly 11528086 11602713 165511 88380 CM091754.1 scaffold853 99.33 True fake: scaffold gap size wrong estimation (local) 11455582 11527726 238925 166264 CM091754.1 scaffold853 98.7 True indel: indel (> 5bp) 11408678 11455528 288942 238989 CM091754.1 scaffold853 98.2 True fake: scaffold gap size wrong estimation (local) 11208628 11408548 491259 289071 CM091754.1 scaffold853 99.09 True indel: indel (> 5bp) 11152862 11208595 547907 491299 CM091754.1 scaffold853 98.05 True fake: scaffold gap size wrong estimation (local) 11132365 11152689 569810 548902 CM091754.1 scaffold853 99.64 True fake: scaffold gap size wrong estimation (local) 11021221 11132189 685286 570274 CM091754.1 scaffold853 98.71 True fake: scaffold gap size wrong estimation (local) 10825907 11021139 885928 686311 CM091754.1 scaffold853 99.28 True CONTIG scaffold853 885972 correct 3181604 3199392 17862 1 CM091752.1 scaffold855 99.31 True CONTIG scaffold855 17862 correct 15757984 15759692 1709 1 CM091757.1 scaffold856 100.0 True fake: scaffold gap size wrong estimation (local) 15756461 15757649 4073 2885 CM091757.1 scaffold856 100.0 True CONTIG scaffold856 4073 correct CONTIG scaffold854 4942 unaligned CONTIG scaffold858 454 unaligned CONTIG scaffold859 347 unaligned 8032351 8038229 1369 7292 CM091767.1 scaffold857 98.6 True fake: scaffold gap size wrong estimation (local) 8039445 8039989 9026 9585 CM091767.1 scaffold857 95.54 True fake: scaffold gap size wrong estimation (local) 8040462 8051053 10634 21326 CM091767.1 scaffold857 98.99 True fake: scaffold gap size wrong estimation (local) 8052803 8059122 22974 29294 CM091767.1 scaffold857 99.97 True fake: scaffold gap size wrong estimation (local) 8059404 8061753 29621 31970 CM091767.1 scaffold857 99.96 True fake: scaffold gap size wrong estimation (local) 8062124 8077271 32390 47605 CM091767.1 scaffold857 99.49 True local misassembly 8076252 8079869 47606 51224 CM091767.1 scaffold857 99.89 True fake: scaffold gap size wrong estimation (local) 8080127 8083914 51373 55160 CM091767.1 scaffold857 99.92 True fake: scaffold gap size wrong estimation (local) 8084836 8085513 56915 57592 CM091767.1 scaffold857 99.85 True fake: scaffold gap size wrong estimation (local) 8087358 8097928 59419 70572 CM091767.1 scaffold857 99.37 True local misassembly 8097475 8099829 70791 73143 CM091767.1 scaffold857 98.22 True CONTIG scaffold857 75401 correct 15454933 15462144 7240 1 CM091757.1 scaffold861 99.19 True local misassembly 15454085 15455997 9154 7241 CM091757.1 scaffold861 99.79 True fake: scaffold gap size wrong estimation (local) 15451281 15452436 11982 10807 CM091757.1 scaffold861 99.47 True fake: scaffold gap size wrong estimation (local) 15446834 15450218 16920 13486 CM091757.1 scaffold861 97.65 True CONTIG scaffold861 16920 correct CONTIG scaffold862 211 unaligned CONTIG scaffold863 699 unaligned CONTIG scaffold864 407 unaligned 6640542 6641101 560 1 CM091768.1 scaffold865 100.0 True CONTIG scaffold865 560 correct CONTIG scaffold866 396 unaligned CONTIG scaffold867 348 unaligned CONTIG scaffold860 819 unaligned CONTIG scaffold869 779 unaligned 5223116 5261490 3 38352 CM091761.1 scaffold765 99.2 True indel: indel (> 5bp) 5261630 5404679 38422 181703 CM091761.1 scaffold765 99.59 True fake: not a misassembly (possible transposable element) 7982189 7982974 181704 182489 CM091760.1 scaffold765 99.88 True fake: not a misassembly (possible transposable element) 5404776 5479664 182490 260121 CM091761.1 scaffold765 98.32 True fake: scaffold gap size wrong estimation (local) 5479773 5482000 260235 262495 CM091761.1 scaffold765 99.46 True fake: scaffold gap size wrong estimation (local) 5482764 5503936 263381 285142 CM091761.1 scaffold765 99.6 True indel: indel (> 5bp) 5503979 5612913 285174 394459 CM091761.1 scaffold765 99.0 True local misassembly 5610928 5642504 394460 426985 CM091761.1 scaffold765 99.71 True indel: indel (> 5bp) 5642629 5721806 427122 507625 CM091761.1 scaffold765 98.42 True CONTIG scaffold765 508256 correct CONTIG scaffold868 3756 unaligned 353620 370737 17212 42 CM091763.1 scaffold871 99.59 True fake: scaffold gap size wrong estimation (local) 342252 352738 29023 18124 CM091763.1 scaffold871 96.17 True CONTIG scaffold871 29023 correct CONTIG scaffold872 155781 unaligned CONTIG scaffold874 425 unaligned 14390 16066 1 1675 CM091760.1 scaffold875 99.7 True CONTIG scaffold875 1675 correct CONTIG scaffold876 435 unaligned 1970478 2025556 1683 56751 CM091759.1 scaffold870 99.78 True indel: indel (> 5bp) 2025654 2130977 56868 163876 CM091759.1 scaffold870 99.55 True fake: scaffold gap size wrong estimation (local) 2131250 2309189 165409 346627 CM091759.1 scaffold870 99.43 True CONTIG scaffold870 346651 correct CONTIG scaffold878 372 unaligned CONTIG scaffold879 751 unaligned 3233217 3233950 734 1 CM091752.1 scaffold880 99.32 True CONTIG scaffold880 734 correct 1962331 1963742 1 1412 CM091764.1 scaffold881 99.43 True indel: indel (> 5bp) 1963848 1964981 1471 2602 CM091764.1 scaffold881 96.48 True local misassembly 1964244 1966655 2603 5009 CM091764.1 scaffold881 98.8 True CONTIG scaffold881 5009 correct 14730273 14731219 1 947 CM091752.1 scaffold882 99.47 True CONTIG scaffold882 947 correct 8482996 8545591 243 63568 CM091766.1 scaffold788 99.12 True indel: indel (<= 5bp) 8545700 8702475 63678 223521 CM091766.1 scaffold788 99.42 True local misassembly 8701112 8726533 223522 248962 CM091766.1 scaffold788 99.72 True fake: scaffold gap size wrong estimation (local) 8726836 8752395 249383 275080 CM091766.1 scaffold788 99.33 True local misassembly 8752396 8827364 275586 355269 CM091766.1 scaffold788 98.9 True CONTIG scaffold788 356896 correct 612150 612700 603 55 CM091755.1 scaffold884 98.0 True CONTIG scaffold884 719 correct CONTIG scaffold885 481 unaligned CONTIG scaffold886 790 unaligned CONTIG scaffold887 2966 unaligned CONTIG scaffold888 957 unaligned 7756141 7806317 52450 1894 CM091767.1 scaffold889 98.92 True local misassembly 7752686 7755911 56060 52835 CM091767.1 scaffold889 99.91 True fake: not a misassembly (possible transposable element) 7623771 7624560 56061 56850 CM091767.1 scaffold889 99.07 True fake: not a misassembly (possible transposable element) 7744402 7752763 65214 56851 CM091767.1 scaffold889 99.92 True CONTIG scaffold889 65214 correct CONTIG scaffold873 8279 unaligned CONTIG scaffold891 1044 unaligned 6651791 6667076 15742 1 CM091767.1 scaffold883 97.58 True indel: indel (> 5bp) 6593326 6651489 75065 16026 CM091767.1 scaffold883 97.62 True local misassembly 6585725 6592469 82176 75440 CM091767.1 scaffold883 99.1 True fake: scaffold gap size wrong estimation (local) 6574784 6585626 94538 83050 CM091767.1 scaffold883 98.26 True fake: scaffold gap size wrong estimation (local) 6572111 6573450 96674 95324 CM091767.1 scaffold883 98.52 True local misassembly 6467967 6574387 203667 96675 CM091767.1 scaffold883 99.22 True relocation, inconsistency = 36875 6293528 6431090 342487 203669 CM091767.1 scaffold883 99.64 True CONTIG scaffold883 342487 misassembled 3144884 3145683 380 1236 CM091752.1 scaffold893 97.43 True fake: scaffold gap size wrong estimation (local) 3146057 3150852 2700 7503 CM091752.1 scaffold893 99.6 True CONTIG scaffold893 7503 correct CONTIG scaffold894 275 unaligned 23649 27284 1 3650 CM091758.1 scaffold895 98.12 True CONTIG scaffold895 3650 correct 4278196 4280898 1 2712 CM091768.1 scaffold896 97.65 True CONTIG scaffold896 2732 correct CONTIG scaffold897 42666 unaligned 15096637 15097241 1 605 CM091752.1 scaffold898 99.83 True CONTIG scaffold898 605 correct 10235496 10239824 6477 2114 CM091765.1 scaffold877 98.97 True unknown 10219845 10233565 22152 8384 CM091765.1 scaffold877 99.12 True unknown 10095518 10096597 29529 30611 CM091765.1 scaffold877 95.12 True unknown 3321363 3321925 54714 55276 CM091753.1 scaffold877 99.82 True unknown 10195752 10219744 86000 61912 CM091765.1 scaffold877 99.69 True unknown 10139855 10170077 141783 111556 CM091765.1 scaffold877 99.89 True unknown CONTIG scaffold877 168054 mis_unaligned CONTIG scaffold892 4268 unaligned CONTIG scaffold901 383 unaligned CONTIG scaffold902 665 unaligned CONTIG scaffold903 638 unaligned 3698656 3699917 3773 2512 CM091768.1 scaffold904 100.0 True CONTIG scaffold904 3773 correct_unaligned 18975 23375 1 4404 CM091752.1 scaffold905 99.34 True CONTIG scaffold905 4404 correct 17558318 17558898 581 1 CM091751.1 scaffold906 99.83 True fake: scaffold gap size wrong estimation (local) 17543090 17557626 16370 1210 CM091751.1 scaffold906 99.66 True CONTIG scaffold906 16370 correct CONTIG scaffold907 480 unaligned 6372876 6375979 402 3603 CM091760.1 scaffold908 97.04 True CONTIG scaffold908 5612 correct CONTIG scaffold909 409 unaligned 16167204 16167759 550 1 CM091757.1 scaffold910 98.33 True CONTIG scaffold910 1191 correct 936143 936985 1 843 CM091764.1 scaffold911 100.0 True fake: scaffold gap size wrong estimation (local) 937156 947148 1358 11803 CM091764.1 scaffold911 95.26 True indel: indel (<= 5bp) 947214 955898 11868 20552 CM091764.1 scaffold911 99.88 True CONTIG scaffold911 20552 correct CONTIG scaffold912 418 unaligned CONTIG scaffold913 343 unaligned 9499465 9690054 4749 203395 CM091765.1 scaffold842 98.81 True local misassembly 9690111 9697882 203851 211616 CM091765.1 scaffold842 99.91 True local misassembly 9697873 9707242 212043 221346 CM091765.1 scaffold842 99.18 True fake: scaffold gap size wrong estimation (local) 9707582 9715078 222248 229746 CM091765.1 scaffold842 99.92 True local misassembly 9714252 9774817 229747 291561 CM091765.1 scaffold842 98.37 True local misassembly 9775032 9858022 292044 376687 CM091765.1 scaffold842 99.29 True CONTIG scaffold842 376687 correct CONTIG scaffold915 310 unaligned 6550125 6551026 1191 289 CM091759.1 scaffold916 99.34 True CONTIG scaffold916 1191 correct 16858588 16859138 575 1122 CM091756.1 scaffold917 96.55 True CONTIG scaffold917 1122 correct_unaligned CONTIG scaffold918 289 unaligned CONTIG scaffold914 1021 unaligned 5339652 5341510 1 1859 CM091754.1 scaffold919 100.0 True fake: not a misassembly (possible transposable element) 5339796 5341287 3351 1860 CM091754.1 scaffold919 100.0 True fake: not a misassembly (possible transposable element) 5342179 5347946 3352 9123 CM091754.1 scaffold919 99.86 True CONTIG scaffold919 9123 correct CONTIG scaffold921 398 unaligned CONTIG scaffold922 416 unaligned 17367494 17368390 1 979 CM091752.1 scaffold923 98.89 True CONTIG scaffold923 1156 correct CONTIG scaffold924 491 unaligned 9659544 9777398 10 118882 CM091756.1 scaffold920 98.5 True indel: indel (> 5bp) 9777507 9783133 118926 124574 CM091756.1 scaffold920 98.43 True indel: indel (> 5bp) 9783286 9819142 124689 160174 CM091756.1 scaffold920 96.82 True indel: indel (<= 5bp) 9819205 9842920 160242 184710 CM091756.1 scaffold920 98.81 True local misassembly 9843128 9847640 185345 189860 CM091756.1 scaffold920 99.49 True CONTIG scaffold920 189860 correct CONTIG scaffold925 466 unaligned 3414620 3476553 8 61728 CM091768.1 scaffold927 97.31 True CONTIG scaffold927 61728 correct CONTIG scaffold928 3565 unaligned CONTIG scaffold929 703 unaligned 9354026 9380482 1 26824 CM091767.1 scaffold930 98.61 True CONTIG scaffold930 26824 correct CONTIG scaffold926 2587 unaligned CONTIG scaffold932 348 unaligned CONTIG scaffold933 366 unaligned CONTIG scaffold934 387 unaligned 2253243 2271142 17891 1 CM091764.1 scaffold899 98.14 True local misassembly 2221168 2252987 51175 17981 CM091764.1 scaffold899 99.21 True fake: scaffold gap size wrong estimation (local) 2219502 2220976 52910 51436 CM091764.1 scaffold899 100.0 True local misassembly 2214397 2215083 53709 53023 CM091764.1 scaffold899 100.0 True indel: indel (<= 5bp) 2213638 2214396 54469 53711 CM091764.1 scaffold899 99.87 True indel: indel (> 5bp) 2211212 2213637 56925 54500 CM091764.1 scaffold899 99.96 True indel: indel (<= 5bp) 2210159 2211211 57979 56927 CM091764.1 scaffold899 99.72 True local misassembly 2208842 2209429 59130 58543 CM091764.1 scaffold899 99.83 True local misassembly 2167754 2208766 100570 59332 CM091764.1 scaffold899 99.92 True indel: indel (> 5bp) 2155844 2167690 112500 100646 CM091764.1 scaffold899 99.76 True CONTIG scaffold899 114397 correct 15496445 15498862 2402 1 CM091757.1 scaffold936 99.3 True fake: not a misassembly (possible transposable element) 10338546 10339448 2485 3387 CM091754.1 scaffold936 99.22 True fake: not a misassembly (possible transposable element) 15492130 15495876 7464 3687 CM091757.1 scaffold936 99.02 True indel: indel (> 5bp) 15490722 15492037 8912 7573 CM091757.1 scaffold936 97.16 True local misassembly 15490643 15491408 9687 8922 CM091757.1 scaffold936 99.22 True local misassembly 15488437 15490205 11966 10198 CM091757.1 scaffold936 100.0 True indel: indel (> 5bp) 15487923 15488436 12533 12020 CM091757.1 scaffold936 99.61 True local misassembly 15487163 15487698 13381 12846 CM091757.1 scaffold936 98.69 True indel: indel (> 5bp) 15484708 15486999 15813 13522 CM091757.1 scaffold936 99.69 True fake: scaffold gap size wrong estimation (local) 15483483 15484511 17565 16548 CM091757.1 scaffold936 97.38 True fake: scaffold gap size wrong estimation (local) 15481666 15483553 21282 19353 CM091757.1 scaffold936 97.48 True fake: scaffold gap size wrong estimation (local) 15480073 15481215 23258 22116 CM091757.1 scaffold936 100.0 True CONTIG scaffold936 23258 correct 8140621 8149285 8660 1 CM091767.1 scaffold935 99.86 True fake: scaffold gap size wrong estimation (local) 8134828 8138629 13748 9947 CM091767.1 scaffold935 99.97 True fake: scaffold gap size wrong estimation (local) 8133398 8134228 15426 14596 CM091767.1 scaffold935 99.76 True indel: indel (<= 5bp) 8131383 8133395 17439 15427 CM091767.1 scaffold935 99.65 True local misassembly 8128473 8131382 21110 18201 CM091767.1 scaffold935 100.0 True indel: indel (<= 5bp) 8127694 8128472 21891 21113 CM091767.1 scaffold935 99.87 True fake: scaffold gap size wrong estimation (local) 8112309 8127094 37732 22758 CM091767.1 scaffold935 98.06 True fake: scaffold gap size wrong estimation (local) 8103708 8111865 46424 38266 CM091767.1 scaffold935 99.96 True fake: scaffold gap size wrong estimation (local) 8101822 8103491 48658 46989 CM091767.1 scaffold935 99.58 True CONTIG scaffold935 48658 correct CONTIG scaffold938 4371 unaligned 8713305 8714412 1352 245 CM091767.1 scaffold931 99.91 True local misassembly 8712484 8713304 2643 1823 CM091767.1 scaffold931 100.0 True CONTIG scaffold931 2643 correct 6290915 6292743 1817 1 CM091767.1 scaffold900 98.26 True fake: scaffold gap size wrong estimation (local) 6241201 6290463 52542 2243 CM091767.1 scaffold900 97.68 True fake: scaffold gap size wrong estimation (local) 6224714 6240364 69451 53787 CM091767.1 scaffold900 99.68 True local misassembly 6217680 6224832 77169 69882 CM091767.1 scaffold900 97.48 True local misassembly 6170756 6216750 124679 78375 CM091767.1 scaffold900 98.29 True local misassembly 6119300 6170689 176666 125689 CM091767.1 scaffold900 98.62 True local misassembly 6110515 6119827 186345 177025 CM091767.1 scaffold900 99.14 True local misassembly 5873130 6111320 427435 186363 CM091767.1 scaffold900 98.71 True fake: scaffold gap size wrong estimation (local) 5871390 5872802 429377 427964 CM091767.1 scaffold900 98.51 True indel: indel (<= 5bp) 5850136 5871291 451490 429478 CM091767.1 scaffold900 98.94 True fake: scaffold gap size wrong estimation (local) 5844792 5849675 456983 452097 CM091767.1 scaffold900 98.83 True fake: scaffold gap size wrong estimation (local) 5826512 5844651 476490 457450 CM091767.1 scaffold900 97.92 True CONTIG scaffold900 476507 correct CONTIG scaffold939 1311 unaligned 1933652 1934847 1196 1 CM091759.1 scaffold942 99.83 True CONTIG scaffold942 1240 correct 5053665 5378814 328656 1 CM091751.1 scaffold852 98.85 True fake: scaffold gap size wrong estimation (local) 5048555 5053271 334478 329768 CM091751.1 scaffold852 99.05 True local misassembly 4859215 5047807 525673 335367 CM091751.1 scaffold852 98.43 True indel: indel (> 5bp) 4843012 4859115 541814 525727 CM091751.1 scaffold852 98.74 True local misassembly 4713813 4842636 673592 542367 CM091751.1 scaffold852 97.7 True fake: scaffold gap size wrong estimation (local) 4672823 4713562 717216 674669 CM091751.1 scaffold852 99.29 True fake: scaffold gap size wrong estimation (local) 4635415 4672517 755035 717939 CM091751.1 scaffold852 99.69 True indel: indel (> 5bp) 4528030 4635384 863578 755087 CM091751.1 scaffold852 99.23 True local misassembly 4486376 4528805 907384 863584 CM091751.1 scaffold852 97.37 True indel: indel (> 5bp) 4240145 4486305 1158970 907475 CM091751.1 scaffold852 99.18 True local misassembly 4215265 4240049 1185555 1159160 CM091751.1 scaffold852 98.98 True fake: scaffold gap size wrong estimation (local) 4197152 4215179 1204311 1186308 CM091751.1 scaffold852 98.89 True fake: scaffold gap size wrong estimation (local) 4188506 4196798 1214388 1205454 CM091751.1 scaffold852 99.29 True fake: scaffold gap size wrong estimation (local) 4152093 4188365 1252081 1215538 CM091751.1 scaffold852 99.06 True indel: indel (> 5bp) 4003812 4152025 1403573 1252182 CM091751.1 scaffold852 99.07 True indel: indel (> 5bp) 3994138 4003731 1413755 1403707 CM091751.1 scaffold852 99.13 True indel: indel (> 5bp) 3991813 3994055 1416170 1413917 CM091751.1 scaffold852 97.61 True indel: indel (> 5bp) 3916545 3991680 1492742 1416338 CM091751.1 scaffold852 99.18 True indel: indel (> 5bp) 3913663 3916487 1495615 1492792 CM091751.1 scaffold852 99.47 True indel: indel (<= 5bp) 3883386 3913616 1525929 1495664 CM091751.1 scaffold852 99.04 True local misassembly 3837964 3885375 1573579 1525930 CM091751.1 scaffold852 98.82 True fake: scaffold gap size wrong estimation (local) 3762489 3837828 1650821 1573927 CM091751.1 scaffold852 98.57 True fake: scaffold gap size wrong estimation (local) 3755586 3762217 1658238 1651606 CM091751.1 scaffold852 99.61 True indel: indel (> 5bp) 3750646 3755547 1663198 1658300 CM091751.1 scaffold852 99.14 True fake: scaffold gap size wrong estimation (local) 3711023 3750363 1703718 1663476 CM091751.1 scaffold852 99.17 True indel: indel (> 5bp) 3675948 3710973 1738960 1703788 CM091751.1 scaffold852 99.22 True indel: indel (> 5bp) 3520682 3675921 1895397 1739064 CM091751.1 scaffold852 99.12 True CONTIG scaffold852 1895397 correct CONTIG scaffold944 427 unaligned CONTIG scaffold943 689 unaligned 2830446 2847022 18163 1297 CM091768.1 scaffold940 97.22 True local misassembly 2829615 2830184 19684 19115 CM091768.1 scaffold940 98.42 True local misassembly 2827186 2829088 22339 20430 CM091768.1 scaffold940 99.16 True local misassembly 2826152 2826718 23202 22636 CM091768.1 scaffold940 98.94 True indel: indel (> 5bp) 2824827 2825932 24519 23414 CM091768.1 scaffold940 99.19 True local misassembly 2823370 2823966 25730 25134 CM091768.1 scaffold940 99.5 True indel: indel (<= 5bp) 2822690 2823369 26411 25732 CM091768.1 scaffold940 99.12 True indel: indel (<= 5bp) 2821597 2822400 27506 26703 CM091768.1 scaffold940 99.63 True local misassembly 2817449 2819199 30575 28825 CM091768.1 scaffold940 99.54 True local misassembly 2815142 2816239 32892 31795 CM091768.1 scaffold940 99.45 True indel: indel (<= 5bp) 2813213 2814802 34820 33231 CM091768.1 scaffold940 99.37 True indel: indel (<= 5bp) 2812538 2813165 35493 34867 CM091768.1 scaffold940 98.09 True local misassembly 2810278 2812011 37525 35792 CM091768.1 scaffold940 99.42 True indel: stretch of mismatches 2809113 2810096 38690 37707 CM091768.1 scaffold940 99.7 True fake: scaffold gap size wrong estimation (local) 2806578 2807378 41565 40765 CM091768.1 scaffold940 99.88 True indel: indel (<= 5bp) 2805645 2806153 42493 41985 CM091768.1 scaffold940 99.61 True indel: indel (<= 5bp) 2803235 2805643 44902 42494 CM091768.1 scaffold940 99.58 True local misassembly 2800957 2801744 46648 45861 CM091768.1 scaffold940 99.49 True indel: indel (<= 5bp) 2800046 2800956 47560 46650 CM091768.1 scaffold940 99.56 True indel: indel (<= 5bp) 2798252 2800045 49355 47562 CM091768.1 scaffold940 99.28 True local misassembly 2795895 2796647 51068 50316 CM091768.1 scaffold940 99.87 True indel: indel (<= 5bp) 2795119 2795683 51845 51281 CM091768.1 scaffold940 99.47 True local misassembly 2793409 2794305 53572 52676 CM091768.1 scaffold940 99.33 True local misassembly 2791075 2792295 55856 54636 CM091768.1 scaffold940 99.59 True indel: indel (<= 5bp) 2790212 2790842 56715 56085 CM091768.1 scaffold940 99.84 True indel: indel (> 5bp) 2787982 2789715 58927 57194 CM091768.1 scaffold940 99.42 True local misassembly 2785085 2786177 61821 60729 CM091768.1 scaffold940 99.18 True local misassembly 2784289 2784862 62395 61822 CM091768.1 scaffold940 99.3 True indel: indel (<= 5bp) 2782587 2783931 64095 62751 CM091768.1 scaffold940 99.48 True local misassembly 2780591 2781683 66729 65637 CM091768.1 scaffold940 98.81 True fake: scaffold gap size wrong estimation (local) 2779241 2779879 68104 67464 CM091768.1 scaffold940 96.88 True fake: scaffold gap size wrong estimation (local) 2777682 2779020 69811 68472 CM091768.1 scaffold940 98.96 True indel: indel (> 5bp) 2766952 2777652 80975 69851 CM091768.1 scaffold940 95.18 True fake: scaffold gap size wrong estimation (local) 2757116 2767068 94732 84279 CM091768.1 scaffold940 96.87 True indel: indel (> 5bp) 2751469 2757083 100386 94802 CM091768.1 scaffold940 97.76 True local misassembly 2750512 2751235 101698 100975 CM091768.1 scaffold940 98.21 True local misassembly 2748790 2749477 104328 103641 CM091768.1 scaffold940 99.27 True local misassembly 2742126 2743761 108957 107322 CM091768.1 scaffold940 98.72 True local misassembly 2739612 2740555 111053 110110 CM091768.1 scaffold940 97.35 True local misassembly 2733331 2738350 117215 112203 CM091768.1 scaffold940 98.35 True local misassembly 2716194 2732881 133953 117792 CM091768.1 scaffold940 95.97 True local misassembly 2714028 2715443 135878 134463 CM091768.1 scaffold940 98.45 True indel: indel (> 5bp) 2713484 2714027 136428 135885 CM091768.1 scaffold940 100.0 True local misassembly 2711408 2712537 138744 137615 CM091768.1 scaffold940 98.32 True indel: indel (<= 5bp) 2710733 2711404 139416 138745 CM091768.1 scaffold940 99.4 True indel: indel (> 5bp) 2710145 2710725 139997 139417 CM091768.1 scaffold940 99.14 True fake: scaffold gap size wrong estimation (local) 2709241 2710144 141389 140486 CM091768.1 scaffold940 97.79 True local misassembly 2708133 2708706 142504 141931 CM091768.1 scaffold940 99.65 True local misassembly 2703597 2704841 146708 145464 CM091768.1 scaffold940 99.76 True local misassembly 2702512 2703058 147786 147240 CM091768.1 scaffold940 99.09 True indel: indel (<= 5bp) 2701465 2702080 148838 148223 CM091768.1 scaffold940 99.68 True indel: indel (<= 5bp) 2700780 2701458 149526 148848 CM091768.1 scaffold940 99.41 True indel: indel (<= 5bp) 2699167 2700779 151140 149528 CM091768.1 scaffold940 98.64 True indel: indel (<= 5bp) 2698549 2699150 151757 151156 CM091768.1 scaffold940 99.17 True indel: indel (<= 5bp) 2697908 2698547 152397 151758 CM091768.1 scaffold940 99.69 True local misassembly 2695126 2696542 155183 153767 CM091768.1 scaffold940 99.22 True fake: scaffold gap size wrong estimation (local) 2693532 2694562 156676 155646 CM091768.1 scaffold940 98.25 True local misassembly 2691935 2692989 157999 156945 CM091768.1 scaffold940 99.24 True fake: scaffold gap size wrong estimation (local) 2652158 2691440 197876 158670 CM091768.1 scaffold940 99.11 True local misassembly 2650325 2651554 199539 198310 CM091768.1 scaffold940 99.59 True indel: stretch of mismatches 2648954 2649945 200910 199919 CM091768.1 scaffold940 99.5 True local misassembly 2648098 2648680 202076 201494 CM091768.1 scaffold940 97.94 True CONTIG scaffold940 202990 correct CONTIG scaffold947 726 unaligned CONTIG scaffold945 1212 unaligned CONTIG scaffold949 547 unaligned 142713 148981 6269 1 CM091761.1 scaffold941 99.97 True CONTIG scaffold941 7030 correct CONTIG scaffold951 426 unaligned 16011419 16011980 1365 804 CM091752.1 scaffold952 98.75 True local misassembly 16010658 16011271 2219 1606 CM091752.1 scaffold952 98.37 True CONTIG scaffold952 2317 correct CONTIG scaffold953 303 unaligned CONTIG scaffold950 723 unaligned CONTIG scaffold954 382 unaligned 17058291 17060343 1 2053 CM091752.1 scaffold955 99.85 True CONTIG scaffold955 2053 correct CONTIG scaffold956 349 unaligned CONTIG scaffold958 74078 unaligned CONTIG scaffold959 458 unaligned CONTIG scaffold957 435 unaligned 9380779 9382239 1 1461 CM091767.1 scaffold960 99.93 True indel: indel (<= 5bp) 9382240 9383252 1463 2475 CM091767.1 scaffold960 100.0 True indel: indel (<= 5bp) 9383254 9384679 2476 3901 CM091767.1 scaffold960 98.74 True local misassembly 9384685 9387664 4247 7226 CM091767.1 scaffold960 99.8 True fake: scaffold gap size wrong estimation (local) 9389269 9399881 9150 19849 CM091767.1 scaffold960 99.12 True fake: scaffold gap size wrong estimation (local) 9400521 9404717 20744 24944 CM091767.1 scaffold960 99.57 True local misassembly 9405269 9407438 25451 27669 CM091767.1 scaffold960 97.57 True CONTIG scaffold960 27669 correct 4477293 4715211 238912 1 CM091763.1 scaffold806 99.3 True fake: scaffold gap size wrong estimation (local) 4390005 4476918 325061 239209 CM091763.1 scaffold806 97.29 True local misassembly 4314409 4391520 403482 325309 CM091763.1 scaffold806 98.1 True local misassembly 4208206 4314029 510421 403721 CM091763.1 scaffold806 98.7 True fake: scaffold gap size wrong estimation (local) 4085612 4208051 633640 510822 CM091763.1 scaffold806 99.3 True indel: indel (> 5bp) 3978058 4085491 743013 633776 CM091763.1 scaffold806 98.78 True local misassembly 3950381 3977966 770933 743302 CM091763.1 scaffold806 99.62 True CONTIG scaffold806 770933 correct 33238 33794 4562 5118 CM091768.1 scaffold946 97.13 True CONTIG scaffold946 6620 correct_unaligned CONTIG scaffold962 289624 unaligned CONTIG scaffold963 426 unaligned 17280601 17282306 1708 1 CM091752.1 scaffold964 98.89 True CONTIG scaffold964 1708 correct 16173342 16174780 1 1439 CM091757.1 scaffold966 100.0 True fake: scaffold gap size wrong estimation (local) 16175664 16176500 3266 4093 CM091757.1 scaffold966 98.92 True CONTIG scaffold966 4093 correct CONTIG scaffold967 1041 unaligned CONTIG scaffold969 1449 unaligned CONTIG scaffold970 641 unaligned CONTIG scaffold961 1305 unaligned 17116938 17117657 720 1 CM091752.1 scaffold972 99.58 True CONTIG scaffold972 720 correct 91579 93306 1726 1 CM091753.1 scaffold968 99.83 True indel: indel (> 5bp) 89665 91482 3664 1847 CM091753.1 scaffold968 99.72 True fake: scaffold gap size wrong estimation (local) 81565 89778 13150 4933 CM091753.1 scaffold968 99.76 True fake: scaffold gap size wrong estimation (local) 79613 81438 15107 13282 CM091753.1 scaffold968 99.51 True local misassembly 76631 80701 19187 15108 CM091753.1 scaffold968 99.22 True fake: scaffold gap size wrong estimation (local) 64700 75444 30623 19927 CM091753.1 scaffold968 99.25 True fake: scaffold gap size wrong estimation (local) 62921 64597 33037 31361 CM091753.1 scaffold968 100.0 True CONTIG scaffold968 33414 correct 6141890 6148173 1 6284 CM091768.1 scaffold965 100.0 True fake: scaffold gap size wrong estimation (local) 6150236 6154512 9391 13747 CM091768.1 scaffold965 99.34 True fake: scaffold gap size wrong estimation (local) 6155224 6155867 14959 15602 CM091768.1 scaffold965 98.76 True fake: not a misassembly (possible transposable element) 7613409 7614405 16804 15808 CM091767.1 scaffold965 99.25 True fake: not a misassembly (possible transposable element) 6156006 6162192 16805 23482 CM091768.1 scaffold965 98.89 True CONTIG scaffold965 23482 correct CONTIG scaffold971 664 unaligned CONTIG scaffold973 4164 unaligned CONTIG scaffold977 376 unaligned 2632424 2637336 4913 1 CM091761.1 scaffold890 99.86 True indel: indel (> 5bp) 2583736 2632384 53719 4970 CM091761.1 scaffold890 99.74 True indel: indel (> 5bp) 2516845 2583551 120683 53976 CM091761.1 scaffold890 99.83 True local misassembly 2510009 2518498 129169 120684 CM091761.1 scaffold890 99.4 True indel: indel (> 5bp) 2487200 2509943 151960 129218 CM091761.1 scaffold890 99.64 True fake: scaffold gap size wrong estimation (local) 2465166 2487106 175338 152945 CM091761.1 scaffold890 97.54 True local misassembly 2438421 2464866 203422 176098 CM091761.1 scaffold890 99.41 True indel: indel (> 5bp) 2392796 2438389 250115 203471 CM091761.1 scaffold890 99.59 True indel: indel (> 5bp) 2322177 2392710 325757 250142 CM091761.1 scaffold890 99.46 True local misassembly 2299531 2322680 349549 325761 CM091761.1 scaffold890 99.5 True local misassembly 2274773 2300721 375754 349568 CM091761.1 scaffold890 99.33 True local misassembly 2251678 2276888 402661 375755 CM091761.1 scaffold890 97.11 True fake: scaffold gap size wrong estimation (local) 2249126 2251079 405158 403205 CM091761.1 scaffold890 99.8 True indel: indel (<= 5bp) 2247256 2249125 407029 405160 CM091761.1 scaffold890 99.84 True indel: indel (<= 5bp) 2244916 2246988 409372 407300 CM091761.1 scaffold890 99.95 True indel: indel (<= 5bp) 2243949 2244914 410338 409373 CM091761.1 scaffold890 100.0 True indel: indel (<= 5bp) 2243330 2243948 410958 410340 CM091761.1 scaffold890 99.52 True local misassembly 2242774 2243310 411947 411411 CM091761.1 scaffold890 99.81 True local misassembly 2204787 2243293 452001 411948 CM091761.1 scaffold890 98.52 True fake: scaffold gap size wrong estimation (local) 2004347 2204660 664978 452345 CM091761.1 scaffold890 99.47 True relocation, inconsistency = 66708 1864803 1937632 741091 664985 CM091761.1 scaffold890 99.25 True indel: indel (> 5bp) 1771091 1864733 837866 741176 CM091761.1 scaffold890 99.04 True indel: indel (<= 5bp) 1745003 1771022 864426 837939 CM091761.1 scaffold890 99.42 True fake: scaffold gap size wrong estimation (local) 1714640 1744847 897461 865420 CM091761.1 scaffold890 99.41 True indel: indel (> 5bp) 1705573 1714538 907344 897569 CM091761.1 scaffold890 98.56 True fake: scaffold gap size wrong estimation (local) 1676527 1705433 939136 907582 CM091761.1 scaffold890 98.83 True fake: scaffold gap size wrong estimation (local) 1659210 1676046 957465 940124 CM091761.1 scaffold890 99.31 True fake: scaffold gap size wrong estimation (local) 1640893 1659059 977415 958393 CM091761.1 scaffold890 99.21 True local misassembly 1553336 1640737 1065803 977960 CM091761.1 scaffold890 98.93 True fake: scaffold gap size wrong estimation (local) 1452304 1553147 1168481 1066731 CM091761.1 scaffold890 98.84 True local misassembly 1405459 1451851 1216942 1170260 CM091761.1 scaffold890 99.21 True fake: scaffold gap size wrong estimation (local) 1404435 1405199 1218412 1217634 CM091761.1 scaffold890 99.74 True CONTIG scaffold890 1220237 misassembled CONTIG scaffold979 471 unaligned CONTIG scaffold978 371 unaligned CONTIG scaffold981 446 unaligned 16765222 16795305 30722 1 CM091756.1 scaffold980 97.58 True CONTIG scaffold980 30722 correct CONTIG scaffold982 669 unaligned CONTIG scaffold984 482 unaligned 4453334 4454084 1006 249 CM091754.1 scaffold985 97.1 True CONTIG scaffold985 1009 correct CONTIG scaffold983 794 unaligned CONTIG scaffold986 657 unaligned 5452363 5452878 3178 2663 CM091752.1 scaffold987 100.0 True local misassembly 5451225 5452182 4136 3179 CM091752.1 scaffold987 100.0 True indel: indel (> 5bp) 5450513 5451109 4807 4211 CM091752.1 scaffold987 100.0 True CONTIG scaffold987 7006 correct CONTIG scaffold976 4029 unaligned CONTIG scaffold988 397 unaligned CONTIG scaffold991 659 unaligned CONTIG scaffold992 400 unaligned 618308 623514 1 5258 CM091755.1 scaffold989 98.95 True fake: scaffold gap size wrong estimation (local) 623721 624251 5885 6406 CM091755.1 scaffold989 96.99 True fake: scaffold gap size wrong estimation (local) 624438 631126 7387 14086 CM091755.1 scaffold989 99.79 True CONTIG scaffold989 14086 correct 19546670 19549073 2766 362 CM091751.1 scaffold990 99.09 True local misassembly 19542682 19546523 6989 3163 CM091751.1 scaffold990 98.57 True fake: scaffold gap size wrong estimation (local) 19540800 19542103 9300 7989 CM091751.1 scaffold990 97.95 True CONTIG scaffold990 9515 correct CONTIG scaffold993 1080 unaligned 5823284 5825291 2673 666 CM091767.1 scaffold994 99.25 True fake: scaffold gap size wrong estimation (local) 5820978 5823047 5251 3182 CM091767.1 scaffold994 99.52 True local misassembly 5820245 5820977 6614 5882 CM091767.1 scaffold994 99.18 True indel: indel (> 5bp) 5803591 5820138 24096 6729 CM091767.1 scaffold994 97.42 True local misassembly 5799934 5800746 28375 27563 CM091767.1 scaffold994 98.77 True local misassembly 5798836 5799411 29657 29082 CM091767.1 scaffold994 98.44 True fake: scaffold gap size wrong estimation (local) 5796987 5798835 31522 29674 CM091767.1 scaffold994 99.03 True local misassembly 5795818 5796726 32431 31523 CM091767.1 scaffold994 99.23 True local misassembly 5793955 5795607 35100 33448 CM091767.1 scaffold994 98.73 True local misassembly 5788008 5793517 41237 35720 CM091767.1 scaffold994 98.94 True fake: scaffold gap size wrong estimation (local) 5780619 5787877 48791 41394 CM091767.1 scaffold994 96.74 True local misassembly 5775892 5780520 54360 49124 CM091767.1 scaffold994 96.77 True indel: indel (> 5bp) 5775103 5775854 55138 54387 CM091767.1 scaffold994 99.6 True indel: indel (> 5bp) 5773293 5774695 56960 55558 CM091767.1 scaffold994 99.36 True indel: indel (<= 5bp) 5772420 5773291 57832 56961 CM091767.1 scaffold994 98.97 True indel: indel (> 5bp) 5771752 5772354 58491 57889 CM091767.1 scaffold994 99.5 True indel: indel (> 5bp) 5770921 5771751 59353 58523 CM091767.1 scaffold994 99.04 True fake: scaffold gap size wrong estimation (local) 5769133 5770275 61856 60714 CM091767.1 scaffold994 99.65 True local misassembly 5766948 5768175 63625 62398 CM091767.1 scaffold994 99.1 True fake: scaffold gap size wrong estimation (local) 5762848 5766796 67893 63761 CM091767.1 scaffold994 98.3 True local misassembly 5760683 5762249 70276 68710 CM091767.1 scaffold994 99.49 True indel: indel (<= 5bp) 5758355 5760682 72606 70279 CM091767.1 scaffold994 99.4 True indel: indel (> 5bp) 5756808 5758348 74163 72623 CM091767.1 scaffold994 98.96 True fake: scaffold gap size wrong estimation (local) 5729717 5755077 102595 76298 CM091767.1 scaffold994 99.02 True indel: indel (> 5bp) 5727792 5729585 104533 102740 CM091767.1 scaffold994 99.44 True fake: scaffold gap size wrong estimation (local) 5707007 5726835 125995 105949 CM091767.1 scaffold994 98.92 True fake: scaffold gap size wrong estimation (local) 5705267 5706688 128736 127319 CM091767.1 scaffold994 98.46 True CONTIG scaffold994 128736 correct 923327 925356 1 2030 CM091764.1 scaffold997 99.61 True local misassembly 925497 933818 2573 11275 CM091764.1 scaffold997 99.93 True CONTIG scaffold997 11275 correct CONTIG scaffold995 7500 unaligned 14585292 14586594 1302 1 CM091756.1 scaffold996 99.62 True fake: scaffold gap size wrong estimation (local) 14505685 14584906 81389 2209 CM091756.1 scaffold996 99.51 True indel: indel (> 5bp) 14499472 14505628 87612 81453 CM091756.1 scaffold996 99.2 True fake: scaffold gap size wrong estimation (local) 14498219 14499092 89479 88610 CM091756.1 scaffold996 98.63 True CONTIG scaffold996 89479 correct 5439666 5455412 16000 253 CM091768.1 scaffold1000 99.99 True CONTIG scaffold1000 16000 correct CONTIG scaffold1001 486 unaligned 19039323 19040259 948 1 CM091751.1 scaffold1002 96.95 True fake: scaffold gap size wrong estimation (local) 19032819 19039112 8158 1940 CM091751.1 scaffold1002 97.56 True CONTIG scaffold1002 8158 correct 2877398 2877905 1819 1312 CM091762.1 scaffold1003 97.05 True CONTIG scaffold1003 11433 correct_unaligned 6082505 6084448 1990 1 CM091754.1 scaffold948 97.19 True local misassembly 6082219 6083515 3287 1991 CM091754.1 scaffold948 99.38 True CONTIG scaffold948 9559 correct CONTIG scaffold1005 745 unaligned CONTIG scaffold1006 575 unaligned 4145293 4146611 1322 1 CM091768.1 scaffold1004 98.49 True fake: not a misassembly (possible transposable element) 4145325 4146193 1323 2191 CM091768.1 scaffold1004 100.0 True fake: not a misassembly (possible transposable element) 4131305 4145021 16089 2350 CM091768.1 scaffold1004 99.81 True local misassembly 4129410 4131146 20112 18376 CM091768.1 scaffold1004 99.54 True CONTIG scaffold1004 20112 correct 4351523 4353396 1 1874 CM091768.1 scaffold1007 98.93 True unknown 9083272 9085470 9615 11816 CM091760.1 scaffold1007 96.82 True unknown CONTIG scaffold1007 12827 mis_unaligned 9411 10248 870 1 CM091760.1 scaffold1009 98.74 True CONTIG scaffold1009 870 correct CONTIG scaffold1008 717 unaligned 212529 221660 9474 1 CM091753.1 scaffold1011 98.97 True CONTIG scaffold1011 9474 correct 8881252 8884498 3293 1 CM091767.1 scaffold1012 98.96 True CONTIG scaffold1012 3293 correct 2043267 2044144 879 1 CM091764.1 scaffold1010 99.77 True fake: scaffold gap size wrong estimation (local) 2036914 2042719 7134 1325 CM091764.1 scaffold1010 99.85 True fake: scaffold gap size wrong estimation (local) 2031927 2036290 12407 8046 CM091764.1 scaffold1010 99.89 True fake: scaffold gap size wrong estimation (local) 2022888 2032069 22714 13336 CM091764.1 scaffold1010 97.23 True CONTIG scaffold1010 25283 correct CONTIG scaffold1014 358 unaligned CONTIG scaffold1015 930 unaligned CONTIG scaffold1013 4367 unaligned CONTIG scaffold1017 385 unaligned 2783025 2830471 47913 276 CM091751.1 scaffold975 98.75 True fake: scaffold gap size wrong estimation (local) 2778291 2780770 52812 50333 CM091751.1 scaffold975 99.31 True local misassembly 2776799 2777349 54308 53758 CM091751.1 scaffold975 99.27 True indel: indel (<= 5bp) 2776121 2776797 54985 54309 CM091751.1 scaffold975 100.0 True indel: indel (<= 5bp) 2775153 2775735 55955 55373 CM091751.1 scaffold975 99.83 True indel: indel (<= 5bp) 2774068 2775152 57041 55957 CM091751.1 scaffold975 99.45 True indel: indel (<= 5bp) 2773445 2774066 57663 57042 CM091751.1 scaffold975 99.52 True indel: indel (<= 5bp) 2772789 2773443 58318 57664 CM091751.1 scaffold975 98.02 True local misassembly 2755410 2770109 75128 60495 CM091751.1 scaffold975 97.95 True indel: indel (> 5bp) 2747052 2755393 83559 75173 CM091751.1 scaffold975 98.3 True local misassembly 2735816 2747014 95401 83828 CM091751.1 scaffold975 99.34 True indel: indel (> 5bp) 2732321 2735768 98934 95483 CM091751.1 scaffold975 99.54 True fake: scaffold gap size wrong estimation (local) 2730305 2732316 101580 99569 CM091751.1 scaffold975 99.11 True indel: indel (> 5bp) 2725894 2730244 106037 101677 CM091751.1 scaffold975 99.27 True local misassembly 2670566 2725405 161758 106542 CM091751.1 scaffold975 97.4 True indel: indel (> 5bp) 2651969 2670547 180562 161814 CM091751.1 scaffold975 96.74 True indel: indel (<= 5bp) 2601013 2651857 232014 180673 CM091751.1 scaffold975 97.81 True fake: scaffold gap size wrong estimation (local) 2543450 2600856 290371 232367 CM091751.1 scaffold975 98.29 True fake: scaffold gap size wrong estimation (local) 2535725 2540454 298411 293649 CM091751.1 scaffold975 98.66 True indel: indel (<= 5bp) 2513205 2535661 320682 298472 CM091751.1 scaffold975 98.49 True fake: scaffold gap size wrong estimation (local) 2510192 2510775 322775 322192 CM091751.1 scaffold975 100.0 True indel: indel (<= 5bp) 2509394 2510191 323574 322777 CM091751.1 scaffold975 99.0 True local misassembly 2507693 2508237 324789 324245 CM091751.1 scaffold975 100.0 True indel: stretch of mismatches 2439414 2507313 393347 325169 CM091751.1 scaffold975 98.34 True local misassembly 2434141 2438905 398288 393558 CM091751.1 scaffold975 98.72 True indel: indel (> 5bp) 2432102 2434047 400382 398408 CM091751.1 scaffold975 97.93 True indel: indel (> 5bp) 2402704 2432004 429780 400493 CM091751.1 scaffold975 99.19 True CONTIG scaffold975 430219 correct 2913166 2922603 1 9490 CM091752.1 scaffold1019 99.21 True local misassembly 2922964 2924176 9983 11195 CM091752.1 scaffold1019 99.92 True fake: scaffold gap size wrong estimation (local) 2924006 2925288 12105 13389 CM091752.1 scaffold1019 99.69 True CONTIG scaffold1019 13389 correct 11829584 11830253 1 669 CM091758.1 scaffold937 98.66 True fake: scaffold gap size wrong estimation (local) 11831561 11990831 2622 164995 CM091758.1 scaffold937 99.73 True local misassembly 11991014 12456023 165056 635469 CM091758.1 scaffold937 99.52 True indel: indel (> 5bp) 12456307 12786400 635747 968456 CM091758.1 scaffold937 99.57 True local misassembly 12785537 12786796 968457 969716 CM091758.1 scaffold937 99.92 True local misassembly 12785683 12787164 969736 971216 CM091758.1 scaffold937 99.8 True local misassembly 12786073 12786945 971217 972090 CM091758.1 scaffold937 99.66 True fake: scaffold gap size wrong estimation (local) 12787781 12790315 973766 976300 CM091758.1 scaffold937 100.0 True indel: indel (<= 5bp) 12790813 12794709 976796 980692 CM091758.1 scaffold937 100.0 True local misassembly 12795589 12796655 980996 982062 CM091758.1 scaffold937 100.0 True CONTIG scaffold937 982458 correct CONTIG scaffold1021 427 unaligned CONTIG scaffold1018 1171 unaligned CONTIG scaffold1023 448 unaligned CONTIG scaffold1024 378 unaligned CONTIG scaffold1020 458 unaligned CONTIG scaffold1026 464 unaligned CONTIG scaffold1025 694 unaligned CONTIG scaffold1028 396 unaligned CONTIG scaffold1016 8691 unaligned 18567631 18581004 13164 1 CM091751.1 scaffold1029 96.41 True fake: scaffold gap size wrong estimation (local) 18564128 18567447 16677 13368 CM091751.1 scaffold1029 97.81 True CONTIG scaffold1029 20172 correct CONTIG scaffold1027 287 unaligned CONTIG scaffold1032 440 unaligned CONTIG scaffold1030 388 unaligned 16473584 16475176 1593 1 CM091752.1 scaffold1031 99.56 True fake: scaffold gap size wrong estimation (local) 16468760 16473024 6662 2399 CM091752.1 scaffold1031 98.69 True CONTIG scaffold1031 7040 correct 4313944 4316169 3594 1 CM091754.1 scaffold1035 98.41 True fake: scaffold gap size wrong estimation (local) 4312229 4313791 5331 3769 CM091754.1 scaffold1035 100.0 True fake: scaffold gap size wrong estimation (local) 4307150 4311715 10604 5856 CM091754.1 scaffold1035 96.41 True CONTIG scaffold1035 10604 correct CONTIG scaffold1036 448 unaligned CONTIG scaffold1037 492 unaligned 12213958 12219768 5833 1 CM091759.1 scaffold1038 99.35 True fake: scaffold gap size wrong estimation (local) 12176745 12212796 43795 7606 CM091759.1 scaffold1038 99.08 True local misassembly 12172995 12177504 48306 43796 CM091759.1 scaffold1038 99.34 True CONTIG scaffold1038 48306 correct 3669293 3670562 1430 161 CM091768.1 scaffold1039 98.82 True local misassembly 3668880 3670636 3194 1431 CM091768.1 scaffold1039 99.15 True local misassembly 3667920 3669497 4816 3232 CM091768.1 scaffold1039 98.86 True fake: scaffold gap size wrong estimation (local) 3665191 3668612 8301 4848 CM091768.1 scaffold1039 98.95 True local misassembly 3665684 3666305 8930 8309 CM091768.1 scaffold1039 99.04 True local misassembly 3664200 3665055 10652 9797 CM091768.1 scaffold1039 98.95 True local misassembly 3662188 3664828 14401 11649 CM091768.1 scaffold1039 95.57 True CONTIG scaffold1039 14458 correct 9371854 9372594 766 1 CM091752.1 scaffold1040 95.44 True CONTIG scaffold1040 766 correct 1519430 1528397 701 9679 CM091764.1 scaffold1041 99.74 True CONTIG scaffold1041 9679 correct CONTIG scaffold1042 1543 unaligned CONTIG scaffold1034 1140 unaligned CONTIG scaffold1044 363 unaligned CONTIG scaffold1045 409 unaligned 15439259 15442337 1 3155 CM091757.1 scaffold1046 95.24 True local misassembly 15442085 15442878 3855 4648 CM091757.1 scaffold1046 98.74 True indel: indel (> 5bp) 15442879 15443680 4661 5462 CM091757.1 scaffold1046 100.0 True fake: scaffold gap size wrong estimation (local) 15443839 15445580 6296 8037 CM091757.1 scaffold1046 99.89 True CONTIG scaffold1046 8037 correct 7221377 7222033 1065 409 CM091752.1 scaffold1047 98.02 True unknown 14442342 14443328 6524 7510 CM091752.1 scaffold1047 98.68 True unknown CONTIG scaffold1047 9431 mis_unaligned CONTIG scaffold1048 1076 unaligned 4991138 4992353 1 1217 CM091768.1 scaffold1049 99.84 True local misassembly 4991922 4996368 1338 5783 CM091768.1 scaffold1049 99.93 True indel: indel (> 5bp) 4996436 4999396 5879 8779 CM091768.1 scaffold1049 97.84 True CONTIG scaffold1049 8904 correct CONTIG scaffold1050 3626 unaligned 13475361 13481847 6577 1 CM091758.1 scaffold1051 98.37 True CONTIG scaffold1051 6577 correct CONTIG scaffold1052 398 unaligned CONTIG scaffold1054 1270 unaligned CONTIG scaffold1055 402 unaligned 6559646 6560610 983 1 CM091765.1 scaffold1043 97.26 True fake: scaffold gap size wrong estimation (local) 6547595 6559044 14416 2130 CM091765.1 scaffold1043 99.21 True indel: indel (<= 5bp) 6482252 6547544 79788 14463 CM091765.1 scaffold1043 99.56 True indel: indel (> 5bp) 6187629 6482048 376680 79947 CM091765.1 scaffold1043 99.35 True fake: scaffold gap size wrong estimation (local) 6153077 6187439 411541 377017 CM091765.1 scaffold1043 97.47 True local misassembly 5997733 6154657 571015 411555 CM091765.1 scaffold1043 99.49 True indel: indel (<= 5bp) 5910295 5997671 660003 571078 CM091765.1 scaffold1043 99.56 True CONTIG scaffold1043 660008 correct CONTIG scaffold1057 446 unaligned CONTIG scaffold1058 407 unaligned 1911273 1912204 953 8 CM091764.1 scaffold1059 96.83 True CONTIG scaffold1059 953 correct CONTIG scaffold1060 447 unaligned CONTIG scaffold1061 585 unaligned 20861806 20864104 2287 2 CM091751.1 scaffold1062 96.77 True fake: scaffold gap size wrong estimation (local) 20860989 20861741 4649 3897 CM091751.1 scaffold1062 98.94 True CONTIG scaffold1062 5165 correct 16345494 16347123 1 1639 CM091752.1 scaffold1063 98.9 True CONTIG scaffold1063 1639 correct CONTIG scaffold1064 392 unaligned CONTIG scaffold1066 923 unaligned 4937731 4938748 1018 1 CM091768.1 scaffold1067 100.0 True CONTIG scaffold1067 1018 correct CONTIG scaffold1068 371 unaligned CONTIG scaffold1069 398 unaligned 11293692 11295266 1 1575 CM091765.1 scaffold1070 99.56 True fake: scaffold gap size wrong estimation (local) 11296684 11303608 3146 10091 CM091765.1 scaffold1070 99.28 True fake: scaffold gap size wrong estimation (local) 11303770 11315383 10274 22231 CM091765.1 scaffold1070 97.42 True indel: indel (> 5bp) 11315518 11335236 22353 42752 CM091765.1 scaffold1070 99.28 True indel: indel (> 5bp) 11335360 11342694 42885 50267 CM091765.1 scaffold1070 99.04 True CONTIG scaffold1070 50267 correct CONTIG scaffold1071 892 unaligned 1935841 1944827 1 9098 CM091759.1 scaffold1056 98.04 True CONTIG scaffold1056 9263 correct CONTIG scaffold1073 365 unaligned 10115072 10115752 9293 8613 CM091752.1 scaffold1072 98.83 True CONTIG scaffold1072 10748 correct_unaligned CONTIG scaffold1075 634 unaligned 14260935 14263917 3073 1 CM091752.1 scaffold1076 95.71 True translocation 4339706 4340770 4138 3074 CM091754.1 scaffold1076 95.07 True CONTIG scaffold1076 4138 misassembled CONTIG scaffold1077 388 unaligned 97409 101361 1 4040 CM091764.1 scaffold1074 96.16 True fake: scaffold gap size wrong estimation (local) 102716 103402 4744 5430 CM091764.1 scaffold1074 99.71 True local misassembly 101947 105876 5738 9687 CM091764.1 scaffold1074 96.12 True CONTIG scaffold1074 9687 correct 4410427 4411236 802 1 CM091752.1 scaffold1079 98.52 True CONTIG scaffold1079 802 correct CONTIG scaffold1078 337 unaligned 13058912 13059486 577 1 CM091755.1 scaffold1081 97.75 True fake: scaffold gap size wrong estimation (local) 13054609 13057018 4475 2067 CM091755.1 scaffold1081 99.83 True CONTIG scaffold1081 4475 correct CONTIG scaffold1080 509 unaligned CONTIG scaffold1083 365 unaligned CONTIG scaffold1084 315 unaligned CONTIG scaffold1085 328 unaligned CONTIG scaffold1082 5541 unaligned 6636878 6640109 3318 1 CM091768.1 scaffold1087 95.47 True fake: scaffold gap size wrong estimation (local) 6635019 6636719 5272 3572 CM091768.1 scaffold1087 98.41 True CONTIG scaffold1087 5272 correct CONTIG scaffold1088 612 unaligned CONTIG scaffold1086 705 unaligned CONTIG scaffold1089 3986 unaligned 249270 253161 3897 1 CM091752.1 scaffold1090 99.21 True fake: scaffold gap size wrong estimation (local) 241361 249076 11940 4102 CM091752.1 scaffold1090 96.81 True indel: indel (> 5bp) 227372 241227 26419 12115 CM091752.1 scaffold1090 95.46 True local misassembly 223336 225312 30403 28429 CM091752.1 scaffold1090 99.39 True CONTIG scaffold1090 30403 correct CONTIG scaffold1092 282 unaligned CONTIG scaffold1091 468 unaligned CONTIG scaffold1094 847 unaligned CONTIG scaffold1093 3124 unaligned 1411819 1412925 1142 1 CM091755.1 scaffold1096 95.53 True CONTIG scaffold1096 1142 correct 78882 81092 2210 1 CM091764.1 scaffold1095 99.82 True fake: scaffold gap size wrong estimation (local) 77671 78878 4279 3049 CM091764.1 scaffold1095 97.97 True local misassembly 77030 78750 5997 4280 CM091764.1 scaffold1095 99.65 True indel: indel (> 5bp) 75661 76694 7431 6398 CM091764.1 scaffold1095 98.07 True local misassembly 74092 75580 9206 7696 CM091764.1 scaffold1095 95.0 True CONTIG scaffold1095 10148 correct 7820550 7825076 1 4536 CM091767.1 scaffold1097 99.6 True fake: scaffold gap size wrong estimation (local) 7825421 7837847 5119 17667 CM091767.1 scaffold1097 99.03 True CONTIG scaffold1097 17667 correct CONTIG scaffold1098 603 unaligned 2851389 2852322 481 1414 CM091762.1 scaffold1100 99.89 True CONTIG scaffold1100 1414 correct CONTIG scaffold1099 1660 unaligned CONTIG scaffold1101 422 unaligned CONTIG scaffold1102 419 unaligned CONTIG scaffold1104 593 unaligned CONTIG scaffold1105 462 unaligned CONTIG scaffold1103 906 unaligned 16716231 16717355 1125 1 CM091752.1 scaffold1107 99.56 True CONTIG scaffold1107 1125 correct 20632 21410 10764 9986 CM091753.1 scaffold1106 97.56 True unknown 8330846 8331907 13250 14308 CM091767.1 scaffold1106 95.03 True unknown CONTIG scaffold1106 14308 mis_unaligned CONTIG scaffold1108 9269 unaligned 16362256 16362773 1 518 CM091752.1 scaffold1110 100.0 True fake: scaffold gap size wrong estimation (local) 16362923 16363791 676 1581 CM091752.1 scaffold1110 95.81 True CONTIG scaffold1110 1581 correct 8483782 8486785 1 3005 CM091767.1 scaffold1111 99.97 True CONTIG scaffold1111 3005 correct 11625065 11625572 1 523 CM091753.1 scaffold1112 96.56 True CONTIG scaffold1112 523 correct 15578197 15579608 1 1419 CM091752.1 scaffold1113 98.87 True CONTIG scaffold1113 1688 correct 13422526 13423842 1945 630 CM091758.1 scaffold1114 98.71 True local misassembly 13399503 13422398 25077 2165 CM091758.1 scaffold1114 99.85 True CONTIG scaffold1114 25482 correct 10990497 11057787 1 67268 CM091764.1 scaffold999 99.47 True local misassembly 11056470 11118855 67269 130705 CM091764.1 scaffold999 99.45 True indel: indel (> 5bp) 11118867 11131510 130747 143207 CM091764.1 scaffold999 97.98 True indel: indel (<= 5bp) 11131539 11188227 143241 204537 CM091764.1 scaffold999 98.1 True fake: scaffold gap size wrong estimation (local) 11188491 11307156 205571 329016 CM091764.1 scaffold999 99.06 True fake: scaffold gap size wrong estimation (local) 11307315 11423366 329507 447908 CM091764.1 scaffold999 99.36 True fake: scaffold gap size wrong estimation (local) 11423781 11458370 448865 484269 CM091764.1 scaffold999 98.85 True fake: scaffold gap size wrong estimation (local) 11459503 11489365 485684 516421 CM091764.1 scaffold999 99.67 True local misassembly 11487940 11640966 516422 672330 CM091764.1 scaffold999 99.49 True indel: indel (> 5bp) 11641154 11643862 672535 675243 CM091764.1 scaffold999 99.89 True indel: indel (<= 5bp) 11643863 11645171 675245 676553 CM091764.1 scaffold999 99.92 True indel: indel (<= 5bp) 11645174 11647414 676554 678794 CM091764.1 scaffold999 99.91 True indel: indel (<= 5bp) 11647416 11647994 678795 679373 CM091764.1 scaffold999 100.0 True indel: indel (<= 5bp) 11647995 11648785 679375 680165 CM091764.1 scaffold999 100.0 True indel: indel (<= 5bp) 11648790 11651508 680166 682884 CM091764.1 scaffold999 99.71 True indel: indel (> 5bp) 11651509 11652122 682891 683504 CM091764.1 scaffold999 99.51 True indel: indel (<= 5bp) 11652124 11655287 683505 686668 CM091764.1 scaffold999 99.72 True indel: indel (<= 5bp) 11655288 11656422 686670 687804 CM091764.1 scaffold999 99.91 True indel: indel (> 5bp) 11656809 11658859 688177 690227 CM091764.1 scaffold999 99.66 True local misassembly 11659757 11661935 691131 693309 CM091764.1 scaffold999 99.5 True indel: indel (<= 5bp) 11661936 11665648 693311 697023 CM091764.1 scaffold999 99.65 True indel: indel (> 5bp) 11665665 11666745 697033 698113 CM091764.1 scaffold999 99.91 True indel: indel (<= 5bp) 11666746 11668172 698115 699541 CM091764.1 scaffold999 99.86 True indel: indel (> 5bp) 11668200 11668905 699542 700247 CM091764.1 scaffold999 99.86 True local misassembly 11672877 11674863 700525 702511 CM091764.1 scaffold999 99.75 True indel: indel (<= 5bp) 11674864 11676615 702516 704267 CM091764.1 scaffold999 99.54 True indel: indel (<= 5bp) 11676616 11677617 704271 705272 CM091764.1 scaffold999 99.7 True indel: indel (<= 5bp) 11678095 11680493 705751 708149 CM091764.1 scaffold999 99.75 True indel: indel (> 5bp) 11680494 11681528 708170 709204 CM091764.1 scaffold999 99.61 True indel: indel (> 5bp) 11681529 11683144 709211 710826 CM091764.1 scaffold999 99.44 True indel: stretch of mismatches 11683236 11685255 710918 712937 CM091764.1 scaffold999 99.9 True indel: indel (<= 5bp) 11685257 11685798 712938 713479 CM091764.1 scaffold999 99.45 True local misassembly 11686411 11699768 715589 728953 CM091764.1 scaffold999 99.74 True relocation, scaffold gap is present, inconsistency = -289269 11706478 11728329 1024932 1047780 CM091764.1 scaffold999 99.48 True fake: scaffold gap size wrong estimation (local) 11728463 11733322 1048555 1053409 CM091764.1 scaffold999 99.77 True translocation, scaffold gap is present 18520661 18521244 1228118 1228709 CM091753.1 scaffold999 96.11 True CONTIG scaffold999 1228709 misassembled CONTIG scaffold1116 246 unaligned 4950633 4951550 1 918 CM091768.1 scaffold1115 100.0 True fake: scaffold gap size wrong estimation (local) 4953042 4965461 3147 15624 CM091768.1 scaffold1115 99.46 True CONTIG scaffold1115 15751 correct CONTIG scaffold1118 16227 unaligned CONTIG scaffold1119 427 unaligned 10196227 10634912 445545 632 CM091760.1 scaffold1033 98.99 True local misassembly 10107630 10197647 535966 445546 CM091760.1 scaffold1033 99.24 True CONTIG scaffold1033 535966 correct CONTIG scaffold1121 351 unaligned CONTIG scaffold1117 10594 unaligned 9208020 9208712 1 693 CM091763.1 scaffold1123 100.0 True local misassembly 9207979 9219695 694 12267 CM091763.1 scaffold1123 97.1 True local misassembly 9219437 9226446 12531 19803 CM091763.1 scaffold1123 95.86 True fake: scaffold gap size wrong estimation (local) 9227790 9229592 21867 23668 CM091763.1 scaffold1123 99.83 True CONTIG scaffold1123 23668 correct CONTIG scaffold1124 1158 unaligned 4314510 4315479 56 1014 CM091752.1 scaffold1125 97.92 True CONTIG scaffold1125 1014 correct CONTIG scaffold1126 423 unaligned CONTIG scaffold1127 304 unaligned 15353534 15462725 109548 1 CM091751.1 scaffold974 99.65 True fake: scaffold gap size wrong estimation (local) 15303370 15353396 162086 110260 CM091751.1 scaffold974 97.93 True local misassembly 15184139 15303324 283177 162343 CM091751.1 scaffold974 98.92 True fake: scaffold gap size wrong estimation (local) 15166070 15183977 302270 284248 CM091751.1 scaffold974 99.5 True fake: scaffold gap size wrong estimation (local) 15159911 15165956 309127 303082 CM091751.1 scaffold974 99.79 True fake: scaffold gap size wrong estimation (local) 15155780 15159829 313731 309220 CM091751.1 scaffold974 99.27 True fake: scaffold gap size wrong estimation (local) 15152244 15155530 317476 314205 CM091751.1 scaffold974 99.21 True fake: scaffold gap size wrong estimation (local) 15136893 15151570 333270 318510 CM091751.1 scaffold974 99.58 True fake: scaffold gap size wrong estimation (local) 15134030 15135797 336534 334745 CM091751.1 scaffold974 99.77 True fake: scaffold gap size wrong estimation (local) 15127472 15133944 343145 336640 CM091751.1 scaffold974 99.63 True fake: scaffold gap size wrong estimation (local) 15121746 15127328 349070 343430 CM091751.1 scaffold974 99.37 True fake: scaffold gap size wrong estimation (local) 15112227 15121246 360003 350780 CM091751.1 scaffold974 99.12 True local misassembly 15110695 15112162 362219 360751 CM091751.1 scaffold974 99.86 True fake: scaffold gap size wrong estimation (local) 15106789 15110638 366282 362279 CM091751.1 scaffold974 98.52 True indel: indel (> 5bp) 15104316 15106763 368739 366328 CM091751.1 scaffold974 97.72 True fake: scaffold gap size wrong estimation (local) 15083312 15103966 391368 369351 CM091751.1 scaffold974 98.8 True fake: scaffold gap size wrong estimation (local) 15049896 15082880 427135 392319 CM091751.1 scaffold974 98.73 True fake: scaffold gap size wrong estimation (local) 15033737 15049765 444516 427314 CM091751.1 scaffold974 96.48 True fake: scaffold gap size wrong estimation (local) 15015236 15033652 463604 444737 CM091751.1 scaffold974 97.79 True fake: scaffold gap size wrong estimation (local) 15013336 15015499 466730 464566 CM091751.1 scaffold974 99.58 True indel: indel (> 5bp) 15003036 15013285 477404 466806 CM091751.1 scaffold974 98.94 True fake: scaffold gap size wrong estimation (local) 14994978 15002938 485750 477487 CM091751.1 scaffold974 99.02 True fake: scaffold gap size wrong estimation (local) 14982220 14994629 499005 486293 CM091751.1 scaffold974 96.84 True local misassembly 14979394 14980116 501520 500798 CM091751.1 scaffold974 98.76 True fake: scaffold gap size wrong estimation (local) 14977453 14978227 504489 503715 CM091751.1 scaffold974 100.0 True indel: indel (<= 5bp) 14976703 14977451 505238 504490 CM091751.1 scaffold974 99.73 True indel: indel (<= 5bp) 14975536 14976658 506402 505280 CM091751.1 scaffold974 99.91 True fake: scaffold gap size wrong estimation (local) 14973036 14974245 509663 508454 CM091751.1 scaffold974 99.75 True fake: scaffold gap size wrong estimation (local) 14972448 14973035 510356 509769 CM091751.1 scaffold974 99.83 True CONTIG scaffold974 510356 correct CONTIG scaffold1129 350 unaligned CONTIG scaffold1128 1681 unaligned CONTIG scaffold1130 402 unaligned CONTIG scaffold1131 675 unaligned 2133903 2134713 840 1 CM091764.1 scaffold1133 96.31 True fake: scaffold gap size wrong estimation (local) 2130589 2132840 4328 2073 CM091764.1 scaffold1133 99.78 True CONTIG scaffold1133 6428 correct CONTIG scaffold1134 323 unaligned 890275 892824 1 2603 CM091764.1 scaffold1135 97.35 True CONTIG scaffold1135 2603 correct CONTIG scaffold1136 8066 unaligned CONTIG scaffold1132 1311 unaligned CONTIG scaffold1138 392 unaligned 796861 834301 37307 1 CM091768.1 scaffold998 99.2 True indel: indel (> 5bp) 777202 796384 56857 37777 CM091768.1 scaffold998 98.78 True local misassembly 687326 776723 147838 57060 CM091768.1 scaffold998 99.05 True local misassembly 466238 686999 373539 148816 CM091768.1 scaffold998 98.41 True local misassembly 449342 467180 392357 373540 CM091768.1 scaffold998 96.99 True indel: indel (> 5bp) 431244 449194 411249 392526 CM091768.1 scaffold998 99.3 True fake: scaffold gap size wrong estimation (local) 199108 430926 644923 411706 CM091768.1 scaffold998 99.44 True relocation, inconsistency = 31644 52169 167215 759585 645172 CM091768.1 scaffold998 98.01 True CONTIG scaffold998 759585 misassembled CONTIG scaffold1140 483 unaligned 895560 969196 76865 1461 CM091757.1 scaffold814 97.93 True local misassembly 894065 894756 79051 78360 CM091757.1 scaffold814 99.71 True local misassembly 891911 893587 81857 80181 CM091757.1 scaffold814 99.7 True indel: indel (<= 5bp) 891325 891909 82442 81858 CM091757.1 scaffold814 100.0 True indel: indel (<= 5bp) 890215 891170 83555 82600 CM091757.1 scaffold814 99.69 True indel: indel (<= 5bp) 885810 889735 87962 84037 CM091757.1 scaffold814 99.95 True indel: indel (<= 5bp) 885137 885809 88637 87965 CM091757.1 scaffold814 99.85 True indel: indel (<= 5bp) 884555 885057 89214 88712 CM091757.1 scaffold814 99.8 True indel: indel (<= 5bp) 882787 884554 90983 89216 CM091757.1 scaffold814 99.04 True fake: scaffold gap size wrong estimation (local) 881938 882486 91984 91436 CM091757.1 scaffold814 99.64 True indel: indel (<= 5bp) 881277 881937 92646 91986 CM091757.1 scaffold814 99.85 True indel: indel (> 5bp) 879751 880960 94151 92942 CM091757.1 scaffold814 99.5 True indel: indel (<= 5bp) 877979 879747 95920 94152 CM091757.1 scaffold814 99.89 True indel: indel (<= 5bp) 876976 877978 96924 95922 CM091757.1 scaffold814 100.0 True indel: indel (<= 5bp) 875051 876973 98847 96925 CM091757.1 scaffold814 99.84 True indel: indel (<= 5bp) 874275 875048 99621 98848 CM091757.1 scaffold814 100.0 True local misassembly 871092 872233 103345 102204 CM091757.1 scaffold814 99.91 True indel: indel (<= 5bp) 869366 870898 105068 103536 CM091757.1 scaffold814 99.93 True local misassembly 867893 869365 106990 105518 CM091757.1 scaffold814 99.93 True indel: indel (<= 5bp) 866889 867892 107995 106992 CM091757.1 scaffold814 99.8 True indel: indel (<= 5bp) 866026 866888 108859 107997 CM091757.1 scaffold814 99.54 True fake: scaffold gap size wrong estimation (local) 864634 865800 110524 109358 CM091757.1 scaffold814 99.57 True indel: indel (> 5bp) 862256 864504 112913 110665 CM091757.1 scaffold814 99.78 True fake: scaffold gap size wrong estimation (local) 699194 861968 280643 113750 CM091757.1 scaffold814 98.96 True fake: scaffold gap size wrong estimation (local) 501864 699055 483066 281651 CM091757.1 scaffold814 99.26 True fake: scaffold gap size wrong estimation (local) 422450 501746 565662 483360 CM091757.1 scaffold814 98.94 True local misassembly 344952 423843 645508 565663 CM091757.1 scaffold814 98.61 True indel: indel (<= 5bp) 343614 344916 646849 645539 CM091757.1 scaffold814 99.92 True indel: indel (<= 5bp) 340872 343502 649628 646963 CM091757.1 scaffold814 98.12 True fake: scaffold gap size wrong estimation (local) 339045 340559 651463 649949 CM091757.1 scaffold814 99.93 True fake: scaffold gap size wrong estimation (local) 335861 338928 654671 651572 CM091757.1 scaffold814 99.74 True fake: scaffold gap size wrong estimation (local) 332145 335243 658576 655469 CM091757.1 scaffold814 99.74 True fake: scaffold gap size wrong estimation (local) 276799 332010 715062 658886 CM091757.1 scaffold814 98.55 True fake: scaffold gap size wrong estimation (local) 275377 275887 716574 716064 CM091757.1 scaffold814 99.8 True indel: indel (> 5bp) 274505 275024 717504 716985 CM091757.1 scaffold814 100.0 True fake: scaffold gap size wrong estimation (local) 269565 274375 722460 717656 CM091757.1 scaffold814 99.27 True fake: scaffold gap size wrong estimation (local) 262445 269274 729704 722835 CM091757.1 scaffold814 99.77 True indel: indel (> 5bp) 260541 262396 732310 729760 CM091757.1 scaffold814 99.95 True fake: scaffold gap size wrong estimation (local) 251864 260157 741118 732818 CM091757.1 scaffold814 99.77 True fake: scaffold gap size wrong estimation (local) 249859 250973 743368 742254 CM091757.1 scaffold814 100.0 True indel: indel (<= 5bp) 248545 249857 744681 743369 CM091757.1 scaffold814 99.62 True indel: indel (<= 5bp) 247347 248544 745880 744683 CM091757.1 scaffold814 99.83 True indel: indel (> 5bp) 246136 247192 747102 746046 CM091757.1 scaffold814 100.0 True fake: scaffold gap size wrong estimation (local) 243760 244662 750171 749269 CM091757.1 scaffold814 99.78 True fake: scaffold gap size wrong estimation (local) 191430 243416 804282 750521 CM091757.1 scaffold814 98.68 True fake: scaffold gap size wrong estimation (local) 176189 190905 821101 805492 CM091757.1 scaffold814 96.25 True fake: scaffold gap size wrong estimation (local) 161316 175982 837194 821575 CM091757.1 scaffold814 96.02 True fake: scaffold gap size wrong estimation (local) 137609 161191 863525 837489 CM091757.1 scaffold814 96.36 True fake: scaffold gap size wrong estimation (local) 64471 137306 940115 864085 CM091757.1 scaffold814 99.55 True local misassembly 55694 64419 949327 940604 CM091757.1 scaffold814 99.73 True fake: scaffold gap size wrong estimation (local) 30873 55607 976865 950162 CM091757.1 scaffold814 98.42 True fake: scaffold gap size wrong estimation (local) 15875 30431 993014 977531 CM091757.1 scaffold814 98.96 True CONTIG scaffold814 994455 correct 11837127 11838960 5061 3228 CM091763.1 scaffold1022 99.89 True local misassembly 11809518 11837877 33448 5067 CM091763.1 scaffold1022 99.54 True local misassembly 11745489 11809435 99693 34221 CM091763.1 scaffold1022 97.09 True fake: scaffold gap size wrong estimation (local) 11743357 11745020 102446 100783 CM091763.1 scaffold1022 100.0 True CONTIG scaffold1022 102446 correct 14736 16148 1 1433 CM091756.1 scaffold1143 98.32 True fake: scaffold gap size wrong estimation (local) 17442 18166 2695 3419 CM091756.1 scaffold1143 99.31 True CONTIG scaffold1143 3419 correct CONTIG scaffold1142 459 unaligned 4315704 4316227 540 1 CM091752.1 scaffold1145 95.19 True CONTIG scaffold1145 540 correct 17308100 17308725 1 645 CM091752.1 scaffold1146 95.19 True CONTIG scaffold1146 929 correct CONTIG scaffold1147 1009 unaligned CONTIG scaffold1148 426 unaligned CONTIG scaffold1149 1288 unaligned CONTIG scaffold1150 1605 unaligned CONTIG scaffold1151 936 unaligned CONTIG scaffold1152 402 unaligned CONTIG scaffold1153 452 unaligned CONTIG scaffold1154 932 unaligned CONTIG scaffold1155 406 unaligned CONTIG scaffold1156 354 unaligned CONTIG scaffold1157 574 unaligned 15089584 15147203 1 58720 CM091754.1 scaffold1144 98.74 True fake: scaffold gap size wrong estimation (local) 15147293 15217376 58831 129157 CM091754.1 scaffold1144 99.8 True fake: scaffold gap size wrong estimation (local) 15217459 15231021 129275 143244 CM091754.1 scaffold1144 96.95 True fake: scaffold gap size wrong estimation (local) 15231113 15250625 143872 164222 CM091754.1 scaffold1144 99.62 True fake: scaffold gap size wrong estimation (local) 15250755 15304926 164818 220176 CM091754.1 scaffold1144 99.71 True fake: scaffold gap size wrong estimation (local) 15305234 15307910 221019 223696 CM091754.1 scaffold1144 99.85 True fake: scaffold gap size wrong estimation (local) 15309462 15319722 225870 236999 CM091754.1 scaffold1144 97.65 True CONTIG scaffold1144 236999 correct CONTIG scaffold1158 864 unaligned 16308926 16310116 1 1201 CM091752.1 scaffold1160 96.25 True CONTIG scaffold1160 1201 correct CONTIG scaffold1159 623 unaligned 16094318 16106265 12384 1 CM091758.1 scaffold1120 96.38 True relocation, inconsistency = 27238 16062286 16067079 17307 12385 CM091758.1 scaffold1120 97.29 True fake: scaffold gap size wrong estimation (local) 15989702 16061456 91224 18646 CM091758.1 scaffold1120 98.65 True indel: indel (> 5bp) 15967652 15989616 113286 91328 CM091758.1 scaffold1120 99.96 True fake: scaffold gap size wrong estimation (local) 15902655 15967349 178690 113875 CM091758.1 scaffold1120 99.52 True local misassembly 15865525 15902476 216331 179374 CM091758.1 scaffold1120 99.67 True CONTIG scaffold1120 216331 misassembled 2896247 2898680 3127 694 CM091752.1 scaffold1163 99.47 True CONTIG scaffold1163 3285 correct CONTIG scaffold1164 436 unaligned 4621039 4630696 1 9680 CM091754.1 scaffold1162 99.27 True CONTIG scaffold1162 10091 correct 9036047 9037145 1 1120 CM091767.1 scaffold1166 97.59 True CONTIG scaffold1166 1120 correct CONTIG scaffold1165 829 unaligned CONTIG scaffold1168 425 unaligned 4372305 4384429 1 12185 CM091768.1 scaffold1167 98.93 True fake: scaffold gap size wrong estimation (local) 4384666 4400645 12711 28740 CM091768.1 scaffold1167 99.55 True CONTIG scaffold1167 28883 correct 14341326 14348582 7616 520 CM091758.1 scaffold1169 96.46 True indel: indel (> 5bp) 14295594 14341275 53421 7700 CM091758.1 scaffold1169 99.18 True CONTIG scaffold1169 53421 correct CONTIG scaffold1171 402 unaligned 15383455 15384015 809 1365 CM091752.1 scaffold1172 97.68 True CONTIG scaffold1172 1365 correct_unaligned 4547161 4550393 3217 1 CM091768.1 scaffold1173 99.41 True fake: scaffold gap size wrong estimation (local) 4543369 4547298 7786 3811 CM091768.1 scaffold1173 98.72 True CONTIG scaffold1173 7786 correct 6526433 6545598 19958 784 CM091759.1 scaffold1122 98.77 True local misassembly 6493468 6525327 51663 20447 CM091759.1 scaffold1122 96.25 True local misassembly 6477623 6494426 68936 51669 CM091759.1 scaffold1122 96.16 True local misassembly 6455202 6473229 86971 68937 CM091759.1 scaffold1122 99.42 True local misassembly 6429588 6456618 115040 86987 CM091759.1 scaffold1122 98.79 True fake: scaffold gap size wrong estimation (local) 6421124 6429475 123619 115267 CM091759.1 scaffold1122 99.69 True indel: indel (> 5bp) 6401630 6421093 143533 123673 CM091759.1 scaffold1122 99.34 True indel: indel (<= 5bp) 6394374 6401551 150782 143611 CM091759.1 scaffold1122 99.42 True local misassembly 6386380 6394997 159434 150813 CM091759.1 scaffold1122 99.43 True indel: stretch of mismatches 6317425 6386307 228717 159507 CM091759.1 scaffold1122 99.26 True indel: indel (> 5bp) 6295742 6317376 250453 228721 CM091759.1 scaffold1122 98.9 True fake: scaffold gap size wrong estimation (local) 6272266 6295890 275101 251304 CM091759.1 scaffold1122 99.75 True fake: scaffold gap size wrong estimation (local) 6071642 6272165 481957 275519 CM091759.1 scaffold1122 98.95 True local misassembly 6062163 6071192 491171 482132 CM091759.1 scaffold1122 99.17 True CONTIG scaffold1122 491171 correct CONTIG scaffold1174 410 unaligned CONTIG scaffold1176 421 unaligned 11456253 11458145 349 2241 CM091765.1 scaffold1177 100.0 True fake: scaffold gap size wrong estimation (local) 11458227 11462713 2362 6960 CM091765.1 scaffold1177 97.5 True CONTIG scaffold1177 6960 correct CONTIG scaffold1178 360 unaligned 11332322 11333363 1046 1 CM091758.1 scaffold1137 99.52 True fake: scaffold gap size wrong estimation (local) 11166705 11332053 171031 2445 CM091758.1 scaffold1137 98.85 True indel: indel (<= 5bp) 11088238 11166675 248848 171064 CM091758.1 scaffold1137 98.3 True fake: scaffold gap size wrong estimation (local) 11047036 11088123 291366 248972 CM091758.1 scaffold1137 98.75 True indel: indel (> 5bp) 11046162 11046928 292246 291480 CM091758.1 scaffold1137 100.0 True indel: indel (<= 5bp) 11043587 11046161 294822 292248 CM091758.1 scaffold1137 99.88 True indel: indel (<= 5bp) 11041872 11043586 296538 294824 CM091758.1 scaffold1137 99.77 True local misassembly 11036426 11038180 298293 296539 CM091758.1 scaffold1137 99.89 True indel: indel (> 5bp) 11033957 11036425 300770 298302 CM091758.1 scaffold1137 99.92 True local misassembly 11029935 11033476 304815 301274 CM091758.1 scaffold1137 99.8 True indel: indel (<= 5bp) 11027585 11029934 307166 304817 CM091758.1 scaffold1137 99.91 True indel: stretch of mismatches 11023998 11027091 310753 307660 CM091758.1 scaffold1137 99.61 True indel: indel (> 5bp) 11021766 11023997 312991 310760 CM091758.1 scaffold1137 99.82 True indel: stretch of mismatches 11020276 11021709 314481 313048 CM091758.1 scaffold1137 99.51 True indel: indel (> 5bp) 11019709 11020275 315060 314494 CM091758.1 scaffold1137 99.65 True local misassembly 11017849 11019113 316850 315586 CM091758.1 scaffold1137 99.76 True indel: indel (<= 5bp) 11016668 11017848 318032 316852 CM091758.1 scaffold1137 99.49 True indel: indel (<= 5bp) 11016056 11016666 318643 318033 CM091758.1 scaffold1137 99.84 True indel: indel (> 5bp) 11013858 11015753 320853 318958 CM091758.1 scaffold1137 99.74 True indel: indel (<= 5bp) 11010223 11013856 324487 320854 CM091758.1 scaffold1137 99.72 True indel: indel (> 5bp) 11008451 11010222 326268 324497 CM091758.1 scaffold1137 99.38 True indel: indel (<= 5bp) 11001584 11008450 333136 326270 CM091758.1 scaffold1137 99.71 True indel: indel (<= 5bp) 11000620 11001582 334099 333137 CM091758.1 scaffold1137 99.79 True indel: indel (<= 5bp) 10997320 11000148 337401 334573 CM091758.1 scaffold1137 99.72 True indel: indel (<= 5bp) 10996461 10997306 338257 337412 CM091758.1 scaffold1137 99.88 True indel: indel (<= 5bp) 10995681 10996459 339036 338258 CM091758.1 scaffold1137 99.36 True indel: indel (<= 5bp) 10994561 10995679 340155 339037 CM091758.1 scaffold1137 99.82 True indel: indel (<= 5bp) 10993490 10994532 341231 340189 CM091758.1 scaffold1137 99.62 True indel: indel (<= 5bp) 10991890 10993489 342832 341233 CM091758.1 scaffold1137 99.94 True indel: indel (<= 5bp) 10991288 10991889 343438 342837 CM091758.1 scaffold1137 100.0 True local misassembly 10989195 10990619 345528 344104 CM091758.1 scaffold1137 99.65 True indel: indel (> 5bp) 10873842 10988836 462940 345901 CM091758.1 scaffold1137 98.3 True CONTIG scaffold1137 462940 correct 4445254 4448167 2988 1 CM091754.1 scaffold1175 97.12 True fake: not a misassembly (possible transposable element) 6175220 6176020 3789 2989 CM091768.1 scaffold1175 100.0 True fake: not a misassembly (possible transposable element) 4440511 4444963 8254 3790 CM091754.1 scaffold1175 99.6 True fake: scaffold gap size wrong estimation (local) 4434824 4440358 14319 8560 CM091754.1 scaffold1175 95.94 True indel: indel (> 5bp) 4433851 4434744 15275 14382 CM091754.1 scaffold1175 99.55 True local misassembly 4432590 4433558 16353 15374 CM091754.1 scaffold1175 97.06 True inversion 4433176 4433928 16354 17106 CM091754.1 scaffold1175 99.75 True relocation, scaffold gap is present, inconsistency = 47271 4481684 4482824 17591 18735 CM091754.1 scaffold1175 98.69 True indel: indel (> 5bp) 4482971 4483574 18894 19497 CM091754.1 scaffold1175 99.83 True fake: not a misassembly (possible transposable element) 14493646 14494205 20623 20070 CM091756.1 scaffold1175 96.96 True fake: not a misassembly (possible transposable element) 4484250 4486137 20789 22676 CM091754.1 scaffold1175 99.79 True CONTIG scaffold1175 22676 misassembled 8892068 8904396 1 12411 CM091767.1 scaffold1179 99.03 True fake: scaffold gap size wrong estimation (local) 8905101 8909715 13295 18267 CM091767.1 scaffold1179 99.33 True CONTIG scaffold1179 18267 correct CONTIG scaffold1182 347 unaligned CONTIG scaffold1183 374 unaligned CONTIG scaffold1184 387 unaligned 16330617 16332396 9243 7464 CM091752.1 scaffold1180 99.89 True unknown 16329541 16330615 10318 9244 CM091752.1 scaffold1180 100.0 True unknown 16328706 16329539 11152 10319 CM091752.1 scaffold1180 99.88 True unknown CONTIG scaffold1180 11257 mis_unaligned CONTIG scaffold1186 559 unaligned 16316263 16316778 1400 885 CM091752.1 scaffold1185 99.61 True CONTIG scaffold1185 1400 correct_unaligned CONTIG scaffold1188 345 unaligned CONTIG scaffold1189 425 unaligned CONTIG scaffold1181 588 unaligned 803540 804079 1 540 CM091755.1 scaffold1191 98.89 True CONTIG scaffold1191 540 correct 18659524 18660282 981 223 CM091752.1 scaffold1187 97.89 True CONTIG scaffold1187 1391 correct CONTIG scaffold1193 477 unaligned CONTIG scaffold1190 1366 unaligned 1931942 1933036 773 1867 CM091764.1 scaffold1195 99.45 True CONTIG scaffold1195 2109 correct 27827 28381 13 566 CM091768.1 scaffold1192 99.1 True CONTIG scaffold1192 3205 correct_unaligned CONTIG scaffold1194 1307 unaligned CONTIG scaffold1198 423 unaligned CONTIG scaffold1199 337 unaligned CONTIG scaffold1196 738 unaligned 3928416 3930103 1688 1 CM091768.1 scaffold1197 99.41 True local misassembly 3916086 3928830 15120 2082 CM091768.1 scaffold1197 98.15 True fake: scaffold gap size wrong estimation (local) 3910153 3915249 21358 16154 CM091768.1 scaffold1197 99.94 True fake: scaffold gap size wrong estimation (local) 3908156 3909215 23337 22278 CM091768.1 scaffold1197 100.0 True indel: indel (> 5bp) 3903855 3908113 27659 23398 CM091768.1 scaffold1197 99.55 True relocation, inconsistency = 123376 3778314 3780478 29821 27660 CM091768.1 scaffold1197 99.72 True local misassembly 3777219 3778645 31698 30272 CM091768.1 scaffold1197 98.88 True CONTIG scaffold1197 31698 misassembled 39416 39972 557 1 CM091761.1 scaffold1202 100.0 True CONTIG scaffold1202 557 correct CONTIG scaffold1201 3997 unaligned CONTIG scaffold1204 329 unaligned 2414096 2423586 9633 1 CM091760.1 scaffold1205 98.47 True CONTIG scaffold1205 9633 correct CONTIG scaffold1206 381 unaligned 2644407 2698803 1 55355 CM091761.1 scaffold1141 98.6 True fake: not a misassembly (possible transposable element) 42994 43636 55412 56054 CM091753.1 scaffold1141 99.84 True fake: not a misassembly (possible transposable element) 2698878 2701074 56055 58254 CM091761.1 scaffold1141 99.82 True local misassembly 2700154 3024873 58255 385647 CM091761.1 scaffold1141 98.67 True local misassembly 3022894 3075154 385648 438969 CM091761.1 scaffold1141 98.76 True indel: indel (> 5bp) 3075291 3075840 439125 439674 CM091761.1 scaffold1141 98.55 True CONTIG scaffold1141 440097 correct CONTIG scaffold1208 352 unaligned CONTIG scaffold1209 417 unaligned CONTIG scaffold1210 410 unaligned CONTIG scaffold1211 581 unaligned CONTIG scaffold1212 372 unaligned 9237131 9238344 1 1214 CM091763.1 scaffold1213 100.0 True CONTIG scaffold1213 1214 correct CONTIG scaffold1214 931 unaligned CONTIG scaffold1215 1389 unaligned 4211743 4212317 591 1 CM091762.1 scaffold1200 99.47 True indel: indel (> 5bp) 4210945 4211513 1372 804 CM091762.1 scaffold1200 99.47 True fake: scaffold gap size wrong estimation (local) 4199830 4210204 13397 2965 CM091762.1 scaffold1200 98.81 True local misassembly 4196516 4198795 16437 14143 CM091762.1 scaffold1200 98.14 True indel: indel (> 5bp) 4058410 4196502 156027 16471 CM091762.1 scaffold1200 98.75 True CONTIG scaffold1200 158335 correct CONTIG scaffold1217 413 unaligned 7258253 7278958 21925 357 CM091767.1 scaffold1207 95.99 True local misassembly 7254625 7256289 26090 24426 CM091767.1 scaffold1207 99.28 True local misassembly 7252785 7253733 28492 27544 CM091767.1 scaffold1207 99.58 True local misassembly 7251366 7252257 29918 29027 CM091767.1 scaffold1207 98.99 True CONTIG scaffold1207 29918 correct CONTIG scaffold1219 433 unaligned CONTIG scaffold1220 651 unaligned CONTIG scaffold1221 584 unaligned CONTIG scaffold1222 380 unaligned 212824 214380 1560 1 CM091752.1 scaffold1218 98.66 True indel: indel (<= 5bp) 205938 212783 8549 1599 CM091752.1 scaffold1218 97.27 True local misassembly 203944 205353 10553 9144 CM091752.1 scaffold1218 99.43 True indel: indel (> 5bp) 201876 203578 12611 10909 CM091752.1 scaffold1218 99.41 True indel: indel (<= 5bp) 201138 201644 13352 12846 CM091752.1 scaffold1218 99.21 True local misassembly 199569 200101 14975 14443 CM091752.1 scaffold1218 99.25 True indel: indel (<= 5bp) 198230 199290 16317 15257 CM091752.1 scaffold1218 99.53 True local misassembly 195378 196012 19175 18541 CM091752.1 scaffold1218 98.43 True indel: indel (<= 5bp) 194546 195074 20009 19481 CM091752.1 scaffold1218 99.24 True local misassembly 191891 193991 22665 20565 CM091752.1 scaffold1218 99.05 True local misassembly 189130 189830 24608 23908 CM091752.1 scaffold1218 99.71 True indel: indel (<= 5bp) 188522 189129 25217 24610 CM091752.1 scaffold1218 99.51 True indel: indel (> 5bp) 187793 188498 25923 25218 CM091752.1 scaffold1218 98.02 True fake: scaffold gap size wrong estimation (local) 182301 185607 32197 28895 CM091752.1 scaffold1218 98.64 True indel: indel (> 5bp) 181231 182171 33251 32307 CM091752.1 scaffold1218 98.52 True local misassembly 173310 180620 41438 34010 CM091752.1 scaffold1218 96.42 True fake: not a misassembly (possible transposable element) 172354 172929 41530 42106 CM091752.1 scaffold1218 97.57 True fake: not a misassembly (possible transposable element) 171246 171987 42851 42110 CM091752.1 scaffold1218 99.87 True indel: indel (<= 5bp) 169446 171241 44647 42852 CM091752.1 scaffold1218 99.28 True indel: indel (> 5bp) 167364 169050 46653 44967 CM091752.1 scaffold1218 99.47 True indel: indel (<= 5bp) 166743 167362 47273 46654 CM091752.1 scaffold1218 98.87 True indel: indel (<= 5bp) 165940 166522 48078 47496 CM091752.1 scaffold1218 97.6 True indel: indel (<= 5bp) 164055 165938 49962 48079 CM091752.1 scaffold1218 99.26 True indel: indel (<= 5bp) 163365 164054 50653 49964 CM091752.1 scaffold1218 99.71 True local misassembly 161141 162337 52213 51017 CM091752.1 scaffold1218 99.42 True indel: indel (<= 5bp) 159678 160907 53679 52450 CM091752.1 scaffold1218 99.11 True indel: indel (> 5bp) 157681 159304 55683 54060 CM091752.1 scaffold1218 99.63 True fake: scaffold gap size wrong estimation (local) 156583 157680 57260 56163 CM091752.1 scaffold1218 99.09 True indel: indel (<= 5bp) 155368 156231 58473 57610 CM091752.1 scaffold1218 98.73 True indel: indel (<= 5bp) 154846 155366 58994 58474 CM091752.1 scaffold1218 99.23 True fake: scaffold gap size wrong estimation (local) 140867 154101 73456 60179 CM091752.1 scaffold1218 98.8 True indel: indel (> 5bp) 96451 140647 118380 73699 CM091752.1 scaffold1218 98.01 True CONTIG scaffold1218 118380 correct CONTIG scaffold1224 378 unaligned 10477292 10478111 1 821 CM091765.1 scaffold1225 99.88 True CONTIG scaffold1225 821 correct 5024161 5028516 13 4371 CM091754.1 scaffold1170 99.86 True fake: scaffold gap size wrong estimation (local) 5028884 5033130 4771 9047 CM091754.1 scaffold1170 99.76 True fake: scaffold gap size wrong estimation (local) 5033524 5034463 10054 11059 CM091754.1 scaffold1170 99.26 True fake: scaffold gap size wrong estimation (local) 5035069 5084027 11852 61007 CM091754.1 scaffold1170 99.78 True fake: scaffold gap size wrong estimation (local) 5084161 5084939 61151 61959 CM091754.1 scaffold1170 100.0 True fake: scaffold gap size wrong estimation (local) 5087741 5258463 65071 237698 CM091754.1 scaffold1170 99.14 True fake: scaffold gap size wrong estimation (local) 5259093 5262002 238150 241045 CM091754.1 scaffold1170 98.94 True CONTIG scaffold1170 241045 correct CONTIG scaffold1226 431 unaligned CONTIG scaffold1228 404 unaligned CONTIG scaffold1227 328 unaligned 12924677 12934074 9304 12 CM091754.1 scaffold1223 97.82 True fake: scaffold gap size wrong estimation (local) 12907693 12924443 26700 9858 CM091754.1 scaffold1223 98.51 True indel: indel (> 5bp) 12901260 12907440 33088 26966 CM091754.1 scaffold1223 97.64 True local misassembly 12898817 12899727 35693 34783 CM091754.1 scaffold1223 99.45 True indel: indel (<= 5bp) 12897225 12898815 37284 35694 CM091754.1 scaffold1223 98.49 True local misassembly 12893711 12896033 41261 38939 CM091754.1 scaffold1223 99.53 True CONTIG scaffold1223 41261 correct 8410989 8415251 1 4365 CM091767.1 scaffold1229 97.39 True fake: scaffold gap size wrong estimation (local) 8415758 8416404 5697 6343 CM091767.1 scaffold1229 99.54 True indel: indel (> 5bp) 8416442 8417645 6410 7605 CM091767.1 scaffold1229 99.34 True CONTIG scaffold1229 7605 correct 4383368 4384128 1 780 CM091754.1 scaffold1230 96.54 True fake: scaffold gap size wrong estimation (local) 4384520 4385640 2234 3354 CM091754.1 scaffold1230 100.0 True CONTIG scaffold1230 3354 correct CONTIG scaffold1231 3852 unaligned CONTIG scaffold1232 543 unaligned 20550 22587 3159 5409 CM091755.1 scaffold1233 98.14 True CONTIG scaffold1233 5780 correct 15438289 15438995 417 1123 CM091752.1 scaffold1235 99.58 True CONTIG scaffold1235 1220 correct CONTIG scaffold1234 314 unaligned 8678212 8681596 3385 1 CM091767.1 scaffold1236 99.91 True fake: scaffold gap size wrong estimation (local) 8673905 8677953 8026 3979 CM091767.1 scaffold1236 99.9 True CONTIG scaffold1236 8026 correct 7920508 7932202 1 11719 CM091767.1 scaffold1237 99.68 True CONTIG scaffold1237 11719 correct 15284363 15284897 535 1 CM091752.1 scaffold1239 99.63 True CONTIG scaffold1239 795 correct 556022 564696 8687 1 CM091764.1 scaffold1238 99.56 True CONTIG scaffold1238 8687 correct CONTIG scaffold1241 758 unaligned CONTIG scaffold1109 2233 unaligned CONTIG scaffold1244 437 unaligned CONTIG scaffold1243 972 unaligned CONTIG scaffold1245 317 unaligned CONTIG scaffold1242 5293 unaligned 6504978 6631718 127776 612 CM091762.1 scaffold1216 99.24 True fake: scaffold gap size wrong estimation (local) 6341560 6504773 293270 128367 CM091762.1 scaffold1216 99.13 True indel: indel (> 5bp) 6323294 6341449 311556 293394 CM091762.1 scaffold1216 98.74 True indel: indel (> 5bp) 6318384 6322909 316427 311906 CM091762.1 scaffold1216 98.77 True CONTIG scaffold1216 316456 correct 4225564 4231486 5941 1 CM091754.1 scaffold1248 99.63 True CONTIG scaffold1248 5941 correct CONTIG scaffold1247 4255 unaligned 16341190 16341752 116 678 CM091752.1 scaffold1251 98.4 True CONTIG scaffold1251 678 correct 17384434 17385018 873 289 CM091751.1 scaffold1252 99.83 True CONTIG scaffold1252 873 correct CONTIG scaffold1249 493 unaligned CONTIG scaffold1254 612 unaligned CONTIG scaffold1253 751 unaligned CONTIG scaffold1256 308 unaligned CONTIG scaffold1255 397 unaligned CONTIG scaffold1258 267 unaligned CONTIG scaffold1259 352 unaligned 10308451 10341188 33133 1 CM091765.1 scaffold1246 98.74 True local misassembly 10295959 10305155 42533 33134 CM091765.1 scaffold1246 99.5 True CONTIG scaffold1246 42533 correct CONTIG scaffold1261 336 unaligned CONTIG scaffold1260 308 unaligned CONTIG scaffold1257 6384 unaligned CONTIG scaffold1263 347 unaligned CONTIG scaffold1265 721 unaligned 3874945 3950150 75264 1 CM091763.1 scaffold1203 99.22 True fake: scaffold gap size wrong estimation (local) 3826330 3874591 123418 75944 CM091763.1 scaffold1203 97.67 True local misassembly 3728433 3827232 223233 123424 CM091763.1 scaffold1203 98.45 True indel: indel (<= 5bp) 3723831 3728334 227854 223334 CM091763.1 scaffold1203 98.87 True CONTIG scaffold1203 228177 correct CONTIG scaffold1264 393 unaligned 3152473 3153081 1 631 CM091752.1 scaffold1268 95.4 True fake: scaffold gap size wrong estimation (local) 3154295 3156624 2009 4358 CM091752.1 scaffold1268 98.98 True fake: scaffold gap size wrong estimation (local) 3158430 3161111 6650 9366 CM091752.1 scaffold1268 98.53 True fake: scaffold gap size wrong estimation (local) 3161331 3166040 9895 14661 CM091752.1 scaffold1268 99.57 True CONTIG scaffold1268 14661 correct 7401717 7402548 142 974 CM091752.1 scaffold1139 98.32 True CONTIG scaffold1139 1066 correct 16707020 16707625 56 661 CM091752.1 scaffold1270 97.36 True CONTIG scaffold1270 661 correct CONTIG scaffold1271 599 unaligned 15991232 15991865 634 1 CM091752.1 scaffold1272 99.37 True CONTIG scaffold1272 634 correct CONTIG scaffold1273 381 unaligned CONTIG scaffold1269 467 unaligned 11419454 11421614 2187 7 CM091765.1 scaffold1275 99.07 True local misassembly 11405176 11416256 13658 2188 CM091765.1 scaffold1275 99.11 True CONTIG scaffold1275 13658 correct CONTIG scaffold1274 402 unaligned 13434039 13434962 940 1 CM091758.1 scaffold1277 97.98 True fake: scaffold gap size wrong estimation (local) 13429421 13432706 5835 2522 CM091758.1 scaffold1277 98.56 True fake: scaffold gap size wrong estimation (local) 13427373 13429304 8351 6424 CM091758.1 scaffold1277 99.28 True CONTIG scaffold1277 8579 correct 15587886 15595000 14 7176 CM091757.1 scaffold1278 99.23 True CONTIG scaffold1278 7176 correct CONTIG scaffold1240 1593 unaligned CONTIG scaffold1266 759 unaligned 686221 712112 1 25877 CM091755.1 scaffold1276 99.9 True indel: indel (> 5bp) 712150 746070 25924 60428 CM091755.1 scaffold1276 98.26 True fake: scaffold gap size wrong estimation (local) 747849 749872 62667 64732 CM091755.1 scaffold1276 99.95 True fake: scaffold gap size wrong estimation (local) 750026 799389 64905 114255 CM091755.1 scaffold1276 99.92 True CONTIG scaffold1276 117926 correct CONTIG scaffold1282 382 unaligned CONTIG scaffold1281 1892 unaligned CONTIG scaffold1280 429 unaligned CONTIG scaffold1284 430 unaligned CONTIG scaffold1286 460 unaligned CONTIG scaffold1283 1017 unaligned 10944157 10969074 1 25974 CM091765.1 scaffold1267 98.79 True relocation, inconsistency = 73460 11043006 11048162 26446 31602 CM091765.1 scaffold1267 100.0 True indel: indel (> 5bp) 11048250 11051420 31719 34928 CM091765.1 scaffold1267 98.18 True fake: not a misassembly (possible transposable element) 17380086 17380624 35467 34929 CM091751.1 scaffold1267 99.84 True fake: not a misassembly (possible transposable element) 11052187 11053883 36519 38215 CM091765.1 scaffold1267 99.82 True fake: scaffold gap size wrong estimation (local) 11054898 11055430 39328 39861 CM091765.1 scaffold1267 99.81 True CONTIG scaffold1267 39861 misassembled 4199318 4200006 1 689 CM091768.1 scaffold1289 99.85 True CONTIG scaffold1289 689 correct CONTIG scaffold1290 438 unaligned CONTIG scaffold1291 716 unaligned CONTIG scaffold1292 372 unaligned CONTIG scaffold1293 385 unaligned CONTIG scaffold1285 4065 unaligned CONTIG scaffold1295 406 unaligned 3748207 3754149 1 6008 CM091752.1 scaffold1294 97.79 True indel: indel (> 5bp) 3754176 3756860 6057 8762 CM091752.1 scaffold1294 98.89 True CONTIG scaffold1294 8762 correct CONTIG scaffold1262 3599 unaligned CONTIG scaffold1287 3641 unaligned 4464803 4465819 1013 1 CM091754.1 scaffold1299 99.31 True CONTIG scaffold1299 1013 correct CONTIG scaffold1298 307 unaligned 11068165 11068887 665 1454 CM091765.1 scaffold1279 99.58 True indel: indel (> 5bp) 11069003 11069514 1598 2109 CM091765.1 scaffold1279 99.61 True CONTIG scaffold1279 2109 correct 3843912 3845653 1 1746 CM091752.1 scaffold1250 98.91 True fake: scaffold gap size wrong estimation (local) 3845734 3846387 1831 2484 CM091752.1 scaffold1250 100.0 True local misassembly 3846209 3894368 2691 51192 CM091752.1 scaffold1250 98.94 True local misassembly 3894478 3895922 51401 52895 CM091752.1 scaffold1250 96.66 True indel: indel (> 5bp) 3896135 3934622 53122 91626 CM091752.1 scaffold1250 99.59 True local misassembly 3934678 3944061 91785 101173 CM091752.1 scaffold1250 99.87 True local misassembly 3944247 3947042 102273 105068 CM091752.1 scaffold1250 100.0 True local misassembly 3950958 3953122 105287 107451 CM091752.1 scaffold1250 99.95 True indel: indel (<= 5bp) 3953124 3955305 107452 109633 CM091752.1 scaffold1250 100.0 True indel: indel (> 5bp) 3955392 3969350 109668 123626 CM091752.1 scaffold1250 99.99 True CONTIG scaffold1250 123626 correct CONTIG scaffold1303 366 unaligned CONTIG scaffold1301 454 unaligned 16298653 16300132 1 1483 CM091752.1 scaffold1305 99.8 True CONTIG scaffold1305 1483 correct CONTIG scaffold1296 4902 unaligned CONTIG scaffold1307 318 unaligned CONTIG scaffold1304 412 unaligned CONTIG scaffold1302 438 unaligned CONTIG scaffold1308 321 unaligned CONTIG scaffold1297 3082 unaligned CONTIG scaffold1300 4702 unaligned CONTIG scaffold1309 734 unaligned 13246007 13246644 1 638 CM091752.1 scaffold1314 96.55 True CONTIG scaffold1314 638 correct CONTIG scaffold1315 299 unaligned CONTIG scaffold1310 966 unaligned CONTIG scaffold1311 831 unaligned CONTIG scaffold1318 383 unaligned CONTIG scaffold1288 4587 unaligned CONTIG scaffold1312 1299 unaligned CONTIG scaffold1317 405 unaligned 912617 961431 1 49230 CM091755.1 scaffold1319 99.69 True CONTIG scaffold1319 49451 correct CONTIG scaffold1321 404 unaligned CONTIG scaffold1324 378 unaligned 16351658 16352493 844 1 CM091752.1 scaffold1325 98.58 True CONTIG scaffold1325 844 correct 19550941 19551487 547 1 CM091751.1 scaffold1326 98.9 True CONTIG scaffold1326 547 correct 20493 22211 4843 3095 CM091752.1 scaffold1327 95.45 True unknown 2871436 2872127 10340 9652 CM091752.1 scaffold1327 97.11 True unknown 59277 59890 14349 14963 CM091763.1 scaffold1327 96.91 True unknown CONTIG scaffold1327 16788 mis_unaligned CONTIG scaffold1322 498 unaligned CONTIG scaffold1329 783 unaligned CONTIG scaffold1330 300 unaligned CONTIG scaffold1331 707 unaligned 4611083 4611633 551 1 CM091754.1 scaffold1323 99.46 True fake: scaffold gap size wrong estimation (local) 4605429 4610347 7014 2064 CM091754.1 scaffold1323 99.07 True fake: scaffold gap size wrong estimation (local) 4596334 4605174 16295 7749 CM091754.1 scaffold1323 95.96 True fake: scaffold gap size wrong estimation (local) 4595340 4596245 17324 16390 CM091754.1 scaffold1323 99.78 True fake: scaffold gap size wrong estimation (local) 4572687 4594815 39585 17746 CM091754.1 scaffold1323 98.14 True CONTIG scaffold1323 41512 correct CONTIG scaffold1328 775 unaligned CONTIG scaffold1313 1147 unaligned 9535311 9541087 1 5825 CM091767.1 scaffold1320 98.99 True fake: scaffold gap size wrong estimation (local) 9541610 9542580 6711 7681 CM091767.1 scaffold1320 99.07 True fake: scaffold gap size wrong estimation (local) 9543171 9547063 9482 13389 CM091767.1 scaffold1320 99.36 True CONTIG scaffold1320 14585 correct 18998201 18999889 1 1693 CM091751.1 scaffold1333 99.05 True local misassembly 19000455 19003324 2304 5184 CM091751.1 scaffold1333 98.51 True fake: scaffold gap size wrong estimation (local) 19003580 19004159 5811 6390 CM091751.1 scaffold1333 98.97 True local misassembly 19005664 19006896 6391 7623 CM091751.1 scaffold1333 99.51 True indel: indel (> 5bp) 19007312 19007882 8049 8619 CM091751.1 scaffold1333 100.0 True local misassembly 19010181 19010796 10935 11550 CM091751.1 scaffold1333 99.35 True indel: stretch of mismatches 19010875 19011679 11629 12433 CM091751.1 scaffold1333 99.38 True indel: indel (<= 5bp) 19011680 19013048 12435 13803 CM091751.1 scaffold1333 99.2 True indel: indel (<= 5bp) 19013512 19015098 14265 15851 CM091751.1 scaffold1333 98.8 True indel: indel (<= 5bp) 19015594 19016207 16348 16961 CM091751.1 scaffold1333 100.0 True indel: indel (> 5bp) 19016719 19017306 17417 18004 CM091751.1 scaffold1333 98.13 True local misassembly 19018423 19018938 19122 19637 CM091751.1 scaffold1333 98.64 True local misassembly 19019898 19020943 20599 21644 CM091751.1 scaffold1333 99.71 True local misassembly 19021535 19022227 22234 22926 CM091751.1 scaffold1333 99.13 True local misassembly 19022729 19024001 23432 24704 CM091751.1 scaffold1333 99.21 True fake: scaffold gap size wrong estimation (local) 19026189 19027687 27082 28566 CM091751.1 scaffold1333 98.0 True local misassembly 19026731 19030056 28567 31903 CM091751.1 scaffold1333 97.79 True CONTIG scaffold1333 33626 correct 16107032 16108826 1 1805 CM091758.1 scaffold1337 99.22 True fake: scaffold gap size wrong estimation (local) 16109722 16111040 3269 4587 CM091758.1 scaffold1337 99.92 True fake: scaffold gap size wrong estimation (local) 16111648 16113441 5627 7445 CM091758.1 scaffold1337 96.25 True CONTIG scaffold1337 7445 correct CONTIG scaffold1338 319 unaligned 6292756 6293560 518 1321 CM091767.1 scaffold1336 96.52 True CONTIG scaffold1336 3176 correct_unaligned CONTIG scaffold1339 356 unaligned CONTIG scaffold1341 372 unaligned CONTIG scaffold1340 383 unaligned 1269877 1351689 19 82162 CM091763.1 scaffold1343 99.45 True fake: scaffold gap size wrong estimation (local) 1353005 1356422 83822 87364 CM091763.1 scaffold1343 96.68 True fake: scaffold gap size wrong estimation (local) 1356495 1357791 87456 88758 CM091763.1 scaffold1343 98.77 True local misassembly 1358575 1359892 89526 90848 CM091763.1 scaffold1343 99.47 True indel: indel (> 5bp) 1360036 1360984 91034 92009 CM091763.1 scaffold1343 96.93 True fake: scaffold gap size wrong estimation (local) 1361526 1365080 93228 96864 CM091763.1 scaffold1343 98.56 True CONTIG scaffold1343 96864 correct CONTIG scaffold1344 2083 unaligned CONTIG scaffold1345 659 unaligned CONTIG scaffold1346 329 unaligned CONTIG scaffold1347 369 unaligned CONTIG scaffold1348 401 unaligned 5124667 5145348 21594 1 CM091766.1 scaffold1332 95.6 True local misassembly 5042424 5125238 105656 21595 CM091766.1 scaffold1332 99.34 True indel: indel (> 5bp) 4836066 5042369 312749 105657 CM091766.1 scaffold1332 99.0 True indel: indel (<= 5bp) 4795623 4836006 353194 312811 CM091766.1 scaffold1332 99.9 True indel: indel (> 5bp) 4752392 4795504 396443 353333 CM091766.1 scaffold1332 99.97 True local misassembly 4708693 4752286 440581 396988 CM091766.1 scaffold1332 99.89 True CONTIG scaffold1332 440581 correct 9169924 9170751 1087 260 CM091762.1 scaffold1306 99.88 True fake: scaffold gap size wrong estimation (local) 9089124 9167467 81007 2350 CM091762.1 scaffold1306 98.87 True local misassembly 8997487 9088969 174197 81465 CM091762.1 scaffold1306 99.46 True local misassembly 8981562 8997291 190460 174723 CM091762.1 scaffold1306 99.08 True fake: scaffold gap size wrong estimation (local) 8872661 8981333 301023 190861 CM091762.1 scaffold1306 98.58 True fake: scaffold gap size wrong estimation (local) 8806957 8872102 368487 302287 CM091762.1 scaffold1306 99.34 True indel: indel (<= 5bp) 8722011 8806874 454165 368566 CM091762.1 scaffold1306 98.7 True indel: indel (<= 5bp) 8658003 8721989 520688 454189 CM091762.1 scaffold1306 98.31 True fake: scaffold gap size wrong estimation (local) 8610812 8657864 568597 521564 CM091762.1 scaffold1306 99.92 True local misassembly 8573858 8611869 606964 568598 CM091762.1 scaffold1306 99.72 True fake: scaffold gap size wrong estimation (local) 8530200 8573365 654171 608788 CM091762.1 scaffold1306 99.51 True local misassembly 8505556 8531162 680304 654172 CM091762.1 scaffold1306 98.83 True local misassembly 8481379 8505347 707570 680654 CM091762.1 scaffold1306 98.98 True indel: indel (> 5bp) 8380651 8481201 809868 707716 CM091762.1 scaffold1306 99.37 True fake: scaffold gap size wrong estimation (local) 8317815 8380534 875357 809990 CM091762.1 scaffold1306 98.9 True fake: scaffold gap size wrong estimation (local) 8201125 8317618 993302 876250 CM091762.1 scaffold1306 99.11 True local misassembly 8147975 8203021 1048613 993303 CM091762.1 scaffold1306 99.18 True indel: indel (> 5bp) 7853172 8147874 1345968 1048699 CM091762.1 scaffold1306 99.47 True indel: indel (> 5bp) 7841139 7852826 1358005 1346324 CM091762.1 scaffold1306 99.35 True local misassembly 7835041 7840687 1364415 1358765 CM091762.1 scaffold1306 99.59 True indel: indel (> 5bp) 7827414 7834988 1372043 1364478 CM091762.1 scaffold1306 98.83 True CONTIG scaffold1306 1374411 correct 1315166 1326176 1 11123 CM091755.1 scaffold1349 98.65 True indel: indel (> 5bp) 1326214 1328938 11190 13915 CM091755.1 scaffold1349 99.82 True CONTIG scaffold1349 13915 correct 14292768 14293291 2027 1504 CM091758.1 scaffold1351 99.81 True indel: indel (<= 5bp) 14289870 14292766 4924 2028 CM091758.1 scaffold1351 99.86 True local misassembly 14270353 14289277 24386 6170 CM091758.1 scaffold1351 95.17 True CONTIG scaffold1351 24386 correct CONTIG scaffold1352 512 unaligned 3394607 3395552 32 977 CM091768.1 scaffold1354 99.79 True CONTIG scaffold1354 977 correct CONTIG scaffold1355 712 unaligned CONTIG scaffold1356 317 unaligned CONTIG scaffold1357 388 unaligned 16669208 16723534 54703 1 CM091756.1 scaffold1335 99.3 True fake: scaffold gap size wrong estimation (local) 16667303 16668038 57368 56617 CM091756.1 scaffold1335 97.21 True fake: scaffold gap size wrong estimation (local) 16614509 16666993 111227 57536 CM091756.1 scaffold1335 98.37 True fake: scaffold gap size wrong estimation (local) 16320563 16613975 409465 113199 CM091756.1 scaffold1335 99.14 True CONTIG scaffold1335 410997 correct CONTIG scaffold1358 778 unaligned CONTIG scaffold1360 384 unaligned CONTIG scaffold1361 1127 unaligned CONTIG scaffold1362 405 unaligned CONTIG scaffold1363 52491 unaligned CONTIG scaffold1364 420 unaligned CONTIG scaffold1365 585 unaligned CONTIG scaffold1366 390 unaligned 6625973 6626875 903 1 CM091768.1 scaffold1367 98.01 True CONTIG scaffold1367 903 correct 4220099 4565902 345904 257 CM091762.1 scaffold1316 97.55 True CONTIG scaffold1316 345915 correct 2520188 2550357 30193 32 CM091754.1 scaffold1342 99.46 True local misassembly 2517241 2520122 33698 30827 CM091754.1 scaffold1342 98.13 True local misassembly 2484764 2517006 66155 33821 CM091754.1 scaffold1342 97.92 True fake: scaffold gap size wrong estimation (local) 2471531 2484566 79502 66562 CM091754.1 scaffold1342 97.83 True local misassembly 2469800 2470998 81233 80027 CM091754.1 scaffold1342 95.94 True indel: indel (> 5bp) 2451969 2469518 98557 81458 CM091754.1 scaffold1342 95.14 True local misassembly 2447457 2451141 102943 99267 CM091754.1 scaffold1342 98.27 True fake: scaffold gap size wrong estimation (local) 2393346 2447143 157214 103270 CM091754.1 scaffold1342 96.58 True CONTIG scaffold1342 157254 correct CONTIG scaffold1370 745 unaligned CONTIG scaffold1369 4257 unaligned 5395864 5396431 568 1 CM091764.1 scaffold1371 100.0 True CONTIG scaffold1371 1143 correct_unaligned CONTIG scaffold1353 2734 unaligned CONTIG scaffold1373 457 unaligned CONTIG scaffold1374 419 unaligned 16870154 16870870 727 1 CM091752.1 scaffold1376 96.84 True CONTIG scaffold1376 727 correct CONTIG scaffold1375 249 unaligned CONTIG scaffold1378 390 unaligned CONTIG scaffold1372 773 unaligned CONTIG scaffold1380 431 unaligned CONTIG scaffold1381 331 unaligned CONTIG scaffold1382 327 unaligned CONTIG scaffold1383 760 unaligned 3737013 3739624 5109 2509 CM091768.1 scaffold1379 99.39 True CONTIG scaffold1379 5109 correct CONTIG scaffold1385 379 unaligned 16142614 16145215 1 2603 CM091753.1 scaffold1384 99.15 True local misassembly 16143959 16148740 2604 7417 CM091753.1 scaffold1384 97.44 True CONTIG scaffold1384 7417 correct CONTIG scaffold1377 372 unaligned 4281332 4282093 762 1 CM091768.1 scaffold1388 99.87 True CONTIG scaffold1388 762 correct CONTIG scaffold1389 719 unaligned 10275029 10326220 52195 746 CM091751.1 scaffold1386 99.1 True local misassembly 10247294 10275554 81098 52196 CM091751.1 scaffold1386 99.37 True indel: indel (> 5bp) 10219767 10247222 108639 81178 CM091751.1 scaffold1386 99.55 True local misassembly 10171620 10221050 158337 108640 CM091751.1 scaffold1386 99.38 True CONTIG scaffold1386 158337 correct CONTIG scaffold1390 288 unaligned CONTIG scaffold1391 391 unaligned 17273537 17274248 718 7 CM091752.1 scaffold1393 97.05 True CONTIG scaffold1393 718 correct CONTIG scaffold1387 967 unaligned CONTIG scaffold1394 335 unaligned 10758552 10766267 7726 1 CM091765.1 scaffold1396 99.81 True CONTIG scaffold1396 7726 correct CONTIG scaffold1397 422 unaligned 16461709 16462305 1 597 CM091752.1 scaffold1398 98.83 True CONTIG scaffold1398 597 correct CONTIG scaffold1399 366 unaligned CONTIG scaffold1395 755 unaligned CONTIG scaffold1392 798 unaligned CONTIG scaffold1402 342 unaligned 13386183 13394172 8098 1 CM091758.1 scaffold1401 98.6 True indel: indel (> 5bp) 13382771 13386126 11536 8164 CM091758.1 scaffold1401 99.2 True CONTIG scaffold1401 11536 correct CONTIG scaffold1403 400 unaligned CONTIG scaffold1400 478 unaligned CONTIG scaffold1405 723 unaligned 11020967 11021692 1 726 CM091765.1 scaffold1406 99.72 True indel: indel (> 5bp) 11021803 11026838 798 5881 CM091765.1 scaffold1406 98.96 True fake: scaffold gap size wrong estimation (local) 11026990 11028922 6033 7965 CM091765.1 scaffold1406 99.74 True fake: scaffold gap size wrong estimation (local) 11029583 11036989 9347 16807 CM091765.1 scaffold1406 99.44 True CONTIG scaffold1406 16854 correct 7210295 7211544 1 1255 CM091758.1 scaffold1408 98.41 True CONTIG scaffold1408 1255 correct CONTIG scaffold1409 427 unaligned CONTIG scaffold1410 540 unaligned 15719184 15721139 1 1984 CM091752.1 scaffold1407 97.08 True CONTIG scaffold1407 1984 correct CONTIG scaffold1411 371 unaligned CONTIG scaffold1413 351 unaligned 4307470 4309857 3504 1114 CM091768.1 scaffold1412 98.7 True indel: indel (<= 5bp) 4305480 4307425 5492 3548 CM091768.1 scaffold1412 98.72 True fake: scaffold gap size wrong estimation (local) 4302647 4304345 8659 6961 CM091768.1 scaffold1412 99.18 True CONTIG scaffold1412 8659 correct 5536507 5554263 17829 14 CM091767.1 scaffold1359 99.06 True local misassembly 5523830 5537503 32989 17831 CM091767.1 scaffold1359 98.74 True local misassembly 5350403 5523571 206604 33100 CM091767.1 scaffold1359 99.58 True local misassembly 5269373 5350943 290891 206605 CM091767.1 scaffold1359 99.06 True indel: indel (> 5bp) 5209394 5269210 351016 291088 CM091767.1 scaffold1359 98.87 True fake: scaffold gap size wrong estimation (local) 5189772 5209596 372037 351513 CM091767.1 scaffold1359 99.23 True indel: indel (> 5bp) 5161398 5189725 400890 372074 CM091767.1 scaffold1359 95.85 True local misassembly 5156182 5160922 405816 400908 CM091767.1 scaffold1359 99.3 True CONTIG scaffold1359 405816 correct CONTIG scaffold1416 684 unaligned 4722641 4749146 1 26496 CM091763.1 scaffold1414 99.85 True fake: not a misassembly (possible transposable element) 4748012 4748861 27346 26497 CM091763.1 scaffold1414 99.89 True fake: not a misassembly (possible transposable element) 4749205 4751518 27347 29660 CM091763.1 scaffold1414 99.83 True fake: scaffold gap size wrong estimation (local) 4751644 4831578 30444 110384 CM091763.1 scaffold1414 99.87 True indel: indel (<= 5bp) 4831620 4906203 110425 185045 CM091763.1 scaffold1414 99.61 True indel: indel (> 5bp) 4906334 4922259 185187 201577 CM091763.1 scaffold1414 96.36 True CONTIG scaffold1414 201577 correct CONTIG scaffold1415 721 unaligned CONTIG scaffold1419 328 unaligned 130715 132057 1 1374 CM091764.1 scaffold1417 97.53 True fake: scaffold gap size wrong estimation (local) 131596 135612 2144 6161 CM091764.1 scaffold1417 99.83 True CONTIG scaffold1417 6161 correct CONTIG scaffold1421 738 unaligned CONTIG scaffold1422 450 unaligned 1363584 1365366 1823 1 CM091764.1 scaffold1420 98.07 True fake: scaffold gap size wrong estimation (local) 1361845 1364695 4858 2008 CM091764.1 scaffold1420 99.89 True fake: scaffold gap size wrong estimation (local) 1360925 1361464 6349 5810 CM091764.1 scaffold1420 100.0 True fake: scaffold gap size wrong estimation (local) 1360220 1360719 7094 6594 CM091764.1 scaffold1420 98.4 True fake: scaffold gap size wrong estimation (local) 1353908 1357132 13649 10389 CM091764.1 scaffold1420 99.07 True CONTIG scaffold1420 13649 correct CONTIG scaffold1424 457 unaligned CONTIG scaffold1425 376 unaligned CONTIG scaffold1426 314 unaligned CONTIG scaffold1427 343 unaligned 16981220 16982117 1 894 CM091752.1 scaffold1428 99.11 True CONTIG scaffold1428 894 correct 588693 589267 575 1 CM091764.1 scaffold1418 99.83 True fake: scaffold gap size wrong estimation (local) 570537 587094 18906 2322 CM091764.1 scaffold1418 99.56 True fake: scaffold gap size wrong estimation (local) 568014 570301 21965 19691 CM091764.1 scaffold1418 99.16 True indel: indel (<= 5bp) 565441 567950 24577 22030 CM091764.1 scaffold1418 98.39 True CONTIG scaffold1418 24577 correct CONTIG scaffold1430 186066 unaligned 7469338 7469868 1 532 CM091764.1 scaffold1431 98.13 True indel: indel (<= 5bp) 7469998 7503590 660 34282 CM091764.1 scaffold1431 99.44 True fake: scaffold gap size wrong estimation (local) 7503704 7514186 34959 45421 CM091764.1 scaffold1431 99.05 True CONTIG scaffold1431 45421 correct CONTIG scaffold1429 4565 unaligned CONTIG scaffold1432 348 unaligned CONTIG scaffold1434 2208 unaligned CONTIG scaffold1433 671 unaligned CONTIG scaffold1436 680 unaligned CONTIG scaffold1437 1055 unaligned CONTIG scaffold1438 740 unaligned 12650631 12651289 656 1 CM091752.1 scaffold1439 95.76 True CONTIG scaffold1439 656 correct CONTIG scaffold1423 3579 unaligned CONTIG scaffold1441 349 unaligned 10443529 10444896 1 1368 CM091752.1 scaffold1442 100.0 True CONTIG scaffold1442 1368 correct 9899799 9900751 1 953 CM091765.1 scaffold1443 99.79 True fake: scaffold gap size wrong estimation (local) 9901339 9903312 1596 3569 CM091765.1 scaffold1443 99.95 True indel: indel (<= 5bp) 9903313 9904596 3571 4854 CM091765.1 scaffold1443 99.92 True indel: indel (<= 5bp) 9904597 9907439 4858 7700 CM091765.1 scaffold1443 100.0 True indel: indel (<= 5bp) 9907452 9910481 7714 10743 CM091765.1 scaffold1443 100.0 True indel: indel (<= 5bp) 9910484 9912184 10744 12444 CM091765.1 scaffold1443 99.94 True indel: indel (> 5bp) 9912194 9912817 12445 13068 CM091765.1 scaffold1443 100.0 True indel: indel (<= 5bp) 9913197 9914492 13446 14741 CM091765.1 scaffold1443 100.0 True indel: stretch of mismatches 9914934 9915780 15183 16029 CM091765.1 scaffold1443 99.88 True indel: indel (<= 5bp) 9915782 9918164 16030 18412 CM091765.1 scaffold1443 99.71 True local misassembly 9921855 9923525 18413 20083 CM091765.1 scaffold1443 99.94 True indel: indel (<= 5bp) 9923584 9926136 20145 22697 CM091765.1 scaffold1443 99.96 True indel: indel (<= 5bp) 9926138 9928937 22698 25497 CM091765.1 scaffold1443 99.96 True indel: indel (<= 5bp) 9928938 9929727 25499 26288 CM091765.1 scaffold1443 99.87 True indel: indel (> 5bp) 9929734 9930719 26289 27274 CM091765.1 scaffold1443 100.0 True local misassembly 9931075 9931810 28000 28735 CM091765.1 scaffold1443 99.59 True local misassembly 9932991 9933819 29935 30763 CM091765.1 scaffold1443 99.88 True CONTIG scaffold1443 33087 correct CONTIG scaffold1444 385 unaligned CONTIG scaffold1445 363 unaligned CONTIG scaffold1440 970 unaligned 5081125 5093588 1 12544 CM091768.1 scaffold1446 99.18 True indel: indel (> 5bp) 5093612 5114189 12624 33487 CM091768.1 scaffold1446 98.44 True CONTIG scaffold1446 33487 correct CONTIG scaffold1448 385 unaligned CONTIG scaffold1449 366 unaligned CONTIG scaffold1450 313 unaligned CONTIG scaffold1435 4729 unaligned CONTIG scaffold1452 397 unaligned CONTIG scaffold1453 435 unaligned 9158519 9159791 1 1273 CM091767.1 scaffold1454 99.92 True CONTIG scaffold1454 1273 correct CONTIG scaffold1368 18691 unaligned 9241685 9242887 1202 1 CM091763.1 scaffold1456 99.5 True CONTIG scaffold1456 1202 correct 110343 111372 1 1030 CM091764.1 scaffold1457 100.0 True CONTIG scaffold1457 1030 correct CONTIG scaffold1458 403 unaligned CONTIG scaffold1451 3747 unaligned CONTIG scaffold1447 5307 unaligned CONTIG scaffold1461 493 unaligned CONTIG scaffold1460 434 unaligned CONTIG scaffold1463 421 unaligned 4451912 4454674 1 2777 CM091754.1 scaffold1464 97.59 True CONTIG scaffold1464 3123 correct CONTIG scaffold1465 313 unaligned CONTIG scaffold1462 432 unaligned 4974295 4975175 1 881 CM091768.1 scaffold1455 100.0 True local misassembly 4974138 4985529 882 12385 CM091768.1 scaffold1455 98.78 True CONTIG scaffold1455 14173 correct CONTIG scaffold1467 488 unaligned CONTIG scaffold1468 812 unaligned CONTIG scaffold1466 406 unaligned 1447037 1447682 657 12 CM091764.1 scaffold1470 95.36 True CONTIG scaffold1470 931 correct CONTIG scaffold1472 799 unaligned CONTIG scaffold1473 333 unaligned 9148441 9150744 2304 1 CM091767.1 scaffold1474 99.78 True CONTIG scaffold1474 2304 correct CONTIG scaffold1475 434 unaligned CONTIG scaffold1476 417 unaligned CONTIG scaffold1477 464 unaligned CONTIG scaffold1478 769 unaligned 13077299 13077903 605 1 CM091757.1 scaffold1471 99.17 True CONTIG scaffold1471 4655 correct_unaligned CONTIG scaffold1480 412 unaligned CONTIG scaffold1481 440 unaligned 4784688 4786390 1 1722 CM091754.1 scaffold1482 98.9 True CONTIG scaffold1482 1722 correct 52702 58162 489 6029 CM091763.1 scaffold1479 97.8 True CONTIG scaffold1479 6511 correct CONTIG scaffold1484 461 unaligned CONTIG scaffold1483 4354 unaligned CONTIG scaffold1485 1031 unaligned 12775694 12776239 1 546 CM091753.1 scaffold1487 100.0 True CONTIG scaffold1487 546 correct CONTIG scaffold1486 359 unaligned CONTIG scaffold1489 413 unaligned 89756 93825 4145 1 CM091752.1 scaffold1488 97.49 True CONTIG scaffold1488 5545 correct CONTIG scaffold1469 546 unaligned CONTIG scaffold1492 385 unaligned CONTIG scaffold1493 444 unaligned CONTIG scaffold1490 356 unaligned CONTIG scaffold1494 708 unaligned 1 617 631 1 CM091763.1 scaffold1495 97.31 True CONTIG scaffold1495 681 correct 6472747 6474245 1 1499 CM091768.1 scaffold1497 99.87 True indel: indel (> 5bp) 6474246 6476068 1525 3347 CM091768.1 scaffold1497 100.0 True local misassembly 6478432 6482516 5772 9871 CM091768.1 scaffold1497 98.98 True CONTIG scaffold1497 9871 correct CONTIG scaffold1498 390 unaligned CONTIG scaffold1499 382 unaligned CONTIG scaffold1496 850 unaligned 5382548 5385881 3330 1 CM091764.1 scaffold1501 98.74 True CONTIG scaffold1501 3330 correct CONTIG scaffold1502 658 unaligned 6741963 6844594 104335 1 CM091763.1 scaffold1404 99.21 True indel: indel (> 5bp) 6657552 6741914 189208 104397 CM091763.1 scaffold1404 99.44 True fake: scaffold gap size wrong estimation (local) 6594005 6657801 253716 189922 CM091763.1 scaffold1404 99.99 True relocation, inconsistency = 40017 6424298 6553987 385016 253717 CM091763.1 scaffold1404 99.5 True local misassembly 6421548 6423240 387601 385913 CM091763.1 scaffold1404 99.41 True CONTIG scaffold1404 387601 misassembled 16404666 16405219 553 1 CM091752.1 scaffold1504 99.82 True CONTIG scaffold1504 553 correct CONTIG scaffold1503 453 unaligned CONTIG scaffold1506 321 unaligned 2935178 2940638 1 5384 CM091768.1 scaffold1505 97.38 True local misassembly 2939211 2942204 5399 8338 CM091768.1 scaffold1505 97.17 True CONTIG scaffold1505 9228 correct CONTIG scaffold1500 1192 unaligned 2100837 2104109 3295 1 CM091764.1 scaffold1507 99.94 True fake: scaffold gap size wrong estimation (local) 2087582 2100339 17171 3903 CM091764.1 scaffold1507 96.23 True CONTIG scaffold1507 17171 correct 1354684 1357643 2963 1 CM091755.1 scaffold1508 99.76 True local misassembly 1352206 1354332 5821 3695 CM091755.1 scaffold1508 100.0 True relocation, inconsistency = 18021 1329315 1334184 10734 5822 CM091755.1 scaffold1508 98.86 True CONTIG scaffold1508 10734 misassembled 10469519 10470022 614 1118 CM091765.1 scaffold1510 99.6 True local misassembly 10469519 10472220 1332 4058 CM091765.1 scaffold1510 98.68 True CONTIG scaffold1510 4058 correct 8928698 8929930 1 1233 CM091767.1 scaffold1509 99.92 True local misassembly 8930749 8931697 2068 3016 CM091767.1 scaffold1509 98.74 True local misassembly 8932701 8935946 4235 7523 CM091767.1 scaffold1509 98.63 True fake: scaffold gap size wrong estimation (local) 8941509 8942294 8112 8911 CM091767.1 scaffold1509 99.87 True local misassembly 8943604 8953000 9182 18578 CM091767.1 scaffold1509 99.95 True CONTIG scaffold1509 18578 correct CONTIG scaffold1511 405 unaligned CONTIG scaffold1514 387 unaligned CONTIG scaffold1515 388 unaligned CONTIG scaffold1516 628 unaligned 3860165 3863429 1 3267 CM091768.1 scaffold1517 99.88 True fake: scaffold gap size wrong estimation (local) 3864229 3872910 4363 13153 CM091768.1 scaffold1517 98.61 True indel: indel (> 5bp) 3873126 3873714 13328 13917 CM091768.1 scaffold1517 99.32 True local misassembly 3872494 3873125 13918 14549 CM091768.1 scaffold1517 99.64 True fake: not a misassembly (possible transposable element) 4253043 4254932 14550 16441 CM091768.1 scaffold1517 99.58 True fake: not a misassembly (possible transposable element) 3874156 3876648 16442 18976 CM091768.1 scaffold1517 98.15 True local misassembly 3876013 3884212 18977 27203 CM091768.1 scaffold1517 99.64 True CONTIG scaffold1517 27203 correct CONTIG scaffold1513 4145 unaligned CONTIG scaffold1518 4765 unaligned CONTIG scaffold1520 449 unaligned CONTIG scaffold1521 449 unaligned CONTIG scaffold1519 1901 unaligned CONTIG scaffold1523 1052 unaligned CONTIG scaffold1524 314 unaligned 8612513 8613060 548 1 CM091767.1 scaffold1525 99.64 True CONTIG scaffold1525 548 correct 10927662 10929106 1445 1 CM091765.1 scaffold1526 99.93 True inversion 10934070 10936195 2974 5127 CM091765.1 scaffold1526 98.7 True fake: scaffold gap size wrong estimation (local) 10936748 10940658 5690 9601 CM091765.1 scaffold1526 99.72 True relocation, scaffold gap is present, inconsistency = 16467 10918365 10920005 11517 9877 CM091765.1 scaffold1526 99.94 True inversion 10895661 10913988 11518 29969 CM091765.1 scaffold1526 99.46 True CONTIG scaffold1526 29970 misassembled CONTIG scaffold1527 713 unaligned CONTIG scaffold1528 585 unaligned CONTIG scaffold1529 420 unaligned CONTIG scaffold1530 348 unaligned CONTIG scaffold1531 4346 unaligned CONTIG scaffold1532 361 unaligned 5497414 5569589 1 72181 CM091758.1 scaffold1161 99.61 True local misassembly 5568500 5721992 72182 230424 CM091758.1 scaffold1161 99.31 True fake: scaffold gap size wrong estimation (local) 5722162 5820956 230587 331427 CM091758.1 scaffold1161 98.07 True fake: scaffold gap size wrong estimation (local) 5821248 5841742 332223 353042 CM091758.1 scaffold1161 99.22 True fake: scaffold gap size wrong estimation (local) 5862494 5893748 368911 400183 CM091758.1 scaffold1161 99.54 True fake: scaffold gap size wrong estimation (local) 5893913 5991684 401245 501341 CM091758.1 scaffold1161 99.13 True fake: scaffold gap size wrong estimation (local) 5992000 6166129 502014 683337 CM091758.1 scaffold1161 98.59 True fake: scaffold gap size wrong estimation (local) 6167006 6173990 684319 692848 CM091758.1 scaffold1161 99.19 True fake: scaffold gap size wrong estimation (local) 6174259 6314981 693519 836676 CM091758.1 scaffold1161 99.52 True local misassembly 6314086 6344535 836680 868313 CM091758.1 scaffold1161 97.88 True indel: indel (> 5bp) 6344576 6551197 868341 1076890 CM091758.1 scaffold1161 99.02 True fake: scaffold gap size wrong estimation (local) 6551363 6750309 1078400 1280636 CM091758.1 scaffold1161 98.77 True fake: scaffold gap size wrong estimation (local) 6750414 6789225 1281703 1321444 CM091758.1 scaffold1161 98.23 True local misassembly 6788293 6839904 1321445 1373039 CM091758.1 scaffold1161 98.7 True fake: not a misassembly (possible transposable element) 14322256 14323153 1373254 1374151 CM091752.1 scaffold1161 99.22 True fake: not a misassembly (possible transposable element) 6840304 6843116 1374193 1376977 CM091758.1 scaffold1161 95.7 True indel: indel (> 5bp) 6843213 6899006 1377086 1433813 CM091758.1 scaffold1161 99.07 True CONTIG scaffold1161 1433855 correct 15641390 15642090 279 978 CM091752.1 scaffold1534 98.43 True CONTIG scaffold1534 978 correct 3323770 3324463 1 694 CM091768.1 scaffold1535 99.86 True CONTIG scaffold1535 694 correct CONTIG scaffold1536 456 unaligned CONTIG scaffold1537 661 unaligned 18543334 18548563 5267 1 CM091751.1 scaffold1538 98.31 True fake: scaffold gap size wrong estimation (extensive) 18531818 18534367 8687 6137 CM091751.1 scaffold1538 99.49 True CONTIG scaffold1538 8984 correct 2882613 2887833 5358 127 CM091762.1 scaffold1539 99.18 True CONTIG scaffold1539 5358 correct 4614553 4618811 4259 1 CM091754.1 scaffold1540 100.0 True CONTIG scaffold1540 4259 correct CONTIG scaffold1533 9153 unaligned 4820630 4825806 2049 7235 CM091768.1 scaffold1541 99.54 True fake: scaffold gap size wrong estimation (local) 4825470 4826146 7857 8533 CM091768.1 scaffold1541 100.0 True CONTIG scaffold1541 8533 correct 1905 3825 1982 1 CM091760.1 scaffold1543 95.48 True CONTIG scaffold1543 1982 correct CONTIG scaffold1544 429 unaligned CONTIG scaffold1545 307 unaligned CONTIG scaffold1546 429 unaligned 6680480 6682471 2151 160 CM091767.1 scaffold1547 99.35 True indel: indel (<= 5bp) 6679901 6680479 2732 2154 CM091767.1 scaffold1547 99.31 True indel: indel (<= 5bp) 6678399 6679900 4238 2737 CM091767.1 scaffold1547 99.0 True indel: indel (<= 5bp) 6677482 6678397 5154 4239 CM091767.1 scaffold1547 98.25 True indel: indel (<= 5bp) 6675109 6677479 7525 5155 CM091767.1 scaffold1547 99.03 True local misassembly 6673842 6674589 9261 8514 CM091767.1 scaffold1547 98.66 True local misassembly 6672203 6673713 12185 10664 CM091767.1 scaffold1547 95.88 True CONTIG scaffold1547 12185 correct CONTIG scaffold1548 403 unaligned CONTIG scaffold1549 651 unaligned 6023548 6103574 81063 732 CM091762.1 scaffold1334 99.35 True indel: indel (> 5bp) 5930759 6023542 174650 81123 CM091762.1 scaffold1334 99.5 True indel: indel (> 5bp) 5690332 5930466 418774 174951 CM091762.1 scaffold1334 99.05 True local misassembly 5456206 5690043 656002 419424 CM091762.1 scaffold1334 99.3 True fake: scaffold gap size wrong estimation (local) 5454572 5456092 658308 656786 CM091762.1 scaffold1334 99.47 True local misassembly 4819877 5455086 1304983 658324 CM091762.1 scaffold1334 98.65 True local misassembly 4598290 4820476 1529921 1304984 CM091762.1 scaffold1334 99.17 True fake: scaffold gap size wrong estimation (local) 4597246 4597893 1531282 1530635 CM091762.1 scaffold1334 99.54 True CONTIG scaffold1334 1531282 correct CONTIG scaffold1551 407 unaligned CONTIG scaffold1542 521 unaligned 5334462 5338470 4010 1 CM091754.1 scaffold1550 99.55 True local misassembly 5316516 5336162 23687 4011 CM091754.1 scaffold1550 99.8 True local misassembly 5296986 5316420 43588 24149 CM091754.1 scaffold1550 99.91 True fake: not a misassembly (possible transposable element) 809914 810788 44463 43589 CM091752.1 scaffold1550 99.54 True fake: not a misassembly (possible transposable element) 5271967 5297115 69609 44464 CM091754.1 scaffold1550 99.95 True local misassembly 5262467 5271663 79965 70777 CM091754.1 scaffold1550 99.89 True CONTIG scaffold1550 79965 correct 11445388 11446239 1 867 CM091765.1 scaffold1553 97.01 True fake: scaffold gap size wrong estimation (local) 11447644 11449392 3045 4845 CM091765.1 scaffold1553 97.54 True fake: scaffold gap size wrong estimation (local) 11449057 11451854 5590 8388 CM091765.1 scaffold1553 99.93 True CONTIG scaffold1553 8388 correct CONTIG scaffold1555 382 unaligned 15236627 15237113 511 1 CM091752.1 scaffold1556 99.34 True CONTIG scaffold1556 511 correct 8241910 8245308 3363 1 CM091767.1 scaffold1557 98.85 True CONTIG scaffold1557 3363 correct CONTIG scaffold1558 958 unaligned CONTIG scaffold1559 789 unaligned 15521943 15529993 8092 1 CM091757.1 scaffold1554 99.26 True local misassembly 15516775 15521731 13544 8575 CM091757.1 scaffold1554 99.48 True indel: indel (> 5bp) 15512203 15516677 18079 13605 CM091757.1 scaffold1554 99.82 True fake: scaffold gap size wrong estimation (local) 15504012 15513310 27735 18421 CM091757.1 scaffold1554 99.34 True CONTIG scaffold1554 27735 correct CONTIG scaffold1560 339 unaligned CONTIG scaffold1561 447 unaligned 8799146 8801247 2366 245 CM091767.1 scaffold1562 97.11 True CONTIG scaffold1562 2366 correct CONTIG scaffold1564 442 unaligned CONTIG scaffold1563 539 unaligned CONTIG scaffold1565 734 unaligned CONTIG scaffold1567 398 unaligned CONTIG scaffold1568 340 unaligned CONTIG scaffold1569 392 unaligned CONTIG scaffold1570 5322 unaligned CONTIG scaffold1571 412 unaligned CONTIG scaffold1572 3979 unaligned 3359458 3360974 1 1517 CM091752.1 scaffold1566 99.87 True indel: indel (> 5bp) 3361173 3365616 1763 7286 CM091752.1 scaffold1566 99.0 True CONTIG scaffold1566 12928 correct 1800160 1802513 2374 1 CM091764.1 scaffold1574 99.07 True CONTIG scaffold1574 2374 correct CONTIG scaffold1552 1065 unaligned CONTIG scaffold1573 660 unaligned 2424862 2425399 1 538 CM091760.1 scaffold1576 99.63 True fake: scaffold gap size wrong estimation (local) 2427188 2433498 2146 8450 CM091760.1 scaffold1576 99.75 True fake: scaffold gap size wrong estimation (local) 2433620 2436728 8575 11710 CM091760.1 scaffold1576 98.81 True CONTIG scaffold1576 11710 correct CONTIG scaffold1578 406 unaligned 7902760 7912781 1 10068 CM091767.1 scaffold1575 99.51 True local misassembly 7911107 7912780 10116 11790 CM091767.1 scaffold1575 99.88 True indel: stretch of mismatches 7912816 7919261 11826 18315 CM091767.1 scaffold1575 99.66 True CONTIG scaffold1575 18315 correct 4025738 4028841 1 3111 CM091752.1 scaffold1577 99.52 True fake: scaffold gap size wrong estimation (local) 4028950 4030079 3203 4355 CM091752.1 scaffold1577 98.65 True indel: indel (<= 5bp) 4030259 4034723 4539 9002 CM091752.1 scaffold1577 99.62 True CONTIG scaffold1577 9002 correct CONTIG scaffold1579 361 unaligned 10951142 10991313 1 40804 CM091766.1 scaffold1491 99.24 True fake: scaffold gap size wrong estimation (local) 10991540 11015968 41039 66397 CM091766.1 scaffold1491 95.99 True CONTIG scaffold1491 66449 correct CONTIG scaffold1580 4233 unaligned CONTIG scaffold1581 396 unaligned 6384283 6386677 2391 1 CM091760.1 scaffold1585 99.46 True CONTIG scaffold1585 2391 correct CONTIG scaffold1584 462 unaligned 4780355 4784427 4676 604 CM091754.1 scaffold1587 99.98 True fake: scaffold gap size wrong estimation (local) 4774857 4780044 10272 5026 CM091754.1 scaffold1587 98.74 True local misassembly 4773852 4775385 11808 10275 CM091754.1 scaffold1587 99.87 True CONTIG scaffold1587 11808 correct CONTIG scaffold1588 440 unaligned 9252131 9253260 604 1733 CM091765.1 scaffold1522 99.47 True indel: indel (> 5bp) 9253261 9254075 1763 2577 CM091765.1 scaffold1522 99.75 True fake: scaffold gap size wrong estimation (local) 9254635 9264806 3379 13559 CM091765.1 scaffold1522 98.96 True local misassembly 9264314 9300664 13570 50704 CM091765.1 scaffold1522 99.41 True fake: not a misassembly (possible transposable element) 9300665 9301751 51793 50705 CM091765.1 scaffold1522 99.38 True fake: not a misassembly (possible transposable element) 9300802 9397403 51794 151000 CM091765.1 scaffold1522 98.57 True fake: scaffold gap size wrong estimation (local) 9397738 9406218 151666 160142 CM091765.1 scaffold1522 99.52 True indel: stretch of mismatches 9406279 9433991 160203 187950 CM091765.1 scaffold1522 99.64 True fake: not a misassembly (possible transposable element) 9433302 9433991 188710 188021 CM091765.1 scaffold1522 100.0 True fake: not a misassembly (possible transposable element) 9434180 9473598 188711 228838 CM091765.1 scaffold1522 97.93 True CONTIG scaffold1522 229007 correct CONTIG scaffold1590 339 unaligned 3570811 3575903 5246 1 CM091768.1 scaffold1591 97.25 True relocation, inconsistency = 152779 3730065 3740513 6629 17082 CM091768.1 scaffold1591 99.77 True local misassembly 3734058 3735571 17083 18596 CM091768.1 scaffold1591 100.0 True CONTIG scaffold1591 18596 misassembled CONTIG scaffold1592 658 unaligned CONTIG scaffold1593 258 unaligned 194843 314791 131540 46 CM091751.1 scaffold1512 97.99 True CONTIG scaffold1512 131540 correct CONTIG scaffold1595 450 unaligned CONTIG scaffold1596 1449 unaligned 4301067 4302139 1 1077 CM091768.1 scaffold1597 98.61 True CONTIG scaffold1597 1077 correct 2068421 2076147 1 7541 CM091752.1 scaffold1350 95.82 True local misassembly 2077050 2168830 8292 103013 CM091752.1 scaffold1350 99.26 True local misassembly 2170793 2217765 103898 152465 CM091752.1 scaffold1350 99.32 True indel: indel (<= 5bp) 2217829 2226000 152534 160664 CM091752.1 scaffold1350 98.69 True fake: scaffold gap size wrong estimation (local) 2226382 2317039 161427 253434 CM091752.1 scaffold1350 99.12 True fake: scaffold gap size wrong estimation (local) 2317233 2331295 253524 267923 CM091752.1 scaffold1350 99.35 True fake: scaffold gap size wrong estimation (local) 2331401 2337020 268108 273760 CM091752.1 scaffold1350 99.54 True fake: scaffold gap size wrong estimation (local) 2338102 2391211 274791 329475 CM091752.1 scaffold1350 99.17 True local misassembly 2390128 2437425 329476 377229 CM091752.1 scaffold1350 98.28 True local misassembly 2436824 2741950 377230 693973 CM091752.1 scaffold1350 99.16 True fake: scaffold gap size wrong estimation (local) 2742518 2759936 694894 714429 CM091752.1 scaffold1350 99.51 True fake: scaffold gap size wrong estimation (local) 2760018 2770430 715968 727119 CM091752.1 scaffold1350 99.13 True local misassembly 2770517 2849153 727563 811507 CM091752.1 scaffold1350 98.56 True fake: scaffold gap size wrong estimation (local) 2850438 2856181 812576 818311 CM091752.1 scaffold1350 98.92 True CONTIG scaffold1350 820019 correct 8617772 8623633 1 5886 CM091767.1 scaffold1594 99.47 True indel: indel (> 5bp) 8623795 8628957 6068 11271 CM091767.1 scaffold1594 99.1 True fake: scaffold gap size wrong estimation (local) 8631844 8638376 15277 21891 CM091767.1 scaffold1594 98.85 True CONTIG scaffold1594 23027 correct CONTIG scaffold1600 351 unaligned CONTIG scaffold1601 419 unaligned CONTIG scaffold1598 496 unaligned CONTIG scaffold1603 539 unaligned CONTIG scaffold1604 529 unaligned 9148524 9149236 1 713 CM091763.1 scaffold1605 99.72 True CONTIG scaffold1605 713 correct CONTIG scaffold1599 584 unaligned CONTIG scaffold1602 672 unaligned CONTIG scaffold1608 441 unaligned 8604022 8604932 929 1 CM091767.1 scaffold1606 97.95 True CONTIG scaffold1606 929 correct 4473898 4477629 3735 1 CM091754.1 scaffold1607 99.73 True local misassembly 4471982 4473162 7433 6253 CM091754.1 scaffold1607 99.92 True fake: scaffold gap size wrong estimation (local) 4468053 4471767 12453 8738 CM091754.1 scaffold1607 99.97 True CONTIG scaffold1607 12528 correct CONTIG scaffold1610 4231 unaligned 15582495 15587719 1 5327 CM091757.1 scaffold1612 97.75 True CONTIG scaffold1612 5327 correct 16319955 16320981 1 1027 CM091752.1 scaffold1613 99.71 True CONTIG scaffold1613 1099 correct CONTIG scaffold1609 1390 unaligned 15474136 15474638 76 578 CM091751.1 scaffold1614 99.8 True CONTIG scaffold1614 4159 correct CONTIG scaffold1616 354 unaligned CONTIG scaffold1617 437 unaligned 121557 122192 1 636 CM091764.1 scaffold1618 99.69 True CONTIG scaffold1618 636 correct 11289489 11295951 1 6521 CM091766.1 scaffold1619 99.06 True indel: indel (> 5bp) 11296187 11297714 6746 8337 CM091766.1 scaffold1619 95.78 True CONTIG scaffold1619 8337 correct 7891844 7893611 1 1768 CM091767.1 scaffold1620 99.89 True fake: scaffold gap size wrong estimation (local) 7893604 7898601 2373 7370 CM091767.1 scaffold1620 99.96 True inversion 7882345 7886866 11894 7371 CM091767.1 scaffold1620 99.85 True CONTIG scaffold1620 11910 misassembled 221757 222348 598 7 CM091752.1 scaffold1583 99.49 True translocation 2782522 2917026 706 135258 CM091753.1 scaffold1583 99.72 True local misassembly 2916211 2958296 135259 177277 CM091753.1 scaffold1583 98.37 True indel: indel (> 5bp) 2958356 2968431 177343 187452 CM091753.1 scaffold1583 99.44 True fake: scaffold gap size wrong estimation (local) 2968519 3116158 188181 336058 CM091753.1 scaffold1583 99.52 True indel: indel (> 5bp) 3116230 3313832 336113 530976 CM091753.1 scaffold1583 97.23 True local misassembly 3313000 3321406 531077 539492 CM091753.1 scaffold1583 99.63 True CONTIG scaffold1583 539492 misassembled CONTIG scaffold1615 789 unaligned CONTIG scaffold1623 446 unaligned CONTIG scaffold1611 1474 unaligned 4580996 4592874 1 11918 CM091768.1 scaffold1625 99.64 True CONTIG scaffold1625 11918 correct CONTIG scaffold1621 1541 unaligned CONTIG scaffold1627 443 unaligned CONTIG scaffold1624 908 unaligned CONTIG scaffold1626 327 unaligned CONTIG scaffold1628 429 unaligned CONTIG scaffold1631 1305 unaligned CONTIG scaffold1632 383 unaligned CONTIG scaffold1629 375 unaligned CONTIG scaffold1630 539 unaligned 9990802 10033063 408 42663 CM091765.1 scaffold1589 99.95 True local misassembly 10033176 10040415 43089 50328 CM091765.1 scaffold1589 99.9 True local misassembly 10041364 10043830 51715 54182 CM091765.1 scaffold1589 99.92 True local misassembly 10041571 10044384 54183 56997 CM091765.1 scaffold1589 99.96 True local misassembly 10043769 10044397 56998 57626 CM091765.1 scaffold1589 100.0 True fake: scaffold gap size wrong estimation (local) 10044568 10066797 60014 82263 CM091765.1 scaffold1589 99.86 True relocation, scaffold gap is present, inconsistency = 28475 10096184 10098936 85927 83175 CM091765.1 scaffold1589 100.0 True CONTIG scaffold1589 85927 misassembled CONTIG scaffold1633 416 unaligned CONTIG scaffold1637 408 unaligned CONTIG scaffold1638 417 unaligned CONTIG scaffold1636 1177 unaligned CONTIG scaffold1640 465 unaligned CONTIG scaffold1635 4651 unaligned CONTIG scaffold1639 855 unaligned 15660365 15661137 1 773 CM091757.1 scaffold1641 100.0 True fake: scaffold gap size wrong estimation (local) 15661243 15662119 1426 2303 CM091757.1 scaffold1641 99.32 True fake: scaffold gap size wrong estimation (local) 15662236 15679903 2705 20517 CM091757.1 scaffold1641 99.11 True fake: scaffold gap size wrong estimation (local) 15680182 15688055 21023 29444 CM091757.1 scaffold1641 99.91 True CONTIG scaffold1641 29444 correct CONTIG scaffold1643 424 unaligned 2058522 2062548 5600 1574 CM091764.1 scaffold1642 100.0 True fake: scaffold gap size wrong estimation (local) 2053735 2058409 10688 6015 CM091764.1 scaffold1642 99.89 True fake: scaffold gap size wrong estimation (local) 2048870 2054158 17131 11838 CM091764.1 scaffold1642 99.75 True fake: scaffold gap size wrong estimation (local) 2047967 2048680 19292 18579 CM091764.1 scaffold1642 99.86 True local misassembly 2047014 2047556 19835 19293 CM091764.1 scaffold1642 100.0 True CONTIG scaffold1642 19885 correct CONTIG scaffold1645 710 unaligned CONTIG scaffold1647 393 unaligned 2863412 2864982 1572 1 CM091762.1 scaffold1648 99.94 True CONTIG scaffold1648 1572 correct CONTIG scaffold1649 412 unaligned 5724526 5727701 3200 1 CM091754.1 scaffold1582 99.19 True indel: indel (> 5bp) 5715359 5724496 12369 3240 CM091754.1 scaffold1582 99.89 True local misassembly 5713329 5717820 16862 12370 CM091754.1 scaffold1582 99.58 True fake: scaffold gap size wrong estimation (local) 5703117 5713409 27870 17383 CM091754.1 scaffold1582 98.91 True local misassembly 5568944 5702990 161415 28411 CM091754.1 scaffold1582 99.13 True local misassembly 5562661 5569689 168479 161426 CM091754.1 scaffold1582 99.25 True local misassembly 5560432 5562450 171185 169129 CM091754.1 scaffold1582 97.28 True local misassembly 5557969 5561520 174738 171186 CM091754.1 scaffold1582 99.61 True local misassembly 5557027 5558705 176447 174739 CM091754.1 scaffold1582 98.01 True indel: indel (> 5bp) 5555861 5556936 177691 176616 CM091754.1 scaffold1582 98.61 True local misassembly 5555624 5557086 179154 177692 CM091754.1 scaffold1582 99.52 True local misassembly 5549965 5555712 185578 179821 CM091754.1 scaffold1582 99.74 True local misassembly 5548553 5551046 188072 185579 CM091754.1 scaffold1582 99.92 True local misassembly 5537682 5549251 199730 188073 CM091754.1 scaffold1582 99.11 True local misassembly 5535889 5537741 202544 200691 CM091754.1 scaffold1582 99.19 True indel: indel (<= 5bp) 5388634 5535841 349618 202593 CM091754.1 scaffold1582 97.55 True indel: indel (> 5bp) 5350047 5388555 388820 349721 CM091754.1 scaffold1582 99.96 True local misassembly 5349061 5350264 390672 389469 CM091754.1 scaffold1582 99.58 True local misassembly 5348704 5349746 391716 390673 CM091754.1 scaffold1582 99.23 True CONTIG scaffold1582 391716 correct CONTIG scaffold1651 383 unaligned CONTIG scaffold1652 412 unaligned CONTIG scaffold1653 412 unaligned CONTIG scaffold1654 306 unaligned 6382968 6383856 1 883 CM091760.1 scaffold1655 98.54 True CONTIG scaffold1655 883 correct CONTIG scaffold1656 407 unaligned CONTIG scaffold1644 4873 unaligned CONTIG scaffold1650 831 unaligned CONTIG scaffold1659 345 unaligned 16431954 16433162 1238 1 CM091752.1 scaffold1658 96.06 True fake: scaffold gap size wrong estimation (local) 16430248 16431414 4212 3046 CM091752.1 scaffold1658 99.74 True CONTIG scaffold1658 4212 correct 15320755 15324048 1 3323 CM091752.1 scaffold1657 97.6 True local misassembly 15325339 15326109 3334 4104 CM091752.1 scaffold1657 99.48 True CONTIG scaffold1657 4104 correct 2834655 2835362 736 1 CM091751.1 scaffold1661 95.38 True CONTIG scaffold1661 736 correct CONTIG scaffold1660 16854 unaligned CONTIG scaffold1664 440 unaligned 7742199 7744086 1881 1 CM091767.1 scaffold1663 99.52 True fake: scaffold gap size wrong estimation (local) 7739386 7740290 3853 2925 CM091767.1 scaffold1663 97.09 True indel: indel (> 5bp) 7738777 7739335 4474 3916 CM091767.1 scaffold1663 100.0 True CONTIG scaffold1663 4474 correct 13506521 13520271 13754 5 CM091758.1 scaffold1665 99.91 True CONTIG scaffold1665 13754 correct 1447780 1448382 603 1 CM091764.1 scaffold1667 99.67 True CONTIG scaffold1667 603 correct CONTIG scaffold1668 292 unaligned CONTIG scaffold1634 675 unaligned 17288925 17291295 2370 1 CM091752.1 scaffold1669 99.11 True CONTIG scaffold1669 2370 correct CONTIG scaffold1646 1436 unaligned 17261087 17284546 1 23818 CM091751.1 scaffold1662 98.79 True indel: indel (> 5bp) 17284595 17286920 23882 26209 CM091751.1 scaffold1662 99.91 True CONTIG scaffold1662 26209 correct CONTIG scaffold1672 379 unaligned CONTIG scaffold1674 384 unaligned 9160141 9160901 761 1 CM091767.1 scaffold1675 99.47 True CONTIG scaffold1675 761 correct CONTIG scaffold1676 442 unaligned 16379587 16380357 771 1 CM091752.1 scaffold1673 98.83 True CONTIG scaffold1673 771 correct CONTIG scaffold1670 369 unaligned CONTIG scaffold1678 220 unaligned CONTIG scaffold1671 356 unaligned 87517 88292 1 777 CM091752.1 scaffold1681 99.61 True CONTIG scaffold1681 777 correct CONTIG scaffold1682 351 unaligned CONTIG scaffold1677 382 unaligned CONTIG scaffold1666 412 unaligned CONTIG scaffold1684 492 unaligned CONTIG scaffold1685 372 unaligned 15312379 15313005 1 622 CM091752.1 scaffold1687 98.25 True CONTIG scaffold1687 681 correct 11135275 11196282 62715 545 CM091766.1 scaffold1683 99.52 True fake: scaffold gap size wrong estimation (local) 11131449 11134959 67347 63837 CM091766.1 scaffold1683 100.0 True CONTIG scaffold1683 67359 correct 9271392 9281586 799 11001 CM091767.1 scaffold1688 99.54 True local misassembly 9280217 9281295 11002 12080 CM091767.1 scaffold1688 99.72 True fake: scaffold gap size wrong estimation (local) 9280960 9283152 12774 15049 CM091767.1 scaffold1688 95.18 True CONTIG scaffold1688 15049 correct CONTIG scaffold1689 4174 unaligned CONTIG scaffold1680 400 unaligned CONTIG scaffold1690 443 unaligned CONTIG scaffold1691 460 unaligned CONTIG scaffold1693 1418 unaligned CONTIG scaffold1692 984 unaligned CONTIG scaffold1696 437 unaligned CONTIG scaffold1697 746 unaligned 7968185 7981569 13383 1 CM091767.1 scaffold1695 99.95 True CONTIG scaffold1695 13383 correct 63592 64700 205 1314 CM091763.1 scaffold1699 99.28 True CONTIG scaffold1699 1314 correct CONTIG scaffold1679 1305 unaligned 4267922 4268532 594 1 CM091768.1 scaffold1700 96.55 True CONTIG scaffold1700 594 correct CONTIG scaffold1702 374 unaligned CONTIG scaffold1703 480 unaligned 5070721 5079080 1 8403 CM091768.1 scaffold1698 99.31 True CONTIG scaffold1698 8487 correct CONTIG scaffold1705 394 unaligned 9397978 9399215 1 1236 CM091752.1 scaffold1704 99.76 True CONTIG scaffold1704 1494 correct CONTIG scaffold1701 282 unaligned CONTIG scaffold1707 369 unaligned CONTIG scaffold1708 835 unaligned 15645492 15652820 1 7336 CM091757.1 scaffold1706 99.8 True CONTIG scaffold1706 7336 correct 3665052 3665654 1 603 CM091768.1 scaffold1711 100.0 True CONTIG scaffold1711 603 correct CONTIG scaffold1694 797 unaligned CONTIG scaffold1712 792 unaligned CONTIG scaffold1710 333 unaligned CONTIG scaffold1715 1470 unaligned CONTIG scaffold1686 443 unaligned CONTIG scaffold1709 125919 unaligned 9181289 9182678 1 1390 CM091767.1 scaffold1714 100.0 True fake: scaffold gap size wrong estimation (local) 9183234 9185372 2395 4540 CM091767.1 scaffold1714 99.49 True fake: scaffold gap size wrong estimation (local) 9186403 9189297 6617 10341 CM091767.1 scaffold1714 99.58 True CONTIG scaffold1714 10341 correct 9193795 9210085 1 16777 CM091767.1 scaffold1716 96.99 True CONTIG scaffold1716 16777 correct 95081 96100 1020 1 CM091763.1 scaffold1718 99.22 True fake: scaffold gap size wrong estimation (local) 92401 94054 4064 2411 CM091763.1 scaffold1718 100.0 True CONTIG scaffold1718 4064 correct CONTIG scaffold1721 460 unaligned CONTIG scaffold1717 678 unaligned CONTIG scaffold1723 397 unaligned 1425021 1425718 1 698 CM091755.1 scaffold1720 99.71 True CONTIG scaffold1720 2137 correct_unaligned CONTIG scaffold1725 285 unaligned 3281031 3287264 6250 1 CM091757.1 scaffold1726 98.94 True CONTIG scaffold1726 6250 correct CONTIG scaffold1722 552 unaligned CONTIG scaffold1728 396 unaligned 1861606 1867745 1 6839 CM091764.1 scaffold1729 99.87 True CONTIG scaffold1729 6839 correct CONTIG scaffold1730 339 unaligned CONTIG scaffold1731 448 unaligned CONTIG scaffold1727 3598 unaligned CONTIG scaffold1733 1086 unaligned CONTIG scaffold1734 474 unaligned CONTIG scaffold1724 1207 unaligned 17043898 17046974 1 3197 CM091752.1 scaffold1736 96.12 True fake: scaffold gap size wrong estimation (local) 17047572 17048536 4389 5354 CM091752.1 scaffold1736 99.69 True CONTIG scaffold1736 5354 correct CONTIG scaffold1735 1311 unaligned CONTIG scaffold1738 479 unaligned 45532 46333 802 1 CM091753.1 scaffold1739 100.0 True CONTIG scaffold1739 802 correct CONTIG scaffold1737 4165 unaligned 1782925 1788097 1 5188 CM091764.1 scaffold1741 99.88 True CONTIG scaffold1741 5188 correct CONTIG scaffold1742 432 unaligned CONTIG scaffold1732 965 unaligned CONTIG scaffold1744 514 unaligned CONTIG scaffold1745 403 unaligned CONTIG scaffold1740 653 unaligned CONTIG scaffold1743 6832 unaligned 1872898 1873996 1090 1 CM091764.1 scaffold1748 98.45 True CONTIG scaffold1748 1090 correct CONTIG scaffold1749 396 unaligned 3753018 3753589 1034 463 CM091768.1 scaffold1750 99.13 True CONTIG scaffold1750 1108 correct CONTIG scaffold1751 311 unaligned CONTIG scaffold1752 1085 unaligned CONTIG scaffold1753 405 unaligned CONTIG scaffold1754 398 unaligned CONTIG scaffold1746 989 unaligned CONTIG scaffold1756 377 unaligned CONTIG scaffold1757 359 unaligned CONTIG scaffold1758 669 unaligned 3654162 3654804 643 1 CM091768.1 scaffold1759 99.53 True CONTIG scaffold1759 643 correct 8573325 8586125 1 12802 CM091767.1 scaffold1760 99.95 True fake: scaffold gap size wrong estimation (local) 8586676 8594315 13096 20774 CM091767.1 scaffold1760 99.03 True CONTIG scaffold1760 20774 correct CONTIG scaffold1755 497 unaligned 15572042 15572564 523 1 CM091752.1 scaffold1762 97.13 True CONTIG scaffold1762 1083 correct_unaligned CONTIG scaffold1763 618 unaligned CONTIG scaffold1764 453 unaligned CONTIG scaffold1761 658 unaligned CONTIG scaffold1765 718 unaligned CONTIG scaffold1767 416 unaligned CONTIG scaffold1766 315 unaligned CONTIG scaffold1769 620 unaligned CONTIG scaffold1770 403 unaligned CONTIG scaffold1771 432 unaligned 8431468 8434560 3093 1 CM091760.1 scaffold1622 98.6 True local misassembly 8338177 8433021 97935 3094 CM091760.1 scaffold1622 99.6 True fake: scaffold gap size wrong estimation (local) 8296909 8338087 143218 99075 CM091760.1 scaffold1622 98.91 True fake: scaffold gap size wrong estimation (local) 8292437 8297033 148500 144072 CM091760.1 scaffold1622 95.66 True indel: indel (> 5bp) 8216218 8292343 226427 148547 CM091760.1 scaffold1622 99.32 True indel: indel (<= 5bp) 7892685 8216212 554197 226435 CM091760.1 scaffold1622 99.26 True local misassembly 7859042 7890828 587193 555410 CM091760.1 scaffold1622 99.48 True fake: scaffold gap size wrong estimation (local) 7843906 7858889 602804 587821 CM091760.1 scaffold1622 99.7 True indel: indel (> 5bp) 7731732 7843859 716963 602904 CM091760.1 scaffold1622 99.02 True indel: indel (> 5bp) 7669581 7731545 780981 717162 CM091760.1 scaffold1622 99.11 True CONTIG scaffold1622 780981 correct 5999 7032 1060 1 CM091753.1 scaffold1773 96.98 True CONTIG scaffold1773 1060 correct 11463441 11464230 1 790 CM091765.1 scaffold1774 100.0 True CONTIG scaffold1774 790 correct CONTIG scaffold1775 387 unaligned CONTIG scaffold1776 449 unaligned 3619723 3620494 772 1 CM091768.1 scaffold1777 99.61 True CONTIG scaffold1777 772 correct 16235504 16236016 1 514 CM091752.1 scaffold1778 98.44 True CONTIG scaffold1778 514 correct 15368269 15369387 1147 1 CM091752.1 scaffold1779 97.47 True CONTIG scaffold1779 1147 correct CONTIG scaffold1780 657 unaligned 3738008 3739143 1012 2147 CM091768.1 scaffold1772 99.74 True relocation, inconsistency = 176221 3526931 3561786 37093 2148 CM091768.1 scaffold1772 99.59 True indel: indel (> 5bp) 3505157 3526885 58830 37123 CM091768.1 scaffold1772 99.61 True local misassembly 3503317 3504236 61194 60275 CM091768.1 scaffold1772 99.02 True indel: indel (> 5bp) 3502069 3503316 62471 61224 CM091768.1 scaffold1772 97.84 True fake: scaffold gap size wrong estimation (local) 3500493 3501820 64066 62739 CM091768.1 scaffold1772 98.8 True indel: indel (<= 5bp) 3499611 3500492 64953 64072 CM091768.1 scaffold1772 98.53 True indel: indel (<= 5bp) 3498247 3499610 66318 64955 CM091768.1 scaffold1772 99.12 True fake: scaffold gap size wrong estimation (local) 3480016 3497605 85076 67491 CM091768.1 scaffold1772 98.94 True CONTIG scaffold1772 85076 misassembled 5376786 5396795 1 20046 CM091768.1 scaffold1782 99.77 True fake: scaffold gap size wrong estimation (local) 5397363 5399251 21448 23336 CM091768.1 scaffold1782 100.0 True fake: scaffold gap size wrong estimation (local) 5399167 5402210 25095 28138 CM091768.1 scaffold1782 99.97 True CONTIG scaffold1782 28138 correct CONTIG scaffold1783 413 unaligned 17205003 17205778 1 776 CM091752.1 scaffold1784 99.23 True unknown 17206841 17208582 3527 5323 CM091752.1 scaffold1784 96.77 True unknown CONTIG scaffold1784 9643 mis_unaligned CONTIG scaffold1781 534 unaligned CONTIG scaffold1785 1176 unaligned CONTIG scaffold1787 283 unaligned CONTIG scaffold1788 446 unaligned CONTIG scaffold1789 380 unaligned CONTIG scaffold1790 391 unaligned CONTIG scaffold1791 426 unaligned CONTIG scaffold1792 890 unaligned CONTIG scaffold1786 6059 unaligned 15696179 15696841 664 1 CM091752.1 scaffold1794 99.85 True CONTIG scaffold1794 664 correct 10243500 10244750 138 1387 CM091765.1 scaffold1747 99.68 True inversion 10247028 10259969 19844 6905 CM091765.1 scaffold1747 99.81 True inversion 10263961 10284945 19845 40902 CM091765.1 scaffold1747 99.51 True local misassembly 10291409 10291920 41312 41823 CM091765.1 scaffold1747 99.61 True local misassembly 10292075 10292975 41824 42724 CM091765.1 scaffold1747 99.56 True fake: scaffold gap size wrong estimation (local) 10292976 10293551 42748 43323 CM091765.1 scaffold1747 99.65 True CONTIG scaffold1747 43344 misassembled 16344072 16344823 1 754 CM091752.1 scaffold1796 98.67 True CONTIG scaffold1796 754 correct CONTIG scaffold1797 383 unaligned CONTIG scaffold1793 433 unaligned 16146732 16147234 2796 2294 CM091752.1 scaffold1799 95.43 True CONTIG scaffold1799 4205 correct_unaligned CONTIG scaffold1800 368 unaligned 18910873 18915864 4991 1 CM091751.1 scaffold1798 99.54 True local misassembly 18872470 18911448 44339 4992 CM091751.1 scaffold1798 98.65 True fake: scaffold gap size wrong estimation (local) 18872023 18872860 45670 44831 CM091751.1 scaffold1798 98.69 True CONTIG scaffold1798 45670 correct 17129191 17129907 717 1 CM091752.1 scaffold1802 99.86 True CONTIG scaffold1802 717 correct 3969250 3971041 1 1826 CM091767.1 scaffold1801 95.97 True CONTIG scaffold1801 1826 correct CONTIG scaffold1804 410 unaligned CONTIG scaffold1795 545 unaligned CONTIG scaffold1805 285 unaligned CONTIG scaffold1807 422 unaligned 7441776 7442291 15197 14686 CM091754.1 scaffold1806 97.67 True CONTIG scaffold1806 21487 correct_unaligned CONTIG scaffold1809 449 unaligned 10969661 10972047 2361 1 CM091765.1 scaffold1810 98.25 True CONTIG scaffold1810 2361 correct CONTIG scaffold1808 4537 unaligned 8595002 8595990 1 989 CM091767.1 scaffold1811 99.9 True CONTIG scaffold1811 989 correct 15655284 15655866 3398 2816 CM091752.1 scaffold1813 99.66 True CONTIG scaffold1813 3398 correct 5836250 5865598 29353 39 CM091751.1 scaffold1713 99.1 True indel: indel (> 5bp) 5825741 5836020 40078 29560 CM091751.1 scaffold1713 97.35 True local misassembly 5628259 5826794 239487 40112 CM091751.1 scaffold1713 98.77 True indel: indel (> 5bp) 5577858 5628123 289866 239641 CM091751.1 scaffold1713 99.3 True fake: scaffold gap size wrong estimation (local) 5513604 5577635 356753 292645 CM091751.1 scaffold1713 99.41 True indel: indel (> 5bp) 5416752 5513512 455218 356825 CM091751.1 scaffold1713 97.92 True CONTIG scaffold1713 455269 correct 6666215 6666735 1 521 CM091768.1 scaffold1815 100.0 True CONTIG scaffold1815 812 correct CONTIG scaffold1812 322 unaligned 4346298 4348067 1 1770 CM091754.1 scaffold1814 100.0 True CONTIG scaffold1814 1770 correct CONTIG scaffold1818 404 unaligned CONTIG scaffold1817 429 unaligned CONTIG scaffold1819 381 unaligned 8058883 8060200 497 1814 CM091767.1 scaffold1821 99.62 True relocation, inconsistency = -35188 8025056 8027765 1858 4568 CM091767.1 scaffold1821 99.96 True CONTIG scaffold1821 4568 misassembled 16181610 16182315 1087 382 CM091757.1 scaffold1822 99.43 True CONTIG scaffold1822 2009 correct_unaligned 3373816 3374781 991 1 CM091768.1 scaffold1823 97.07 True CONTIG scaffold1823 991 correct CONTIG scaffold1803 622 unaligned CONTIG scaffold1816 347 unaligned 54001 54537 1 542 CM091753.1 scaffold1825 100.0 True indel: indel (> 5bp) 54576 58573 592 4597 CM091753.1 scaffold1825 99.68 True CONTIG scaffold1825 4597 correct 83446 85372 2570 639 CM091764.1 scaffold1826 98.76 True fake: scaffold gap size wrong estimation (local) 82621 83323 4822 4120 CM091764.1 scaffold1826 100.0 True CONTIG scaffold1826 4822 correct CONTIG scaffold1820 1104 unaligned CONTIG scaffold1827 683 unaligned CONTIG scaffold1829 335 unaligned CONTIG scaffold1830 431 unaligned 1352641 1353642 1003 1 CM091764.1 scaffold1832 99.7 True CONTIG scaffold1832 1003 correct CONTIG scaffold1831 359 unaligned CONTIG scaffold1833 375 unaligned CONTIG scaffold1835 430 unaligned CONTIG scaffold1834 530 unaligned CONTIG scaffold1837 631 unaligned CONTIG scaffold1828 584 unaligned 14241174 14241714 59 599 CM091755.1 scaffold1836 98.34 True CONTIG scaffold1836 1230 correct_unaligned CONTIG scaffold1838 506 unaligned CONTIG scaffold1840 490 unaligned CONTIG scaffold1839 409 unaligned CONTIG scaffold1843 357 unaligned 15565677 15566234 1 558 CM091757.1 scaffold1842 100.0 True indel: indel (> 5bp) 15566585 15567423 924 1762 CM091757.1 scaffold1842 100.0 True local misassembly 15567810 15568707 2270 3167 CM091757.1 scaffold1842 99.55 True local misassembly 15569039 15570149 4099 5209 CM091757.1 scaffold1842 99.73 True CONTIG scaffold1842 5209 correct CONTIG scaffold1844 336 unaligned CONTIG scaffold1845 479 unaligned CONTIG scaffold1846 439 unaligned CONTIG scaffold1847 409 unaligned CONTIG scaffold1849 421 unaligned 1699300 1700373 1 1085 CM091764.1 scaffold1850 96.59 True fake: scaffold gap size wrong estimation (local) 1700711 1704724 2007 6020 CM091764.1 scaffold1850 99.95 True local misassembly 1703537 1704126 6021 6610 CM091764.1 scaffold1850 100.0 True CONTIG scaffold1850 6610 correct CONTIG scaffold1848 382 unaligned CONTIG scaffold1824 3770 unaligned CONTIG scaffold1841 751 unaligned CONTIG scaffold1854 607 unaligned CONTIG scaffold1855 412 unaligned 2931403 2933802 2398 1 CM091768.1 scaffold1852 99.5 True local misassembly 2921968 2932091 12919 2506 CM091768.1 scaffold1852 97.64 True indel: indel (> 5bp) 2919979 2921820 14880 13039 CM091768.1 scaffold1852 99.35 True fake: scaffold gap size wrong estimation (local) 2917339 2918884 17410 15849 CM091768.1 scaffold1852 97.7 True CONTIG scaffold1852 17410 correct 15798949 15799651 59 765 CM091752.1 scaffold1857 99.15 True CONTIG scaffold1857 765 correct 15532162 15533482 1 1321 CM091757.1 scaffold1858 99.92 True CONTIG scaffold1858 1321 correct 46811 50293 3623 1 CM091768.1 scaffold1853 99.3 True fake: scaffold gap size wrong estimation (local) 44899 45446 6837 6290 CM091768.1 scaffold1853 99.82 True fake: scaffold gap size wrong estimation (local) 41327 42826 10345 8819 CM091768.1 scaffold1853 98.93 True CONTIG scaffold1853 11578 correct 7514885 7516918 1 2030 CM091764.1 scaffold1856 99.36 True fake: scaffold gap size wrong estimation (local) 7517057 7521393 2189 6531 CM091764.1 scaffold1856 99.7 True CONTIG scaffold1856 6531 correct CONTIG scaffold1861 392 unaligned CONTIG scaffold1860 552 unaligned CONTIG scaffold1863 374 unaligned CONTIG scaffold1859 351 unaligned 4308100 4309085 1008 1 CM091768.1 scaffold1865 96.14 True CONTIG scaffold1865 1008 correct CONTIG scaffold1866 378 unaligned CONTIG scaffold1867 466 unaligned CONTIG scaffold1864 423 unaligned CONTIG scaffold1851 1444 unaligned 3173012 3176645 5087 1384 CM091752.1 scaffold1870 98.08 True CONTIG scaffold1870 5087 correct CONTIG scaffold1868 700 unaligned 16733858 16734394 1 537 CM091752.1 scaffold1871 100.0 True indel: indel (> 5bp) 16734461 16735001 642 1183 CM091752.1 scaffold1871 99.45 True fake: scaffold gap size wrong estimation (local) 16735277 16736133 1491 2367 CM091752.1 scaffold1871 97.15 True CONTIG scaffold1871 2367 correct CONTIG scaffold1873 397 unaligned CONTIG scaffold1874 451 unaligned CONTIG scaffold1875 451 unaligned CONTIG scaffold1872 376 unaligned CONTIG scaffold1877 407 unaligned 15232367 15233059 694 1 CM091752.1 scaffold1878 99.42 True CONTIG scaffold1878 694 correct CONTIG scaffold1869 752 unaligned CONTIG scaffold1876 317 unaligned CONTIG scaffold1768 861 unaligned CONTIG scaffold1882 411 unaligned CONTIG scaffold1883 642 unaligned 6343577 6344225 705 63 CM091768.1 scaffold1884 96.15 True unknown 6343413 6344116 1717 1008 CM091768.1 scaffold1884 96.2 True unknown CONTIG scaffold1884 6959 mis_unaligned CONTIG scaffold1881 638 unaligned CONTIG scaffold1886 415 unaligned 6670606 6671543 1 947 CM091755.1 scaffold1887 95.36 True local misassembly 6671065 6681581 1383 11890 CM091755.1 scaffold1887 98.41 True fake: scaffold gap size wrong estimation (local) 6682000 6684146 12643 14787 CM091755.1 scaffold1887 99.35 True CONTIG scaffold1887 14787 correct CONTIG scaffold1888 357 unaligned CONTIG scaffold1889 390 unaligned CONTIG scaffold1880 1324 unaligned CONTIG scaffold1891 906 unaligned CONTIG scaffold1890 440 unaligned CONTIG scaffold1885 4188 unaligned CONTIG scaffold1893 446 unaligned CONTIG scaffold1895 429 unaligned CONTIG scaffold1894 471 unaligned CONTIG scaffold1879 1005 unaligned 16435752 16436367 1 616 CM091752.1 scaffold1898 100.0 True fake: scaffold gap size wrong estimation (local) 16436777 16439275 1049 3547 CM091752.1 scaffold1898 99.68 True local misassembly 16439901 16442016 4185 6300 CM091752.1 scaffold1898 99.81 True local misassembly 16442774 16443594 7505 8325 CM091752.1 scaffold1898 98.9 True CONTIG scaffold1898 8325 correct CONTIG scaffold1899 710 unaligned CONTIG scaffold1897 755 unaligned CONTIG scaffold1892 431 unaligned 4089579 4090257 1 679 CM091752.1 scaffold1902 99.71 True CONTIG scaffold1902 679 correct CONTIG scaffold1901 1350 unaligned CONTIG scaffold1903 77084 unaligned 11095326 11096458 1151 1 CM091765.1 scaffold1904 96.46 True CONTIG scaffold1904 1156 correct CONTIG scaffold1905 415 unaligned CONTIG scaffold1907 416 unaligned CONTIG scaffold1900 2989 unaligned 8475737 8476426 690 1 CM091766.1 scaffold1909 99.86 True CONTIG scaffold1909 690 correct 8480166 8480855 690 1 CM091766.1 scaffold1910 100.0 True CONTIG scaffold1910 690 correct CONTIG scaffold1906 445 unaligned CONTIG scaffold1912 489 unaligned CONTIG scaffold1908 454 unaligned CONTIG scaffold1911 3190 unaligned CONTIG scaffold1914 384 unaligned CONTIG scaffold1915 747 unaligned 2081127 2085248 469 4591 CM091764.1 scaffold1916 99.93 True CONTIG scaffold1916 4591 correct 881627 888153 1 6529 CM091764.1 scaffold1917 99.86 True CONTIG scaffold1917 6529 correct CONTIG scaffold1919 518 unaligned CONTIG scaffold1920 543 unaligned 16729630 16730223 594 1 CM091752.1 scaffold1921 99.49 True CONTIG scaffold1921 594 correct CONTIG scaffold1922 445 unaligned 16571902 16572803 926 1 CM091752.1 scaffold1918 95.57 True CONTIG scaffold1918 926 correct 2881284 2882263 968 1 CM091762.1 scaffold1924 98.47 True CONTIG scaffold1924 968 correct CONTIG scaffold1925 734 unaligned CONTIG scaffold1913 1178 unaligned CONTIG scaffold1927 403 unaligned CONTIG scaffold1923 795 unaligned CONTIG scaffold1929 426 unaligned 16908603 16911449 3997 1152 CM091755.1 scaffold1928 99.93 True CONTIG scaffold1928 3997 correct CONTIG scaffold1926 592 unaligned CONTIG scaffold1931 768 unaligned 13396893 13398136 1 1240 CM091758.1 scaffold1933 99.52 True CONTIG scaffold1933 1240 correct 14258878 14267867 10218 1 CM091758.1 scaffold1934 98.05 True CONTIG scaffold1934 10218 correct 16047021 16047812 1 793 CM091752.1 scaffold1935 97.48 True CONTIG scaffold1935 793 correct CONTIG scaffold1930 347 unaligned CONTIG scaffold1936 432 unaligned 9389846 9390543 2867 3564 CM091752.1 scaffold1932 97.13 True CONTIG scaffold1932 3756 correct_unaligned 2071970 2079054 1 7085 CM091764.1 scaffold1939 99.94 True CONTIG scaffold1939 7085 correct 9367991 9368524 944 410 CM091752.1 scaffold1940 99.63 True CONTIG scaffold1940 944 correct CONTIG scaffold1941 341 unaligned 1380854 1381473 1 631 CM091755.1 scaffold1942 98.1 True CONTIG scaffold1942 631 correct 12683287 12684071 1101 317 CM091752.1 scaffold1938 98.22 True CONTIG scaffold1938 1827 correct_unaligned CONTIG scaffold1943 425 unaligned CONTIG scaffold1945 537 unaligned CONTIG scaffold1944 629 unaligned CONTIG scaffold1947 4075 unaligned 16236303 16236944 665 1 CM091752.1 scaffold1948 95.34 True CONTIG scaffold1948 665 correct CONTIG scaffold1949 497 unaligned CONTIG scaffold1946 397 unaligned CONTIG scaffold1951 809 unaligned 16520129 16520824 1 696 CM091752.1 scaffold1952 98.99 True CONTIG scaffold1952 696 correct CONTIG scaffold1937 4209 unaligned 16484349 16485045 1 697 CM091752.1 scaffold1953 99.43 True fake: scaffold gap size wrong estimation (local) 16485252 16486448 2289 3483 CM091752.1 scaffold1953 98.16 True indel: indel (> 5bp) 16486544 16487198 3564 4216 CM091752.1 scaffold1953 98.63 True fake: scaffold gap size wrong estimation (local) 16489368 16491106 6209 7957 CM091752.1 scaffold1953 97.94 True local misassembly 16487580 16488513 8369 9302 CM091752.1 scaffold1953 99.14 True indel: indel (> 5bp) 16488740 16489316 9565 10141 CM091752.1 scaffold1953 98.96 True indel: indel (> 5bp) 16489336 16490064 10220 10948 CM091752.1 scaffold1953 99.04 True CONTIG scaffold1953 13008 correct CONTIG scaffold1955 388 unaligned 4255666 4256279 614 1 CM091752.1 scaffold1956 99.67 True CONTIG scaffold1956 614 correct 15688107 15689226 1120 1 CM091757.1 scaffold1957 99.29 True CONTIG scaffold1957 1120 correct CONTIG scaffold1954 641 unaligned CONTIG scaffold1958 290 unaligned 3852141 3859863 8282 1 CM091768.1 scaffold1950 98.01 True fake: scaffold gap size wrong estimation (local) 3839903 3851605 23483 10972 CM091768.1 scaffold1950 98.32 True CONTIG scaffold1950 23483 correct CONTIG scaffold1959 285 unaligned CONTIG scaffold1961 424 unaligned CONTIG scaffold1960 289 unaligned CONTIG scaffold1963 492 unaligned CONTIG scaffold1962 425 unaligned CONTIG scaffold1966 440 unaligned CONTIG scaffold1964 658 unaligned 608333 609264 1 973 CM091755.1 scaffold1967 98.9 True CONTIG scaffold1967 973 correct 3764687 3778313 1 13555 CM091752.1 scaffold1968 97.45 True CONTIG scaffold1968 13555 correct CONTIG scaffold1965 414 unaligned 5249755 5256522 6779 1 CM091760.1 scaffold1971 99.42 True local misassembly 5241184 5250320 16034 6858 CM091760.1 scaffold1971 98.29 True CONTIG scaffold1971 16036 correct CONTIG scaffold1972 70340 unaligned CONTIG scaffold1970 1198 unaligned CONTIG scaffold1974 411 unaligned CONTIG scaffold1969 800 unaligned 1797679 1798358 1 680 CM091764.1 scaffold1976 99.56 True CONTIG scaffold1976 680 correct CONTIG scaffold1975 307 unaligned CONTIG scaffold1977 481 unaligned CONTIG scaffold1973 783 unaligned CONTIG scaffold1980 339 unaligned CONTIG scaffold1981 380 unaligned CONTIG scaffold1979 675 unaligned 2978479 2991859 1 13474 CM091752.1 scaffold1982 99.19 True CONTIG scaffold1982 13474 correct CONTIG scaffold1978 368 unaligned CONTIG scaffold1984 341 unaligned CONTIG scaffold1986 455 unaligned 6441793 6442682 890 1 CM091768.1 scaffold1987 99.78 True CONTIG scaffold1987 890 correct CONTIG scaffold1988 396 unaligned 205795 207552 1753 1 CM091753.1 scaffold1985 99.6 True fake: scaffold gap size wrong estimation (local) 197770 205628 10675 2736 CM091753.1 scaffold1985 98.87 True fake: not a misassembly (possible transposable element) 8845577 8846608 10676 11708 CM091767.1 scaffold1985 99.16 True fake: not a misassembly (possible transposable element) 196467 197579 12834 11709 CM091753.1 scaffold1985 98.76 True fake: scaffold gap size wrong estimation (local) 186757 196227 23261 13784 CM091753.1 scaffold1985 99.95 True CONTIG scaffold1985 23261 correct CONTIG scaffold1990 250 unaligned CONTIG scaffold1991 600 unaligned CONTIG scaffold1992 366 unaligned 8796352 8807752 42 11788 CM091755.1 scaffold1989 99.03 True indel: indel (> 5bp) 8807808 8849659 11827 56160 CM091755.1 scaffold1989 98.2 True CONTIG scaffold1989 56160 correct CONTIG scaffold1994 372 unaligned CONTIG scaffold1993 578 unaligned 16429106 16429967 877 1 CM091752.1 scaffold1996 97.83 True CONTIG scaffold1996 980 correct 6344442 6345198 1 772 CM091768.1 scaffold1997 97.8 True CONTIG scaffold1997 772 correct 10705252 10706710 1 1459 CM091766.1 scaffold1896 99.93 True local misassembly 10705610 10902523 1460 201031 CM091766.1 scaffold1896 99.03 True fake: scaffold gap size wrong estimation (local) 10903838 10905092 202634 203888 CM091766.1 scaffold1896 99.52 True CONTIG scaffold1896 203888 correct CONTIG scaffold1999 265 unaligned CONTIG scaffold1998 921 unaligned CONTIG scaffold2001 351 unaligned CONTIG scaffold2002 747 unaligned CONTIG scaffold2003 1351 unaligned CONTIG scaffold2004 459 unaligned CONTIG scaffold1995 404 unaligned CONTIG scaffold2000 315 unaligned CONTIG scaffold2007 434 unaligned CONTIG scaffold2008 271 unaligned CONTIG scaffold2006 580 unaligned 16395322 16398441 3158 1 CM091752.1 scaffold2005 97.82 True CONTIG scaffold2005 3781 correct CONTIG scaffold2011 397 unaligned 8101017 8101529 1 513 CM091767.1 scaffold2012 100.0 True CONTIG scaffold2012 513 correct 4202480 4203096 617 1 CM091768.1 scaffold2013 99.84 True CONTIG scaffold2013 617 correct 15344962 15345883 941 1 CM091752.1 scaffold2014 97.66 True CONTIG scaffold2014 941 correct CONTIG scaffold2015 384 unaligned CONTIG scaffold2016 439 unaligned CONTIG scaffold2010 370 unaligned CONTIG scaffold2018 333 unaligned CONTIG scaffold2019 435 unaligned CONTIG scaffold2020 402 unaligned 2856021 2856769 1 733 CM091762.1 scaffold2021 95.46 True CONTIG scaffold2021 819 correct 1920951 1921827 913 1 CM091764.1 scaffold2017 95.53 True local misassembly 1913941 1915105 2067 914 CM091764.1 scaffold2017 97.77 True fake: not a misassembly (possible transposable element) 13209561 13210131 2280 2853 CM091752.1 scaffold2017 98.78 True fake: not a misassembly (possible transposable element) 1909005 1913984 7899 2875 CM091764.1 scaffold2017 98.63 True local misassembly 1908860 1910364 9416 7914 CM091764.1 scaffold2017 99.53 True CONTIG scaffold2017 9416 correct CONTIG scaffold2023 661 unaligned 3932569 3933134 1 566 CM091768.1 scaffold2024 100.0 True CONTIG scaffold2024 566 correct 9308067 9324810 16765 1 CM091767.1 scaffold2022 99.43 True CONTIG scaffold2022 16765 correct CONTIG scaffold2009 534 unaligned CONTIG scaffold2025 989 unaligned CONTIG scaffold2027 361 unaligned CONTIG scaffold2026 534 unaligned CONTIG scaffold2030 427 unaligned 4074546 4075071 2764 2239 CM091752.1 scaffold2028 99.43 True CONTIG scaffold2028 2764 correct CONTIG scaffold2031 413 unaligned CONTIG scaffold2032 314 unaligned CONTIG scaffold2034 370 unaligned CONTIG scaffold2029 362 unaligned CONTIG scaffold2033 212763 unaligned CONTIG scaffold2037 460 unaligned CONTIG scaffold2036 472 unaligned 12629463 12632077 2615 1 CM091759.1 scaffold2038 99.5 True CONTIG scaffold2038 2615 correct CONTIG scaffold2035 1365 unaligned CONTIG scaffold2041 410 unaligned 8178011 8181235 1 3283 CM091767.1 scaffold2039 99.29 True local misassembly 8182776 8188739 5368 11330 CM091767.1 scaffold2039 99.93 True CONTIG scaffold2039 11330 correct CONTIG scaffold2040 351 unaligned CONTIG scaffold2043 475 unaligned CONTIG scaffold2045 476 unaligned 4154141 4155776 1657 1 CM091768.1 scaffold2046 97.83 True fake: scaffold gap size wrong estimation (local) 4152141 4153745 4970 3366 CM091768.1 scaffold2046 100.0 True CONTIG scaffold2046 4970 correct 3246261 3289098 2 43300 CM091760.1 scaffold2044 99.06 True fake: scaffold gap size wrong estimation (local) 3289258 3306684 44015 62600 CM091760.1 scaffold2044 99.39 True CONTIG scaffold2044 62600 correct 12633155 12658732 25598 1 CM091759.1 scaffold2047 99.5 True CONTIG scaffold2047 25598 correct 15489829 15490535 706 1 CM091752.1 scaffold2049 99.43 True CONTIG scaffold2049 706 correct CONTIG scaffold2050 304 unaligned CONTIG scaffold2051 604 unaligned CONTIG scaffold2042 3305 unaligned CONTIG scaffold2052 349 unaligned CONTIG scaffold2053 1040 unaligned CONTIG scaffold1719 14665 unaligned CONTIG scaffold2056 414 unaligned CONTIG scaffold2054 406 unaligned CONTIG scaffold2057 401 unaligned CONTIG scaffold2058 240 unaligned CONTIG scaffold2055 653 unaligned CONTIG scaffold2059 703 unaligned CONTIG scaffold2060 788 unaligned 16462837 16464642 1823 1 CM091752.1 scaffold2062 95.91 True fake: scaffold gap size wrong estimation (local) 16460970 16462031 3643 2553 CM091752.1 scaffold2062 96.06 True CONTIG scaffold2062 3643 correct CONTIG scaffold2063 1269 unaligned CONTIG scaffold2064 299 unaligned CONTIG scaffold2065 34446 unaligned CONTIG scaffold2067 560 unaligned 16438022 16439108 13 1111 CM091752.1 scaffold2068 96.3 True fake: scaffold gap size wrong estimation (local) 16439314 16441471 1827 3955 CM091752.1 scaffold2068 95.16 True CONTIG scaffold2068 4547 correct CONTIG scaffold2061 830 unaligned CONTIG scaffold2070 420 unaligned CONTIG scaffold2071 482 unaligned CONTIG scaffold2072 30891 unaligned CONTIG scaffold2066 688 unaligned CONTIG scaffold2074 449 unaligned 4641244 4642174 930 1 CM091754.1 scaffold2075 99.89 True CONTIG scaffold2075 930 correct CONTIG scaffold2069 392 unaligned CONTIG scaffold2076 243 unaligned CONTIG scaffold2077 4796 unaligned CONTIG scaffold2079 429 unaligned CONTIG scaffold2078 372 unaligned CONTIG scaffold2080 426 unaligned 3637485 3638824 1341 1 CM091768.1 scaffold2048 99.18 True fake: scaffold gap size wrong estimation (local) 3635638 3636954 4175 2805 CM091768.1 scaffold2048 95.84 True CONTIG scaffold2048 4175 correct CONTIG scaffold2082 533 unaligned CONTIG scaffold2084 318 unaligned CONTIG scaffold2085 372 unaligned CONTIG scaffold2086 4151 unaligned CONTIG scaffold2087 626 unaligned CONTIG scaffold2088 314 unaligned CONTIG scaffold2089 344 unaligned 97859 99874 923 2938 CM091763.1 scaffold2090 99.95 True CONTIG scaffold2090 2938 correct CONTIG scaffold2081 434 unaligned 1453988 1455046 846 1904 CM091764.1 scaffold2091 95.86 True CONTIG scaffold2091 3744 correct_unaligned 4449830 4452754 2953 1 CM091754.1 scaffold2092 97.9 True local misassembly 4450629 4451322 3647 2954 CM091754.1 scaffold2092 99.71 True CONTIG scaffold2092 3663 correct CONTIG scaffold2093 361 unaligned CONTIG scaffold2095 483 unaligned CONTIG scaffold2073 4484 unaligned 15818750 15819367 618 1 CM091757.1 scaffold2096 100.0 True CONTIG scaffold2096 709 correct CONTIG scaffold2094 669 unaligned CONTIG scaffold2097 313 unaligned CONTIG scaffold2099 936 unaligned 4586341 4587878 1 1538 CM091768.1 scaffold2101 100.0 True CONTIG scaffold2101 1538 correct 3935990 3937245 1 1256 CM091768.1 scaffold2102 100.0 True CONTIG scaffold2102 1256 correct 4296930 4297955 225 1249 CM091768.1 scaffold2098 99.9 True local misassembly 4297960 4300552 3372 5963 CM091768.1 scaffold2098 99.85 True CONTIG scaffold2098 6353 correct CONTIG scaffold2100 369 unaligned CONTIG scaffold2105 520 unaligned CONTIG scaffold2106 317 unaligned CONTIG scaffold2103 391 unaligned CONTIG scaffold2108 401 unaligned CONTIG scaffold2104 808 unaligned CONTIG scaffold2110 300 unaligned CONTIG scaffold2111 342 unaligned 15440975 15441540 1 542 CM091752.1 scaffold2109 95.58 True relocation, inconsistency = 10158 15451702 15452267 1111 546 CM091752.1 scaffold2109 99.47 True CONTIG scaffold2109 1111 misassembled 15534060 15535603 1544 1 CM091757.1 scaffold2113 100.0 True CONTIG scaffold2113 1544 correct CONTIG scaffold2112 1135 unaligned 3199653 3200723 1 1071 CM091752.1 scaffold2115 99.91 True CONTIG scaffold2115 1071 correct CONTIG scaffold2114 579 unaligned CONTIG scaffold2117 453 unaligned CONTIG scaffold2118 621 unaligned CONTIG scaffold2116 357 unaligned 9089761 9100560 10918 1 CM091767.1 scaffold2119 99.16 True fake: scaffold gap size wrong estimation (local) 9089022 9089676 11687 11009 CM091767.1 scaffold2119 99.69 True fake: scaffold gap size wrong estimation (local) 9086566 9088415 14250 12311 CM091767.1 scaffold2119 97.41 True CONTIG scaffold2119 14250 correct 11061879 11128597 67782 1 CM091766.1 scaffold2120 99.69 True CONTIG scaffold2120 67782 correct CONTIG scaffold2122 3928 unaligned CONTIG scaffold2123 499 unaligned 20551653 20552254 304 904 CM091751.1 scaffold2124 98.84 True CONTIG scaffold2124 992 correct 127555 128987 1466 1 CM091764.1 scaffold2125 97.68 True fake: scaffold gap size wrong estimation (local) 122971 126871 6502 2600 CM091764.1 scaffold2125 99.85 True CONTIG scaffold2125 6502 correct CONTIG scaffold2121 323 unaligned 15242087 15245716 1 3598 CM091752.1 scaffold2126 98.04 True CONTIG scaffold2126 3598 correct CONTIG scaffold2128 427 unaligned CONTIG scaffold2129 421 unaligned 18525750 18528280 2535 1 CM091751.1 scaffold2130 99.33 True fake: scaffold gap size wrong estimation (local) 18524362 18525435 3924 2851 CM091751.1 scaffold2130 99.44 True indel: indel (<= 5bp) 18523037 18524361 5250 3926 CM091751.1 scaffold2130 99.55 True local misassembly 18520446 18521149 8143 7440 CM091751.1 scaffold2130 99.29 True CONTIG scaffold2130 11151 correct CONTIG scaffold2131 492 unaligned 16979628 16980304 1 682 CM091752.1 scaffold2132 96.93 True CONTIG scaffold2132 682 correct CONTIG scaffold2133 417 unaligned CONTIG scaffold2127 977 unaligned CONTIG scaffold2134 675 unaligned 2105385 2230079 178 125078 CM091753.1 scaffold2083 99.68 True CONTIG scaffold2083 134779 correct CONTIG scaffold2137 315 unaligned 4594040 4594949 1729 2634 CM091768.1 scaffold2136 96.48 True CONTIG scaffold2136 6485 correct_unaligned CONTIG scaffold2135 620 unaligned CONTIG scaffold2140 443 unaligned CONTIG scaffold2141 340 unaligned 10981946 11003801 1996 23857 CM091765.1 scaffold2138 99.83 True CONTIG scaffold2138 23857 correct 15448229 15449786 1 1559 CM091752.1 scaffold2142 99.87 True fake: scaffold gap size wrong estimation (local) 15450918 15451647 3016 3761 CM091752.1 scaffold2142 97.32 True CONTIG scaffold2142 3761 correct 4473644 4474351 785 61 CM091754.1 scaffold2144 95.32 True CONTIG scaffold2144 961 correct CONTIG scaffold2143 751 unaligned CONTIG scaffold2139 441 unaligned CONTIG scaffold2147 482 unaligned CONTIG scaffold2148 548 unaligned CONTIG scaffold2146 354 unaligned 16165576 16166348 1 773 CM091757.1 scaffold2145 100.0 True fake: scaffold gap size wrong estimation (local) 16167970 16168551 3173 3754 CM091757.1 scaffold2145 99.83 True CONTIG scaffold2145 3954 correct CONTIG scaffold2151 455 unaligned 2865766 2867374 1 1652 CM091762.1 scaffold2152 97.34 True CONTIG scaffold2152 1652 correct CONTIG scaffold2150 718 unaligned CONTIG scaffold2149 428 unaligned CONTIG scaffold2153 544 unaligned CONTIG scaffold2155 396 unaligned CONTIG scaffold2156 429 unaligned 16984096 16984762 667 1 CM091752.1 scaffold2158 98.65 True CONTIG scaffold2158 667 correct 15727674 15728726 1053 1 CM091752.1 scaffold2159 98.96 True CONTIG scaffold2159 1053 correct 1811597 1815781 199 4933 CM091764.1 scaffold2157 97.48 True CONTIG scaffold2157 4933 correct CONTIG scaffold2161 447 unaligned CONTIG scaffold2162 352 unaligned CONTIG scaffold2163 681 unaligned CONTIG scaffold2154 1695 unaligned 4327183 4329982 2800 1 CM091768.1 scaffold2164 99.32 True local misassembly 4328083 4328876 3620 2801 CM091768.1 scaffold2164 96.71 True CONTIG scaffold2164 3620 correct CONTIG scaffold2166 350 unaligned CONTIG scaffold1983 7890 unaligned CONTIG scaffold2168 438 unaligned CONTIG scaffold2167 763 unaligned CONTIG scaffold2170 331 unaligned 8569525 8572735 1 3211 CM091767.1 scaffold2169 99.88 True CONTIG scaffold2169 3211 correct CONTIG scaffold2172 808 unaligned 5042180 5044588 2409 1 CM091768.1 scaffold2171 99.88 True CONTIG scaffold2171 3159 correct CONTIG scaffold2174 338 unaligned CONTIG scaffold2165 876 unaligned CONTIG scaffold2175 331 unaligned 16255996 16256511 1 516 CM091752.1 scaffold2177 99.81 True CONTIG scaffold2177 516 correct 4305479 4307029 2161 612 CM091768.1 scaffold2178 99.1 True relocation, inconsistency = 49226 4356256 4357342 2162 3248 CM091768.1 scaffold2178 100.0 True CONTIG scaffold2178 3248 misassembled CONTIG scaffold2179 455 unaligned CONTIG scaffold2173 393 unaligned 1742597 1745342 1 2747 CM091764.1 scaffold2176 99.93 True fake: scaffold gap size wrong estimation (local) 1745622 1746685 3754 4840 CM091764.1 scaffold2176 95.63 True fake: scaffold gap size wrong estimation (local) 1747853 1748469 6711 7327 CM091764.1 scaffold2176 99.03 True indel: indel (<= 5bp) 1748470 1751177 7333 10040 CM091764.1 scaffold2176 100.0 True indel: indel (<= 5bp) 1751182 1752441 10041 11300 CM091764.1 scaffold2176 99.92 True CONTIG scaffold2176 11982 correct CONTIG scaffold2182 799 unaligned CONTIG scaffold2180 393 unaligned CONTIG scaffold2184 401 unaligned CONTIG scaffold2183 449 unaligned CONTIG scaffold2186 296 unaligned CONTIG scaffold2181 815 unaligned CONTIG scaffold2188 1092 unaligned 7204957 7205795 839 1 CM091758.1 scaffold2189 99.05 True CONTIG scaffold2189 1185 correct 4257324 4258408 1 1085 CM091752.1 scaffold2190 99.91 True CONTIG scaffold2190 1085 correct CONTIG scaffold2191 467 unaligned CONTIG scaffold2185 1012 unaligned CONTIG scaffold2187 848 unaligned CONTIG scaffold2194 328 unaligned CONTIG scaffold2195 537 unaligned CONTIG scaffold2193 769 unaligned CONTIG scaffold2197 428 unaligned CONTIG scaffold2198 402 unaligned CONTIG scaffold2196 1652 unaligned 3546364 3547091 3641 2916 CM091753.1 scaffold2192 99.59 True CONTIG scaffold2192 9516 correct_unaligned 19394470 19401491 7049 16 CM091751.1 scaffold2200 98.07 True fake: scaffold gap size wrong estimation (local) 19393385 19394241 9236 8361 CM091751.1 scaffold2200 96.35 True fake: scaffold gap size wrong estimation (local) 19390587 19394268 13194 9482 CM091751.1 scaffold2200 98.36 True fake: scaffold gap size wrong estimation (local) 19377143 19390219 27738 13794 CM091751.1 scaffold2200 97.22 True indel: indel (> 5bp) 19350959 19377094 54330 27822 CM091751.1 scaffold2200 98.31 True local misassembly 19349233 19350840 56639 55031 CM091751.1 scaffold2200 98.45 True CONTIG scaffold2200 56639 correct CONTIG scaffold2201 699 unaligned 8469511 8473628 4115 1 CM091766.1 scaffold2160 99.83 True indel: indel (> 5bp) 8467916 8469453 5733 4195 CM091766.1 scaffold2160 99.74 True fake: scaffold gap size wrong estimation (local) 8466582 8467223 7453 6812 CM091766.1 scaffold2160 99.69 True indel: indel (> 5bp) 8464858 8466581 9210 7487 CM091766.1 scaffold2160 100.0 True local misassembly 8460798 8464857 13704 9645 CM091766.1 scaffold2160 100.0 True CONTIG scaffold2160 15758 correct CONTIG scaffold2203 440 unaligned CONTIG scaffold2205 418 unaligned 4138010 4138587 1 577 CM091761.1 scaffold2204 95.38 True CONTIG scaffold2204 577 correct CONTIG scaffold2207 736 unaligned CONTIG scaffold2202 713 unaligned CONTIG scaffold2209 471 unaligned CONTIG scaffold2208 8083 unaligned CONTIG scaffold2211 319 unaligned CONTIG scaffold2210 413 unaligned 3204395 3205305 911 1 CM091752.1 scaffold2212 99.78 True fake: scaffold gap size wrong estimation (local) 3203548 3204559 2570 1559 CM091752.1 scaffold2212 97.92 True local misassembly 3201333 3203547 5199 2985 CM091752.1 scaffold2212 99.77 True local misassembly 3201172 3202172 6212 5212 CM091752.1 scaffold2212 99.8 True CONTIG scaffold2212 6212 correct CONTIG scaffold2199 1254 unaligned CONTIG scaffold2214 275 unaligned CONTIG scaffold2216 357 unaligned 17199965 17200688 1 724 CM091752.1 scaffold2217 99.17 True CONTIG scaffold2217 724 correct 2148685 2188838 528 41215 CM091754.1 scaffold2213 99.04 True CONTIG scaffold2213 41215 correct CONTIG scaffold2215 431 unaligned CONTIG scaffold2219 451 unaligned CONTIG scaffold2220 471 unaligned CONTIG scaffold2222 406 unaligned 15750321 15751069 1 745 CM091752.1 scaffold2223 95.09 True CONTIG scaffold2223 745 correct CONTIG scaffold2218 668 unaligned CONTIG scaffold2221 655 unaligned CONTIG scaffold2226 387 unaligned 15118098 15118801 704 1 CM091752.1 scaffold2225 98.72 True CONTIG scaffold2225 851 correct 17351834 17353689 1 1853 CM091752.1 scaffold2228 97.84 True translocation 16669091 16670300 1854 3063 CM091756.1 scaffold2228 99.59 True CONTIG scaffold2228 3063 misassembled CONTIG scaffold2229 321 unaligned CONTIG scaffold2230 427 unaligned CONTIG scaffold2231 348 unaligned CONTIG scaffold2232 454 unaligned CONTIG scaffold2224 438 unaligned CONTIG scaffold2234 278 unaligned 4298524 4299223 700 1 CM091768.1 scaffold2235 100.0 True CONTIG scaffold2235 700 correct 19426849 19427416 568 1 CM091751.1 scaffold2233 98.77 True local misassembly 19424903 19425471 2323 1755 CM091751.1 scaffold2233 98.77 True indel: indel (<= 5bp) 19423624 19424736 3604 2492 CM091751.1 scaffold2233 98.65 True local misassembly 19410533 19423034 17185 4614 CM091751.1 scaffold2233 97.91 True fake: scaffold gap size wrong estimation (local) 19408814 19409504 19254 18564 CM091751.1 scaffold2233 98.99 True indel: indel (> 5bp) 19407534 19408354 20513 19693 CM091751.1 scaffold2233 98.78 True fake: scaffold gap size wrong estimation (local) 19401478 19405881 27506 23098 CM091751.1 scaffold2233 99.0 True CONTIG scaffold2233 27550 correct CONTIG scaffold2237 374 unaligned CONTIG scaffold2238 352 unaligned CONTIG scaffold2239 1019 unaligned 3169458 3171517 1 2053 CM091752.1 scaffold2240 99.08 True CONTIG scaffold2240 4121 correct CONTIG scaffold2236 621 unaligned CONTIG scaffold2242 403 unaligned CONTIG scaffold2243 468 unaligned 17095992 17096685 694 1 CM091752.1 scaffold2244 100.0 True CONTIG scaffold2244 694 correct CONTIG scaffold2245 452 unaligned 15818885 15821258 2649 5068 CM091752.1 scaffold2246 97.48 True indel: indel (> 5bp) 15821299 15823990 5139 7831 CM091752.1 scaffold2246 99.81 True CONTIG scaffold2246 7894 correct CONTIG scaffold2247 360 unaligned CONTIG scaffold2227 1072 unaligned CONTIG scaffold2248 750 unaligned CONTIG scaffold2250 377 unaligned CONTIG scaffold2251 402 unaligned CONTIG scaffold2249 312 unaligned 15651456 15652096 1 641 CM091752.1 scaffold2253 100.0 True CONTIG scaffold2253 641 correct 547497 548719 1 1223 CM091764.1 scaffold2254 99.84 True CONTIG scaffold2254 3581 correct 9080102 9082149 2049 1 CM091767.1 scaffold2241 99.66 True local misassembly 9077931 9080799 4946 2050 CM091767.1 scaffold2241 98.55 True fake: scaffold gap size wrong estimation (local) 9073251 9074688 8955 7498 CM091767.1 scaffold2241 99.03 True fake: scaffold gap size wrong estimation (local) 9054915 9072157 28155 10315 CM091767.1 scaffold2241 98.39 True CONTIG scaffold2241 28155 correct CONTIG scaffold2256 413 unaligned 6059750 6060379 1 630 CM091754.1 scaffold2257 99.05 True CONTIG scaffold2257 1313 correct_unaligned 19490433 19491213 2724 1923 CM091751.1 scaffold2258 95.4 True relocation, inconsistency = -50871 19533004 19539288 11249 4740 CM091751.1 scaffold2258 95.44 True CONTIG scaffold2258 11455 misassembled CONTIG scaffold2259 419 unaligned 7196602 7198371 1 1770 CM091758.1 scaffold2260 99.72 True fake: scaffold gap size wrong estimation (local) 7200000 7200786 4207 4993 CM091758.1 scaffold2260 100.0 True CONTIG scaffold2260 4993 correct 810109 814054 1 3945 CM091753.1 scaffold2261 99.8 True fake: scaffold gap size wrong estimation (local) 814731 824500 4671 14440 CM091753.1 scaffold2261 99.95 True CONTIG scaffold2261 14440 correct CONTIG scaffold2262 365 unaligned CONTIG scaffold2263 1314 unaligned CONTIG scaffold2264 399 unaligned CONTIG scaffold2252 446 unaligned CONTIG scaffold2266 395 unaligned CONTIG scaffold2265 388 unaligned CONTIG scaffold2255 1211 unaligned CONTIG scaffold2269 413 unaligned CONTIG scaffold2267 280 unaligned CONTIG scaffold2268 471 unaligned CONTIG scaffold2272 648 unaligned CONTIG scaffold2271 459 unaligned CONTIG scaffold2274 897 unaligned CONTIG scaffold2275 357 unaligned 3640058 3648766 1 8709 CM091768.1 scaffold2273 99.98 True translocation 8860195 8861194 8710 9709 CM091752.1 scaffold2273 100.0 True translocation 6236252 6237898 11356 9710 CM091768.1 scaffold2273 100.0 True CONTIG scaffold2273 11356 misassembled 1876177 1877300 1124 1 CM091764.1 scaffold2276 98.75 True fake: scaffold gap size wrong estimation (local) 1873498 1875732 4596 2361 CM091764.1 scaffold2276 99.69 True CONTIG scaffold2276 6966 correct CONTIG scaffold2278 386 unaligned 5068002 5076100 1 8103 CM091761.1 scaffold2270 99.15 True indel: indel (> 5bp) 5076176 5082370 8208 14425 CM091761.1 scaffold2270 98.33 True indel: indel (<= 5bp) 5082442 5119327 14500 51440 CM091761.1 scaffold2270 99.33 True indel: indel (> 5bp) 5119415 5161747 51538 93885 CM091761.1 scaffold2270 99.42 True local misassembly 5162079 5212476 94512 145494 CM091761.1 scaffold2270 99.21 True CONTIG scaffold2270 145500 correct 509722 597843 89077 1 CM091755.1 scaffold1586 99.53 True local misassembly 438084 510210 162814 89091 CM091755.1 scaffold1586 99.22 True fake: not a misassembly (possible transposable element) 13925162 13925770 166121 166729 CM091752.1 scaffold1586 99.01 True fake: not a misassembly (possible transposable element) 433490 434154 169562 168872 CM091755.1 scaffold1586 96.09 True fake: scaffold gap size wrong estimation (local) 418813 433065 184961 170728 CM091755.1 scaffold1586 99.79 True fake: scaffold gap size wrong estimation (local) 415636 416963 188819 187491 CM091755.1 scaffold1586 99.92 True fake: scaffold gap size wrong estimation (local) 410723 414607 193855 189971 CM091755.1 scaffold1586 99.97 True indel: indel (<= 5bp) 408907 410721 195670 193856 CM091755.1 scaffold1586 99.94 True local misassembly 407242 408443 197982 196781 CM091755.1 scaffold1586 99.92 True indel: indel (<= 5bp) 406418 407241 198807 197984 CM091755.1 scaffold1586 100.0 True indel: indel (<= 5bp) 404264 406416 200960 198808 CM091755.1 scaffold1586 100.0 True indel: indel (> 5bp) 388447 404099 217759 201185 CM091755.1 scaffold1586 98.94 True fake: scaffold gap size wrong estimation (local) 350661 388340 258435 217876 CM091755.1 scaffold1586 96.63 True indel: indel (> 5bp) 327709 350448 282624 258639 CM091755.1 scaffold1586 97.51 True local misassembly 230350 328443 384115 282625 CM091755.1 scaffold1586 99.11 True fake: scaffold gap size wrong estimation (local) 80937 229978 537646 385266 CM091755.1 scaffold1586 99.58 True fake: scaffold gap size wrong estimation (local) 75123 80796 544339 538667 CM091755.1 scaffold1586 99.95 True fake: not a misassembly (possible transposable element) 74542 75115 544362 544935 CM091755.1 scaffold1586 100.0 True fake: not a misassembly (possible transposable element) 64399 75141 555672 544936 CM091755.1 scaffold1586 99.86 True fake: not a misassembly (possible transposable element) 721691 722452 556434 555673 CM091755.1 scaffold1586 100.0 True fake: not a misassembly (possible transposable element) 58333 64366 562448 556435 CM091755.1 scaffold1586 99.64 True indel: indel (> 5bp) 57370 58287 563422 562505 CM091755.1 scaffold1586 100.0 True CONTIG scaffold1586 563422 correct CONTIG scaffold2281 407 unaligned 14735791 14736382 1 624 CM091752.1 scaffold2282 99.63 True CONTIG scaffold2282 898 correct CONTIG scaffold2283 736 unaligned CONTIG scaffold2284 380 unaligned 1754718 1755310 1 614 CM091764.1 scaffold2285 96.09 True CONTIG scaffold2285 614 correct CONTIG scaffold2286 430 unaligned 2558016 2587672 1617 30774 CM091754.1 scaffold2287 96.54 True CONTIG scaffold2287 30774 correct CONTIG scaffold2288 328 unaligned CONTIG scaffold2277 456 unaligned 17022576 17024900 1 2329 CM091752.1 scaffold2290 99.36 True CONTIG scaffold2290 2329 correct CONTIG scaffold2279 625 unaligned CONTIG scaffold2289 486 unaligned 16725898 16727883 1 2008 CM091752.1 scaffold2293 97.41 True CONTIG scaffold2293 5073 correct 7681943 7683345 1684 282 CM091767.1 scaffold2291 99.29 True indel: indel (> 5bp) 7666621 7681839 16651 1768 CM091767.1 scaffold2291 97.69 True fake: scaffold gap size wrong estimation (local) 7623644 7666335 60322 16985 CM091767.1 scaffold2291 99.37 True CONTIG scaffold2291 60322 correct 1477294 1477998 1 705 CM091755.1 scaffold2295 99.72 True CONTIG scaffold2295 705 correct CONTIG scaffold2296 494 unaligned CONTIG scaffold2292 340 unaligned CONTIG scaffold2298 484 unaligned CONTIG scaffold2297 394 unaligned 6263987 6264637 1 651 CM091768.1 scaffold2299 100.0 True CONTIG scaffold2299 1456 correct_unaligned CONTIG scaffold2301 406 unaligned CONTIG scaffold2294 755 unaligned CONTIG scaffold2303 425 unaligned CONTIG scaffold2304 437 unaligned 16701160 16701843 1 706 CM091752.1 scaffold2305 95.18 True CONTIG scaffold2305 706 correct 16545040 16545696 664 1 CM091752.1 scaffold2306 96.24 True CONTIG scaffold2306 664 correct 19946227 19949519 3433 164 CM091751.1 scaffold2300 96.75 True CONTIG scaffold2300 4581 correct 4339482 4340100 1 619 CM091754.1 scaffold2307 99.52 True CONTIG scaffold2307 619 correct 4637314 4637823 805 296 CM091754.1 scaffold2308 99.8 True CONTIG scaffold2308 805 correct CONTIG scaffold2309 367 unaligned CONTIG scaffold2311 425 unaligned 1879630 1880110 516 1 CM091764.1 scaffold2312 95.25 True CONTIG scaffold2312 516 correct CONTIG scaffold2313 341 unaligned CONTIG scaffold2314 382 unaligned CONTIG scaffold2315 1377 unaligned CONTIG scaffold2316 1075 unaligned 8665734 8666726 993 1 CM091767.1 scaffold2317 100.0 True CONTIG scaffold2317 993 correct CONTIG scaffold2310 6351 unaligned CONTIG scaffold2319 460 unaligned CONTIG scaffold2320 491 unaligned CONTIG scaffold2321 270 unaligned CONTIG scaffold2322 406 unaligned 15709537 15710046 511 1 CM091752.1 scaffold2323 98.43 True CONTIG scaffold2323 511 correct CONTIG scaffold2318 444 unaligned 1722245 1727302 1 5129 CM091768.1 scaffold2324 98.38 True CONTIG scaffold2324 5129 correct CONTIG scaffold2326 414 unaligned CONTIG scaffold2327 354 unaligned CONTIG scaffold2325 597 unaligned CONTIG scaffold2329 397 unaligned 17287817 17291954 1 4136 CM091751.1 scaffold2330 99.9 True CONTIG scaffold2330 4136 correct CONTIG scaffold2328 1423 unaligned CONTIG scaffold2332 394 unaligned 3364006 3364853 1 847 CM091752.1 scaffold2333 99.53 True fake: scaffold gap size wrong estimation (local) 3364979 3366187 2007 3251 CM091752.1 scaffold2333 96.06 True CONTIG scaffold2333 3251 correct 4227896 4228573 1 687 CM091752.1 scaffold2334 98.11 True CONTIG scaffold2334 687 correct CONTIG scaffold2335 367 unaligned 17077861 17078798 1 937 CM091752.1 scaffold2336 99.89 True CONTIG scaffold2336 937 correct CONTIG scaffold2206 841 unaligned 14237041 14243338 6370 1 CM091758.1 scaffold2338 98.53 True local misassembly 14234710 14238602 10299 6371 CM091758.1 scaffold2338 98.45 True CONTIG scaffold2338 10753 correct CONTIG scaffold2339 474 unaligned CONTIG scaffold2302 4726 unaligned 15470298 15471413 1 1116 CM091757.1 scaffold2280 100.0 True fake: scaffold gap size wrong estimation (local) 15472184 15477944 2165 7929 CM091757.1 scaffold2280 99.93 True CONTIG scaffold2280 7929 correct CONTIG scaffold2340 452 unaligned CONTIG scaffold2337 387 unaligned 4322199 4322940 1 742 CM091768.1 scaffold2344 99.73 True fake: scaffold gap size wrong estimation (local) 4322796 4324649 1951 3803 CM091768.1 scaffold2344 99.57 True fake: scaffold gap size wrong estimation (local) 4326419 4327063 5680 6324 CM091768.1 scaffold2344 99.84 True CONTIG scaffold2344 6324 correct 4240333 4243970 3644 1 CM091768.1 scaffold2343 99.2 True relocation, inconsistency = 476023 3761435 3764309 6619 3645 CM091768.1 scaffold2343 96.51 True CONTIG scaffold2343 6619 misassembled CONTIG scaffold2346 389 unaligned CONTIG scaffold2345 357 unaligned CONTIG scaffold2347 404 unaligned CONTIG scaffold2349 602 unaligned 4350542 4351226 685 1 CM091768.1 scaffold2350 99.85 True CONTIG scaffold2350 685 correct 4414629 4419935 1 5359 CM091768.1 scaffold2351 99.53 True fake: scaffold gap size wrong estimation (local) 4420149 4423283 6021 9155 CM091768.1 scaffold2351 99.97 True CONTIG scaffold2351 9155 correct CONTIG scaffold2348 455 unaligned CONTIG scaffold2352 825 unaligned CONTIG scaffold2354 417 unaligned 1592727 1594580 1906 1 CM091764.1 scaffold2355 96.96 True CONTIG scaffold2355 1906 correct CONTIG scaffold2356 404 unaligned CONTIG scaffold2357 470 unaligned CONTIG scaffold2353 382 unaligned 17111439 17112482 1338 306 CM091752.1 scaffold2358 98.28 True CONTIG scaffold2358 1338 correct CONTIG scaffold2359 380 unaligned CONTIG scaffold2360 427 unaligned 995869 996965 1 1097 CM091753.1 scaffold2342 99.82 True local misassembly 996314 1048931 1163 54720 CM091753.1 scaffold2342 98.76 True CONTIG scaffold2342 54720 correct CONTIG scaffold2363 403 unaligned CONTIG scaffold2364 409 unaligned CONTIG scaffold2362 1404 unaligned CONTIG scaffold2361 678 unaligned CONTIG scaffold2366 1135 unaligned 5628931 5629857 1 927 CM091768.1 scaffold2368 100.0 True fake: scaffold gap size wrong estimation (local) 5630028 5635860 1859 7715 CM091768.1 scaffold2368 99.56 True CONTIG scaffold2368 7715 correct CONTIG scaffold2369 747 unaligned 10971721 10986367 15359 257 CM091764.1 scaffold1459 96.51 True indel: indel (> 5bp) 10735544 10971672 254430 15419 CM091764.1 scaffold1459 99.31 True local misassembly 10437250 10736364 562714 254431 CM091764.1 scaffold1459 99.23 True fake: scaffold gap size wrong estimation (local) 10397285 10436805 602190 563744 CM091764.1 scaffold1459 95.0 True indel: indel (<= 5bp) 10347146 10397249 652955 602225 CM091764.1 scaffold1459 99.25 True indel: stretch of mismatches 10190000 10346963 811964 653138 CM091764.1 scaffold1459 99.26 True indel: indel (> 5bp) 10167456 10189894 835024 812078 CM091764.1 scaffold1459 99.12 True local misassembly 9806479 10167175 1202790 836676 CM091764.1 scaffold1459 98.83 True fake: scaffold gap size wrong estimation (local) 9796906 9806467 1212677 1203278 CM091764.1 scaffold1459 97.16 True fake: scaffold gap size wrong estimation (local) 9784953 9796914 1225484 1213523 CM091764.1 scaffold1459 99.23 True local misassembly 9782698 9786136 1229562 1225485 CM091764.1 scaffold1459 99.1 True fake: scaffold gap size wrong estimation (local) 9747096 9782529 1268102 1230452 CM091764.1 scaffold1459 99.44 True fake: scaffold gap size wrong estimation (local) 9710889 9746703 1308553 1269450 CM091764.1 scaffold1459 97.68 True fake: scaffold gap size wrong estimation (local) 9699213 9710519 1321542 1310228 CM091764.1 scaffold1459 99.06 True fake: scaffold gap size wrong estimation (local) 9697615 9698395 1323507 1322680 CM091764.1 scaffold1459 99.72 True fake: scaffold gap size wrong estimation (local) 9693452 9694791 1326957 1325610 CM091764.1 scaffold1459 97.98 True fake: scaffold gap size wrong estimation (local) 9687219 9693297 1333350 1327121 CM091764.1 scaffold1459 99.2 True fake: scaffold gap size wrong estimation (local) 9680640 9686962 1340347 1333513 CM091764.1 scaffold1459 99.65 True fake: scaffold gap size wrong estimation (local) 9665904 9680524 1357215 1341260 CM091764.1 scaffold1459 99.48 True fake: scaffold gap size wrong estimation (local) 9643115 9665752 1381607 1357386 CM091764.1 scaffold1459 96.9 True fake: scaffold gap size wrong estimation (local) 9639986 9642607 1384562 1381929 CM091764.1 scaffold1459 99.8 True fake: scaffold gap size wrong estimation (local) 9631228 9639881 1394404 1385756 CM091764.1 scaffold1459 99.47 True fake: scaffold gap size wrong estimation (local) 9619907 9631118 1406386 1394524 CM091764.1 scaffold1459 99.02 True fake: scaffold gap size wrong estimation (local) 9609866 9619764 1416712 1406717 CM091764.1 scaffold1459 99.74 True fake: scaffold gap size wrong estimation (local) 9605234 9609767 1421824 1417284 CM091764.1 scaffold1459 99.49 True fake: scaffold gap size wrong estimation (local) 9589333 9604527 1437825 1422627 CM091764.1 scaffold1459 99.57 True fake: scaffold gap size wrong estimation (local) 9546531 9589138 1481754 1438921 CM091764.1 scaffold1459 99.35 True indel: indel (> 5bp) 9224918 9546168 1804973 1482127 CM091764.1 scaffold1459 99.39 True local misassembly 9136633 9224808 1896875 1808500 CM091764.1 scaffold1459 99.11 True fake: scaffold gap size wrong estimation (local) 9134156 9134939 1899430 1898650 CM091764.1 scaffold1459 99.49 True fake: scaffold gap size wrong estimation (local) 9112252 9133974 1922428 1900004 CM091764.1 scaffold1459 99.14 True fake: scaffold gap size wrong estimation (local) 8963258 9112054 2075339 1922869 CM091764.1 scaffold1459 99.28 True indel: indel (> 5bp) 8929091 8963234 2110569 2075387 CM091764.1 scaffold1459 99.39 True fake: scaffold gap size wrong estimation (local) 8896620 8928862 2145435 2111304 CM091764.1 scaffold1459 96.43 True fake: scaffold gap size wrong estimation (local) 8883721 8896032 2158876 2146051 CM091764.1 scaffold1459 99.34 True local misassembly 8882604 8884714 2160987 2158877 CM091764.1 scaffold1459 100.0 True fake: scaffold gap size wrong estimation (local) 8860790 8882052 2184020 2161839 CM091764.1 scaffold1459 99.55 True fake: scaffold gap size wrong estimation (local) 8749007 8860696 2299866 2184113 CM091764.1 scaffold1459 99.09 True indel: indel (> 5bp) 8715210 8748858 2333623 2299953 CM091764.1 scaffold1459 99.84 True fake: scaffold gap size wrong estimation (local) 8703649 8715033 2345998 2334447 CM091764.1 scaffold1459 99.2 True fake: scaffold gap size wrong estimation (local) 8645050 8703147 2407199 2346774 CM091764.1 scaffold1459 99.49 True indel: indel (<= 5bp) 8623029 8644960 2429555 2407288 CM091764.1 scaffold1459 99.35 True local misassembly 8514491 8622946 2541765 2429741 CM091764.1 scaffold1459 98.32 True fake: scaffold gap size wrong estimation (local) 8196910 8514040 2865893 2542449 CM091764.1 scaffold1459 98.57 True fake: scaffold gap size wrong estimation (local) 8053713 8196486 3011102 2866332 CM091764.1 scaffold1459 98.51 True fake: scaffold gap size wrong estimation (local) 8003847 8053603 3064240 3011223 CM091764.1 scaffold1459 98.65 True fake: scaffold gap size wrong estimation (local) 7935873 8003529 3136416 3065039 CM091764.1 scaffold1459 99.37 True fake: scaffold gap size wrong estimation (local) 7928479 7935691 3145647 3137293 CM091764.1 scaffold1459 98.76 True local misassembly 7925762 7929895 3149867 3145648 CM091764.1 scaffold1459 99.21 True fake: scaffold gap size wrong estimation (local) 7895522 7925671 3180311 3150073 CM091764.1 scaffold1459 99.31 True fake: scaffold gap size wrong estimation (local) 7843147 7895435 3235435 3181301 CM091764.1 scaffold1459 99.09 True fake: scaffold gap size wrong estimation (local) 7823328 7843006 3255952 3236343 CM091764.1 scaffold1459 97.01 True local misassembly 7767671 7824708 3315731 3255953 CM091764.1 scaffold1459 98.73 True fake: scaffold gap size wrong estimation (local) 7635856 7767564 3451052 3316681 CM091764.1 scaffold1459 99.44 True fake: scaffold gap size wrong estimation (local) 7548750 7634828 3538480 3452106 CM091764.1 scaffold1459 99.38 True local misassembly 7538585 7548151 3549511 3539379 CM091764.1 scaffold1459 98.03 True local misassembly 7530764 7538203 3557686 3550246 CM091764.1 scaffold1459 99.95 True CONTIG scaffold1459 3557686 correct CONTIG scaffold2371 382 unaligned CONTIG scaffold2365 514 unaligned CONTIG scaffold2373 204 unaligned CONTIG scaffold2370 378 unaligned 16046627 16047159 1 534 CM091752.1 scaffold2375 97.57 True CONTIG scaffold2375 534 correct 161693 163810 2120 1 CM091761.1 scaffold2374 99.76 True local misassembly 153176 162696 11650 2121 CM091761.1 scaffold2374 99.8 True CONTIG scaffold2374 11650 correct CONTIG scaffold2376 403 unaligned CONTIG scaffold2372 524 unaligned CONTIG scaffold2379 1070 unaligned CONTIG scaffold2378 413 unaligned CONTIG scaffold2380 637 unaligned CONTIG scaffold2381 532 unaligned CONTIG scaffold2377 724 unaligned CONTIG scaffold2384 317 unaligned CONTIG scaffold2385 464 unaligned CONTIG scaffold2386 470 unaligned CONTIG scaffold2387 358 unaligned CONTIG scaffold2382 443 unaligned CONTIG scaffold2389 336 unaligned 633702 684057 178 50902 CM091755.1 scaffold2331 99.15 True CONTIG scaffold2331 50902 correct 4341503 4342932 1498 1 CM091754.1 scaffold2390 96.39 True CONTIG scaffold2390 1498 correct CONTIG scaffold2392 455 unaligned CONTIG scaffold2391 372 unaligned CONTIG scaffold2394 392 unaligned CONTIG scaffold2367 7126 unaligned CONTIG scaffold2383 775 unaligned CONTIG scaffold2396 413 unaligned CONTIG scaffold2398 2445 unaligned CONTIG scaffold2397 60300 unaligned CONTIG scaffold2400 422 unaligned CONTIG scaffold2401 417 unaligned CONTIG scaffold2393 417 unaligned CONTIG scaffold2403 459 unaligned 9201163 9203144 1992 2 CM091763.1 scaffold2404 99.05 True CONTIG scaffold2404 1992 correct 17248418 17249252 835 1 CM091751.1 scaffold2405 99.88 True CONTIG scaffold2405 835 correct CONTIG scaffold2388 723 unaligned CONTIG scaffold2395 728 unaligned CONTIG scaffold2399 659 unaligned CONTIG scaffold2402 1013 unaligned CONTIG scaffold2406 453 unaligned CONTIG scaffold2409 391 unaligned 263418 266255 1737 4574 CM091763.1 scaffold2410 100.0 True local misassembly 266624 280993 5200 19604 CM091763.1 scaffold2410 99.7 True CONTIG scaffold2410 21564 correct CONTIG scaffold2413 405 unaligned CONTIG scaffold2414 395 unaligned CONTIG scaffold2408 615 unaligned CONTIG scaffold2407 464 unaligned CONTIG scaffold2416 388 unaligned CONTIG scaffold2412 443 unaligned CONTIG scaffold2418 547 unaligned CONTIG scaffold2417 574 unaligned 9474684 9475684 1017 1 CM091765.1 scaffold2420 97.84 True CONTIG scaffold2420 1017 correct CONTIG scaffold2422 377 unaligned CONTIG scaffold2423 353 unaligned 7525178 7528549 3374 1 CM091764.1 scaffold2424 99.94 True CONTIG scaffold2424 3374 correct CONTIG scaffold2419 487 unaligned CONTIG scaffold2421 946 unaligned 16730069 16730643 63 639 CM091752.1 scaffold2426 97.75 True CONTIG scaffold2426 715 correct CONTIG scaffold2415 679 unaligned 535670 536722 1 1053 CM091759.1 scaffold2428 96.87 True CONTIG scaffold2428 1126 correct CONTIG scaffold2425 400 unaligned 15446947 15448409 3612 5074 CM091758.1 scaffold2430 99.86 True CONTIG scaffold2430 5074 correct 15431189 15437949 993 7795 CM091757.1 scaffold2429 99.15 True CONTIG scaffold2429 7795 correct 4325240 4326540 1323 1 CM091754.1 scaffold2431 98.34 True CONTIG scaffold2431 1323 correct CONTIG scaffold2432 479 unaligned CONTIG scaffold2433 5902 unaligned CONTIG scaffold2436 1118 unaligned 16070411 16070998 584 1 CM091752.1 scaffold2437 97.45 True indel: indel (<= 5bp) 16068525 16070262 2457 732 CM091752.1 scaffold2437 97.93 True CONTIG scaffold2437 4146 correct CONTIG scaffold2438 336 unaligned CONTIG scaffold2434 379 unaligned CONTIG scaffold2439 410 unaligned CONTIG scaffold2427 445 unaligned CONTIG scaffold2435 407 unaligned 16269727 16270567 1943 1103 CM091752.1 scaffold2442 98.93 True CONTIG scaffold2442 2085 correct_unaligned 6218577 6219422 876 1 CM091768.1 scaffold2444 96.58 True CONTIG scaffold2444 876 correct CONTIG scaffold2443 365 unaligned CONTIG scaffold2445 775 unaligned CONTIG scaffold2446 387 unaligned CONTIG scaffold2447 385 unaligned 16991686 16992320 1 635 CM091752.1 scaffold2449 99.06 True CONTIG scaffold2449 635 correct CONTIG scaffold2450 382 unaligned 3225284 3226030 1 747 CM091752.1 scaffold2451 97.19 True CONTIG scaffold2451 747 correct 9868440 9892310 23928 1 CM091756.1 scaffold2441 99.11 True indel: indel (> 5bp) 9865943 9868344 26506 24086 CM091756.1 scaffold2441 97.77 True local misassembly 9866028 9867219 27824 26632 CM091756.1 scaffold2441 99.58 True CONTIG scaffold2441 27824 correct CONTIG scaffold2440 374 unaligned CONTIG scaffold2454 351 unaligned CONTIG scaffold2455 398 unaligned CONTIG scaffold2411 2174 unaligned CONTIG scaffold2457 381 unaligned 8602860 8603899 1041 1 CM091767.1 scaffold2458 99.71 True CONTIG scaffold2458 1041 correct CONTIG scaffold2452 400 unaligned CONTIG scaffold2460 432 unaligned CONTIG scaffold2461 282 unaligned 4481395 4482150 619 1374 CM091754.1 scaffold2456 98.68 True CONTIG scaffold2456 1374 correct 736659 741383 27 4769 CM091752.1 scaffold2463 98.82 True CONTIG scaffold2463 4904 correct CONTIG scaffold2464 705 unaligned CONTIG scaffold2448 430 unaligned CONTIG scaffold2465 375 unaligned 12681586 12682287 706 1 CM091752.1 scaffold2467 96.46 True CONTIG scaffold2467 706 correct CONTIG scaffold2468 483 unaligned 16947489 16948006 1 518 CM091752.1 scaffold2469 97.88 True CONTIG scaffold2469 518 correct CONTIG scaffold2470 452 unaligned CONTIG scaffold2466 3980 unaligned CONTIG scaffold2471 422 unaligned CONTIG scaffold2472 380 unaligned 16576052 16576580 529 1 CM091752.1 scaffold2473 97.92 True CONTIG scaffold2473 600 correct CONTIG scaffold2475 477 unaligned CONTIG scaffold2476 676 unaligned CONTIG scaffold2474 1052 unaligned CONTIG scaffold2459 782 unaligned CONTIG scaffold2479 416 unaligned CONTIG scaffold2478 399 unaligned CONTIG scaffold2477 349 unaligned CONTIG scaffold2482 352 unaligned CONTIG scaffold2483 353 unaligned 2008855 2104582 1 98418 CM091751.1 scaffold2341 96.6 True CONTIG scaffold2341 98429 correct CONTIG scaffold2485 448 unaligned CONTIG scaffold2484 419 unaligned 3391795 3392492 715 1 CM091752.1 scaffold2486 99.27 True CONTIG scaffold2486 715 correct CONTIG scaffold2487 705 unaligned CONTIG scaffold2489 68774 unaligned CONTIG scaffold2488 795 unaligned CONTIG scaffold2480 1197 unaligned CONTIG scaffold2492 446 unaligned CONTIG scaffold2493 386 unaligned CONTIG scaffold2491 262 unaligned CONTIG scaffold2481 2867 unaligned CONTIG scaffold2495 222 unaligned CONTIG scaffold2497 398 unaligned CONTIG scaffold2496 480 unaligned CONTIG scaffold2499 495 unaligned CONTIG scaffold2500 483 unaligned CONTIG scaffold2494 559 unaligned CONTIG scaffold2501 401 unaligned 4296510 4298132 1623 1 CM091754.1 scaffold2502 100.0 True CONTIG scaffold2502 1623 correct 319848 320494 647 1 CM091764.1 scaffold2504 100.0 True CONTIG scaffold2504 647 correct CONTIG scaffold2503 534 unaligned CONTIG scaffold2498 3330 unaligned CONTIG scaffold2505 402 unaligned 6221257 6221853 1 597 CM091768.1 scaffold2506 100.0 True CONTIG scaffold2506 597 correct 16314747 16315440 1021 328 CM091752.1 scaffold2508 97.84 True CONTIG scaffold2508 1021 correct CONTIG scaffold2509 396 unaligned CONTIG scaffold2511 221 unaligned CONTIG scaffold2512 375 unaligned 1937808 1938552 745 1 CM091764.1 scaffold2513 99.6 True CONTIG scaffold2513 745 correct CONTIG scaffold2514 5375 unaligned CONTIG scaffold2515 410 unaligned CONTIG scaffold2510 350 unaligned CONTIG scaffold2507 1619 unaligned CONTIG scaffold2518 433 unaligned CONTIG scaffold2519 458 unaligned CONTIG scaffold2520 432 unaligned CONTIG scaffold2521 442 unaligned CONTIG scaffold2522 443 unaligned CONTIG scaffold2523 408 unaligned CONTIG scaffold2517 1073 unaligned 18530059 18530749 700 1 CM091751.1 scaffold2525 95.01 True CONTIG scaffold2525 1113 correct CONTIG scaffold2526 393 unaligned 3765460 3766734 115 1390 CM091768.1 scaffold2527 99.69 True CONTIG scaffold2527 1390 correct CONTIG scaffold2462 423 unaligned CONTIG scaffold2524 480 unaligned CONTIG scaffold2528 84335 unaligned 3894970 3896269 1 1318 CM091768.1 scaffold2530 97.72 True local misassembly 3895510 3900268 1319 6123 CM091768.1 scaffold2530 98.71 True CONTIG scaffold2530 6123 correct CONTIG scaffold2532 474 unaligned CONTIG scaffold2516 4193 unaligned 12754301 12754855 736 182 CM091752.1 scaffold2533 98.38 True CONTIG scaffold2533 1088 correct 15497043 15498117 1 1075 CM091752.1 scaffold2535 99.91 True local misassembly 15498449 15500890 1853 4294 CM091752.1 scaffold2535 99.71 True local misassembly 15500548 15501168 4362 4982 CM091752.1 scaffold2535 100.0 True fake: scaffold gap size wrong estimation (local) 15501494 15503564 5234 7298 CM091752.1 scaffold2535 99.32 True local misassembly 15502356 15504297 7299 9230 CM091752.1 scaffold2535 98.92 True CONTIG scaffold2535 9230 correct CONTIG scaffold2529 900 unaligned 3617399 3620418 1 3022 CM091768.1 scaffold2537 98.91 True CONTIG scaffold2537 3054 correct CONTIG scaffold2538 393 unaligned CONTIG scaffold2534 674 unaligned CONTIG scaffold2540 391 unaligned CONTIG scaffold2539 854 unaligned CONTIG scaffold2542 455 unaligned CONTIG scaffold2543 473 unaligned CONTIG scaffold2541 427 unaligned 4247821 4252055 4235 1 CM091768.1 scaffold2544 99.93 True CONTIG scaffold2544 4235 correct 4401423 4404648 1 3277 CM091768.1 scaffold2546 98.23 True local misassembly 4403535 4406141 3278 5880 CM091768.1 scaffold2546 99.12 True CONTIG scaffold2546 5914 correct 16322085 16322682 598 1 CM091752.1 scaffold2547 99.83 True CONTIG scaffold2547 859 correct CONTIG scaffold2531 978 unaligned CONTIG scaffold2548 950 unaligned CONTIG scaffold2550 462 unaligned 9234620 9236083 1465 1 CM091763.1 scaffold2551 99.73 True fake: scaffold gap size wrong estimation (local) 9233363 9235062 3536 1837 CM091763.1 scaffold2551 98.18 True CONTIG scaffold2551 3536 correct CONTIG scaffold2536 844 unaligned CONTIG scaffold2553 432 unaligned CONTIG scaffold2554 469 unaligned CONTIG scaffold2555 330 unaligned CONTIG scaffold2545 760 unaligned 16694832 16698157 3430 1 CM091752.1 scaffold2552 95.63 True CONTIG scaffold2552 3604 correct CONTIG scaffold2558 416 unaligned CONTIG scaffold2556 664 unaligned CONTIG scaffold2557 466 unaligned 16284019 16284901 1 883 CM091752.1 scaffold2561 97.85 True CONTIG scaffold2561 883 correct CONTIG scaffold2549 417 unaligned CONTIG scaffold2560 617 unaligned CONTIG scaffold2564 386 unaligned CONTIG scaffold2565 346 unaligned 74644 75743 1 1127 CM091764.1 scaffold2566 97.34 True CONTIG scaffold2566 1127 correct CONTIG scaffold2567 405 unaligned CONTIG scaffold2563 407 unaligned CONTIG scaffold2569 373 unaligned 4304389 4304999 1 613 CM091754.1 scaffold2570 99.18 True CONTIG scaffold2570 613 correct CONTIG scaffold2562 477 unaligned CONTIG scaffold2559 414 unaligned CONTIG scaffold2574 462 unaligned CONTIG scaffold2575 317 unaligned 3724082 3725056 1 975 CM091760.1 scaffold2576 99.79 True CONTIG scaffold2576 975 correct CONTIG scaffold2571 272 unaligned CONTIG scaffold2578 283 unaligned 6643365 6644369 1 1005 CM091768.1 scaffold2577 99.4 True fake: scaffold gap size wrong estimation (local) 6644525 6645589 1991 3057 CM091768.1 scaffold2577 98.69 True CONTIG scaffold2577 3310 correct CONTIG scaffold2580 358 unaligned CONTIG scaffold2581 424 unaligned 1762343 1771724 1 9391 CM091768.1 scaffold2568 98.96 True local misassembly 1770875 1778208 9566 16888 CM091768.1 scaffold2568 97.88 True local misassembly 1777481 1778036 17302 17857 CM091768.1 scaffold2568 99.64 True indel: indel (<= 5bp) 1778057 1778691 17879 18513 CM091768.1 scaffold2568 98.74 True indel: indel (> 5bp) 1778726 1781093 18559 20926 CM091768.1 scaffold2568 99.62 True indel: indel (<= 5bp) 1781094 1781797 20928 21631 CM091768.1 scaffold2568 99.29 True indel: indel (<= 5bp) 1781798 1783569 21633 23404 CM091768.1 scaffold2568 99.66 True indel: indel (<= 5bp) 1784058 1785033 23895 24870 CM091768.1 scaffold2568 99.59 True indel: indel (<= 5bp) 1785034 1786078 24873 25917 CM091768.1 scaffold2568 98.85 True indel: indel (> 5bp) 1786095 1787651 25918 27474 CM091768.1 scaffold2568 99.36 True indel: indel (<= 5bp) 1787652 1790370 27476 30194 CM091768.1 scaffold2568 99.19 True local misassembly 1790658 1791594 31208 32144 CM091768.1 scaffold2568 99.04 True local misassembly 1793133 1794260 33267 34394 CM091768.1 scaffold2568 99.29 True fake: scaffold gap size wrong estimation (local) 1795721 1796539 36718 37536 CM091768.1 scaffold2568 95.85 True local misassembly 1796540 1798651 37787 39898 CM091768.1 scaffold2568 99.48 True indel: indel (> 5bp) 1799129 1799946 40364 41181 CM091768.1 scaffold2568 99.63 True local misassembly 1801937 1802973 42538 43574 CM091768.1 scaffold2568 99.52 True indel: indel (<= 5bp) 1802976 1803665 43575 44264 CM091768.1 scaffold2568 100.0 True indel: indel (<= 5bp) 1803668 1804388 44265 44985 CM091768.1 scaffold2568 99.86 True indel: indel (<= 5bp) 1804389 1805039 44987 45637 CM091768.1 scaffold2568 99.85 True local misassembly 1807778 1836351 48701 76572 CM091768.1 scaffold2568 95.97 True CONTIG scaffold2568 77169 correct CONTIG scaffold2579 359 unaligned CONTIG scaffold2583 454 unaligned CONTIG scaffold2573 473 unaligned 16698678 16699350 702 1 CM091752.1 scaffold2582 95.58 True CONTIG scaffold2582 702 correct CONTIG scaffold2586 412 unaligned CONTIG scaffold2588 553 unaligned CONTIG scaffold2589 361 unaligned CONTIG scaffold2590 285 unaligned CONTIG scaffold2587 700 unaligned CONTIG scaffold2592 355 unaligned CONTIG scaffold2584 409 unaligned CONTIG scaffold2585 429 unaligned CONTIG scaffold2595 610 unaligned CONTIG scaffold2591 465 unaligned CONTIG scaffold2593 428 unaligned CONTIG scaffold2598 425 unaligned CONTIG scaffold2594 371 unaligned 2147579 2152858 5285 1 CM091764.1 scaffold2597 99.68 True fake: scaffold gap size wrong estimation (local) 2142323 2147481 10824 5663 CM091764.1 scaffold2597 99.11 True fake: scaffold gap size wrong estimation (local) 2138245 2141767 17021 13366 CM091764.1 scaffold2597 99.83 True CONTIG scaffold2597 17021 correct CONTIG scaffold2596 400 unaligned 3238047 3238698 1 652 CM091752.1 scaffold2602 100.0 True CONTIG scaffold2602 652 correct CONTIG scaffold2603 456 unaligned 5568579 5569090 660 149 CM091752.1 scaffold2601 96.88 True CONTIG scaffold2601 660 correct CONTIG scaffold2605 453 unaligned 16089124 16089775 1 647 CM091752.1 scaffold2606 97.24 True CONTIG scaffold2606 745 correct CONTIG scaffold2604 424 unaligned CONTIG scaffold2608 429 unaligned 9190779 9192175 1374 1 CM091763.1 scaffold2607 98.35 True indel: indel (> 5bp) 9189144 9190717 3036 1463 CM091763.1 scaffold2607 99.36 True fake: scaffold gap size wrong estimation (local) 9185590 9188896 7039 3690 CM091763.1 scaffold2607 98.3 True CONTIG scaffold2607 7039 correct CONTIG scaffold2610 563 unaligned CONTIG scaffold2611 459 unaligned 7994164 7995337 1174 1 CM091767.1 scaffold2609 99.91 True CONTIG scaffold2609 3834 correct_unaligned CONTIG scaffold2612 651 unaligned 10908057 10949517 1 40460 CM091766.1 scaffold2614 97.35 True CONTIG scaffold2614 40460 correct 9343 9990 648 1 CM091753.1 scaffold2615 100.0 True CONTIG scaffold2615 648 correct 7913948 7914483 536 1 CM091753.1 scaffold2616 99.81 True CONTIG scaffold2616 2062 correct_unaligned CONTIG scaffold2613 745 unaligned CONTIG scaffold2618 355 unaligned CONTIG scaffold2600 420 unaligned CONTIG scaffold2599 562 unaligned CONTIG scaffold2617 409 unaligned CONTIG scaffold2620 431 unaligned 6338099 6339909 1830 1 CM091768.1 scaffold2621 98.69 True CONTIG scaffold2621 1942 correct CONTIG scaffold2623 228 unaligned CONTIG scaffold2622 544 unaligned 14156068 14156612 343 887 CM091752.1 scaffold2626 98.9 True CONTIG scaffold2626 977 correct CONTIG scaffold2627 284 unaligned CONTIG scaffold2624 334 unaligned CONTIG scaffold2629 667 unaligned CONTIG scaffold2630 427 unaligned CONTIG scaffold2631 373 unaligned CONTIG scaffold2628 337 unaligned 13672630 13707941 36181 822 CM091755.1 scaffold2632 99.26 True indel: indel (> 5bp) 13669528 13672563 39270 36237 CM091755.1 scaffold2632 99.08 True CONTIG scaffold2632 39270 correct CONTIG scaffold2634 426 unaligned CONTIG scaffold2633 4345 unaligned CONTIG scaffold2635 1608 unaligned CONTIG scaffold2637 413 unaligned CONTIG scaffold2636 410 unaligned CONTIG scaffold2639 490 unaligned CONTIG scaffold2640 334 unaligned CONTIG scaffold2638 317 unaligned 9171922 9176665 4767 1 CM091763.1 scaffold2641 99.41 True local misassembly 9169838 9170806 6100 5132 CM091763.1 scaffold2641 99.9 True indel: indel (> 5bp) 9168952 9169837 7034 6149 CM091763.1 scaffold2641 99.89 True indel: indel (> 5bp) 9167747 9168604 8305 7448 CM091763.1 scaffold2641 99.65 True local misassembly 9166234 9167746 10261 8749 CM091763.1 scaffold2641 99.87 True local misassembly 9151135 9166463 25655 10748 CM091763.1 scaffold2641 96.12 True local misassembly 9149555 9150153 27096 26498 CM091763.1 scaffold2641 99.5 True CONTIG scaffold2641 27096 correct CONTIG scaffold2643 408 unaligned CONTIG scaffold2644 318 unaligned CONTIG scaffold2645 409 unaligned CONTIG scaffold2646 427 unaligned CONTIG scaffold2647 698 unaligned CONTIG scaffold2648 411 unaligned CONTIG scaffold2625 4047 unaligned 17075901 17076587 1 687 CM091752.1 scaffold2649 99.42 True CONTIG scaffold2649 687 correct CONTIG scaffold2650 303 unaligned CONTIG scaffold2651 420 unaligned CONTIG scaffold2652 742 unaligned CONTIG scaffold2642 496 unaligned CONTIG scaffold2653 396 unaligned 3355487 3356355 904 1 CM091768.1 scaffold2656 95.91 True CONTIG scaffold2656 904 correct CONTIG scaffold2654 4038 unaligned CONTIG scaffold2658 315 unaligned CONTIG scaffold2659 379 unaligned 13036754 13040577 386 4174 CM091758.1 scaffold2453 98.69 True fake: scaffold gap size wrong estimation (local) 13041301 13081914 5575 47120 CM091758.1 scaffold2453 97.53 True local misassembly 13080145 13097976 47121 64944 CM091758.1 scaffold2453 99.79 True indel: indel (> 5bp) 13098158 13135077 65114 102332 CM091758.1 scaffold2453 99.83 True fake: scaffold gap size wrong estimation (local) 13135258 13211696 103856 180422 CM091758.1 scaffold2453 99.64 True fake: scaffold gap size wrong estimation (local) 13211861 13233759 181252 203152 CM091758.1 scaffold2453 99.7 True fake: scaffold gap size wrong estimation (local) 13233716 13241460 203772 211508 CM091758.1 scaffold2453 99.72 True CONTIG scaffold2453 211526 correct CONTIG scaffold2660 266 unaligned CONTIG scaffold2657 502 unaligned 4337538 4341688 4179 1 CM091768.1 scaffold2661 98.83 True CONTIG scaffold2661 4250 correct 15427640 15429593 1979 1 CM091757.1 scaffold2664 98.03 True CONTIG scaffold2664 1979 correct CONTIG scaffold2662 700 unaligned CONTIG scaffold2666 398 unaligned 9163737 9164554 806 1 CM091763.1 scaffold2667 98.17 True relocation, inconsistency = 16811 9135922 9145047 11812 2685 CM091763.1 scaffold2667 99.79 True CONTIG scaffold2667 11812 misassembled 4385879 4386842 993 1 CM091754.1 scaffold2668 96.07 True CONTIG scaffold2668 1126 correct CONTIG scaffold2669 381 unaligned CONTIG scaffold2655 447 unaligned CONTIG scaffold2665 669 unaligned 4465346 4465997 664 1 CM091752.1 scaffold2672 96.39 True CONTIG scaffold2672 664 correct 17023887 17024404 1 518 CM091752.1 scaffold2673 99.61 True CONTIG scaffold2673 595 correct CONTIG scaffold2674 414 unaligned CONTIG scaffold2670 422 unaligned CONTIG scaffold2676 343 unaligned CONTIG scaffold2663 750 unaligned CONTIG scaffold2671 560 unaligned CONTIG scaffold2679 389 unaligned CONTIG scaffold2677 287 unaligned CONTIG scaffold2681 337 unaligned CONTIG scaffold2680 323 unaligned CONTIG scaffold2682 706 unaligned 4368633 4370092 1 1485 CM091768.1 scaffold2684 98.25 True CONTIG scaffold2684 1485 correct 4259872 4261542 1672 1 CM091768.1 scaffold2685 98.5 True fake: scaffold gap size wrong estimation (local) 4257370 4258012 4169 3528 CM091768.1 scaffold2685 99.22 True CONTIG scaffold2685 4169 correct CONTIG scaffold2686 333 unaligned CONTIG scaffold2687 413 unaligned CONTIG scaffold2678 343 unaligned CONTIG scaffold2107 3535 unaligned CONTIG scaffold2690 400 unaligned CONTIG scaffold2675 453 unaligned CONTIG scaffold2691 401 unaligned 15750430 15751474 1 1084 CM091752.1 scaffold2693 95.44 True CONTIG scaffold2693 1084 correct CONTIG scaffold2694 48817 unaligned CONTIG scaffold2688 437 unaligned CONTIG scaffold2696 577 unaligned CONTIG scaffold2683 397 unaligned CONTIG scaffold2698 318 unaligned 17101334 17102371 1049 1 CM091752.1 scaffold2697 98.28 True CONTIG scaffold2697 1049 correct 8475056 8478917 1 3892 CM091767.1 scaffold2699 98.61 True CONTIG scaffold2699 3892 correct CONTIG scaffold2700 430 unaligned CONTIG scaffold2702 467 unaligned CONTIG scaffold2703 422 unaligned CONTIG scaffold2704 3985 unaligned 4588338 4589127 1 790 CM091762.1 scaffold2701 99.11 True fake: scaffold gap size wrong estimation (local) 4590811 4591904 2917 4016 CM091762.1 scaffold2701 97.09 True CONTIG scaffold2701 4016 correct CONTIG scaffold2706 321 unaligned 6089621 6090288 679 1 CM091754.1 scaffold2707 98.23 True CONTIG scaffold2707 679 correct 911502 912297 796 1 CM091755.1 scaffold2705 100.0 True CONTIG scaffold2705 796 correct CONTIG scaffold2708 485 unaligned 16920331 16920865 1 535 CM091752.1 scaffold2709 99.44 True CONTIG scaffold2709 535 correct CONTIG scaffold2711 346 unaligned CONTIG scaffold2710 357 unaligned CONTIG scaffold2713 329 unaligned 9246613 9250130 1 3519 CM091767.1 scaffold2714 99.86 True CONTIG scaffold2714 3519 correct CONTIG scaffold2716 385 unaligned 3839125 3839678 1 553 CM091752.1 scaffold2717 99.64 True CONTIG scaffold2717 553 correct CONTIG scaffold2712 264 unaligned CONTIG scaffold2718 366 unaligned 16906477 16908206 1 1731 CM091752.1 scaffold2719 99.71 True local misassembly 16906670 16908206 1732 3269 CM091752.1 scaffold2719 99.74 True fake: scaffold gap size wrong estimation (local) 16908939 16909938 4841 5840 CM091752.1 scaffold2719 99.9 True local misassembly 16910342 16912182 6645 8485 CM091752.1 scaffold2719 99.73 True local misassembly 16915500 16917431 8833 10766 CM091752.1 scaffold2719 99.64 True local misassembly 16916516 16917861 10767 12139 CM091752.1 scaffold2719 97.89 True local misassembly 16916855 16918846 12140 14164 CM091752.1 scaffold2719 98.02 True CONTIG scaffold2719 14164 correct CONTIG scaffold2692 856 unaligned 3397097 3397679 583 1 CM091752.1 scaffold2722 99.66 True fake: scaffold gap size wrong estimation (local) 3392855 3396509 5069 1398 CM091752.1 scaffold2722 99.35 True CONTIG scaffold2722 5069 correct CONTIG scaffold2721 443 unaligned CONTIG scaffold2724 396 unaligned 19731 21776 1 2046 CM091753.1 scaffold2725 99.9 True fake: scaffold gap size wrong estimation (local) 22270 23521 3284 4535 CM091753.1 scaffold2725 99.28 True CONTIG scaffold2725 4535 correct CONTIG scaffold2726 3511 unaligned 8870103 8876319 6278 1 CM091767.1 scaffold2727 98.76 True translocation 15536250 15537107 6279 7136 CM091757.1 scaffold2727 96.6 True CONTIG scaffold2727 7739 misassembled CONTIG scaffold2728 15985 unaligned CONTIG scaffold2720 407 unaligned CONTIG scaffold2730 580 unaligned CONTIG scaffold2731 441 unaligned CONTIG scaffold2732 465 unaligned CONTIG scaffold2733 415 unaligned CONTIG scaffold2734 330 unaligned CONTIG scaffold2729 428 unaligned CONTIG scaffold2735 385 unaligned CONTIG scaffold2737 551 unaligned CONTIG scaffold2736 345 unaligned CONTIG scaffold2739 414 unaligned 1052745 1061923 10475 1 CM091765.1 scaffold2740 98.54 True indel: indel (> 5bp) 1043827 1052512 19459 10773 CM091765.1 scaffold2740 99.24 True CONTIG scaffold2740 19470 correct CONTIG scaffold2741 450 unaligned CONTIG scaffold2742 354 unaligned 9538516 9539653 1155 1 CM091752.1 scaffold2743 97.49 True CONTIG scaffold2743 1155 correct CONTIG scaffold2744 326 unaligned CONTIG scaffold2689 356 unaligned 15608616 15609417 834 1 CM091752.1 scaffold2746 95.08 True CONTIG scaffold2746 834 correct CONTIG scaffold2747 448 unaligned CONTIG scaffold2745 727 unaligned CONTIG scaffold2749 369 unaligned 16465045 16465762 1 718 CM091752.1 scaffold2750 98.33 True CONTIG scaffold2750 718 correct CONTIG scaffold2751 428 unaligned CONTIG scaffold2752 391 unaligned CONTIG scaffold2753 301 unaligned CONTIG scaffold2754 423 unaligned CONTIG scaffold2755 389 unaligned CONTIG scaffold2756 892 unaligned CONTIG scaffold2757 703 unaligned 970780 972208 1418 1 CM091764.1 scaffold2758 99.02 True CONTIG scaffold2758 1418 correct CONTIG scaffold2759 338 unaligned CONTIG scaffold2760 435 unaligned CONTIG scaffold2761 445 unaligned CONTIG scaffold2748 1006 unaligned 2910328 2910997 670 1 CM091768.1 scaffold2763 99.85 True CONTIG scaffold2763 670 correct CONTIG scaffold2764 447 unaligned 4460910 4461460 160 710 CM091754.1 scaffold2765 100.0 True CONTIG scaffold2765 710 correct 10951162 10951806 1 646 CM091766.1 scaffold2766 96.44 True CONTIG scaffold2766 1244 correct 16464873 16465892 1 1020 CM091752.1 scaffold2767 99.9 True CONTIG scaffold2767 1020 correct 16141031 16142113 1097 1 CM091753.1 scaffold2768 97.45 True CONTIG scaffold2768 1097 correct 17128055 17128762 1 691 CM091752.1 scaffold2769 96.9 True CONTIG scaffold2769 691 correct CONTIG scaffold2770 446 unaligned CONTIG scaffold2771 409 unaligned CONTIG scaffold2772 772 unaligned CONTIG scaffold2773 406 unaligned 16184013 16184691 973 295 CM091753.1 scaffold2774 97.5 True translocation 5044256 5045544 1086 2373 CM091768.1 scaffold2774 99.46 True translocation, scaffold gap is present 12886020 12886780 2926 3682 CM091758.1 scaffold2774 97.38 True CONTIG scaffold2774 3779 misassembled CONTIG scaffold2762 291 unaligned CONTIG scaffold2776 413 unaligned CONTIG scaffold2775 408 unaligned CONTIG scaffold2777 580 unaligned CONTIG scaffold2779 480 unaligned CONTIG scaffold2780 472 unaligned CONTIG scaffold2781 417 unaligned CONTIG scaffold2778 829 unaligned CONTIG scaffold2783 4024 unaligned CONTIG scaffold2784 392 unaligned CONTIG scaffold2695 653 unaligned CONTIG scaffold2785 418 unaligned CONTIG scaffold2786 326 unaligned CONTIG scaffold2787 4257 unaligned 4249838 4257513 7674 1 CM091754.1 scaffold2789 99.88 True CONTIG scaffold2789 7674 correct CONTIG scaffold2790 452 unaligned CONTIG scaffold2782 4059 unaligned CONTIG scaffold2792 348 unaligned 15678125 15678900 1 776 CM091752.1 scaffold2793 100.0 True CONTIG scaffold2793 776 correct CONTIG scaffold2794 382 unaligned CONTIG scaffold2795 449 unaligned CONTIG scaffold2796 399 unaligned CONTIG scaffold2797 424 unaligned CONTIG scaffold2798 383 unaligned CONTIG scaffold2799 285 unaligned CONTIG scaffold2800 432 unaligned 6189908 6192218 2367 1 CM091768.1 scaffold2801 99.18 True fake: scaffold gap size wrong estimation (local) 6184630 6188754 7846 3720 CM091768.1 scaffold2801 98.96 True local misassembly 6184966 6185880 8761 7847 CM091768.1 scaffold2801 99.78 True CONTIG scaffold2801 8761 correct CONTIG scaffold2802 336 unaligned CONTIG scaffold2803 483 unaligned CONTIG scaffold2804 409 unaligned CONTIG scaffold2791 4126 unaligned CONTIG scaffold2806 451 unaligned 15657776 15660084 2309 1 CM091757.1 scaffold2805 100.0 True fake: scaffold gap size wrong estimation (local) 15655428 15657522 5297 3203 CM091757.1 scaffold2805 98.52 True indel: indel (> 5bp) 15653130 15655243 7558 5445 CM091757.1 scaffold2805 100.0 True CONTIG scaffold2805 7962 correct CONTIG scaffold2808 397 unaligned CONTIG scaffold2809 476 unaligned 16717225 16718974 7 1755 CM091752.1 scaffold2810 98.29 True fake: scaffold gap size wrong estimation (local) 16718510 16720749 2591 4827 CM091752.1 scaffold2810 97.55 True fake: scaffold gap size wrong estimation (local) 16720238 16721464 5549 6775 CM091752.1 scaffold2810 98.29 True indel: indel (> 5bp) 16721540 16722162 6863 7486 CM091752.1 scaffold2810 98.4 True CONTIG scaffold2810 7486 correct 9210484 9215386 4985 1 CM091767.1 scaffold2811 98.17 True CONTIG scaffold2811 4985 correct 3341107 3342032 1 931 CM091768.1 scaffold2812 98.28 True CONTIG scaffold2812 931 correct CONTIG scaffold2813 520 unaligned CONTIG scaffold2814 423 unaligned 1806304 1807325 1 1022 CM091764.1 scaffold2815 100.0 True CONTIG scaffold2815 1022 correct 4474435 4474945 1863 2374 CM091754.1 scaffold2816 97.46 True CONTIG scaffold2816 3336 correct_unaligned CONTIG scaffold2817 373 unaligned CONTIG scaffold2818 333 unaligned CONTIG scaffold2788 360 unaligned 14275111 14278459 3640 291 CM091752.1 scaffold2819 99.88 True CONTIG scaffold2819 3640 correct CONTIG scaffold2821 425 unaligned CONTIG scaffold2822 331 unaligned CONTIG scaffold2823 1276 unaligned 3973596 3974181 609 36 CM091767.1 scaffold2824 96.76 True CONTIG scaffold2824 609 correct CONTIG scaffold2820 1371 unaligned CONTIG scaffold2826 314 unaligned CONTIG scaffold2825 667 unaligned 5060130 5061408 12 1306 CM091764.1 scaffold2723 97.31 True fake: scaffold gap size wrong estimation (local) 5061909 5297901 2566 240599 CM091764.1 scaffold2723 98.8 True fake: scaffold gap size wrong estimation (local) 5298170 5301541 241252 244716 CM091764.1 scaffold2723 96.88 True local misassembly 5300589 5382228 244717 326942 CM091764.1 scaffold2723 99.33 True CONTIG scaffold2723 326942 correct CONTIG scaffold2829 384 unaligned CONTIG scaffold2830 286 unaligned CONTIG scaffold2831 453 unaligned 17081976 17082803 1 841 CM091752.1 scaffold2832 97.86 True CONTIG scaffold2832 841 correct CONTIG scaffold2833 486 unaligned CONTIG scaffold2827 427 unaligned CONTIG scaffold2834 3910 unaligned 15741943 15742831 889 1 CM091757.1 scaffold2836 99.89 True CONTIG scaffold2836 889 correct CONTIG scaffold2828 386 unaligned CONTIG scaffold2837 359 unaligned CONTIG scaffold2839 597 unaligned CONTIG scaffold2838 383 unaligned CONTIG scaffold2840 725 unaligned CONTIG scaffold2807 1074 unaligned CONTIG scaffold2841 441 unaligned CONTIG scaffold2842 463 unaligned CONTIG scaffold2845 731 unaligned CONTIG scaffold2846 426 unaligned CONTIG scaffold2847 680 unaligned CONTIG scaffold2848 322 unaligned CONTIG scaffold2835 899 unaligned 15528942 15531712 1 2815 CM091757.1 scaffold2849 97.87 True CONTIG scaffold2849 2815 correct 17015242 17015751 1 510 CM091752.1 scaffold2850 96.86 True CONTIG scaffold2850 589 correct 9561096 9561909 869 1 CM091752.1 scaffold2844 99.61 True CONTIG scaffold2844 869 correct 1924058 1924836 1 789 CM091764.1 scaffold2853 98.35 True CONTIG scaffold2853 789 correct CONTIG scaffold2852 354 unaligned 16276909 16277437 529 1 CM091752.1 scaffold2855 100.0 True CONTIG scaffold2855 529 correct 8597454 8598549 1661 566 CM091767.1 scaffold2854 100.0 True CONTIG scaffold2854 1661 correct CONTIG scaffold2851 363 unaligned CONTIG scaffold2857 414 unaligned CONTIG scaffold2858 388 unaligned 2891529 2892571 1043 1 CM091752.1 scaffold2859 99.9 True fake: scaffold gap size wrong estimation (local) 2887977 2890198 6372 4139 CM091752.1 scaffold2859 99.37 True fake: scaffold gap size wrong estimation (local) 2884181 2886812 9744 7100 CM091752.1 scaffold2859 99.4 True CONTIG scaffold2859 9753 correct 11002426 11003270 875 31 CM091756.1 scaffold2856 99.29 True local misassembly 11000452 11001570 1994 876 CM091756.1 scaffold2856 99.46 True indel: indel (<= 5bp) 10999550 11000451 2897 1996 CM091756.1 scaffold2856 98.78 True indel: indel (> 5bp) 10998676 10999475 3785 2986 CM091756.1 scaffold2856 99.62 True indel: indel (<= 5bp) 10997716 10998675 4747 3788 CM091756.1 scaffold2856 99.69 True indel: indel (> 5bp) 10996884 10997499 5587 4972 CM091756.1 scaffold2856 99.51 True indel: stretch of mismatches 10995907 10996836 6564 5635 CM091756.1 scaffold2856 99.35 True local misassembly 10994642 10995296 7834 7180 CM091756.1 scaffold2856 99.85 True indel: indel (<= 5bp) 10993813 10994491 8659 7981 CM091756.1 scaffold2856 99.26 True indel: indel (> 5bp) 10992557 10993378 9922 9101 CM091756.1 scaffold2856 99.27 True indel: indel (> 5bp) 10990243 10992544 12301 10000 CM091756.1 scaffold2856 99.35 True indel: indel (> 5bp) 10989626 10990212 12926 12340 CM091756.1 scaffold2856 99.83 True indel: indel (<= 5bp) 10988488 10989220 14065 13333 CM091756.1 scaffold2856 99.18 True indel: indel (> 5bp) 10987657 10988380 14906 14183 CM091756.1 scaffold2856 99.72 True local misassembly 10966076 10987225 36945 15409 CM091756.1 scaffold2856 95.44 True CONTIG scaffold2856 36945 correct CONTIG scaffold2860 431 unaligned CONTIG scaffold2863 411 unaligned 15480485 15481381 1 897 CM091752.1 scaffold2861 99.89 True local misassembly 15482082 15483853 1926 3694 CM091752.1 scaffold2861 98.81 True local misassembly 15483697 15485548 4326 6185 CM091752.1 scaffold2861 99.41 True CONTIG scaffold2861 6188 correct CONTIG scaffold2865 1308 unaligned 6088602 6089321 734 1 CM091754.1 scaffold2866 97.28 True CONTIG scaffold2866 734 correct CONTIG scaffold2867 368 unaligned CONTIG scaffold2868 372 unaligned CONTIG scaffold2869 416 unaligned CONTIG scaffold2843 1076 unaligned CONTIG scaffold2870 431 unaligned 6342909 6345923 902 3988 CM091768.1 scaffold2864 96.66 True CONTIG scaffold2864 3988 correct CONTIG scaffold2873 487 unaligned CONTIG scaffold2874 432 unaligned 3320188 3322946 2768 1 CM091768.1 scaffold2871 99.1 True CONTIG scaffold2871 2768 correct CONTIG scaffold2875 439 unaligned CONTIG scaffold2877 438 unaligned CONTIG scaffold2878 388 unaligned CONTIG scaffold2879 377 unaligned CONTIG scaffold2876 553 unaligned 6683020 6685966 15 2965 CM091767.1 scaffold2880 98.21 True relocation, inconsistency = -18372 6667799 6671958 3170 7355 CM091767.1 scaffold2880 98.49 True CONTIG scaffold2880 7382 misassembled 12312966 12321047 45 8132 CM091761.1 scaffold2881 99.49 True fake: scaffold gap size wrong estimation (local) 12326486 12327463 9499 10496 CM091761.1 scaffold2881 95.69 True CONTIG scaffold2881 10496 correct CONTIG scaffold2882 351 unaligned CONTIG scaffold2884 424 unaligned CONTIG scaffold2885 1137 unaligned CONTIG scaffold2886 443 unaligned CONTIG scaffold2887 462 unaligned 25084 25706 1 623 CM091760.1 scaffold2888 99.52 True CONTIG scaffold2888 623 correct 7201033 7201736 1 703 CM091758.1 scaffold2889 98.44 True CONTIG scaffold2889 703 correct CONTIG scaffold2883 484 unaligned CONTIG scaffold2890 328 unaligned CONTIG scaffold2892 536 unaligned 6139077 6140143 1 1114 CM091768.1 scaffold2891 95.08 True CONTIG scaffold2891 1114 correct CONTIG scaffold2893 427 unaligned 6664668 6665350 686 1 CM091768.1 scaffold2895 98.98 True CONTIG scaffold2895 686 correct CONTIG scaffold2896 434 unaligned CONTIG scaffold2872 382 unaligned 15579446 15580178 744 1 CM091752.1 scaffold2898 97.18 True CONTIG scaffold2898 744 correct CONTIG scaffold2899 631 unaligned CONTIG scaffold2897 452 unaligned 16570157 16573099 1 2944 CM091753.1 scaffold2901 99.56 True local misassembly 16571672 16572671 2945 3944 CM091753.1 scaffold2901 99.6 True CONTIG scaffold2901 3944 correct CONTIG scaffold2902 656 unaligned CONTIG scaffold2903 399 unaligned CONTIG scaffold2904 407 unaligned CONTIG scaffold2900 212 unaligned 5397281 5397939 1 675 CM091764.1 scaffold2906 96.46 True CONTIG scaffold2906 675 correct 2343464 2346038 2570 1 CM091767.1 scaffold2907 98.37 True local misassembly 2343750 2344818 3641 2571 CM091767.1 scaffold2907 99.25 True CONTIG scaffold2907 3641 correct 6387945 6388812 868 1 CM091768.1 scaffold2908 100.0 True CONTIG scaffold2908 868 correct 4354196 4354909 730 1 CM091768.1 scaffold2909 97.54 True CONTIG scaffold2909 730 correct 1371449 1373038 1 1590 CM091755.1 scaffold2905 99.87 True relocation, scaffold gap is present, inconsistency = 15504 1348742 1355294 8797 2241 CM091755.1 scaffold2905 99.88 True CONTIG scaffold2905 8797 misassembled CONTIG scaffold2911 413 unaligned 6684464 6689660 68 5277 CM091755.1 scaffold2912 99.21 True CONTIG scaffold2912 5277 correct CONTIG scaffold2913 389 unaligned CONTIG scaffold2914 230 unaligned CONTIG scaffold2894 1219 unaligned CONTIG scaffold2910 822 unaligned 11457765 11458354 742 153 CM091765.1 scaffold2915 95.93 True CONTIG scaffold2915 1334 correct_unaligned CONTIG scaffold2917 425 unaligned CONTIG scaffold2919 308 unaligned CONTIG scaffold2916 705 unaligned 12934832 12943701 1 8888 CM091753.1 scaffold2920 99.22 True CONTIG scaffold2920 8888 correct CONTIG scaffold2922 369 unaligned CONTIG scaffold2921 308 unaligned CONTIG scaffold2923 289 unaligned CONTIG scaffold2925 342 unaligned 6332465 6332969 505 1 CM091768.1 scaffold2924 100.0 True CONTIG scaffold2924 505 correct 9240365 9241036 1 684 CM091763.1 scaffold2927 97.95 True CONTIG scaffold2927 684 correct CONTIG scaffold2928 395 unaligned CONTIG scaffold2929 513 unaligned CONTIG scaffold2926 746 unaligned CONTIG scaffold2862 1091 unaligned CONTIG scaffold2918 733 unaligned CONTIG scaffold2933 1682 unaligned CONTIG scaffold2932 501 unaligned CONTIG scaffold2935 453 unaligned CONTIG scaffold2936 406 unaligned 1412595 1413115 1 521 CM091764.1 scaffold2937 99.81 True CONTIG scaffold2937 521 correct 8805342 8807024 1684 1 CM091767.1 scaffold2934 99.94 True local misassembly 8802851 8806072 4906 1685 CM091767.1 scaffold2934 99.91 True CONTIG scaffold2934 4906 correct CONTIG scaffold2938 530 unaligned CONTIG scaffold2940 477 unaligned CONTIG scaffold2930 261 unaligned CONTIG scaffold2941 627 unaligned 16295390 16296054 665 1 CM091752.1 scaffold2943 100.0 True CONTIG scaffold2943 665 correct CONTIG scaffold2942 446 unaligned CONTIG scaffold2939 436 unaligned CONTIG scaffold2945 796 unaligned CONTIG scaffold2947 836 unaligned CONTIG scaffold2948 471 unaligned CONTIG scaffold2946 439 unaligned 11210628 11211517 890 1 CM091765.1 scaffold2950 100.0 True CONTIG scaffold2950 890 correct 16470177 16471016 838 1 CM091752.1 scaffold2951 96.91 True CONTIG scaffold2951 838 correct 16243066 16243641 916 341 CM091752.1 scaffold2952 97.57 True CONTIG scaffold2952 916 correct CONTIG scaffold2944 653 unaligned 11531176 11535659 1 4522 CM091765.1 scaffold2953 99.07 True CONTIG scaffold2953 4522 correct 9819949 9820770 1 822 CM091752.1 scaffold2955 99.03 True CONTIG scaffold2955 824 correct CONTIG scaffold2956 320 unaligned 8169401 8174699 625 5924 CM091767.1 scaffold2954 99.96 True local misassembly 8174117 8176640 6074 8597 CM091767.1 scaffold2954 99.6 True CONTIG scaffold2954 8597 correct CONTIG scaffold2949 554 unaligned CONTIG scaffold2959 389 unaligned 3783458 3786468 3002 1 CM091752.1 scaffold2957 99.1 True fake: scaffold gap size wrong estimation (local) 3781183 3783033 6402 4552 CM091752.1 scaffold2957 99.03 True CONTIG scaffold2957 6402 correct CONTIG scaffold2958 436 unaligned 2968907 2974527 1 5382 CM091752.1 scaffold2962 95.64 True CONTIG scaffold2962 5395 correct CONTIG scaffold2961 428 unaligned 2919016 2919898 1 884 CM091768.1 scaffold2964 99.21 True CONTIG scaffold2964 964 correct CONTIG scaffold2965 311 unaligned 4977087 4978554 1 1476 CM091768.1 scaffold2966 99.12 True CONTIG scaffold2966 1476 correct CONTIG scaffold2967 378 unaligned CONTIG scaffold2968 578 unaligned CONTIG scaffold2960 831 unaligned 7956711 7958374 1 1664 CM091767.1 scaffold2970 100.0 True CONTIG scaffold2970 1664 correct CONTIG scaffold2971 273 unaligned CONTIG scaffold2972 499 unaligned CONTIG scaffold2931 336 unaligned CONTIG scaffold2969 474 unaligned CONTIG scaffold2973 437 unaligned CONTIG scaffold2975 294 unaligned 3837818 3838662 1 845 CM091752.1 scaffold2977 99.88 True CONTIG scaffold2977 845 correct CONTIG scaffold2976 381 unaligned CONTIG scaffold2979 406 unaligned CONTIG scaffold2980 323 unaligned CONTIG scaffold2981 654 unaligned CONTIG scaffold2982 313 unaligned CONTIG scaffold2983 389 unaligned CONTIG scaffold2984 359 unaligned CONTIG scaffold2978 341 unaligned CONTIG scaffold2985 623 unaligned CONTIG scaffold2987 448 unaligned CONTIG scaffold2963 869 unaligned CONTIG scaffold2989 362 unaligned CONTIG scaffold2990 475 unaligned CONTIG scaffold2991 476 unaligned CONTIG scaffold2992 320 unaligned CONTIG scaffold2986 680 unaligned CONTIG scaffold2988 552 unaligned CONTIG scaffold2995 363 unaligned 13453856 13458694 318 5566 CM091758.1 scaffold2996 97.47 True CONTIG scaffold2996 5568 correct 6285259 6286399 3710 4856 CM091768.1 scaffold2993 99.3 True CONTIG scaffold2993 4856 correct CONTIG scaffold2997 660 unaligned CONTIG scaffold2999 397 unaligned CONTIG scaffold3000 347 unaligned CONTIG scaffold2994 317 unaligned CONTIG scaffold3002 326 unaligned CONTIG scaffold2998 339 unaligned 16176936 16177562 1 657 CM091757.1 scaffold3004 100.0 True CONTIG scaffold3004 657 correct CONTIG scaffold3005 391 unaligned 3816681 3817632 952 1 CM091768.1 scaffold3006 99.68 True CONTIG scaffold3006 1088 correct CONTIG scaffold3007 495 unaligned CONTIG scaffold3008 606 unaligned 16720395 16721189 808 1 CM091752.1 scaffold3009 97.4 True CONTIG scaffold3009 808 correct CONTIG scaffold3001 364 unaligned CONTIG scaffold3003 367 unaligned CONTIG scaffold3011 358 unaligned CONTIG scaffold3012 511 unaligned CONTIG scaffold3010 486 unaligned 3760185 3761057 1 873 CM091752.1 scaffold3013 98.97 True CONTIG scaffold3013 885 correct CONTIG scaffold3016 355 unaligned 6697607 6698165 1 604 CM091768.1 scaffold3017 97.12 True CONTIG scaffold3017 604 correct 6483444 6484140 706 1 CM091768.1 scaffold3018 98.73 True CONTIG scaffold3018 706 correct 16885163 16885766 1 593 CM091752.1 scaffold3019 98.01 True CONTIG scaffold3019 593 correct 17247974 17250681 1 2708 CM091751.1 scaffold3015 99.93 True local misassembly 17249570 17251964 2709 5121 CM091751.1 scaffold3015 99.25 True fake: scaffold gap size wrong estimation (local) 17252132 17259203 5633 12705 CM091751.1 scaffold3015 99.94 True fake: scaffold gap size wrong estimation (local) 17258894 17260821 13052 14977 CM091751.1 scaffold3015 99.84 True CONTIG scaffold3015 14977 correct CONTIG scaffold3021 421 unaligned 11093865 11094928 1 1063 CM091765.1 scaffold3022 99.72 True CONTIG scaffold3022 1063 correct CONTIG scaffold3023 315 unaligned CONTIG scaffold3020 327 unaligned CONTIG scaffold3025 357 unaligned CONTIG scaffold3026 403 unaligned 4037489 4038169 698 1 CM091752.1 scaffold3027 96.85 True CONTIG scaffold3027 698 correct CONTIG scaffold3028 445 unaligned CONTIG scaffold3024 750 unaligned CONTIG scaffold3030 372 unaligned 2851777 2852300 1 524 CM091751.1 scaffold3031 99.24 True CONTIG scaffold3031 524 correct 1923703 1924836 1145 1 CM091764.1 scaffold3032 97.47 True CONTIG scaffold3032 1145 correct CONTIG scaffold3033 474 unaligned CONTIG scaffold3034 344 unaligned CONTIG scaffold3014 431 unaligned 4313603 4314263 1 662 CM091752.1 scaffold3036 97.89 True fake: scaffold gap size wrong estimation (local) 4314840 4315367 2495 3022 CM091752.1 scaffold3036 97.92 True CONTIG scaffold3036 3022 correct CONTIG scaffold3029 402 unaligned 1939647 1940307 1 662 CM091764.1 scaffold3038 99.7 True CONTIG scaffold3038 662 correct CONTIG scaffold3037 433 unaligned CONTIG scaffold3040 427 unaligned CONTIG scaffold3041 400 unaligned CONTIG scaffold3039 374 unaligned 4123707 4128493 1 4820 CM091768.1 scaffold3043 98.47 True CONTIG scaffold3043 5314 correct CONTIG scaffold3044 466 unaligned CONTIG scaffold3045 411 unaligned CONTIG scaffold3046 456 unaligned CONTIG scaffold3047 1278 unaligned 15314027 15314530 503 1 CM091752.1 scaffold3048 98.02 True CONTIG scaffold3048 503 correct CONTIG scaffold3035 718 unaligned 8226563 8350413 1 124485 CM091766.1 scaffold2738 99.57 True indel: indel (> 5bp) 8350566 8367569 124562 143318 CM091766.1 scaffold2738 99.64 True fake: scaffold gap size wrong estimation (local) 8367685 8378404 143442 154442 CM091766.1 scaffold2738 98.86 True fake: scaffold gap size wrong estimation (local) 8378396 8384857 154548 161391 CM091766.1 scaffold2738 97.68 True fake: scaffold gap size wrong estimation (local) 8385107 8409682 161567 190056 CM091766.1 scaffold2738 99.51 True fake: scaffold gap size wrong estimation (local) 8409981 8411826 190492 192338 CM091766.1 scaffold2738 99.84 True fake: scaffold gap size wrong estimation (local) 8411980 8429236 193300 212222 CM091766.1 scaffold2738 99.75 True fake: scaffold gap size wrong estimation (local) 8429349 8436865 212850 220688 CM091766.1 scaffold2738 99.55 True fake: scaffold gap size wrong estimation (local) 8437279 8459063 221358 243382 CM091766.1 scaffold2738 99.51 True CONTIG scaffold2738 243382 correct CONTIG scaffold3051 359 unaligned CONTIG scaffold3052 1433 unaligned 4421061 4421733 1 670 CM091752.1 scaffold3053 96.59 True CONTIG scaffold3053 670 correct 4317114 4318363 1255 1 CM091754.1 scaffold3054 99.44 True CONTIG scaffold3054 1255 correct CONTIG scaffold3049 330 unaligned 7465263 7468060 2804 1 CM091764.1 scaffold3055 99.47 True CONTIG scaffold3055 2860 correct CONTIG scaffold3057 403 unaligned CONTIG scaffold3056 378 unaligned CONTIG scaffold3058 678 unaligned 7081811 7116527 35066 373 CM091757.1 scaffold3042 99.68 True indel: indel (> 5bp) 7066040 7081626 50809 35204 CM091757.1 scaffold3042 99.24 True indel: indel (> 5bp) 7064966 7065916 51922 50969 CM091757.1 scaffold3042 99.37 True indel: indel (> 5bp) 7055561 7064910 61323 51971 CM091757.1 scaffold3042 98.98 True indel: indel (> 5bp) 7036103 7055525 81466 61399 CM091757.1 scaffold3042 99.4 True local misassembly 7016606 7037059 102180 81467 CM091757.1 scaffold3042 98.08 True fake: scaffold gap size wrong estimation (local) 7007348 7016389 111820 102754 CM091757.1 scaffold3042 99.03 True CONTIG scaffold3042 111820 correct 4153781 4154409 1 629 CM091768.1 scaffold3061 100.0 True CONTIG scaffold3061 629 correct CONTIG scaffold3059 329 unaligned 8240142 8240916 779 1 CM091767.1 scaffold3062 98.46 True CONTIG scaffold3062 779 correct CONTIG scaffold3063 450 unaligned CONTIG scaffold3065 573 unaligned CONTIG scaffold3064 481 unaligned CONTIG scaffold3066 486 unaligned CONTIG scaffold3050 381 unaligned CONTIG scaffold3067 422 unaligned 12779115 12781771 2656 1 CM091753.1 scaffold3068 99.44 True CONTIG scaffold3068 2656 correct CONTIG scaffold3060 627 unaligned 3891641 3892795 1156 1 CM091768.1 scaffold3070 99.83 True CONTIG scaffold3070 1156 correct CONTIG scaffold3071 1083 unaligned CONTIG scaffold3072 426 unaligned CONTIG scaffold3069 386 unaligned CONTIG scaffold3076 380 unaligned CONTIG scaffold3074 382 unaligned CONTIG scaffold3078 333 unaligned 6439714 6440722 1010 1 CM091768.1 scaffold3079 97.48 True CONTIG scaffold3079 1010 correct 4259342 4259997 656 1 CM091768.1 scaffold3080 99.39 True CONTIG scaffold3080 656 correct CONTIG scaffold3073 388 unaligned CONTIG scaffold3081 366 unaligned 2904453 2905408 1 956 CM091752.1 scaffold3083 100.0 True CONTIG scaffold3083 956 correct 5683514 5752457 73719 2950 CM091764.1 scaffold2974 99.42 True local misassembly 5450712 5683713 310302 74200 CM091764.1 scaffold2974 99.09 True local misassembly 5426486 5453154 336934 310303 CM091764.1 scaffold2974 99.47 True relocation, inconsistency = 32516 5392723 5393969 336935 338160 CM091764.1 scaffold2974 99.01 True CONTIG scaffold2974 338477 misassembled CONTIG scaffold3077 410 unaligned 11044856 11059341 14974 487 CM091766.1 scaffold3085 99.68 True indel: indel (<= 5bp) 11033268 11044790 26696 15036 CM091766.1 scaffold3085 99.67 True fake: scaffold gap size wrong estimation (local) 11018000 11032743 42124 27377 CM091766.1 scaffold3085 99.68 True CONTIG scaffold3085 42124 correct CONTIG scaffold3086 541 unaligned 2869396 2871187 1855 1 CM091762.1 scaffold3087 96.34 True CONTIG scaffold3087 1855 correct CONTIG scaffold3088 326 unaligned CONTIG scaffold3090 432 unaligned CONTIG scaffold3075 572 unaligned 9189382 9192526 3147 1 CM091767.1 scaffold3092 99.49 True CONTIG scaffold3092 3147 correct 4204177 4212022 8208 1 CM091754.1 scaffold3082 95.52 True local misassembly 4202242 4204748 10710 8209 CM091754.1 scaffold3082 99.36 True fake: scaffold gap size wrong estimation (local) 4200990 4201589 12247 11648 CM091754.1 scaffold3082 99.67 True CONTIG scaffold3082 12247 correct 7932556 7933272 717 1 CM091767.1 scaffold3094 100.0 True CONTIG scaffold3094 717 correct CONTIG scaffold3089 417 unaligned CONTIG scaffold3095 313 unaligned CONTIG scaffold3096 413 unaligned CONTIG scaffold3097 569 unaligned 4101952 4108381 1 6435 CM091768.1 scaffold3091 99.43 True CONTIG scaffold3091 6435 correct 13245847 13246539 704 12 CM091752.1 scaffold3098 97.84 True CONTIG scaffold3098 1094 correct CONTIG scaffold3101 426 unaligned CONTIG scaffold3102 462 unaligned CONTIG scaffold3103 379 unaligned CONTIG scaffold3084 319 unaligned CONTIG scaffold3100 499 unaligned CONTIG scaffold3106 345 unaligned CONTIG scaffold3107 350 unaligned CONTIG scaffold3104 409 unaligned CONTIG scaffold3105 773 unaligned CONTIG scaffold3108 329 unaligned CONTIG scaffold3109 422 unaligned CONTIG scaffold3112 445 unaligned 5212706 5223045 80 10544 CM091761.1 scaffold3111 98.75 True CONTIG scaffold3111 10544 correct 49256 53718 4461 1 CM091752.1 scaffold3114 99.87 True CONTIG scaffold3114 4461 correct CONTIG scaffold3093 521 unaligned 6267110 6268083 1152 183 CM091768.1 scaffold3115 97.02 True CONTIG scaffold3115 1156 correct CONTIG scaffold3116 415 unaligned CONTIG scaffold3118 352 unaligned CONTIG scaffold3119 328 unaligned 11200274 11203561 3289 1 CM091766.1 scaffold3120 99.24 True CONTIG scaffold3120 3289 correct CONTIG scaffold3117 453 unaligned 16058865 16059418 568 1 CM091752.1 scaffold3122 96.13 True CONTIG scaffold3122 579 correct CONTIG scaffold3121 305 unaligned CONTIG scaffold3124 391 unaligned CONTIG scaffold3125 523 unaligned CONTIG scaffold3099 434 unaligned CONTIG scaffold3127 462 unaligned CONTIG scaffold3123 740 unaligned CONTIG scaffold3128 444 unaligned CONTIG scaffold3130 413 unaligned CONTIG scaffold3131 380 unaligned CONTIG scaffold3129 386 unaligned CONTIG scaffold3133 689 unaligned CONTIG scaffold3134 532 unaligned CONTIG scaffold3135 834 unaligned CONTIG scaffold3126 417 unaligned CONTIG scaffold3136 335 unaligned CONTIG scaffold3138 364 unaligned CONTIG scaffold3132 355 unaligned CONTIG scaffold3139 405 unaligned CONTIG scaffold3110 643 unaligned CONTIG scaffold3141 424 unaligned CONTIG scaffold3143 413 unaligned CONTIG scaffold3142 403 unaligned CONTIG scaffold3145 417 unaligned CONTIG scaffold3146 422 unaligned CONTIG scaffold3147 442 unaligned 5336692 5337200 509 1 CM091754.1 scaffold3148 100.0 True CONTIG scaffold3148 509 correct 16466427 16469634 1 3218 CM091752.1 scaffold3149 99.04 True CONTIG scaffold3149 3218 correct CONTIG scaffold3144 834 unaligned CONTIG scaffold3137 688 unaligned CONTIG scaffold3152 487 unaligned CONTIG scaffold3151 436 unaligned CONTIG scaffold3153 586 unaligned CONTIG scaffold3155 413 unaligned 2932617 2933155 539 1 CM091762.1 scaffold3156 98.89 True CONTIG scaffold3156 539 correct 20607 21145 539 1 CM091753.1 scaffold3157 100.0 True CONTIG scaffold3157 539 correct CONTIG scaffold3140 7758 unaligned 1368914 1369565 672 1 CM091764.1 scaffold3159 96.88 True CONTIG scaffold3159 672 correct CONTIG scaffold3154 363 unaligned CONTIG scaffold3161 419 unaligned CONTIG scaffold3158 461 unaligned CONTIG scaffold3160 473 unaligned CONTIG scaffold3162 893 unaligned 15281962 15282711 1 750 CM091752.1 scaffold3165 99.87 True CONTIG scaffold3165 750 correct CONTIG scaffold3166 705 unaligned CONTIG scaffold3164 645 unaligned 7810541 7811571 1 1053 CM091767.1 scaffold3167 96.56 True fake: scaffold gap size wrong estimation (local) 7812112 7813656 2830 4373 CM091767.1 scaffold3167 99.81 True CONTIG scaffold3167 4373 correct 15630849 15640955 10156 1 CM091757.1 scaffold3168 99.46 True CONTIG scaffold3168 10156 correct CONTIG scaffold3170 355 unaligned CONTIG scaffold3171 472 unaligned CONTIG scaffold3172 558 unaligned 5338719 5339215 1 508 CM091754.1 scaffold3173 97.83 True CONTIG scaffold3173 508 correct CONTIG scaffold3150 396 unaligned CONTIG scaffold3175 359 unaligned 14268954 14269918 965 1 CM091758.1 scaffold3176 99.79 True CONTIG scaffold3176 1070 correct CONTIG scaffold3174 710 unaligned CONTIG scaffold3163 637 unaligned CONTIG scaffold3178 308 unaligned 2893100 2893815 1 716 CM091762.1 scaffold3180 100.0 True CONTIG scaffold3180 716 correct CONTIG scaffold3179 565 unaligned CONTIG scaffold3181 448 unaligned CONTIG scaffold3182 547 unaligned CONTIG scaffold3184 682 unaligned CONTIG scaffold3185 444 unaligned CONTIG scaffold3186 353 unaligned 4274923 4286928 330 12333 CM091754.1 scaffold3187 99.98 True CONTIG scaffold3187 16631 correct CONTIG scaffold3188 437 unaligned CONTIG scaffold3189 721 unaligned 7955095 7956134 1040 1 CM091767.1 scaffold3190 100.0 True CONTIG scaffold3190 1040 correct 396003 397120 1118 1 CM091764.1 scaffold3113 99.82 True CONTIG scaffold3113 1284 correct 11446615 11447570 1 957 CM091765.1 scaffold3192 99.58 True CONTIG scaffold3192 957 correct 11299810 11300401 1 592 CM091766.1 scaffold3177 100.0 True CONTIG scaffold3177 1228 correct_unaligned CONTIG scaffold3194 413 unaligned CONTIG scaffold3195 4244 unaligned CONTIG scaffold3191 804 unaligned CONTIG scaffold3197 479 unaligned 6251327 6252069 757 1 CM091768.1 scaffold3198 97.1 True CONTIG scaffold3198 757 correct CONTIG scaffold3196 316 unaligned CONTIG scaffold3200 394 unaligned 15863546 15864763 4789 6006 CM091757.1 scaffold3193 95.65 True unknown 15864764 15865379 6029 6644 CM091757.1 scaffold3193 95.13 True unknown CONTIG scaffold3193 6644 mis_unaligned 16682158 16682811 654 1 CM091752.1 scaffold3202 99.85 True CONTIG scaffold3202 654 correct CONTIG scaffold3201 422 unaligned CONTIG scaffold3203 413 unaligned 16241037 16241539 503 1 CM091752.1 scaffold3205 99.8 True CONTIG scaffold3205 503 correct CONTIG scaffold3199 820 unaligned 4313347 4315904 2558 1 CM091768.1 scaffold3204 99.92 True local misassembly 4313497 4314291 3714 2920 CM091768.1 scaffold3204 100.0 True CONTIG scaffold3204 3714 correct CONTIG scaffold3206 355 unaligned 4459640 4460179 1 540 CM091754.1 scaffold3208 99.63 True CONTIG scaffold3208 540 correct CONTIG scaffold3210 311 unaligned CONTIG scaffold3211 477 unaligned CONTIG scaffold3209 525 unaligned CONTIG scaffold3213 481 unaligned CONTIG scaffold3214 335 unaligned CONTIG scaffold3215 495 unaligned 12313080 12315186 1 2173 CM091756.1 scaffold3212 96.18 True CONTIG scaffold3212 2173 correct 4189483 4190212 1 746 CM091768.1 scaffold3216 97.72 True CONTIG scaffold3216 756 correct 6572025 6682586 110570 1 CM091751.1 scaffold2619 99.51 True local misassembly 6551095 6571667 131724 111046 CM091751.1 scaffold2619 99.19 True local misassembly 6526300 6550636 156710 132481 CM091751.1 scaffold2619 98.35 True indel: indel (<= 5bp) 6479982 6526257 202991 156752 CM091751.1 scaffold2619 98.86 True indel: indel (> 5bp) 6462237 6479852 220774 203138 CM091751.1 scaffold2619 99.51 True indel: indel (> 5bp) 6315401 6462171 368492 220818 CM091751.1 scaffold2619 98.63 True indel: indel (> 5bp) 6296280 6315316 387849 368593 CM091751.1 scaffold2619 95.83 True local misassembly 6178825 6297261 508310 387867 CM091751.1 scaffold2619 98.46 True local misassembly 6162690 6178107 524537 509061 CM091751.1 scaffold2619 98.79 True local misassembly 6107321 6163275 580890 524538 CM091751.1 scaffold2619 98.58 True indel: indel (> 5bp) 6104919 6107280 583305 580946 CM091751.1 scaffold2619 99.45 True indel: indel (<= 5bp) 6033370 6104838 655644 583388 CM091751.1 scaffold2619 99.11 True indel: indel (> 5bp) 5972727 6033231 717692 655806 CM091751.1 scaffold2619 98.45 True indel: indel (> 5bp) 5865593 5972645 826405 717825 CM091751.1 scaffold2619 99.16 True CONTIG scaffold2619 826444 correct 4229025 4229970 1 978 CM091768.1 scaffold3207 96.01 True CONTIG scaffold3207 978 correct CONTIG scaffold3219 441 unaligned CONTIG scaffold3220 394 unaligned CONTIG scaffold3221 330 unaligned CONTIG scaffold3222 3811 unaligned 15123270 15124130 1 861 CM091752.1 scaffold3224 100.0 True CONTIG scaffold3224 861 correct 3971673 3973975 2298 1 CM091752.1 scaffold3225 99.48 True CONTIG scaffold3225 2298 correct CONTIG scaffold3183 1009 unaligned CONTIG scaffold3227 446 unaligned 16437411 16437944 1 538 CM091752.1 scaffold3228 98.7 True CONTIG scaffold3228 538 correct CONTIG scaffold3229 437 unaligned CONTIG scaffold3231 457 unaligned CONTIG scaffold3232 688 unaligned CONTIG scaffold3233 364 unaligned CONTIG scaffold3234 392 unaligned 15552497 15555592 419 3531 CM091757.1 scaffold3230 99.29 True fake: scaffold gap size wrong estimation (local) 15555767 15556823 3741 4797 CM091757.1 scaffold3230 100.0 True CONTIG scaffold3230 4797 correct CONTIG scaffold3236 395 unaligned CONTIG scaffold3235 3336 unaligned CONTIG scaffold3223 564 unaligned CONTIG scaffold3238 404 unaligned CONTIG scaffold3240 372 unaligned 1938221 1940961 1 2738 CM091764.1 scaffold3241 97.05 True CONTIG scaffold3241 2738 correct CONTIG scaffold3237 796 unaligned CONTIG scaffold3243 432 unaligned 3626201 3630275 4160 1 CM091768.1 scaffold3244 97.84 True local misassembly 3625365 3626843 5676 4198 CM091768.1 scaffold3244 100.0 True CONTIG scaffold3244 5676 correct CONTIG scaffold3245 333 unaligned CONTIG scaffold3246 350 unaligned 211448 212162 715 1 CM091753.1 scaffold3247 99.86 True CONTIG scaffold3247 715 correct CONTIG scaffold3242 391 unaligned 15871188 15871896 1 709 CM091757.1 scaffold3249 100.0 True CONTIG scaffold3249 709 correct CONTIG scaffold3250 449 unaligned CONTIG scaffold3251 707 unaligned CONTIG scaffold3218 356 unaligned CONTIG scaffold3252 261 unaligned CONTIG scaffold3254 362 unaligned CONTIG scaffold3255 349 unaligned 540494 542159 626 2286 CM091764.1 scaffold3256 99.58 True indel: indel (> 5bp) 542306 543971 2446 4111 CM091764.1 scaffold3256 99.94 True CONTIG scaffold3256 5588 correct CONTIG scaffold3248 338 unaligned CONTIG scaffold3258 662 unaligned CONTIG scaffold3259 367 unaligned CONTIG scaffold3260 382 unaligned CONTIG scaffold3253 442 unaligned CONTIG scaffold3262 351 unaligned CONTIG scaffold3263 607 unaligned 3638325 3639638 2006 693 CM091768.1 scaffold3264 98.93 True local misassembly 3637562 3638193 2969 2338 CM091768.1 scaffold3264 97.47 True local misassembly 3637648 3638176 4086 3558 CM091768.1 scaffold3264 98.11 True CONTIG scaffold3264 4104 correct CONTIG scaffold3169 358 unaligned CONTIG scaffold3266 419 unaligned CONTIG scaffold3217 628 unaligned 2902730 2903648 927 1 CM091752.1 scaffold3268 98.49 True CONTIG scaffold3268 941 correct CONTIG scaffold3269 280 unaligned CONTIG scaffold3270 388 unaligned CONTIG scaffold3257 338 unaligned CONTIG scaffold3265 3109 unaligned 11206460 11209105 1 2626 CM091765.1 scaffold3273 98.0 True CONTIG scaffold3273 2626 correct CONTIG scaffold3261 1411 unaligned 17001520 17002526 1005 1 CM091754.1 scaffold3274 96.98 True CONTIG scaffold3274 1240 correct CONTIG scaffold3276 62032 unaligned CONTIG scaffold3277 322 unaligned CONTIG scaffold3278 424 unaligned CONTIG scaffold3272 677 unaligned CONTIG scaffold3239 431 unaligned CONTIG scaffold3271 413 unaligned 16455959 16456839 1376 503 CM091752.1 scaffold3281 97.05 True CONTIG scaffold3281 1376 correct 16634232 16634948 731 1 CM091752.1 scaffold3282 96.72 True CONTIG scaffold3282 731 correct CONTIG scaffold3275 5110 unaligned CONTIG scaffold3284 429 unaligned 16371648 16372163 1 517 CM091752.1 scaffold3286 99.42 True CONTIG scaffold3286 517 correct CONTIG scaffold3285 410 unaligned CONTIG scaffold3288 434 unaligned 9526196 9532151 6010 1 CM091767.1 scaffold3287 98.39 True CONTIG scaffold3287 6010 correct CONTIG scaffold3290 383 unaligned 15962701 15963614 914 1 CM091757.1 scaffold3291 100.0 True CONTIG scaffold3291 914 correct 1956460 1981885 1 25685 CM091754.1 scaffold3280 99.37 True CONTIG scaffold3280 27394 correct 73846 74450 605 1 CM091764.1 scaffold3293 99.67 True CONTIG scaffold3293 611 correct CONTIG scaffold3294 467 unaligned CONTIG scaffold3295 468 unaligned CONTIG scaffold3296 495 unaligned CONTIG scaffold3297 396 unaligned CONTIG scaffold3283 665 unaligned CONTIG scaffold3298 467 unaligned CONTIG scaffold3300 401 unaligned 13660760 13662191 1432 1 CM091755.1 scaffold3301 99.72 True CONTIG scaffold3301 1432 correct CONTIG scaffold3267 497 unaligned 17055729 17056262 1 534 CM091752.1 scaffold3303 100.0 True CONTIG scaffold3303 534 correct 81053 81570 1 511 CM091764.1 scaffold3304 95.58 True CONTIG scaffold3304 511 correct 3751399 3753835 4710 2227 CM091768.1 scaffold3302 97.19 True CONTIG scaffold3302 6841 correct CONTIG scaffold3289 613 unaligned CONTIG scaffold3307 500 unaligned CONTIG scaffold3308 808 unaligned CONTIG scaffold3309 370 unaligned 9177620 9178879 178 1437 CM091763.1 scaffold3310 99.68 True local misassembly 9178880 9180752 1938 3810 CM091763.1 scaffold3310 99.79 True local misassembly 9180753 9181669 4292 5208 CM091763.1 scaffold3310 99.67 True indel: indel (<= 5bp) 9181670 9182868 5210 6408 CM091763.1 scaffold3310 99.92 True local misassembly 9183912 9184903 7755 8740 CM091763.1 scaffold3310 98.89 True CONTIG scaffold3310 8740 correct 4326868 4328654 1 1787 CM091754.1 scaffold3306 99.89 True local misassembly 4328655 4329694 2395 3434 CM091754.1 scaffold3306 100.0 True indel: indel (<= 5bp) 4329696 4330859 3435 4598 CM091754.1 scaffold3306 100.0 True CONTIG scaffold3306 6125 correct 17255943 17256521 1 578 CM091752.1 scaffold3312 97.58 True CONTIG scaffold3312 578 correct 5666371 5693212 1 26905 CM091768.1 scaffold3311 99.71 True CONTIG scaffold3311 26905 correct CONTIG scaffold3292 779 unaligned CONTIG scaffold3315 352 unaligned CONTIG scaffold3316 551 unaligned CONTIG scaffold3317 397 unaligned CONTIG scaffold3313 403 unaligned 3622202 3623173 972 1 CM091768.1 scaffold3319 99.69 True fake: scaffold gap size wrong estimation (local) 3620776 3621278 3182 2680 CM091768.1 scaffold3319 100.0 True CONTIG scaffold3319 3182 correct CONTIG scaffold3314 397 unaligned CONTIG scaffold3320 478 unaligned CONTIG scaffold3299 734 unaligned CONTIG scaffold3323 362 unaligned CONTIG scaffold3324 360 unaligned CONTIG scaffold3325 430 unaligned CONTIG scaffold3305 477 unaligned CONTIG scaffold3326 366 unaligned 11292750 11293411 1 633 CM091765.1 scaffold3328 95.32 True CONTIG scaffold3328 633 correct CONTIG scaffold3329 213 unaligned 8601073 8601775 704 1 CM091767.1 scaffold3327 99.86 True CONTIG scaffold3327 704 correct CONTIG scaffold3330 324 unaligned CONTIG scaffold3318 438 unaligned 38961 39964 1004 1 CM091752.1 scaffold3321 100.0 True local misassembly 37453 39293 3763 1924 CM091752.1 scaffold3321 99.84 True CONTIG scaffold3321 3763 correct 9346934 9350998 1 4065 CM091767.1 scaffold3334 99.98 True CONTIG scaffold3334 4065 correct CONTIG scaffold3322 462 unaligned CONTIG scaffold3332 10082 unaligned CONTIG scaffold3336 1592 unaligned 15883642 15884144 249 751 CM091752.1 scaffold3337 97.42 True CONTIG scaffold3337 1053 correct CONTIG scaffold3335 1670 unaligned CONTIG scaffold3338 497 unaligned CONTIG scaffold3340 359 unaligned CONTIG scaffold3342 401 unaligned CONTIG scaffold3343 252 unaligned CONTIG scaffold3331 3175 unaligned CONTIG scaffold3341 298 unaligned 598278 599490 1551 315 CM091755.1 scaffold3345 95.68 True CONTIG scaffold3345 1551 correct CONTIG scaffold3347 244 unaligned 15735964 15736896 1 952 CM091757.1 scaffold3348 97.58 True CONTIG scaffold3348 952 correct CONTIG scaffold3346 632 unaligned 11453 11974 1 507 CM091753.1 scaffold3350 96.17 True CONTIG scaffold3350 507 correct CONTIG scaffold3351 369 unaligned CONTIG scaffold3352 469 unaligned 7304124 7304830 1 704 CM091752.1 scaffold3353 99.43 True CONTIG scaffold3353 704 correct CONTIG scaffold3354 465 unaligned 9209314 9213059 1 3753 CM091752.1 scaffold3349 99.31 True CONTIG scaffold3349 3753 correct 16239132 16239644 513 1 CM091752.1 scaffold3356 100.0 True CONTIG scaffold3356 513 correct 16284089 16284766 1 678 CM091752.1 scaffold3357 100.0 True CONTIG scaffold3357 678 correct 3362804 3364724 1920 1 CM091752.1 scaffold3358 99.27 True translocation 6390205 6394446 6198 1921 CM091768.1 scaffold3358 97.49 True CONTIG scaffold3358 6198 misassembled CONTIG scaffold3333 699 unaligned 4063347 4064004 658 1 CM091752.1 scaffold3360 99.54 True CONTIG scaffold3360 658 correct CONTIG scaffold3359 882 unaligned CONTIG scaffold3339 338 unaligned CONTIG scaffold3355 368 unaligned CONTIG scaffold3362 370 unaligned CONTIG scaffold3344 454 unaligned CONTIG scaffold3364 445 unaligned 8782058 8792532 533 11138 CM091767.1 scaffold3367 98.75 True CONTIG scaffold3367 11138 correct CONTIG scaffold3361 977 unaligned 4298957 4300830 694 2562 CM091768.1 scaffold3368 98.4 True relocation, scaffold gap is present, inconsistency = -67583 4233474 4234403 2789 3719 CM091768.1 scaffold3368 97.85 True CONTIG scaffold3368 4135 misassembled CONTIG scaffold3370 560 unaligned CONTIG scaffold3363 474 unaligned 6431575 6433227 1665 1 CM091768.1 scaffold3372 97.61 True CONTIG scaffold3372 1665 correct CONTIG scaffold3371 464 unaligned CONTIG scaffold3374 408 unaligned CONTIG scaffold3369 420 unaligned 6429492 6431113 1621 1 CM091768.1 scaffold3376 99.94 True CONTIG scaffold3376 1621 correct CONTIG scaffold3373 421 unaligned 4462977 4464181 1205 1 CM091754.1 scaffold3378 99.92 True CONTIG scaffold3378 1205 correct CONTIG scaffold3375 465 unaligned CONTIG scaffold3377 364 unaligned 397479 398094 1048 433 CM091764.1 scaffold3379 99.68 True CONTIG scaffold3379 1048 correct 1950392 1951466 1075 1 CM091764.1 scaffold3382 99.63 True CONTIG scaffold3382 1075 correct CONTIG scaffold3381 306 unaligned CONTIG scaffold3383 419 unaligned 15363532 15364288 757 1 CM091752.1 scaffold3384 99.87 True CONTIG scaffold3384 757 correct 5405776 5406534 1 759 CM091768.1 scaffold3385 99.6 True CONTIG scaffold3385 759 correct CONTIG scaffold3387 368 unaligned CONTIG scaffold3388 366 unaligned CONTIG scaffold3389 450 unaligned CONTIG scaffold3365 678 unaligned CONTIG scaffold3391 291 unaligned 15723461 15724027 1 551 CM091752.1 scaffold3392 95.06 True CONTIG scaffold3392 553 correct CONTIG scaffold3393 368 unaligned CONTIG scaffold3394 384 unaligned CONTIG scaffold3390 330 unaligned CONTIG scaffold3396 379 unaligned CONTIG scaffold3397 306 unaligned CONTIG scaffold3398 436 unaligned 11056107 11057146 2335 3374 CM091765.1 scaffold3399 99.71 True CONTIG scaffold3399 3374 correct CONTIG scaffold3400 462 unaligned CONTIG scaffold3401 425 unaligned CONTIG scaffold3279 2075 unaligned 1798312 1799412 1101 1 CM091764.1 scaffold3403 99.82 True CONTIG scaffold3403 1101 correct CONTIG scaffold3366 469 unaligned CONTIG scaffold3405 380 unaligned CONTIG scaffold3406 503 unaligned CONTIG scaffold3407 388 unaligned CONTIG scaffold3408 440 unaligned 7219604 7220361 1 759 CM091752.1 scaffold3409 98.02 True CONTIG scaffold3409 759 correct CONTIG scaffold3402 428 unaligned CONTIG scaffold3395 382 unaligned CONTIG scaffold3411 299 unaligned CONTIG scaffold3413 666 unaligned CONTIG scaffold3386 802 unaligned CONTIG scaffold3415 421 unaligned CONTIG scaffold3416 485 unaligned CONTIG scaffold3404 395 unaligned CONTIG scaffold3418 334 unaligned CONTIG scaffold3419 628 unaligned CONTIG scaffold3420 725 unaligned CONTIG scaffold3417 334 unaligned 14066206 14066720 695 181 CM091752.1 scaffold3421 96.7 True CONTIG scaffold3421 860 correct CONTIG scaffold3423 505 unaligned CONTIG scaffold3424 387 unaligned CONTIG scaffold3425 312 unaligned CONTIG scaffold3380 407 unaligned 16271558 16273119 1 1569 CM091752.1 scaffold3427 97.9 True fake: scaffold gap size wrong estimation (local) 16275742 16276908 6808 7974 CM091752.1 scaffold3427 99.91 True CONTIG scaffold3427 7974 correct 15462539 15463982 1 1444 CM091757.1 scaffold3410 100.0 True fake: scaffold gap size wrong estimation (local) 15464222 15466488 2581 4847 CM091757.1 scaffold3410 100.0 True fake: scaffold gap size wrong estimation (local) 15466915 15469843 5479 8406 CM091757.1 scaffold3410 99.9 True CONTIG scaffold3410 8406 correct 6336252 6337036 809 1 CM091768.1 scaffold3429 95.56 True CONTIG scaffold3429 809 correct CONTIG scaffold3430 487 unaligned CONTIG scaffold3428 731 unaligned CONTIG scaffold3432 303 unaligned CONTIG scaffold3414 377 unaligned CONTIG scaffold3434 333 unaligned 3971434 3972277 845 1 CM091767.1 scaffold3435 99.76 True CONTIG scaffold3435 845 correct CONTIG scaffold3412 468 unaligned CONTIG scaffold3437 429 unaligned CONTIG scaffold3438 583 unaligned CONTIG scaffold3439 385 unaligned CONTIG scaffold3440 444 unaligned 8756100 8766242 1 11661 CM091767.1 scaffold3433 98.99 True CONTIG scaffold3433 11661 correct CONTIG scaffold3436 465 unaligned CONTIG scaffold3422 431 unaligned CONTIG scaffold3443 416 unaligned CONTIG scaffold3431 433 unaligned CONTIG scaffold3446 305 unaligned CONTIG scaffold3441 732 unaligned CONTIG scaffold3448 474 unaligned CONTIG scaffold3447 418 unaligned CONTIG scaffold3444 394 unaligned CONTIG scaffold3450 372 unaligned CONTIG scaffold3452 404 unaligned CONTIG scaffold3449 382 unaligned CONTIG scaffold3453 787 unaligned CONTIG scaffold3426 446 unaligned CONTIG scaffold3454 407 unaligned CONTIG scaffold3457 344 unaligned CONTIG scaffold3458 390 unaligned CONTIG scaffold3459 820 unaligned CONTIG scaffold3442 372 unaligned CONTIG scaffold3460 302 unaligned CONTIG scaffold3461 261 unaligned CONTIG scaffold3456 916 unaligned 2910774 2912900 1 2127 CM091752.1 scaffold3462 99.81 True CONTIG scaffold3462 2127 correct 8477714 8478411 1 698 CM091766.1 scaffold3464 99.43 True CONTIG scaffold3464 698 correct CONTIG scaffold3466 493 unaligned 9869310 9875337 6048 1 CM091765.1 scaffold3455 99.5 True indel: indel (> 5bp) 9868689 9869207 6710 6175 CM091765.1 scaffold3455 95.9 True indel: indel (> 5bp) 9861831 9868606 13592 6799 CM091765.1 scaffold3455 99.62 True local misassembly 9861712 9862711 14713 13703 CM091765.1 scaffold3455 98.22 True CONTIG scaffold3455 14713 correct CONTIG scaffold3468 393 unaligned CONTIG scaffold3467 453 unaligned 15587172 15587828 659 1 CM091752.1 scaffold3470 98.33 True CONTIG scaffold3470 659 correct CONTIG scaffold3465 415 unaligned CONTIG scaffold3463 551 unaligned CONTIG scaffold3473 452 unaligned 4696022 4696828 1 806 CM091754.1 scaffold3472 99.26 True local misassembly 4695551 4698985 807 4241 CM091754.1 scaffold3472 100.0 True CONTIG scaffold3472 4241 correct CONTIG scaffold3475 408 unaligned CONTIG scaffold3476 470 unaligned CONTIG scaffold3474 291 unaligned 4625439 4629524 1 4077 CM091768.1 scaffold3477 99.78 True CONTIG scaffold3477 4077 correct 39723 40287 565 1 CM091752.1 scaffold3471 97.35 True local misassembly 38961 40984 3142 1120 CM091752.1 scaffold3471 99.85 True CONTIG scaffold3471 3646 correct CONTIG scaffold3479 3117 unaligned 357417 358827 1439 1 CM091764.1 scaffold3481 97.64 True CONTIG scaffold3481 1439 correct CONTIG scaffold3445 1038 unaligned CONTIG scaffold3480 234 unaligned CONTIG scaffold3484 755 unaligned CONTIG scaffold3469 411 unaligned CONTIG scaffold3486 364 unaligned CONTIG scaffold3451 600 unaligned CONTIG scaffold3478 820 unaligned CONTIG scaffold3482 342 unaligned CONTIG scaffold3485 431 unaligned 4035780 4036496 717 1 CM091752.1 scaffold3491 100.0 True CONTIG scaffold3491 717 correct CONTIG scaffold3489 405 unaligned CONTIG scaffold3487 368 unaligned CONTIG scaffold3494 371 unaligned CONTIG scaffold3495 358 unaligned CONTIG scaffold3488 144362 unaligned CONTIG scaffold3497 404 unaligned CONTIG scaffold3498 333 unaligned CONTIG scaffold3483 474 unaligned 610492 611834 1 1343 CM091755.1 scaffold3496 98.43 True fake: not a misassembly (possible transposable element) 641981 644025 1344 3388 CM091755.1 scaffold3496 99.51 True fake: not a misassembly (possible transposable element) 613519 614140 3389 4010 CM091755.1 scaffold3496 100.0 True CONTIG scaffold3496 4010 correct CONTIG scaffold3501 420 unaligned CONTIG scaffold3502 284 unaligned CONTIG scaffold3503 339 unaligned CONTIG scaffold3504 466 unaligned CONTIG scaffold3505 361 unaligned CONTIG scaffold3493 841 unaligned 13157175 13157774 633 1 CM091752.1 scaffold3507 98.63 True CONTIG scaffold3507 780 correct 2724437 2727426 1 3033 CM091753.1 scaffold3499 99.02 True local misassembly 2731145 2781970 3081 53919 CM091753.1 scaffold3499 99.59 True CONTIG scaffold3499 54018 correct 3353514 3355015 1502 1 CM091768.1 scaffold3508 99.93 True CONTIG scaffold3508 1502 correct CONTIG scaffold3510 922 unaligned 4294861 4295497 1 637 CM091752.1 scaffold3511 99.22 True CONTIG scaffold3511 637 correct CONTIG scaffold3492 402 unaligned 16483540 16484395 1 879 CM091752.1 scaffold3513 96.13 True CONTIG scaffold3513 879 correct 16222768 16225198 3022 593 CM091753.1 scaffold3514 98.64 True relocation, inconsistency = 66531 16154920 16156110 4380 3149 CM091753.1 scaffold3514 95.14 True fake: scaffold gap size wrong estimation (local) 16154022 16155232 6094 4885 CM091753.1 scaffold3514 97.85 True CONTIG scaffold3514 6094 misassembled CONTIG scaffold3490 446 unaligned CONTIG scaffold3500 742 unaligned CONTIG scaffold3509 412 unaligned CONTIG scaffold3516 475 unaligned 8953250 8957589 1 4348 CM091767.1 scaffold3517 99.72 True relocation, inconsistency = 268479 8682184 8684770 6935 4349 CM091767.1 scaffold3517 99.96 True CONTIG scaffold3517 6935 misassembled CONTIG scaffold3520 492 unaligned CONTIG scaffold3515 368 unaligned CONTIG scaffold3512 935 unaligned CONTIG scaffold3522 626 unaligned CONTIG scaffold3524 472 unaligned CONTIG scaffold3525 370 unaligned CONTIG scaffold3526 480 unaligned CONTIG scaffold3506 355 unaligned CONTIG scaffold3527 471 unaligned CONTIG scaffold3529 472 unaligned CONTIG scaffold3530 744 unaligned CONTIG scaffold3528 612 unaligned CONTIG scaffold3523 368 unaligned CONTIG scaffold3519 474 unaligned CONTIG scaffold3534 378 unaligned CONTIG scaffold3518 627 unaligned 16727817 16730017 6151 8352 CM091752.1 scaffold3532 98.5 True CONTIG scaffold3532 9138 correct CONTIG scaffold3537 461 unaligned CONTIG scaffold3538 419 unaligned CONTIG scaffold3539 394 unaligned CONTIG scaffold3536 412 unaligned CONTIG scaffold3540 483 unaligned CONTIG scaffold3542 356 unaligned CONTIG scaffold3535 434 unaligned 9098595 9099131 1999 1463 CM091760.1 scaffold3541 96.28 True CONTIG scaffold3541 3182 correct_unaligned CONTIG scaffold3544 597 unaligned CONTIG scaffold3546 368 unaligned CONTIG scaffold3547 393 unaligned CONTIG scaffold3531 390 unaligned CONTIG scaffold3545 633 unaligned CONTIG scaffold3543 423 unaligned CONTIG scaffold3551 514 unaligned CONTIG scaffold3552 344 unaligned CONTIG scaffold3549 356 unaligned CONTIG scaffold3533 416 unaligned 8997670 8998515 1 846 CM091767.1 scaffold3554 99.88 True CONTIG scaffold3554 1475 correct CONTIG scaffold3550 484 unaligned CONTIG scaffold3556 430 unaligned CONTIG scaffold3557 521 unaligned 7958682 7959232 551 1 CM091767.1 scaffold3559 100.0 True CONTIG scaffold3559 551 correct 4453261 4454192 1 952 CM091754.1 scaffold3558 97.27 True CONTIG scaffold3558 952 correct CONTIG scaffold3553 487 unaligned CONTIG scaffold3562 457 unaligned CONTIG scaffold3563 488 unaligned CONTIG scaffold3521 373 unaligned 552044 555568 237 3762 CM091764.1 scaffold3565 99.8 True CONTIG scaffold3565 3762 correct CONTIG scaffold3564 302 unaligned CONTIG scaffold3567 419 unaligned 9194445 9198479 1 4032 CM091763.1 scaffold3568 99.43 True CONTIG scaffold3568 6479 correct CONTIG scaffold3569 390 unaligned 16425364 16426415 1 1052 CM091752.1 scaffold3570 99.43 True CONTIG scaffold3570 1052 correct CONTIG scaffold3548 370 unaligned CONTIG scaffold3555 821 unaligned CONTIG scaffold3573 406 unaligned 11143210 11145802 4317 1725 CM091766.1 scaffold3572 99.92 True CONTIG scaffold3572 4522 correct 895100 896004 905 1 CM091764.1 scaffold3575 99.78 True CONTIG scaffold3575 905 correct CONTIG scaffold3574 441 unaligned 16308447 16309208 1 763 CM091752.1 scaffold3576 99.87 True CONTIG scaffold3576 763 correct CONTIG scaffold3577 466 unaligned CONTIG scaffold3579 387 unaligned CONTIG scaffold3580 444 unaligned 6659738 6665401 40 5715 CM091755.1 scaffold3578 99.54 True local misassembly 6664354 6665825 5748 7220 CM091755.1 scaffold3578 99.66 True indel: indel (> 5bp) 6665939 6669882 7304 11247 CM091755.1 scaffold3578 99.14 True CONTIG scaffold3578 11255 correct 9350956 9353601 2666 1 CM091767.1 scaffold3581 99.21 True CONTIG scaffold3581 2666 correct CONTIG scaffold3582 1863 unaligned 3553926 3554570 386 1030 CM091753.1 scaffold3566 98.3 True CONTIG scaffold3566 1030 correct CONTIG scaffold3560 760 unaligned CONTIG scaffold3586 734 unaligned CONTIG scaffold3583 545 unaligned 15490636 15491638 1 1002 CM091752.1 scaffold3585 99.7 True indel: indel (> 5bp) 15491682 15492281 1096 1695 CM091752.1 scaffold3585 99.33 True CONTIG scaffold3585 2143 correct 6727494 6728782 1312 1 CM091768.1 scaffold3587 97.03 True CONTIG scaffold3587 1312 correct CONTIG scaffold3590 348 unaligned 1807424 1809183 1 1760 CM091764.1 scaffold3588 100.0 True local misassembly 1808601 1810536 1761 3696 CM091764.1 scaffold3588 100.0 True CONTIG scaffold3588 3696 correct CONTIG scaffold3591 340 unaligned CONTIG scaffold3593 375 unaligned 15987772 15988476 1 704 CM091752.1 scaffold3594 98.01 True CONTIG scaffold3594 704 correct CONTIG scaffold3561 428 unaligned CONTIG scaffold3589 375 unaligned CONTIG scaffold3597 824 unaligned 16092403 16093177 784 1 CM091752.1 scaffold3596 98.47 True CONTIG scaffold3596 784 correct 2916276 2916909 4 636 CM091768.1 scaffold3598 99.53 True CONTIG scaffold3598 636 correct 16507218 16507936 719 1 CM091752.1 scaffold3599 100.0 True CONTIG scaffold3599 719 correct CONTIG scaffold3601 270 unaligned CONTIG scaffold3571 976 unaligned CONTIG scaffold3603 456 unaligned CONTIG scaffold3604 421 unaligned CONTIG scaffold3602 710 unaligned CONTIG scaffold3606 389 unaligned CONTIG scaffold3607 258 unaligned CONTIG scaffold3608 458 unaligned CONTIG scaffold3592 453 unaligned CONTIG scaffold3609 454 unaligned CONTIG scaffold3611 369 unaligned CONTIG scaffold3610 390 unaligned CONTIG scaffold3613 374 unaligned CONTIG scaffold3614 528 unaligned 7468370 7469040 6 677 CM091764.1 scaffold3615 98.37 True CONTIG scaffold3615 677 correct CONTIG scaffold3612 312 unaligned CONTIG scaffold3617 501 unaligned 16581985 16582779 808 1 CM091752.1 scaffold3618 96.04 True CONTIG scaffold3618 808 correct CONTIG scaffold3619 488 unaligned CONTIG scaffold3605 572 unaligned CONTIG scaffold3621 326 unaligned CONTIG scaffold3622 443 unaligned 1902854 1903499 646 1 CM091764.1 scaffold3623 99.69 True CONTIG scaffold3623 646 correct 17105555 17106258 449 1152 CM091752.1 scaffold3620 98.86 True CONTIG scaffold3620 1152 correct CONTIG scaffold3625 482 unaligned CONTIG scaffold3626 421 unaligned CONTIG scaffold3624 449 unaligned 7807888 7808443 301 864 CM091767.1 scaffold3628 99.82 True CONTIG scaffold3628 864 correct CONTIG scaffold3629 486 unaligned CONTIG scaffold3630 532 unaligned CONTIG scaffold3627 369 unaligned 7935451 7936153 703 1 CM091767.1 scaffold3632 99.43 True CONTIG scaffold3632 703 correct CONTIG scaffold3633 437 unaligned CONTIG scaffold3634 346 unaligned CONTIG scaffold3635 372 unaligned CONTIG scaffold3631 440 unaligned CONTIG scaffold3636 422 unaligned 1952224 1952710 1 501 CM091764.1 scaffold3638 95.61 True CONTIG scaffold3638 508 correct CONTIG scaffold3639 496 unaligned CONTIG scaffold3595 1167 unaligned CONTIG scaffold3641 379 unaligned 6427753 6428319 843 277 CM091768.1 scaffold3642 100.0 True CONTIG scaffold3642 843 correct CONTIG scaffold3637 382 unaligned CONTIG scaffold3644 299 unaligned 16459927 16460578 1 652 CM091752.1 scaffold3645 99.85 True CONTIG scaffold3645 652 correct CONTIG scaffold3643 379 unaligned 16023863 16024363 1 501 CM091752.1 scaffold3647 98.4 True CONTIG scaffold3647 501 correct CONTIG scaffold3648 326 unaligned CONTIG scaffold3649 454 unaligned CONTIG scaffold3650 365 unaligned CONTIG scaffold3640 406 unaligned CONTIG scaffold3652 526 unaligned CONTIG scaffold3653 484 unaligned CONTIG scaffold3654 240 unaligned CONTIG scaffold3655 457 unaligned CONTIG scaffold3656 410 unaligned CONTIG scaffold3651 459 unaligned CONTIG scaffold3658 464 unaligned 9239635 9240479 1 845 CM091763.1 scaffold3659 99.17 True fake: scaffold gap size wrong estimation (local) 9246164 9247591 6961 8388 CM091763.1 scaffold3659 99.65 True CONTIG scaffold3659 8388 correct 16192885 16193456 573 1 CM091757.1 scaffold3660 99.83 True CONTIG scaffold3660 573 correct CONTIG scaffold3661 438 unaligned 8927615 8928430 1 817 CM091767.1 scaffold3662 99.88 True CONTIG scaffold3662 817 correct CONTIG scaffold3663 383 unaligned CONTIG scaffold3664 342 unaligned CONTIG scaffold3657 402 unaligned CONTIG scaffold3665 363 unaligned 16326095 16326754 1 660 CM091752.1 scaffold3667 99.85 True CONTIG scaffold3667 660 correct CONTIG scaffold3666 400 unaligned 9179598 9180857 1260 1 CM091767.1 scaffold3668 100.0 True CONTIG scaffold3668 1260 correct CONTIG scaffold3670 403 unaligned CONTIG scaffold3671 395 unaligned CONTIG scaffold3672 361 unaligned CONTIG scaffold3646 4050 unaligned CONTIG scaffold3673 535 unaligned CONTIG scaffold3675 391 unaligned 50880 52067 1186 1 CM091768.1 scaffold3674 99.16 True CONTIG scaffold3674 1186 correct CONTIG scaffold3677 509 unaligned CONTIG scaffold3678 433 unaligned CONTIG scaffold3669 659 unaligned CONTIG scaffold3680 452 unaligned CONTIG scaffold3681 346 unaligned CONTIG scaffold3682 298 unaligned CONTIG scaffold3679 485 unaligned CONTIG scaffold3684 429 unaligned 174686 175349 1 664 CM091764.1 scaffold3683 100.0 True CONTIG scaffold3683 1002 correct CONTIG scaffold3676 829 unaligned CONTIG scaffold3687 492 unaligned CONTIG scaffold3688 388 unaligned CONTIG scaffold3689 309 unaligned 15255819 15256366 997 450 CM091752.1 scaffold3690 100.0 True CONTIG scaffold3690 997 correct CONTIG scaffold3691 515 unaligned CONTIG scaffold3692 396 unaligned CONTIG scaffold3693 466 unaligned CONTIG scaffold3686 398 unaligned 7739711 7740476 823 1 CM091767.1 scaffold3695 95.24 True CONTIG scaffold3695 823 correct CONTIG scaffold3694 394 unaligned CONTIG scaffold3697 360 unaligned CONTIG scaffold3696 441 unaligned CONTIG scaffold3699 413 unaligned CONTIG scaffold3698 386 unaligned CONTIG scaffold3700 366 unaligned 14956407 14956957 732 182 CM091752.1 scaffold3702 99.46 True CONTIG scaffold3702 1246 correct_unaligned CONTIG scaffold3703 318 unaligned 4337680 4338230 551 1 CM091754.1 scaffold3704 100.0 True CONTIG scaffold3704 551 correct CONTIG scaffold3685 4600 unaligned 7202194 7204995 1 2806 CM091758.1 scaffold3706 98.29 True CONTIG scaffold3706 2806 correct CONTIG scaffold3707 332 unaligned CONTIG scaffold3708 461 unaligned CONTIG scaffold3709 668 unaligned 16239984 16240545 562 1 CM091752.1 scaffold3710 100.0 True CONTIG scaffold3710 562 correct 9902055 9902746 692 1 CM091756.1 scaffold3711 99.71 True CONTIG scaffold3711 692 correct CONTIG scaffold3712 391 unaligned 10306755 10650683 348644 1 CM091759.1 scaffold1862 98.93 True indel: indel (> 5bp) 10254858 10306669 402536 348693 CM091759.1 scaffold1862 99.52 True local misassembly 10033827 10254894 629001 403227 CM091759.1 scaffold1862 99.3 True indel: indel (> 5bp) 9887086 10033704 779656 629153 CM091759.1 scaffold1862 99.0 True indel: indel (> 5bp) 9760531 9886922 909896 779813 CM091759.1 scaffold1862 98.67 True fake: scaffold gap size wrong estimation (local) 9733162 9760332 938920 910641 CM091759.1 scaffold1862 99.2 True local misassembly 9710068 9732971 964083 939690 CM091759.1 scaffold1862 99.17 True fake: scaffold gap size wrong estimation (local) 9685435 9709917 991601 965282 CM091759.1 scaffold1862 96.01 True fake: scaffold gap size wrong estimation (local) 9682574 9684777 994729 992526 CM091759.1 scaffold1862 99.59 True indel: indel (<= 5bp) 9681784 9682573 995520 994731 CM091759.1 scaffold1862 99.62 True local misassembly 9680332 9681742 997370 995960 CM091759.1 scaffold1862 99.36 True indel: indel (<= 5bp) 9679677 9680271 998023 997429 CM091759.1 scaffold1862 100.0 True indel: indel (<= 5bp) 9645878 9679573 1033543 998125 CM091759.1 scaffold1862 99.38 True fake: scaffold gap size wrong estimation (local) 9634706 9645724 1045480 1034462 CM091759.1 scaffold1862 99.75 True fake: scaffold gap size wrong estimation (local) 9559553 9634622 1122724 1045887 CM091759.1 scaffold1862 99.68 True local misassembly 9445237 9559512 1242089 1123029 CM091759.1 scaffold1862 98.78 True fake: scaffold gap size wrong estimation (local) 9400928 9445116 1289045 1242399 CM091759.1 scaffold1862 99.56 True fake: scaffold gap size wrong estimation (local) 9341307 9400833 1350889 1289557 CM091759.1 scaffold1862 99.18 True fake: scaffold gap size wrong estimation (local) 9256883 9341180 1435987 1351691 CM091759.1 scaffold1862 99.69 True indel: indel (> 5bp) 9239813 9256797 1453049 1436065 CM091759.1 scaffold1862 99.41 True fake: scaffold gap size wrong estimation (local) 9207888 9239430 1485683 1454126 CM091759.1 scaffold1862 99.85 True CONTIG scaffold1862 1485683 correct CONTIG scaffold3705 672 unaligned CONTIG scaffold3715 380 unaligned CONTIG scaffold3716 380 unaligned CONTIG scaffold3717 377 unaligned CONTIG scaffold3713 434 unaligned 5406724 5407692 1 969 CM091764.1 scaffold3719 99.48 True CONTIG scaffold3719 3680 correct CONTIG scaffold3720 377 unaligned CONTIG scaffold3721 1288 unaligned CONTIG scaffold3701 478 unaligned CONTIG scaffold3723 322 unaligned 1950404 1951466 1064 1 CM091764.1 scaffold3724 98.31 True CONTIG scaffold3724 1064 correct CONTIG scaffold3722 649 unaligned CONTIG scaffold3725 444 unaligned CONTIG scaffold3726 452 unaligned CONTIG scaffold3727 378 unaligned CONTIG scaffold3728 400 unaligned 8396432 8396963 20 536 CM091767.1 scaffold3729 95.5 True relocation, scaffold gap is present, inconsistency = 914559 9312628 9314050 1642 3064 CM091767.1 scaffold3729 99.16 True CONTIG scaffold3729 3454 misassembled CONTIG scaffold3731 488 unaligned CONTIG scaffold3732 467 unaligned CONTIG scaffold3730 664 unaligned CONTIG scaffold3733 374 unaligned CONTIG scaffold3734 241 unaligned CONTIG scaffold3736 459 unaligned CONTIG scaffold3735 588 unaligned CONTIG scaffold3738 397 unaligned 1878131 1878660 133 667 CM091764.1 scaffold3739 98.88 True CONTIG scaffold3739 667 correct CONTIG scaffold3740 340 unaligned 15021217 15021746 513 1 CM091756.1 scaffold3741 95.47 True CONTIG scaffold3741 513 correct 65882 66449 1 568 CM091763.1 scaffold3742 99.3 True CONTIG scaffold3742 568 correct CONTIG scaffold3743 347 unaligned CONTIG scaffold3737 477 unaligned CONTIG scaffold3745 464 unaligned 15628423 15629294 872 1 CM091752.1 scaffold3744 98.62 True CONTIG scaffold3744 882 correct 2871872 2875300 3439 1 CM091752.1 scaffold3746 99.62 True relocation, inconsistency = 177224 3053425 3054842 4340 5761 CM091752.1 scaffold3746 95.64 True CONTIG scaffold3746 5761 misassembled CONTIG scaffold3747 358 unaligned CONTIG scaffold3748 588 unaligned 4162977 4163688 1 715 CM091768.1 scaffold3750 98.74 True CONTIG scaffold3750 715 correct CONTIG scaffold3751 473 unaligned 9195972 9197889 3923 2006 CM091763.1 scaffold3752 99.27 True CONTIG scaffold3752 3923 correct CONTIG scaffold3753 306 unaligned CONTIG scaffold3754 469 unaligned CONTIG scaffold3755 408 unaligned CONTIG scaffold3756 404 unaligned CONTIG scaffold3749 1022 unaligned CONTIG scaffold3757 465 unaligned CONTIG scaffold3759 496 unaligned CONTIG scaffold3760 361 unaligned CONTIG scaffold3761 450 unaligned CONTIG scaffold3762 278 unaligned CONTIG scaffold3616 538 unaligned CONTIG scaffold3764 399 unaligned CONTIG scaffold3765 430 unaligned CONTIG scaffold3766 288 unaligned CONTIG scaffold3758 469 unaligned CONTIG scaffold3768 329 unaligned CONTIG scaffold3763 440 unaligned 16434489 16435659 2206 3396 CM091752.1 scaffold3769 97.73 True CONTIG scaffold3769 3396 correct_unaligned CONTIG scaffold3771 444 unaligned CONTIG scaffold3772 444 unaligned 4574243 4575886 1 1644 CM091754.1 scaffold3773 98.06 True CONTIG scaffold3773 1644 correct CONTIG scaffold3774 400 unaligned CONTIG scaffold3775 271 unaligned CONTIG scaffold3776 291 unaligned 2416216 2417835 3138 1519 CM091760.1 scaffold3777 99.63 True CONTIG scaffold3777 3138 correct CONTIG scaffold3770 491 unaligned CONTIG scaffold3779 397 unaligned CONTIG scaffold3780 490 unaligned CONTIG scaffold3781 498 unaligned 14298305 14298807 503 1 CM091752.1 scaffold3782 100.0 True CONTIG scaffold3782 503 correct CONTIG scaffold3783 326 unaligned CONTIG scaffold3784 594 unaligned CONTIG scaffold3785 414 unaligned CONTIG scaffold3786 918 unaligned CONTIG scaffold3787 490 unaligned CONTIG scaffold3767 551 unaligned CONTIG scaffold3789 889 unaligned CONTIG scaffold3790 400 unaligned CONTIG scaffold3778 801 unaligned CONTIG scaffold3792 342 unaligned CONTIG scaffold3791 410 unaligned CONTIG scaffold3793 444 unaligned CONTIG scaffold3795 624 unaligned 1369682 1370817 1524 386 CM091764.1 scaffold3794 96.43 True local misassembly 1367084 1368411 4405 3078 CM091764.1 scaffold3794 100.0 True CONTIG scaffold3794 4405 correct CONTIG scaffold3788 858 unaligned 17079166 17079694 1 529 CM091752.1 scaffold3798 99.05 True CONTIG scaffold3798 529 correct CONTIG scaffold3799 402 unaligned 16227662 16228162 511 1 CM091753.1 scaffold3800 96.28 True CONTIG scaffold3800 511 correct CONTIG scaffold3801 442 unaligned CONTIG scaffold3802 331 unaligned 14953651 14954384 1 740 CM091752.1 scaffold3803 98.43 True CONTIG scaffold3803 740 correct CONTIG scaffold3804 471 unaligned CONTIG scaffold3805 357 unaligned CONTIG scaffold3806 437 unaligned CONTIG scaffold3796 458 unaligned CONTIG scaffold3808 347 unaligned 16114027 16114913 1 891 CM091752.1 scaffold3809 98.43 True CONTIG scaffold3809 891 correct CONTIG scaffold3807 331 unaligned CONTIG scaffold3811 385 unaligned CONTIG scaffold3812 384 unaligned 15762505 15763470 966 1 CM091757.1 scaffold3813 99.9 True CONTIG scaffold3813 966 correct CONTIG scaffold3814 344 unaligned 3721139 3723690 1 2553 CM091760.1 scaffold3815 99.65 True CONTIG scaffold3815 2553 correct CONTIG scaffold3816 270 unaligned CONTIG scaffold3817 393 unaligned CONTIG scaffold3818 424 unaligned CONTIG scaffold3819 447 unaligned CONTIG scaffold3820 383 unaligned CONTIG scaffold3821 414 unaligned CONTIG scaffold3810 634 unaligned CONTIG scaffold3823 429 unaligned CONTIG scaffold3824 483 unaligned 16462734 16463251 518 1 CM091752.1 scaffold3825 98.26 True CONTIG scaffold3825 518 correct 8807855 8810934 3103 1 CM091767.1 scaffold3826 98.91 True local misassembly 8808499 8809509 4118 3108 CM091767.1 scaffold3826 100.0 True CONTIG scaffold3826 4118 correct CONTIG scaffold3797 393 unaligned CONTIG scaffold3828 395 unaligned CONTIG scaffold3829 530 unaligned CONTIG scaffold3830 475 unaligned 14495767 14496397 1 650 CM091756.1 scaffold3831 96.77 True CONTIG scaffold3831 780 correct CONTIG scaffold3832 315 unaligned CONTIG scaffold3827 867 unaligned 3934180 3935070 1 910 CM091768.1 scaffold3835 97.91 True CONTIG scaffold3835 910 correct CONTIG scaffold3836 446 unaligned CONTIG scaffold3837 440 unaligned CONTIG scaffold3838 458 unaligned CONTIG scaffold3839 408 unaligned CONTIG scaffold3834 374 unaligned CONTIG scaffold3841 551 unaligned CONTIG scaffold3842 1044 unaligned CONTIG scaffold3822 476 unaligned CONTIG scaffold3844 341 unaligned 317517 318081 1 571 CM091764.1 scaffold3845 97.73 True CONTIG scaffold3845 689 correct CONTIG scaffold3840 448 unaligned CONTIG scaffold3847 562 unaligned CONTIG scaffold3843 329 unaligned CONTIG scaffold3849 517 unaligned 2128755 2129306 552 1 CM091764.1 scaffold3850 100.0 True indel: indel (> 5bp) 2128198 2128692 1153 645 CM091764.1 scaffold3850 95.28 True indel: indel (> 5bp) 2126538 2128089 2869 1292 CM091764.1 scaffold3850 98.1 True CONTIG scaffold3850 2869 correct 5206999 5215984 9349 1 CM091768.1 scaffold3851 99.87 True CONTIG scaffold3851 9349 correct CONTIG scaffold3848 426 unaligned CONTIG scaffold3853 468 unaligned CONTIG scaffold3854 666 unaligned 15283496 15285605 2104 1 CM091758.1 scaffold3855 98.44 True CONTIG scaffold3855 2104 correct 1646107 1648899 717 3530 CM091764.1 scaffold3852 96.98 True CONTIG scaffold3852 4440 correct 16290117 16290916 1 800 CM091757.1 scaffold3857 100.0 True CONTIG scaffold3857 800 correct 2172294 2270405 1 103044 CM091756.1 scaffold3718 98.38 True CONTIG scaffold3718 103044 correct CONTIG scaffold3859 328 unaligned CONTIG scaffold3860 458 unaligned CONTIG scaffold3861 333 unaligned CONTIG scaffold3856 542 unaligned 16108644 16109348 1 705 CM091758.1 scaffold3863 100.0 True CONTIG scaffold3863 705 correct CONTIG scaffold3864 451 unaligned 9265992 9266513 523 1 CM091767.1 scaffold3865 97.71 True CONTIG scaffold3865 523 correct 15515400 15515900 1 501 CM091757.1 scaffold3866 98.4 True CONTIG scaffold3866 1061 correct_unaligned CONTIG scaffold3867 406 unaligned CONTIG scaffold3868 386 unaligned CONTIG scaffold3869 362 unaligned 3725197 3726242 1045 1 CM091760.1 scaffold3870 99.43 True CONTIG scaffold3870 1045 correct CONTIG scaffold3871 400 unaligned CONTIG scaffold3872 417 unaligned CONTIG scaffold3873 414 unaligned CONTIG scaffold3874 499 unaligned CONTIG scaffold3875 441 unaligned CONTIG scaffold3876 349 unaligned 15357110 15357769 1 660 CM091752.1 scaffold3877 99.85 True CONTIG scaffold3877 660 correct 4222253 4223377 1 1117 CM091768.1 scaffold3878 97.33 True indel: indel (> 5bp) 4223650 4225066 1429 2845 CM091768.1 scaffold3878 99.29 True CONTIG scaffold3878 2845 correct CONTIG scaffold3879 354 unaligned CONTIG scaffold3880 305 unaligned 11306987 11307554 109 675 CM091766.1 scaffold3858 99.65 True CONTIG scaffold3858 867 correct CONTIG scaffold3882 381 unaligned CONTIG scaffold3881 691 unaligned 6382952 6384776 1825 1 CM091768.1 scaffold3884 100.0 True CONTIG scaffold3884 1825 correct 140533 141589 1057 1 CM091764.1 scaffold3885 100.0 True CONTIG scaffold3885 1057 correct CONTIG scaffold3862 333 unaligned 16155325 16156168 1 844 CM091753.1 scaffold3887 98.58 True local misassembly 16155601 16158253 1355 4001 CM091753.1 scaffold3887 98.19 True CONTIG scaffold3887 4001 correct CONTIG scaffold3883 388 unaligned CONTIG scaffold3886 730 unaligned CONTIG scaffold3889 313 unaligned CONTIG scaffold3891 381 unaligned 4223073 4223858 768 1 CM091752.1 scaffold3890 95.65 True CONTIG scaffold3890 768 correct CONTIG scaffold3893 439 unaligned 2639136 2640166 1038 1 CM091761.1 scaffold3892 99.9 True CONTIG scaffold3892 1038 correct CONTIG scaffold3894 520 unaligned CONTIG scaffold3896 348 unaligned CONTIG scaffold3897 431 unaligned 4050604 4051232 629 1 CM091752.1 scaffold3898 99.68 True CONTIG scaffold3898 629 correct CONTIG scaffold3899 400 unaligned CONTIG scaffold3888 404 unaligned CONTIG scaffold3901 285 unaligned CONTIG scaffold3902 363 unaligned CONTIG scaffold3900 271 unaligned CONTIG scaffold3904 318 unaligned CONTIG scaffold3905 417 unaligned CONTIG scaffold3906 651 unaligned CONTIG scaffold3903 273 unaligned CONTIG scaffold3908 389 unaligned CONTIG scaffold3907 397 unaligned 4940859 4941444 615 1 CM091768.1 scaffold3909 97.28 True CONTIG scaffold3909 615 correct 16225586 16226183 598 1 CM091753.1 scaffold3911 98.49 True CONTIG scaffold3911 598 correct 1929657 1930572 1 948 CM091764.1 scaffold3910 96.1 True CONTIG scaffold3910 948 correct CONTIG scaffold3912 1048 unaligned CONTIG scaffold3913 432 unaligned CONTIG scaffold3914 283 unaligned CONTIG scaffold3916 440 unaligned CONTIG scaffold3917 449 unaligned 5065380 5065932 1 553 CM091768.1 scaffold3918 99.64 True CONTIG scaffold3918 566 correct CONTIG scaffold3895 239 unaligned CONTIG scaffold3920 429 unaligned CONTIG scaffold3919 524 unaligned CONTIG scaffold3921 409 unaligned 15387963 15388475 1 513 CM091752.1 scaffold3922 99.81 True CONTIG scaffold3922 513 correct 1947464 1948421 1 958 CM091764.1 scaffold3923 99.79 True CONTIG scaffold3923 958 correct CONTIG scaffold3915 466 unaligned CONTIG scaffold3924 459 unaligned 86692 89750 3058 1 CM091763.1 scaffold3927 99.9 True local misassembly 87244 88259 4073 3059 CM091763.1 scaffold3927 99.71 True CONTIG scaffold3927 4073 correct 15604786 15605351 1 565 CM091752.1 scaffold3928 99.12 True CONTIG scaffold3928 565 correct 15244541 15245655 1115 1 CM091752.1 scaffold3929 99.55 True CONTIG scaffold3929 1121 correct CONTIG scaffold3930 476 unaligned CONTIG scaffold3926 510 unaligned CONTIG scaffold3931 482 unaligned CONTIG scaffold3932 358 unaligned CONTIG scaffold3934 296 unaligned CONTIG scaffold3933 374 unaligned CONTIG scaffold3935 445 unaligned 13208622 13209296 675 1 CM091752.1 scaffold3936 98.67 True CONTIG scaffold3936 675 correct 42417 43482 1 1066 CM091753.1 scaffold3938 99.34 True CONTIG scaffold3938 1075 correct 16318068 16318908 842 1 CM091752.1 scaffold3937 97.06 True CONTIG scaffold3937 842 correct CONTIG scaffold3940 415 unaligned CONTIG scaffold3941 399 unaligned CONTIG scaffold3925 459 unaligned 4478176 4479065 10 899 CM091754.1 scaffold3942 100.0 True CONTIG scaffold3942 899 correct CONTIG scaffold3939 291 unaligned CONTIG scaffold3945 511 unaligned CONTIG scaffold3944 372 unaligned CONTIG scaffold3947 428 unaligned 4921273 4921823 1 551 CM091768.1 scaffold3948 100.0 True CONTIG scaffold3948 551 correct CONTIG scaffold3949 220 unaligned CONTIG scaffold3950 461 unaligned CONTIG scaffold3946 393 unaligned CONTIG scaffold3952 405 unaligned CONTIG scaffold3951 429 unaligned 16902213 16902922 1 728 CM091752.1 scaffold3954 96.84 True CONTIG scaffold3954 792 correct 1266154 1274841 8929 250 CM091753.1 scaffold3955 99.32 True CONTIG scaffold3955 8929 correct CONTIG scaffold3953 411 unaligned 1928524 1929048 1 525 CM091764.1 scaffold3957 99.81 True CONTIG scaffold3957 525 correct CONTIG scaffold3958 421 unaligned 16684325 16684829 505 1 CM091752.1 scaffold3959 98.81 True CONTIG scaffold3959 505 correct CONTIG scaffold3960 442 unaligned 16489730 16490498 1 769 CM091752.1 scaffold3961 99.87 True CONTIG scaffold3961 769 correct CONTIG scaffold3956 661 unaligned 2847038 2847693 656 1 CM091751.1 scaffold3963 100.0 True CONTIG scaffold3963 656 correct 16164802 16165558 1 758 CM091753.1 scaffold3964 99.34 True CONTIG scaffold3964 758 correct CONTIG scaffold3965 473 unaligned CONTIG scaffold3966 366 unaligned CONTIG scaffold3967 493 unaligned CONTIG scaffold3968 489 unaligned 8667196 8669282 1 2094 CM091767.1 scaffold3969 99.66 True fake: scaffold gap size wrong estimation (local) 8670409 8671392 3674 4683 CM091767.1 scaffold3969 99.7 True CONTIG scaffold3969 4683 correct 5963824 6025831 63126 1 CM091761.1 scaffold3584 98.59 True fake: not a misassembly (possible transposable element) 7443013 7443840 63141 63969 CM091756.1 scaffold3584 99.76 True fake: not a misassembly (possible transposable element) 5938265 5963499 89257 63989 CM091761.1 scaffold3584 99.39 True indel: indel (<= 5bp) 5926426 5938226 101118 89300 CM091761.1 scaffold3584 99.35 True local misassembly 5827572 5925672 204265 101897 CM091761.1 scaffold3584 97.61 True local misassembly 5773335 5821932 253488 204432 CM091761.1 scaffold3584 99.68 True CONTIG scaffold3584 254203 correct 14768167 14769755 1 1662 CM091754.1 scaffold3970 98.31 True fake: scaffold gap size wrong estimation (local) 14769990 14772676 2793 5556 CM091754.1 scaffold3970 99.92 True fake: scaffold gap size wrong estimation (local) 14775080 14776636 9726 11307 CM091754.1 scaffold3970 99.47 True fake: scaffold gap size wrong estimation (local) 14777004 14778810 13039 14894 CM091754.1 scaffold3970 99.28 True fake: scaffold gap size wrong estimation (local) 14780246 14781824 16194 17792 CM091754.1 scaffold3970 98.58 True fake: scaffold gap size wrong estimation (local) 14782126 14784232 19143 21418 CM091754.1 scaffold3970 99.43 True fake: scaffold gap size wrong estimation (local) 14784425 14788259 21852 25718 CM091754.1 scaffold3970 99.24 True fake: scaffold gap size wrong estimation (local) 14788342 14789273 25838 26769 CM091754.1 scaffold3970 99.68 True fake: scaffold gap size wrong estimation (local) 14789907 14792976 27975 31096 CM091754.1 scaffold3970 99.93 True fake: scaffold gap size wrong estimation (local) 14793139 14797524 31260 36391 CM091754.1 scaffold3970 97.52 True fake: scaffold gap size wrong estimation (local) 14798666 14799263 37594 38192 CM091754.1 scaffold3970 99.83 True fake: scaffold gap size wrong estimation (local) 14799417 14800903 38362 39869 CM091754.1 scaffold3970 99.26 True fake: scaffold gap size wrong estimation (local) 14801195 14802621 40617 42044 CM091754.1 scaffold3970 99.79 True fake: scaffold gap size wrong estimation (local) 14803517 14806706 43302 46528 CM091754.1 scaffold3970 99.4 True fake: scaffold gap size wrong estimation (local) 14807014 14807854 47444 48325 CM091754.1 scaffold3970 99.41 True fake: scaffold gap size wrong estimation (local) 14808036 14808673 48502 49147 CM091754.1 scaffold3970 98.79 True fake: scaffold gap size wrong estimation (local) 14809756 14813602 51279 55937 CM091754.1 scaffold3970 99.38 True fake: scaffold gap size wrong estimation (local) 14813690 14818379 56022 60787 CM091754.1 scaffold3970 98.92 True CONTIG scaffold3970 60787 correct CONTIG scaffold3972 395 unaligned CONTIG scaffold3973 329 unaligned CONTIG scaffold3974 370 unaligned 3547444 3548427 1 980 CM091753.1 scaffold3971 99.19 True CONTIG scaffold3971 1561 correct CONTIG scaffold3976 418 unaligned CONTIG scaffold3977 306 unaligned CONTIG scaffold3978 353 unaligned CONTIG scaffold3979 475 unaligned CONTIG scaffold3980 485 unaligned CONTIG scaffold3981 457 unaligned CONTIG scaffold3975 487 unaligned 966345 970313 1 3984 CM091764.1 scaffold3983 100.0 True CONTIG scaffold3983 3984 correct CONTIG scaffold3984 696 unaligned CONTIG scaffold3985 416 unaligned 16289094 16289946 1 869 CM091752.1 scaffold3986 96.78 True CONTIG scaffold3986 1012 correct CONTIG scaffold3982 454 unaligned CONTIG scaffold3988 462 unaligned 4312602 4313104 503 1 CM091768.1 scaffold3989 100.0 True CONTIG scaffold3989 503 correct CONTIG scaffold3990 484 unaligned 16588189 16588696 1 507 CM091752.1 scaffold3991 99.61 True CONTIG scaffold3991 507 correct CONTIG scaffold3846 389 unaligned CONTIG scaffold3714 572 unaligned CONTIG scaffold3993 651 unaligned 15606810 15607350 542 1 CM091752.1 scaffold3995 99.45 True CONTIG scaffold3995 542 correct 3637156 3637691 536 1 CM091768.1 scaffold3996 99.81 True CONTIG scaffold3996 536 correct CONTIG scaffold3997 422 unaligned CONTIG scaffold3994 1285 unaligned 4317209 4317740 1 532 CM091768.1 scaffold3999 99.62 True CONTIG scaffold3999 532 correct CONTIG scaffold4000 368 unaligned CONTIG scaffold3992 332 unaligned CONTIG scaffold3998 627 unaligned CONTIG scaffold4003 462 unaligned 4401663 4402416 1 755 CM091752.1 scaffold4004 99.34 True CONTIG scaffold4004 755 correct CONTIG scaffold4005 360 unaligned CONTIG scaffold4001 378 unaligned CONTIG scaffold4006 477 unaligned CONTIG scaffold4008 474 unaligned CONTIG scaffold4007 451 unaligned CONTIG scaffold4009 42113 unaligned 11584917 11585477 1 561 CM091761.1 scaffold4011 100.0 True CONTIG scaffold4011 561 correct CONTIG scaffold4012 370 unaligned CONTIG scaffold4010 487 unaligned CONTIG scaffold4014 302 unaligned CONTIG scaffold4015 403 unaligned CONTIG scaffold4016 425 unaligned CONTIG scaffold4017 344 unaligned CONTIG scaffold4013 371 unaligned CONTIG scaffold4002 435 unaligned CONTIG scaffold4019 529 unaligned CONTIG scaffold4021 388 unaligned CONTIG scaffold4022 386 unaligned CONTIG scaffold4023 386 unaligned CONTIG scaffold4020 459 unaligned 8779398 8779941 544 1 CM091767.1 scaffold4025 97.43 True CONTIG scaffold4025 544 correct 15450763 15451657 917 1 CM091752.1 scaffold4026 95.31 True CONTIG scaffold4026 1718 correct CONTIG scaffold4027 409 unaligned 10465860 10466384 194 718 CM091765.1 scaffold4028 99.81 True CONTIG scaffold4028 718 correct 14296138 14296646 1 511 CM091752.1 scaffold4029 98.63 True CONTIG scaffold4029 514 correct 4161084 4162142 1079 1 CM091768.1 scaffold4030 97.5 True CONTIG scaffold4030 1079 correct CONTIG scaffold4031 366 unaligned CONTIG scaffold4032 384 unaligned 1910095 1910700 1 606 CM091764.1 scaffold4033 97.69 True CONTIG scaffold4033 606 correct CONTIG scaffold4024 345 unaligned CONTIG scaffold4035 358 unaligned CONTIG scaffold4036 427 unaligned CONTIG scaffold4037 404 unaligned CONTIG scaffold4038 490 unaligned 7683938 7684503 901 323 CM091767.1 scaffold4039 100.0 True CONTIG scaffold4039 901 correct 64946 65546 1 600 CM091763.1 scaffold4040 99.67 True CONTIG scaffold4040 600 correct CONTIG scaffold4041 403 unaligned CONTIG scaffold4042 449 unaligned CONTIG scaffold4043 457 unaligned CONTIG scaffold4034 447 unaligned 16869625 16870178 1 554 CM091752.1 scaffold4044 100.0 True CONTIG scaffold4044 554 correct CONTIG scaffold4045 3095 unaligned CONTIG scaffold4046 330 unaligned CONTIG scaffold4048 349 unaligned CONTIG scaffold4049 475 unaligned 15815116 15816015 900 1 CM091752.1 scaffold4050 99.67 True CONTIG scaffold4050 900 correct 56314 57050 737 1 CM091755.1 scaffold4051 99.86 True CONTIG scaffold4051 737 correct CONTIG scaffold4052 466 unaligned CONTIG scaffold4053 390 unaligned 9903159 9904401 1 1243 CM091756.1 scaffold4054 99.76 True CONTIG scaffold4054 1243 correct CONTIG scaffold4055 568 unaligned CONTIG scaffold4056 409 unaligned CONTIG scaffold4047 864 unaligned CONTIG scaffold4058 477 unaligned 13664603 13667336 2754 1 CM091755.1 scaffold4059 98.8 True CONTIG scaffold4059 2754 correct CONTIG scaffold4057 481 unaligned CONTIG scaffold4060 509 unaligned 139884 140553 670 1 CM091764.1 scaffold4061 99.85 True CONTIG scaffold4061 670 correct CONTIG scaffold4063 427 unaligned 3718285 3720422 2138 1 CM091760.1 scaffold4064 99.91 True CONTIG scaffold4064 2138 correct 16127820 16129098 6 1281 CM091752.1 scaffold4062 98.98 True fake: scaffold gap size wrong estimation (local) 16131471 16132660 1790 2980 CM091752.1 scaffold4062 99.08 True CONTIG scaffold4062 2980 correct CONTIG scaffold4066 421 unaligned CONTIG scaffold4067 463 unaligned CONTIG scaffold4068 507 unaligned CONTIG scaffold4069 487 unaligned CONTIG scaffold4065 382 unaligned CONTIG scaffold4071 390 unaligned 4099832 4101353 1538 1 CM091768.1 scaffold4072 99.8 True CONTIG scaffold4072 1538 correct CONTIG scaffold4073 401 unaligned CONTIG scaffold4074 475 unaligned CONTIG scaffold4075 383 unaligned 15323359 15324937 1597 1 CM091754.1 scaffold4076 99.87 True CONTIG scaffold4076 1597 correct CONTIG scaffold4077 622 unaligned CONTIG scaffold4078 452 unaligned CONTIG scaffold4079 412 unaligned CONTIG scaffold4080 446 unaligned CONTIG scaffold4081 370 unaligned 9147314 9148114 801 1 CM091767.1 scaffold4082 99.38 True CONTIG scaffold4082 801 correct CONTIG scaffold4083 443 unaligned CONTIG scaffold4070 469 unaligned 17140122 17140965 866 22 CM091752.1 scaffold4085 99.64 True CONTIG scaffold4085 866 correct 4199541 4200050 1 510 CM091752.1 scaffold4086 96.67 True CONTIG scaffold4086 558 correct CONTIG scaffold4087 480 unaligned 11040161 11041357 1197 1 CM091765.1 scaffold4088 100.0 True indel: indel (<= 5bp) 11036986 11040116 4373 1243 CM091765.1 scaffold4088 99.97 True CONTIG scaffold4088 4418 correct CONTIG scaffold4089 265 unaligned 6395926 6397153 1243 1 CM091768.1 scaffold4090 97.51 True CONTIG scaffold4090 1243 correct CONTIG scaffold4091 392 unaligned 8151163 8151746 584 1 CM091767.1 scaffold4092 99.83 True CONTIG scaffold4092 584 correct CONTIG scaffold4093 433 unaligned 15606039 15606557 1 519 CM091752.1 scaffold4094 100.0 True CONTIG scaffold4094 519 correct CONTIG scaffold4095 607 unaligned 7205754 7206501 748 1 CM091758.1 scaffold4096 99.47 True CONTIG scaffold4096 748 correct CONTIG scaffold4097 394 unaligned 16133948 16134567 623 1 CM091753.1 scaffold4098 98.88 True fake: scaffold gap size wrong estimation (local) 16131378 16133229 3314 1450 CM091753.1 scaffold4098 98.77 True CONTIG scaffold4098 3589 correct CONTIG scaffold4099 304 unaligned CONTIG scaffold4100 526 unaligned CONTIG scaffold4101 478 unaligned 399046 399737 1 708 CM091764.1 scaffold4102 97.74 True CONTIG scaffold4102 708 correct CONTIG scaffold4103 433 unaligned CONTIG scaffold4084 720 unaligned CONTIG scaffold4105 633 unaligned 15528022 15529071 3807 2758 CM091752.1 scaffold4106 98.48 True CONTIG scaffold4106 3963 correct CONTIG scaffold4107 457 unaligned 16281247 16282040 1 795 CM091752.1 scaffold4108 97.86 True CONTIG scaffold4108 795 correct CONTIG scaffold4109 551 unaligned CONTIG scaffold4104 563 unaligned CONTIG scaffold4110 401 unaligned CONTIG scaffold4111 343 unaligned CONTIG scaffold4113 352 unaligned CONTIG scaffold4114 331 unaligned CONTIG scaffold4112 353 unaligned 16445869 16446610 1 752 CM091752.1 scaffold4115 96.02 True CONTIG scaffold4115 752 correct 15495870 15496399 1 524 CM091752.1 scaffold4116 97.92 True CONTIG scaffold4116 542 correct CONTIG scaffold4117 463 unaligned CONTIG scaffold4118 484 unaligned CONTIG scaffold4120 450 unaligned CONTIG scaffold4119 464 unaligned CONTIG scaffold4122 281 unaligned 3939710 3940433 744 1 CM091768.1 scaffold4123 96.91 True CONTIG scaffold4123 744 correct CONTIG scaffold4124 938 unaligned CONTIG scaffold4125 354 unaligned CONTIG scaffold4126 603 unaligned 16144357 16144968 800 189 CM091752.1 scaffold4127 96.41 True CONTIG scaffold4127 800 correct 17198744 17199261 518 1 CM091752.1 scaffold4128 100.0 True CONTIG scaffold4128 518 correct CONTIG scaffold4129 473 unaligned CONTIG scaffold4130 461 unaligned CONTIG scaffold4131 455 unaligned CONTIG scaffold4132 476 unaligned 3329200 3330585 1 1386 CM091753.1 scaffold4133 99.78 True CONTIG scaffold4133 1386 correct 2637610 2638664 1055 1 CM091761.1 scaffold4134 99.53 True CONTIG scaffold4134 1055 correct CONTIG scaffold4121 158444 unaligned 11016449 11017059 15 626 CM091766.1 scaffold4136 99.84 True CONTIG scaffold4136 626 correct 16439463 16439977 515 1 CM091752.1 scaffold4137 100.0 True CONTIG scaffold4137 515 correct 3716951 3717705 755 1 CM091760.1 scaffold4138 99.47 True CONTIG scaffold4138 755 correct 3508710 3510567 2115 258 CM091751.1 scaffold4135 99.67 True relocation, inconsistency = -8730 3513968 3517439 5589 2116 CM091751.1 scaffold4135 99.71 True CONTIG scaffold4135 5589 misassembled CONTIG scaffold4140 429 unaligned CONTIG scaffold4141 969 unaligned CONTIG scaffold4142 632 unaligned 7982922 7984328 31 1437 CM091767.1 scaffold4143 100.0 True CONTIG scaffold4143 1437 correct CONTIG scaffold4144 468 unaligned CONTIG scaffold4145 661 unaligned 9858760 9859786 1 1035 CM091765.1 scaffold4146 98.65 True CONTIG scaffold4146 1035 correct 1939595 1940307 1 718 CM091764.1 scaffold4147 96.94 True CONTIG scaffold4147 718 correct CONTIG scaffold4148 4484 unaligned CONTIG scaffold4149 424 unaligned CONTIG scaffold4150 596 unaligned CONTIG scaffold4151 546 unaligned 16222674 16223642 1 969 CM091752.1 scaffold4152 100.0 True CONTIG scaffold4152 969 correct 4122690 4123799 1 1111 CM091764.1 scaffold4153 99.55 True indel: stretch of mismatches 4123912 4125154 1224 2467 CM091764.1 scaffold4153 98.63 True CONTIG scaffold4153 2467 correct CONTIG scaffold4154 1014 unaligned 3905214 3905725 1 512 CM091768.1 scaffold4155 100.0 True CONTIG scaffold4155 512 correct 4187103 4187801 1 699 CM091768.1 scaffold4156 100.0 True CONTIG scaffold4156 699 correct CONTIG scaffold4157 447 unaligned CONTIG scaffold4158 914 unaligned CONTIG scaffold4159 436 unaligned CONTIG scaffold4160 430 unaligned 15321846 15322949 1143 1 CM091754.1 scaffold4161 99.9 True CONTIG scaffold4161 1143 correct CONTIG scaffold4162 82658 unaligned CONTIG scaffold4163 711 unaligned CONTIG scaffold4164 454 unaligned 4642529 4643042 1 514 CM091754.1 scaffold4165 100.0 True CONTIG scaffold4165 931 correct 3126233 3128355 2125 1 CM091752.1 scaffold4166 99.86 True CONTIG scaffold4166 2125 correct 107607 108516 1 910 CM091764.1 scaffold4167 100.0 True CONTIG scaffold4167 910 correct CONTIG scaffold4168 386 unaligned CONTIG scaffold4169 386 unaligned CONTIG scaffold4170 424 unaligned 3567521 3568061 1 541 CM091768.1 scaffold4171 100.0 True CONTIG scaffold4171 541 correct CONTIG scaffold4172 39164 unaligned CONTIG scaffold4173 429 unaligned CONTIG scaffold4174 367 unaligned 11298744 11299281 538 1 CM091766.1 scaffold4175 100.0 True CONTIG scaffold4175 538 correct 13493265 13498651 1 5384 CM091758.1 scaffold4176 99.89 True CONTIG scaffold4176 5384 correct CONTIG scaffold4177 655 unaligned CONTIG scaffold4178 574 unaligned CONTIG scaffold4179 431 unaligned 5623474 5624172 699 1 CM091768.1 scaffold4180 100.0 True CONTIG scaffold4180 699 correct 16456317 16459398 1 3081 CM091752.1 scaffold4181 99.97 True CONTIG scaffold4181 3091 correct CONTIG scaffold4182 777 unaligned 4486806 4488075 1270 1 CM091754.1 scaffold4183 99.69 True CONTIG scaffold4183 1270 correct 1953329 1959508 1 6179 CM091764.1 scaffold4184 98.87 True fake: scaffold gap size wrong estimation (local) 1960854 1961423 7528 8097 CM091764.1 scaffold4184 98.95 True CONTIG scaffold4184 8097 correct CONTIG scaffold4185 455 unaligned 9340337 9343290 2954 1 CM091752.1 scaffold4186 100.0 True CONTIG scaffold4186 2954 correct CONTIG scaffold4187 418 unaligned CONTIG scaffold4188 496 unaligned CONTIG scaffold4189 353 unaligned CONTIG scaffold4190 338 unaligned CONTIG scaffold4191 590 unaligned 15760448 15761652 1177 1 CM091757.1 scaffold4192 97.46 True CONTIG scaffold4192 1177 correct 8156546 8158544 1 1999 CM091767.1 scaffold4193 100.0 True CONTIG scaffold4193 1999 correct CONTIG scaffold4194 473 unaligned CONTIG scaffold4195 457 unaligned CONTIG scaffold4196 368 unaligned CONTIG scaffold4197 502 unaligned CONTIG scaffold4198 699 unaligned CONTIG scaffold4199 375 unaligned CONTIG scaffold4200 366 unaligned 7685909 7686476 1 568 CM091767.1 scaffold4201 100.0 True CONTIG scaffold4201 568 correct 5246127 5255033 8914 1 CM091768.1 scaffold4202 99.91 True CONTIG scaffold4202 8914 correct CONTIG scaffold4203 408 unaligned CONTIG scaffold4204 365 unaligned CONTIG scaffold4205 3646 unaligned CONTIG scaffold4206 507 unaligned CONTIG scaffold4207 402 unaligned CONTIG scaffold4208 465 unaligned CONTIG scaffold4209 377 unaligned CONTIG scaffold4210 909 unaligned CONTIG scaffold4211 872 unaligned 17330069 17330790 743 1 CM091753.1 scaffold4212 98.5 True CONTIG scaffold4212 743 correct CONTIG scaffold4213 495 unaligned CONTIG scaffold4214 592 unaligned 5410729 5412020 394 1685 CM091764.1 scaffold4215 100.0 True CONTIG scaffold4215 1685 correct 15761922 15764259 2320 1 CM091757.1 scaffold4216 99.19 True CONTIG scaffold4216 2320 correct 11008278 11011417 2 3136 CM091765.1 scaffold4217 99.81 True CONTIG scaffold4217 3136 correct 1372426 1372924 511 1 CM091764.1 scaffold4218 95.69 True CONTIG scaffold4218 511 correct 9185382 9186022 1 642 CM091767.1 scaffold4219 99.69 True CONTIG scaffold4219 642 correct 3943543 3945015 1 1473 CM091768.1 scaffold4220 100.0 True CONTIG scaffold4220 1473 correct CONTIG scaffold4221 793 unaligned CONTIG scaffold4222 311 unaligned CONTIG scaffold4223 368 unaligned 4353465 4355063 1 1595 CM091768.1 scaffold4224 98.62 True fake: scaffold gap size wrong estimation (local) 4355572 4356923 1717 3069 CM091768.1 scaffold4224 99.56 True CONTIG scaffold4224 3069 correct 2909710 2910613 1 904 CM091752.1 scaffold4225 99.89 True CONTIG scaffold4225 904 correct CONTIG scaffold4226 566 unaligned CONTIG scaffold4227 310 unaligned 11005910 11006417 447 961 CM091765.1 scaffold4228 97.11 True CONTIG scaffold4228 1439 correct CONTIG scaffold4229 338 unaligned 15329958 15330536 1 585 CM091754.1 scaffold4230 98.97 True CONTIG scaffold4230 585 correct 13814287 13815263 9 981 CM091752.1 scaffold4231 99.39 True CONTIG scaffold4231 981 correct CONTIG scaffold4232 347 unaligned 10294959 10295908 989 1 CM091765.1 scaffold4233 97.24 True fake: scaffold gap size wrong estimation (local) 10293645 10294821 2311 1135 CM091765.1 scaffold4233 99.75 True CONTIG scaffold4233 2496 correct CONTIG scaffold4234 569 unaligned CONTIG scaffold4235 473 unaligned CONTIG scaffold4236 375 unaligned CONTIG scaffold4237 7902 unaligned CONTIG scaffold4238 305 unaligned CONTIG scaffold4239 808 unaligned CONTIG scaffold4240 319 unaligned 7981523 7982198 668 1 CM091767.1 scaffold4241 98.67 True CONTIG scaffold4241 668 correct 2135109 2136346 1 1238 CM091764.1 scaffold4242 99.76 True CONTIG scaffold4242 1238 correct 13467527 13468338 813 1 CM091758.1 scaffold4243 99.88 True CONTIG scaffold4243 813 correct CONTIG scaffold4244 490 unaligned 16555214 16556049 836 1 CM091752.1 scaffold4245 99.52 True CONTIG scaffold4245 836 correct CONTIG scaffold4246 446 unaligned CONTIG scaffold3987 448 unaligned 7439014 7440115 83 1188 CM091764.1 scaffold4248 99.28 True CONTIG scaffold4248 1188 correct CONTIG scaffold4249 10512 unaligned 4576663 4579083 1 2447 CM091768.1 scaffold4250 98.9 True CONTIG scaffold4250 2447 correct 13816877 13817429 1 553 CM091752.1 scaffold4251 99.82 True CONTIG scaffold4251 553 correct 6245068 6245585 518 1 CM091768.1 scaffold4252 100.0 True CONTIG scaffold4252 518 correct 4718363 4719596 1234 1 CM091763.1 scaffold4253 99.92 True CONTIG scaffold4253 1236 correct CONTIG scaffold4254 483 unaligned CONTIG scaffold4255 434 unaligned CONTIG scaffold4256 565 unaligned 4226504 4227317 814 1 CM091768.1 scaffold4257 99.26 True CONTIG scaffold4257 814 correct 15327327 15328156 830 1 CM091752.1 scaffold4258 100.0 True CONTIG scaffold4258 830 correct 4155847 4156731 885 1 CM091768.1 scaffold4259 99.55 True CONTIG scaffold4259 885 correct 361748 362324 1 577 CM091764.1 scaffold4260 99.83 True CONTIG scaffold4260 577 correct 11129102 11129964 1 869 CM091766.1 scaffold4261 99.19 True CONTIG scaffold4261 869 correct 19031741 19032546 1 803 CM091751.1 scaffold4262 98.76 True CONTIG scaffold4262 803 correct 4521779 4524201 1 2423 CM091754.1 scaffold4263 100.0 True CONTIG scaffold4263 2423 correct 14818485 14819632 1 1147 CM091754.1 scaffold3962 99.38 True fake: scaffold gap size wrong estimation (local) 14820492 14821310 2553 3376 CM091754.1 scaffold3962 99.27 True fake: scaffold gap size wrong estimation (local) 14821408 14825226 3478 7330 CM091754.1 scaffold3962 99.71 True fake: scaffold gap size wrong estimation (local) 14825376 14826934 8764 10322 CM091754.1 scaffold3962 99.94 True fake: scaffold gap size wrong estimation (local) 14827046 14842404 10609 26740 CM091754.1 scaffold3962 99.33 True fake: scaffold gap size wrong estimation (local) 14842506 14843916 26880 28325 CM091754.1 scaffold3962 98.24 True fake: scaffold gap size wrong estimation (local) 14844026 14846713 28439 31139 CM091754.1 scaffold3962 99.3 True local misassembly 14846750 14850562 31322 35552 CM091754.1 scaffold3962 99.97 True fake: scaffold gap size wrong estimation (local) 14850782 14858434 36153 44294 CM091754.1 scaffold3962 99.48 True fake: scaffold gap size wrong estimation (local) 14858797 14865314 44992 51517 CM091754.1 scaffold3962 99.8 True fake: scaffold gap size wrong estimation (local) 14865685 14868989 52129 55606 CM091754.1 scaffold3962 99.45 True indel: indel (> 5bp) 14869213 14878034 55847 64799 CM091754.1 scaffold3962 99.02 True fake: scaffold gap size wrong estimation (local) 14878137 14881389 65186 68436 CM091754.1 scaffold3962 99.75 True fake: scaffold gap size wrong estimation (local) 14881624 14884475 69011 71869 CM091754.1 scaffold3962 99.54 True fake: scaffold gap size wrong estimation (local) 14884654 14889161 72664 77196 CM091754.1 scaffold3962 99.14 True fake: scaffold gap size wrong estimation (local) 14889313 14894139 77357 82228 CM091754.1 scaffold3962 99.52 True fake: scaffold gap size wrong estimation (local) 14894273 14897727 82585 86450 CM091754.1 scaffold3962 99.01 True fake: scaffold gap size wrong estimation (local) 14898067 14900663 86967 89577 CM091754.1 scaffold3962 99.43 True fake: scaffold gap size wrong estimation (local) 14900775 14906073 89697 95094 CM091754.1 scaffold3962 99.35 True fake: scaffold gap size wrong estimation (local) 14906726 14911326 96198 100823 CM091754.1 scaffold3962 99.55 True fake: scaffold gap size wrong estimation (local) 14911516 14912366 101077 101927 CM091754.1 scaffold3962 99.88 True fake: scaffold gap size wrong estimation (local) 14912683 14920738 103007 111341 CM091754.1 scaffold3962 98.57 True fake: scaffold gap size wrong estimation (local) 14920838 14925430 111445 116235 CM091754.1 scaffold3962 99.96 True CONTIG scaffold3962 116593 correct 1704462 1716597 1 12148 CM091765.1 scaffold4139 99.52 True fake: scaffold gap size wrong estimation (local) 1717002 1723310 12691 19382 CM091765.1 scaffold4139 99.38 True fake: scaffold gap size wrong estimation (local) 1723675 1744043 20056 41143 CM091765.1 scaffold4139 99.51 True fake: scaffold gap size wrong estimation (local) 1744330 1748163 41738 47243 CM091765.1 scaffold4139 99.35 True CONTIG scaffold4139 47596 correct 6273338 6329125 58425 1 CM091764.1 scaffold3943 98.67 True fake: scaffold gap size wrong estimation (local) 6076172 6273052 261634 59182 CM091764.1 scaffold3943 99.63 True indel: indel (> 5bp) 5875459 6076126 465878 261687 CM091764.1 scaffold3943 99.45 True CONTIG scaffold3943 465918 correct 5777069 5806376 1 29738 CM091756.1 scaffold4247 97.87 True CONTIG scaffold4247 29760 correct CONTIG scaffold4018 2799 unaligned 2708763 2962655 1 262219 CM091758.1 scaffold3600 98.8 True fake: scaffold gap size wrong estimation (local) 2962739 3274883 262770 587042 CM091758.1 scaffold3600 99.06 True local misassembly 3274948 3302306 587215 615558 CM091758.1 scaffold3600 99.55 True CONTIG scaffold3600 615558 correct 10406602 10598897 1 200271 CM091763.1 scaffold2490 98.95 True fake: scaffold gap size wrong estimation (local) 10599263 10607420 200806 208969 CM091763.1 scaffold2490 99.72 True fake: scaffold gap size wrong estimation (local) 10607396 10608284 209226 210122 CM091763.1 scaffold2490 100.0 True fake: scaffold gap size wrong estimation (local) 10608983 10677138 210759 280547 CM091763.1 scaffold2490 98.99 True fake: scaffold gap size wrong estimation (local) 10677241 10709300 281473 313552 CM091763.1 scaffold2490 99.67 True indel: indel (<= 5bp) 10709352 10726230 313603 330465 CM091763.1 scaffold2490 99.63 True fake: not a misassembly (possible transposable element) 11104265 11105054 330466 331255 CM091758.1 scaffold2490 100.0 True fake: not a misassembly (possible transposable element) 10726295 10782989 331256 390593 CM091763.1 scaffold2490 98.73 True fake: not a misassembly (possible transposable element) 963235 963836 390601 391202 CM091756.1 scaffold2490 100.0 True fake: not a misassembly (possible transposable element) 10783068 10791659 391203 400022 CM091763.1 scaffold2490 98.77 True indel: indel (<= 5bp) 10791743 10815111 400103 424782 CM091763.1 scaffold2490 99.13 True fake: scaffold gap size wrong estimation (local) 10815220 10906324 424889 518682 CM091763.1 scaffold2490 99.43 True fake: scaffold gap size wrong estimation (local) 10906414 11016464 518789 631469 CM091763.1 scaffold2490 99.48 True fake: scaffold gap size wrong estimation (local) 11016566 11043323 631571 661720 CM091763.1 scaffold2490 99.05 True fake: scaffold gap size wrong estimation (local) 11043791 11049086 662460 668114 CM091763.1 scaffold2490 99.28 True fake: scaffold gap size wrong estimation (local) 11049373 11057475 668484 676596 CM091763.1 scaffold2490 99.69 True fake: scaffold gap size wrong estimation (local) 11057758 11065206 676922 684566 CM091763.1 scaffold2490 98.91 True local misassembly 11065292 11161368 685023 783617 CM091763.1 scaffold2490 98.8 True fake: scaffold gap size wrong estimation (local) 11161356 11186925 784415 809943 CM091763.1 scaffold2490 99.46 True fake: scaffold gap size wrong estimation (local) 11187106 11228922 810500 853172 CM091763.1 scaffold2490 99.34 True fake: scaffold gap size wrong estimation (local) 11229021 11303272 854020 930356 CM091763.1 scaffold2490 97.94 True local misassembly 11302717 11314987 930357 942687 CM091763.1 scaffold2490 99.12 True indel: indel (> 5bp) 11315126 11367381 942861 997702 CM091763.1 scaffold2490 97.77 True fake: scaffold gap size wrong estimation (local) 11367798 11403840 998247 1037369 CM091763.1 scaffold2490 96.77 True fake: scaffold gap size wrong estimation (local) 11404351 11425353 1037805 1060092 CM091763.1 scaffold2490 99.05 True CONTIG scaffold2490 1060092 correct CONTIG C12380749 200 unaligned CONTIG C12380829 200 unaligned CONTIG C12380817 200 unaligned CONTIG C12380859 200 unaligned CONTIG C12380901 200 unaligned CONTIG C12380849 200 unaligned CONTIG C12380909 200 unaligned CONTIG C12380921 200 unaligned CONTIG C12380929 200 unaligned CONTIG C12380957 200 unaligned CONTIG C12380933 200 unaligned CONTIG C12380931 200 unaligned CONTIG C12380981 200 unaligned CONTIG C12381005 200 unaligned CONTIG C12381019 200 unaligned CONTIG C12381105 200 unaligned CONTIG C12381073 200 unaligned CONTIG C12381133 200 unaligned CONTIG C12381175 201 unaligned CONTIG C12381135 200 unaligned CONTIG C12381187 201 unaligned CONTIG C12381251 201 unaligned CONTIG C12381295 201 unaligned CONTIG C12381307 201 unaligned CONTIG C12381303 201 unaligned CONTIG C12381349 201 unaligned CONTIG C12381371 201 unaligned CONTIG C12380985 200 unaligned CONTIG C12381397 201 unaligned CONTIG C12381477 201 unaligned CONTIG C12381491 201 unaligned CONTIG C12381533 201 unaligned CONTIG C12381515 201 unaligned CONTIG C12381539 201 unaligned CONTIG C12381555 201 unaligned CONTIG C12381579 202 unaligned CONTIG C12381563 202 unaligned CONTIG C12381583 202 unaligned CONTIG C12381219 201 unaligned CONTIG C12381625 202 unaligned CONTIG C12381667 202 unaligned CONTIG C12381707 202 unaligned CONTIG C12381619 202 unaligned CONTIG C12381695 202 unaligned CONTIG C12381733 202 unaligned CONTIG C12381731 202 unaligned CONTIG C12381739 202 unaligned CONTIG C12381737 202 unaligned CONTIG C12381615 202 unaligned CONTIG C12381863 202 unaligned CONTIG C12381903 202 unaligned CONTIG C12381783 202 unaligned CONTIG C12381909 202 unaligned CONTIG C12381921 202 unaligned CONTIG C12381931 202 unaligned CONTIG C12381811 202 unaligned CONTIG C12382043 203 unaligned CONTIG C12382061 203 unaligned CONTIG C12382237 203 unaligned CONTIG C12382253 203 unaligned CONTIG C12382249 203 unaligned CONTIG C12382257 203 unaligned CONTIG C12382265 203 unaligned CONTIG C12382279 203 unaligned CONTIG C12382285 203 unaligned CONTIG C12382361 203 unaligned CONTIG C12382049 203 unaligned CONTIG C12382315 203 unaligned CONTIG C12382443 204 unaligned CONTIG C12382395 204 unaligned CONTIG C12382453 204 unaligned CONTIG C12382515 204 unaligned CONTIG C12382405 204 unaligned CONTIG C12382553 204 unaligned CONTIG C12382563 204 unaligned CONTIG C12382591 204 unaligned CONTIG C12382575 204 unaligned CONTIG C12382701 204 unaligned CONTIG C12382653 204 unaligned CONTIG C12382777 204 unaligned CONTIG C12382783 204 unaligned CONTIG C12382831 205 unaligned CONTIG C12382805 205 unaligned CONTIG C12382835 205 unaligned CONTIG C12382153 203 unaligned CONTIG C12382873 205 unaligned CONTIG C12381291 201 unaligned CONTIG C12382903 205 unaligned CONTIG C12382895 205 unaligned CONTIG C12382865 205 unaligned CONTIG C12383005 205 unaligned CONTIG C12383045 205 unaligned CONTIG C12383057 205 unaligned CONTIG C12383113 205 unaligned CONTIG C12383133 205 unaligned CONTIG C12382991 205 unaligned CONTIG C12383177 205 unaligned CONTIG C12383155 205 unaligned CONTIG C12383245 206 unaligned CONTIG C12383191 205 unaligned CONTIG C12382961 205 unaligned CONTIG C12383347 206 unaligned CONTIG C12383373 206 unaligned CONTIG C12383367 206 unaligned CONTIG C12383425 206 unaligned CONTIG C12383409 206 unaligned CONTIG C12383429 206 unaligned CONTIG C12383509 206 unaligned CONTIG C12383463 206 unaligned CONTIG C12383547 206 unaligned CONTIG C12383595 206 unaligned CONTIG C12383633 207 unaligned CONTIG C12382891 205 unaligned CONTIG C12383561 206 unaligned CONTIG C12383661 207 unaligned CONTIG C12383675 207 unaligned CONTIG C12383683 207 unaligned CONTIG C12383687 207 unaligned CONTIG C12383711 207 unaligned CONTIG C12383423 206 unaligned CONTIG C12383715 207 unaligned CONTIG C12383869 207 unaligned CONTIG C12383731 207 unaligned CONTIG C12383867 207 unaligned CONTIG C12383925 207 unaligned CONTIG C12383939 207 unaligned CONTIG C12383965 208 unaligned CONTIG C12383917 207 unaligned CONTIG C12383845 207 unaligned CONTIG C12384169 208 unaligned CONTIG C12383989 208 unaligned CONTIG C12383875 207 unaligned CONTIG C12384085 208 unaligned CONTIG C12384193 208 unaligned CONTIG C12384217 208 unaligned CONTIG C12383981 208 unaligned CONTIG C12384301 208 unaligned CONTIG C12384233 208 unaligned CONTIG C12384345 209 unaligned CONTIG C12384305 208 unaligned CONTIG C12384243 208 unaligned CONTIG C12384385 209 unaligned CONTIG C12384465 209 unaligned CONTIG C12384313 208 unaligned CONTIG C12384303 208 unaligned CONTIG C12384495 209 unaligned CONTIG C12384441 209 unaligned CONTIG C12384475 209 unaligned CONTIG C12384517 209 unaligned CONTIG C12384535 209 unaligned CONTIG C12384609 209 unaligned CONTIG C12384529 209 unaligned CONTIG C12384575 209 unaligned CONTIG C12384671 209 unaligned CONTIG C12384675 210 unaligned CONTIG C12384637 209 unaligned CONTIG C12384667 209 unaligned CONTIG C12384765 210 unaligned CONTIG C12384885 210 unaligned CONTIG C12384837 210 unaligned CONTIG C12384703 210 unaligned CONTIG C12384933 210 unaligned CONTIG C12384941 210 unaligned CONTIG C12384831 210 unaligned CONTIG C12384947 210 unaligned CONTIG C12384953 210 unaligned CONTIG C12384891 210 unaligned CONTIG C12384959 210 unaligned CONTIG C12384731 210 unaligned CONTIG C12385041 210 unaligned CONTIG C12385015 210 unaligned CONTIG C12385055 210 unaligned CONTIG C12385093 211 unaligned CONTIG C12385089 211 unaligned CONTIG C12385221 211 unaligned CONTIG C12385107 211 unaligned CONTIG C12385049 210 unaligned CONTIG C12385239 211 unaligned CONTIG C12385235 211 unaligned CONTIG C12385241 211 unaligned CONTIG C12385259 211 unaligned CONTIG C12385247 211 unaligned CONTIG C12385325 211 unaligned CONTIG C12385323 211 unaligned CONTIG C12385299 211 unaligned CONTIG C12385445 212 unaligned CONTIG C12385401 211 unaligned CONTIG C12385331 211 unaligned CONTIG C12385371 211 unaligned CONTIG C12385469 212 unaligned CONTIG C12385549 212 unaligned CONTIG C12385523 212 unaligned CONTIG C12385475 212 unaligned CONTIG C12385553 212 unaligned CONTIG C12385677 212 unaligned CONTIG C12385697 212 unaligned CONTIG C12385649 212 unaligned CONTIG C12385783 212 unaligned CONTIG C12385707 212 unaligned CONTIG C12385725 212 unaligned CONTIG C12385755 212 unaligned CONTIG C12385803 212 unaligned CONTIG C12385861 213 unaligned CONTIG C12385845 213 unaligned CONTIG C12385981 213 unaligned CONTIG C12385921 213 unaligned CONTIG C12386043 213 unaligned CONTIG C12386067 213 unaligned CONTIG C12386069 213 unaligned CONTIG C12386031 213 unaligned CONTIG C12386077 213 unaligned CONTIG C12386097 213 unaligned CONTIG C12386073 213 unaligned CONTIG C12386127 213 unaligned CONTIG C12386081 213 unaligned CONTIG C12386179 214 unaligned CONTIG C12386237 214 unaligned CONTIG C12386281 214 unaligned CONTIG C12386361 214 unaligned CONTIG C12386393 214 unaligned CONTIG C12386433 214 unaligned CONTIG C12386419 214 unaligned CONTIG C12386451 214 unaligned CONTIG C12386459 214 unaligned CONTIG C12386455 214 unaligned CONTIG C12386453 214 unaligned CONTIG C12386479 214 unaligned CONTIG C12386463 214 unaligned CONTIG C12386537 215 unaligned CONTIG C12386521 215 unaligned CONTIG C12386565 215 unaligned CONTIG C12385181 211 unaligned CONTIG C12386589 215 unaligned CONTIG C12386685 215 unaligned CONTIG C12386693 215 unaligned CONTIG C12386739 215 unaligned CONTIG C12386719 215 unaligned CONTIG C12386755 215 unaligned CONTIG C12386577 215 unaligned CONTIG C12386815 215 unaligned CONTIG C12386797 215 unaligned CONTIG C12386819 215 unaligned CONTIG C12386861 216 unaligned CONTIG C12386839 215 unaligned CONTIG C12386889 216 unaligned CONTIG C12383859 207 unaligned CONTIG C12386955 216 unaligned CONTIG C12387001 216 unaligned CONTIG C12387051 216 unaligned CONTIG C12387079 216 unaligned CONTIG C12387145 216 unaligned CONTIG C12387121 216 unaligned CONTIG C12387181 217 unaligned CONTIG C12387185 217 unaligned CONTIG C12387233 217 unaligned CONTIG C12386879 216 unaligned CONTIG C12387203 217 unaligned CONTIG C12383069 205 unaligned CONTIG C12387279 217 unaligned CONTIG C12387127 216 unaligned CONTIG C12387293 217 unaligned CONTIG C12387235 217 unaligned CONTIG C12387335 217 unaligned CONTIG C12387333 217 unaligned CONTIG C12387353 217 unaligned CONTIG C12387373 217 unaligned CONTIG C12387381 217 unaligned CONTIG C12387343 217 unaligned CONTIG C12387405 217 unaligned CONTIG C12387415 217 unaligned CONTIG C12387445 217 unaligned CONTIG C12387409 217 unaligned CONTIG C12387447 217 unaligned CONTIG C12387643 218 unaligned CONTIG C12387625 218 unaligned CONTIG C12387699 218 unaligned CONTIG C12387653 218 unaligned CONTIG C12387725 218 unaligned CONTIG C12387809 219 unaligned CONTIG C12387831 219 unaligned CONTIG C12387367 217 unaligned CONTIG C12387941 219 unaligned CONTIG C12387973 219 unaligned CONTIG C12387991 219 unaligned CONTIG C12387997 219 unaligned CONTIG C12387971 219 unaligned CONTIG C12386641 215 unaligned CONTIG C12388051 219 unaligned CONTIG C12387735 219 unaligned CONTIG C12388071 220 unaligned CONTIG C12388005 219 unaligned CONTIG C12388073 220 unaligned CONTIG C12388211 220 unaligned CONTIG C12388121 220 unaligned CONTIG C12388057 219 unaligned CONTIG C12388133 220 unaligned CONTIG C12388243 220 unaligned CONTIG C12388379 220 unaligned CONTIG C12388367 220 unaligned CONTIG C12388273 220 unaligned CONTIG C12388389 220 unaligned CONTIG C12388467 221 unaligned CONTIG C12388445 221 unaligned CONTIG C12388481 221 unaligned CONTIG C12388575 221 unaligned CONTIG C12388625 221 unaligned CONTIG C12388573 221 unaligned CONTIG C12388649 221 unaligned CONTIG C12388673 221 unaligned CONTIG C12388247 220 unaligned CONTIG C12388653 221 unaligned CONTIG C12388695 221 unaligned CONTIG C12388777 222 unaligned CONTIG C12388671 221 unaligned CONTIG C12388719 221 unaligned CONTIG C12388815 222 unaligned CONTIG C12388823 222 unaligned CONTIG C12385815 213 unaligned CONTIG C12388971 222 unaligned CONTIG C12388945 222 unaligned CONTIG C12388891 222 unaligned CONTIG C12389019 223 unaligned CONTIG C12388923 222 unaligned CONTIG C12389071 223 unaligned CONTIG C12389103 223 unaligned CONTIG C12389011 223 unaligned CONTIG C12389037 223 unaligned CONTIG C12389051 223 unaligned CONTIG C12389167 223 unaligned CONTIG C12389129 223 unaligned CONTIG C12389183 223 unaligned CONTIG C12389149 223 unaligned CONTIG C12389215 223 unaligned CONTIG C12389247 223 unaligned CONTIG C12389203 223 unaligned CONTIG C12389267 223 unaligned CONTIG C12389333 224 unaligned CONTIG C12389337 224 unaligned CONTIG C12389281 223 unaligned CONTIG C12389289 223 unaligned CONTIG C12389353 224 unaligned CONTIG C12389383 224 unaligned CONTIG C12389403 224 unaligned CONTIG C12389405 224 unaligned CONTIG C12389393 224 unaligned CONTIG C12389421 224 unaligned CONTIG C12389461 224 unaligned CONTIG C12389473 224 unaligned CONTIG C12389145 223 unaligned CONTIG C12389481 224 unaligned CONTIG C12387851 219 unaligned CONTIG C12389521 224 unaligned CONTIG C12389489 224 unaligned CONTIG C12389501 224 unaligned CONTIG C12389519 224 unaligned CONTIG C12389553 224 unaligned CONTIG C12389505 224 unaligned CONTIG C12389523 224 unaligned CONTIG C12389601 224 unaligned CONTIG C12389563 224 unaligned CONTIG C12389641 225 unaligned CONTIG C12389587 224 unaligned CONTIG C12389631 225 unaligned CONTIG C12389581 224 unaligned CONTIG C12389649 225 unaligned CONTIG C12389329 224 unaligned CONTIG C12389647 225 unaligned CONTIG C12389695 225 unaligned CONTIG C12389751 225 unaligned CONTIG C12389651 225 unaligned CONTIG C12389781 225 unaligned CONTIG C12389753 225 unaligned CONTIG C12389787 225 unaligned CONTIG C12389867 225 unaligned CONTIG C12389771 225 unaligned CONTIG C12389817 225 unaligned CONTIG C12389837 225 unaligned CONTIG C12389885 225 unaligned CONTIG C12389869 225 unaligned CONTIG C12389721 225 unaligned CONTIG C12389921 225 unaligned CONTIG C12389951 226 unaligned CONTIG C12390073 226 unaligned CONTIG C12389991 226 unaligned CONTIG C12389937 226 unaligned CONTIG C12390145 226 unaligned CONTIG C12390003 226 unaligned CONTIG C12390111 226 unaligned CONTIG C12390135 226 unaligned CONTIG C12390161 226 unaligned CONTIG C12389987 226 unaligned CONTIG C12390183 227 unaligned CONTIG C12390033 226 unaligned CONTIG C12390165 226 unaligned CONTIG C12390177 227 unaligned CONTIG C12390427 227 unaligned CONTIG C12390459 227 unaligned CONTIG C12390253 227 unaligned CONTIG C12390569 228 unaligned CONTIG C12390371 227 unaligned CONTIG C12390555 228 unaligned CONTIG C12390229 227 unaligned CONTIG C12390623 228 unaligned CONTIG C12390683 228 unaligned CONTIG C12390617 228 unaligned CONTIG C12390171 226 unaligned CONTIG C12390747 228 unaligned CONTIG C12390685 228 unaligned CONTIG C12390845 229 unaligned CONTIG C12390767 229 unaligned CONTIG C12390727 228 unaligned CONTIG C12390885 229 unaligned CONTIG C12390703 228 unaligned CONTIG C12390901 229 unaligned CONTIG C12390889 229 unaligned CONTIG C12390973 229 unaligned CONTIG C12390935 229 unaligned CONTIG C12391095 230 unaligned CONTIG C12390903 229 unaligned CONTIG C12391089 230 unaligned CONTIG C12391101 230 unaligned CONTIG C12391013 229 unaligned CONTIG C12391231 230 unaligned CONTIG C12391213 230 unaligned CONTIG C12391243 230 unaligned CONTIG C12391119 230 unaligned CONTIG C12391279 230 unaligned CONTIG C12391389 231 unaligned CONTIG C12391407 231 unaligned CONTIG C12391473 231 unaligned CONTIG C12390337 227 unaligned CONTIG C12391477 231 unaligned CONTIG C12391519 231 unaligned CONTIG C12391551 231 unaligned CONTIG C12391509 231 unaligned CONTIG C12391553 231 unaligned CONTIG C12391605 231 unaligned CONTIG C12391625 232 unaligned CONTIG C12391611 231 unaligned CONTIG C12391641 232 unaligned CONTIG C12391329 231 unaligned CONTIG C12391657 232 unaligned CONTIG C12391607 231 unaligned CONTIG C12391823 232 unaligned CONTIG C12391665 232 unaligned CONTIG C12391809 232 unaligned CONTIG C12391761 232 unaligned CONTIG C12391731 232 unaligned CONTIG C12391829 232 unaligned CONTIG C12391825 232 unaligned CONTIG C12391981 233 unaligned CONTIG C12391851 232 unaligned CONTIG C12391883 233 unaligned CONTIG C12391961 233 unaligned CONTIG C12391991 233 unaligned CONTIG C12391903 233 unaligned CONTIG C12386495 215 unaligned CONTIG C12392063 233 unaligned CONTIG C12392073 233 unaligned CONTIG C12391997 233 unaligned CONTIG C12392373 234 unaligned CONTIG C12392109 233 unaligned CONTIG C12392181 234 unaligned CONTIG C12392387 234 unaligned CONTIG C12392273 234 unaligned CONTIG C12392031 233 unaligned CONTIG C12392415 235 unaligned CONTIG C12392419 235 unaligned CONTIG C12392425 235 unaligned CONTIG C12392393 234 unaligned CONTIG C12392435 235 unaligned CONTIG C12392189 234 unaligned CONTIG C12392101 233 unaligned CONTIG C12392521 235 unaligned CONTIG C12392537 235 unaligned CONTIG C12392579 235 unaligned CONTIG C12392413 235 unaligned CONTIG C12392591 235 unaligned CONTIG C12392597 235 unaligned CONTIG C12392683 236 unaligned CONTIG C12392473 235 unaligned CONTIG C12392609 235 unaligned CONTIG C12392785 236 unaligned CONTIG C12392655 235 unaligned CONTIG C12392801 236 unaligned CONTIG C12392799 236 unaligned CONTIG C12392805 236 unaligned CONTIG C12392907 236 unaligned CONTIG C12392429 235 unaligned CONTIG C12392989 237 unaligned CONTIG C12392803 236 unaligned CONTIG C12392823 236 unaligned CONTIG C12392981 237 unaligned CONTIG C12393055 237 unaligned CONTIG C12393085 237 unaligned CONTIG C12392685 236 unaligned CONTIG C12393087 237 unaligned CONTIG C12393137 237 unaligned CONTIG C12393153 237 unaligned CONTIG C12393173 237 unaligned CONTIG C12393041 237 unaligned CONTIG C12393083 237 unaligned CONTIG C12393193 238 unaligned CONTIG C12393151 237 unaligned CONTIG C12393205 238 unaligned CONTIG C12393277 238 unaligned CONTIG C12393305 238 unaligned CONTIG C12393321 238 unaligned CONTIG C12393297 238 unaligned CONTIG C12393317 238 unaligned CONTIG C12393339 238 unaligned CONTIG C12393213 238 unaligned CONTIG C12393385 238 unaligned CONTIG C12393429 238 unaligned CONTIG C12393405 238 unaligned CONTIG C12393349 238 unaligned CONTIG C12393445 239 unaligned CONTIG C12393441 239 unaligned CONTIG C12393601 239 unaligned CONTIG C12392657 235 unaligned CONTIG C12393345 238 unaligned CONTIG C12393517 239 unaligned CONTIG C12393439 238 unaligned CONTIG C12393675 239 unaligned CONTIG C12393811 240 unaligned CONTIG C12393667 239 unaligned CONTIG C12393785 240 unaligned CONTIG C12393827 240 unaligned CONTIG C12393701 240 unaligned CONTIG C12393873 240 unaligned CONTIG C12393529 239 unaligned CONTIG C12393715 240 unaligned CONTIG C12393979 241 unaligned CONTIG C12394057 241 unaligned CONTIG C12393849 240 unaligned CONTIG C12394029 241 unaligned CONTIG C12393629 239 unaligned CONTIG C12394069 241 unaligned CONTIG C12394059 241 unaligned CONTIG C12394117 241 unaligned CONTIG C12394153 242 unaligned CONTIG C12394007 241 unaligned CONTIG C12394091 241 unaligned CONTIG C12394145 242 unaligned CONTIG C12394239 242 unaligned CONTIG C12394307 242 unaligned CONTIG C12394479 243 unaligned CONTIG C12394245 242 unaligned CONTIG C12394279 242 unaligned CONTIG C12394613 244 unaligned CONTIG C12394315 242 unaligned CONTIG C12394515 243 unaligned CONTIG C12394485 243 unaligned CONTIG C12394567 243 unaligned CONTIG C12394621 244 unaligned CONTIG C12394785 244 unaligned CONTIG C12394821 244 unaligned CONTIG C12394827 244 unaligned CONTIG C12394875 245 unaligned CONTIG C12394585 243 unaligned CONTIG C12394647 244 unaligned CONTIG C12394637 244 unaligned CONTIG C12394935 245 unaligned CONTIG C12394275 242 unaligned CONTIG C12394979 245 unaligned CONTIG C12395041 246 unaligned CONTIG C12395001 245 unaligned CONTIG C12395067 246 unaligned CONTIG C12395103 246 unaligned CONTIG C12395121 246 unaligned CONTIG C12395255 246 unaligned CONTIG C12395159 246 unaligned CONTIG C12394933 245 unaligned CONTIG C12395123 246 unaligned CONTIG C12395089 246 unaligned CONTIG C12395307 247 unaligned CONTIG C12395265 246 unaligned CONTIG C12395293 247 unaligned CONTIG C12395495 247 unaligned CONTIG C12395341 247 unaligned CONTIG C12395497 247 unaligned CONTIG C12395275 246 unaligned CONTIG C12395279 246 unaligned CONTIG C12395527 247 unaligned CONTIG C12395537 247 unaligned CONTIG C12395505 247 unaligned CONTIG C12395591 248 unaligned CONTIG C12395609 248 unaligned CONTIG C12395605 248 unaligned CONTIG C12395619 248 unaligned CONTIG C12395633 248 unaligned CONTIG C12395637 248 unaligned CONTIG C12395631 248 unaligned CONTIG C12395291 247 unaligned CONTIG C12395533 247 unaligned CONTIG C12395649 248 unaligned CONTIG C12395761 249 unaligned CONTIG C12395695 248 unaligned CONTIG C12395829 249 unaligned CONTIG C12395865 249 unaligned CONTIG C12395859 249 unaligned CONTIG C12395723 248 unaligned CONTIG C12395903 249 unaligned CONTIG C12395819 249 unaligned CONTIG C12395985 249 unaligned CONTIG C12395867 249 unaligned CONTIG C12396037 250 unaligned CONTIG C12396183 250 unaligned CONTIG C12396119 250 unaligned CONTIG C12396165 250 unaligned CONTIG C12396327 251 unaligned CONTIG C12396063 250 unaligned CONTIG C12396477 252 unaligned CONTIG C12396429 251 unaligned CONTIG C12396289 251 unaligned CONTIG C12396067 250 unaligned CONTIG C12396567 252 unaligned CONTIG C12396493 252 unaligned CONTIG C12396631 252 unaligned CONTIG C12396277 251 unaligned CONTIG C12396663 252 unaligned CONTIG C12396653 252 unaligned CONTIG C12396695 253 unaligned CONTIG C12396857 253 unaligned CONTIG C12396847 253 unaligned CONTIG C12396691 253 unaligned CONTIG C12396957 254 unaligned CONTIG C12396917 254 unaligned CONTIG C12387257 217 unaligned CONTIG C12396905 253 unaligned CONTIG C12396783 253 unaligned CONTIG C12397025 254 unaligned CONTIG C12397045 254 unaligned CONTIG C12397109 254 unaligned CONTIG C12397037 254 unaligned CONTIG C12397011 254 unaligned CONTIG C12397133 254 unaligned CONTIG C12397111 254 unaligned CONTIG C12397155 255 unaligned CONTIG C12397173 255 unaligned CONTIG C12397099 254 unaligned CONTIG C12397211 255 unaligned CONTIG C12397157 255 unaligned CONTIG C12397227 255 unaligned CONTIG C12397213 255 unaligned CONTIG C12397259 255 unaligned CONTIG C12397235 255 unaligned CONTIG C12397287 255 unaligned CONTIG C12397131 254 unaligned CONTIG C12397389 256 unaligned CONTIG C12397303 255 unaligned CONTIG C12397291 255 unaligned CONTIG C12397315 255 unaligned CONTIG C12397431 256 unaligned CONTIG C12397267 255 unaligned CONTIG C12397503 256 unaligned CONTIG C12397549 257 unaligned CONTIG C12397531 256 unaligned CONTIG C12397641 257 unaligned CONTIG C12397533 256 unaligned CONTIG C12397655 257 unaligned CONTIG C12397695 257 unaligned CONTIG C12397663 257 unaligned CONTIG C12397679 257 unaligned CONTIG C12397443 256 unaligned CONTIG C12397711 257 unaligned CONTIG C12397707 257 unaligned CONTIG C12397787 258 unaligned CONTIG C12397765 258 unaligned CONTIG C12397875 258 unaligned CONTIG C12397837 258 unaligned CONTIG C12397873 258 unaligned CONTIG C12397915 258 unaligned CONTIG C12397893 258 unaligned CONTIG C12397927 259 unaligned CONTIG C12398029 259 unaligned CONTIG C12398049 259 unaligned CONTIG C12398007 259 unaligned CONTIG C12398065 259 unaligned CONTIG C12398183 260 unaligned CONTIG C12398109 260 unaligned CONTIG C12398247 260 unaligned CONTIG C12397643 257 unaligned CONTIG C12398285 260 unaligned CONTIG C12398311 261 unaligned CONTIG C12398267 260 unaligned CONTIG C12398245 260 unaligned CONTIG C12398321 261 unaligned CONTIG C12398423 261 unaligned CONTIG C12398081 259 unaligned CONTIG C12398489 261 unaligned CONTIG C12398437 261 unaligned CONTIG C12398453 261 unaligned CONTIG C12398389 261 unaligned CONTIG C12398491 261 unaligned CONTIG C12398555 262 unaligned CONTIG C12398819 263 unaligned CONTIG C12398549 262 unaligned CONTIG C12398811 263 unaligned CONTIG C12398781 263 unaligned CONTIG C12398913 263 unaligned CONTIG C12398633 262 unaligned CONTIG C12398953 264 unaligned CONTIG C12398859 263 unaligned CONTIG C12398861 263 unaligned CONTIG C12399187 265 unaligned CONTIG C12399137 264 unaligned CONTIG C12399199 265 unaligned CONTIG C12399023 264 unaligned CONTIG C12399239 265 unaligned CONTIG C12399055 264 unaligned CONTIG C12399271 265 unaligned CONTIG C12399337 265 unaligned CONTIG C12399321 265 unaligned CONTIG C12399367 266 unaligned CONTIG C12399395 266 unaligned CONTIG C12399427 266 unaligned CONTIG C12399335 265 unaligned CONTIG C12399501 266 unaligned CONTIG C12399609 267 unaligned CONTIG C12399475 266 unaligned CONTIG C12399659 267 unaligned CONTIG C12399713 267 unaligned CONTIG C12399697 267 unaligned CONTIG C12399715 268 unaligned CONTIG C12399621 267 unaligned CONTIG C12399765 268 unaligned CONTIG C12399789 268 unaligned CONTIG C12399289 265 unaligned CONTIG C12399771 268 unaligned CONTIG C12399893 268 unaligned CONTIG C12399917 269 unaligned CONTIG C12399923 269 unaligned CONTIG C12399865 268 unaligned CONTIG C12399399 266 unaligned CONTIG C12399925 269 unaligned CONTIG C12399853 268 unaligned CONTIG C12396865 253 unaligned CONTIG C12399977 269 unaligned CONTIG C12399971 269 unaligned CONTIG C12399993 269 unaligned CONTIG C12399929 269 unaligned CONTIG C12399999 269 unaligned CONTIG C12400085 270 unaligned CONTIG C12400267 271 unaligned CONTIG C12400349 271 unaligned CONTIG C12400179 270 unaligned CONTIG C12400513 272 unaligned CONTIG C12400551 272 unaligned CONTIG C12400077 270 unaligned CONTIG C12400343 271 unaligned CONTIG C12400533 272 unaligned CONTIG C12400641 273 unaligned CONTIG C12400605 273 unaligned CONTIG C12400603 273 unaligned CONTIG C12400619 273 unaligned CONTIG C12400231 270 unaligned CONTIG C12400691 273 unaligned CONTIG C12400651 273 unaligned CONTIG C12400685 273 unaligned CONTIG C12400721 273 unaligned CONTIG C12400653 273 unaligned CONTIG C12400683 273 unaligned CONTIG C12400889 274 unaligned CONTIG C12400745 273 unaligned CONTIG C12400781 274 unaligned CONTIG C12400849 274 unaligned CONTIG C12400905 274 unaligned CONTIG C12400887 274 unaligned CONTIG C12400945 274 unaligned CONTIG C12401083 275 unaligned CONTIG C12400961 275 unaligned CONTIG C12401305 276 unaligned CONTIG C12401105 275 unaligned CONTIG C12401235 276 unaligned CONTIG C12401149 276 unaligned CONTIG C12401375 277 unaligned CONTIG C12401331 277 unaligned CONTIG C12401351 277 unaligned CONTIG C12401523 278 unaligned CONTIG C12401515 278 unaligned CONTIG C12401415 277 unaligned CONTIG C12401525 278 unaligned CONTIG C12401513 278 unaligned CONTIG C12401529 278 unaligned CONTIG C12401623 278 unaligned CONTIG C12401627 278 unaligned CONTIG C12401647 278 unaligned CONTIG C12401701 279 unaligned CONTIG C12401857 280 unaligned CONTIG C12401589 278 unaligned CONTIG C12401927 280 unaligned CONTIG C12401945 280 unaligned CONTIG C12401995 281 unaligned CONTIG C12401931 280 unaligned CONTIG C12402023 281 unaligned CONTIG C12402037 281 unaligned CONTIG C12402101 281 unaligned CONTIG C12402073 281 unaligned CONTIG C12402093 281 unaligned CONTIG C12402503 283 unaligned CONTIG C12402141 282 unaligned CONTIG C12402573 284 unaligned CONTIG C12402587 284 unaligned CONTIG C12402631 284 unaligned CONTIG C12402601 284 unaligned CONTIG C12402633 284 unaligned CONTIG C12402649 284 unaligned CONTIG C12402647 284 unaligned CONTIG C12402681 284 unaligned CONTIG C12402723 284 unaligned CONTIG C12402741 285 unaligned CONTIG C12402689 284 unaligned CONTIG C12402793 285 unaligned CONTIG C12402779 285 unaligned CONTIG C12402843 285 unaligned CONTIG C12402797 285 unaligned CONTIG C12402911 286 unaligned CONTIG C12402895 286 unaligned CONTIG C12403161 287 unaligned CONTIG C12403171 287 unaligned CONTIG C12403159 287 unaligned CONTIG C12403129 287 unaligned CONTIG C12403233 288 unaligned CONTIG C12403173 287 unaligned CONTIG C12403323 288 unaligned CONTIG C12403445 289 unaligned CONTIG C12403229 288 unaligned CONTIG C12403453 289 unaligned CONTIG C12403563 290 unaligned CONTIG C12403679 291 unaligned CONTIG C12403691 291 unaligned CONTIG C12403657 290 unaligned CONTIG C12403695 291 unaligned CONTIG C12403727 291 unaligned CONTIG C12403801 291 unaligned CONTIG C12403707 291 unaligned CONTIG C12403873 292 unaligned CONTIG C12403949 292 unaligned CONTIG C12403835 292 unaligned CONTIG C12403987 292 unaligned CONTIG C12403983 292 unaligned CONTIG C12404035 293 unaligned CONTIG C12404025 293 unaligned CONTIG C12404083 293 unaligned CONTIG C12404127 293 unaligned CONTIG C12404229 294 unaligned CONTIG C12404239 294 unaligned CONTIG C12395237 246 unaligned CONTIG C12404283 294 unaligned CONTIG C12404299 294 unaligned CONTIG C12404341 294 unaligned CONTIG C12404295 294 unaligned CONTIG C12404389 295 unaligned CONTIG C12404417 295 unaligned CONTIG C12404431 295 unaligned CONTIG C12404441 295 unaligned CONTIG C12404489 296 unaligned CONTIG C12404427 295 unaligned CONTIG C12404723 297 unaligned CONTIG C12404535 296 unaligned CONTIG C12395367 247 unaligned CONTIG C12404551 296 unaligned CONTIG C12404819 298 unaligned CONTIG C12404763 297 unaligned CONTIG C12404835 298 unaligned CONTIG C12404847 298 unaligned CONTIG C12404825 298 unaligned CONTIG C12404919 299 unaligned CONTIG C12404769 297 unaligned CONTIG C12404965 299 unaligned CONTIG C12399947 269 unaligned CONTIG C12405077 299 unaligned CONTIG C12405117 300 unaligned CONTIG C12405029 299 unaligned CONTIG C12405091 299 unaligned CONTIG C12405141 300 unaligned CONTIG C12401567 278 unaligned CONTIG C12405223 300 unaligned CONTIG C12405171 300 unaligned CONTIG C12404935 299 unaligned CONTIG C12405265 301 unaligned CONTIG C12405391 302 unaligned CONTIG C12405249 301 unaligned CONTIG C12405253 301 unaligned CONTIG C12405481 302 unaligned CONTIG C12405351 301 unaligned CONTIG C12405281 301 unaligned CONTIG C12405479 302 unaligned CONTIG C12405537 303 unaligned CONTIG C12405781 304 unaligned CONTIG C12405519 302 unaligned CONTIG C12405599 303 unaligned CONTIG C12405795 304 unaligned CONTIG C12405989 306 unaligned CONTIG C12405933 305 unaligned CONTIG C12405845 305 unaligned CONTIG C12405939 305 unaligned CONTIG C12405769 304 unaligned CONTIG C12405975 306 unaligned CONTIG C12406319 308 unaligned CONTIG C12406115 306 unaligned CONTIG C12406041 306 unaligned CONTIG C12406403 309 unaligned CONTIG C12406577 310 unaligned CONTIG C12406491 309 unaligned CONTIG C12405993 306 unaligned CONTIG C12406723 311 unaligned CONTIG C12406559 310 unaligned CONTIG C12406761 311 unaligned CONTIG C12406797 311 unaligned CONTIG C12406983 313 unaligned CONTIG C12407043 313 unaligned CONTIG C12407057 313 unaligned CONTIG C12406647 310 unaligned CONTIG C12407061 313 unaligned CONTIG C12407069 313 unaligned CONTIG C12406333 308 unaligned CONTIG C12406769 311 unaligned CONTIG C12407185 314 unaligned CONTIG C12407159 314 unaligned CONTIG C12407209 314 unaligned CONTIG C12407083 313 unaligned CONTIG C12407177 314 unaligned CONTIG C12406189 307 unaligned CONTIG C12407333 315 unaligned CONTIG C12407201 314 unaligned CONTIG C12407309 315 unaligned CONTIG C12407353 315 unaligned CONTIG C12407315 315 unaligned CONTIG C12407395 316 unaligned CONTIG C12407459 316 unaligned CONTIG C12407427 316 unaligned CONTIG C12407369 315 unaligned CONTIG C12407393 316 unaligned CONTIG C12407475 316 unaligned CONTIG C12407539 316 unaligned CONTIG C12407583 317 unaligned CONTIG C12407575 317 unaligned CONTIG C12407571 317 unaligned CONTIG C12407619 317 unaligned CONTIG C12407677 317 unaligned CONTIG C12407659 317 unaligned CONTIG C12407685 318 unaligned CONTIG C12407643 317 unaligned CONTIG C12407977 320 unaligned CONTIG C12407831 319 unaligned CONTIG C12407749 318 unaligned CONTIG C12407999 320 unaligned CONTIG C12408003 320 unaligned CONTIG C12408045 321 unaligned CONTIG C12408049 321 unaligned CONTIG C12408287 323 unaligned CONTIG C12408301 323 unaligned CONTIG C12408319 323 unaligned CONTIG C12408333 323 unaligned CONTIG C12408337 323 unaligned CONTIG C12407455 316 unaligned CONTIG C12407989 320 unaligned CONTIG C12408367 323 unaligned CONTIG C12408355 323 unaligned CONTIG C12401583 278 unaligned CONTIG C12408391 323 unaligned CONTIG C12407485 316 unaligned CONTIG C12403665 290 unaligned CONTIG C12408431 324 unaligned CONTIG C12408555 324 unaligned CONTIG C12408199 322 unaligned CONTIG C12408495 324 unaligned CONTIG C12408797 326 unaligned CONTIG C12408863 327 unaligned CONTIG C12408859 327 unaligned CONTIG C12408601 325 unaligned CONTIG C12408389 323 unaligned CONTIG C12408885 327 unaligned CONTIG C12408469 324 unaligned CONTIG C12409079 329 unaligned CONTIG C12409069 328 unaligned CONTIG C12407317 315 unaligned CONTIG C12409105 329 unaligned CONTIG C12409215 330 unaligned CONTIG C12409209 330 unaligned CONTIG C12409107 329 unaligned CONTIG C12409187 329 unaligned CONTIG C12409351 331 unaligned CONTIG C12409379 331 unaligned CONTIG C12409483 332 unaligned CONTIG C12409323 331 unaligned CONTIG C12409399 331 unaligned CONTIG C12409325 331 unaligned CONTIG C12409109 329 unaligned CONTIG C12409249 330 unaligned CONTIG C12409493 332 unaligned CONTIG C12409507 332 unaligned CONTIG C12408407 323 unaligned CONTIG C12409197 330 unaligned CONTIG C12409705 334 unaligned CONTIG C12409491 332 unaligned CONTIG C12409693 334 unaligned CONTIG C12409729 334 unaligned CONTIG C12409817 335 unaligned CONTIG C12409787 335 unaligned CONTIG C12409703 334 unaligned CONTIG C12409591 333 unaligned CONTIG C12409887 336 unaligned CONTIG C12410089 338 unaligned CONTIG C12410137 338 unaligned CONTIG C12409669 334 unaligned CONTIG C12409923 336 unaligned CONTIG C12410021 337 unaligned CONTIG C12410223 339 unaligned CONTIG C12410075 337 unaligned CONTIG C12410269 339 unaligned CONTIG C12410251 339 unaligned CONTIG C12410001 337 unaligned CONTIG C12410057 337 unaligned CONTIG C12410361 340 unaligned CONTIG C12410431 341 unaligned CONTIG C12410387 340 unaligned CONTIG C12410367 340 unaligned CONTIG C12410467 341 unaligned CONTIG C12410221 339 unaligned CONTIG C12410463 341 unaligned CONTIG C12410395 340 unaligned CONTIG C12410401 341 unaligned CONTIG C12410481 341 unaligned CONTIG C12410609 342 unaligned CONTIG C12410597 342 unaligned CONTIG C12410469 341 unaligned CONTIG C12410647 342 unaligned CONTIG C12410495 341 unaligned CONTIG C12410675 343 unaligned CONTIG C12410637 342 unaligned CONTIG C12410259 339 unaligned CONTIG C12410657 342 unaligned CONTIG C12410719 343 unaligned CONTIG C12410793 344 unaligned CONTIG C12410839 344 unaligned CONTIG C12410853 344 unaligned CONTIG C12410897 345 unaligned CONTIG C12410455 341 unaligned CONTIG C12410941 345 unaligned CONTIG C12410865 344 unaligned CONTIG C12411063 346 unaligned CONTIG C12410975 345 unaligned CONTIG C12410557 342 unaligned CONTIG C12411059 346 unaligned CONTIG C12411101 346 unaligned CONTIG C12410505 341 unaligned CONTIG C12410677 343 unaligned CONTIG C12411119 346 unaligned CONTIG C12411197 347 unaligned CONTIG C12411385 349 unaligned CONTIG C12411329 348 unaligned CONTIG C12411431 349 unaligned CONTIG C12411429 349 unaligned CONTIG C12411409 349 unaligned CONTIG C12411483 350 unaligned CONTIG C12411615 351 unaligned CONTIG C12411677 352 unaligned CONTIG C12411157 347 unaligned CONTIG C12411291 348 unaligned CONTIG C12411709 352 unaligned CONTIG C12411811 353 unaligned CONTIG C12411823 353 unaligned CONTIG C12411559 351 unaligned CONTIG C12411479 350 unaligned CONTIG C12411857 353 unaligned CONTIG C12411833 353 unaligned CONTIG C12411939 354 unaligned CONTIG C12412025 355 unaligned CONTIG C12412117 356 unaligned CONTIG C12412103 356 unaligned CONTIG C12412375 358 unaligned CONTIG C12412347 358 unaligned CONTIG C12411111 346 unaligned CONTIG C12411747 353 unaligned CONTIG C12412379 358 unaligned CONTIG C12412441 359 unaligned CONTIG C12412629 361 unaligned CONTIG C12412231 357 unaligned CONTIG C12412639 361 unaligned CONTIG C12412613 361 unaligned CONTIG C12412673 362 unaligned CONTIG C12412405 359 unaligned CONTIG C12412791 363 unaligned CONTIG C12411117 346 unaligned CONTIG C12411741 353 unaligned CONTIG C12412739 362 unaligned CONTIG C12412797 363 unaligned CONTIG C12412811 363 unaligned CONTIG C12412889 364 unaligned CONTIG C12412877 364 unaligned CONTIG C12412803 363 unaligned CONTIG C12412721 362 unaligned CONTIG C12412857 364 unaligned CONTIG C12412971 365 unaligned CONTIG C12412953 365 unaligned CONTIG C12412903 364 unaligned CONTIG C12412991 365 unaligned CONTIG C12413169 367 unaligned CONTIG C12413239 368 unaligned CONTIG C12412967 365 unaligned CONTIG C12413255 368 unaligned CONTIG C12413051 366 unaligned CONTIG C12412939 365 unaligned CONTIG C12412319 358 unaligned CONTIG C12413365 370 unaligned CONTIG C12413535 373 unaligned CONTIG C12412947 365 unaligned CONTIG C12413485 372 unaligned CONTIG C12413613 373 unaligned CONTIG C12413697 375 unaligned CONTIG C12413737 375 unaligned CONTIG C12413763 375 unaligned CONTIG C12413391 371 unaligned CONTIG C12413471 372 unaligned CONTIG C12413809 376 unaligned CONTIG C12413959 378 unaligned CONTIG C12413923 377 unaligned CONTIG C12414069 379 unaligned CONTIG C12414147 380 unaligned CONTIG C12413609 373 unaligned CONTIG C12413695 375 unaligned CONTIG C12414185 381 unaligned CONTIG C12414231 381 unaligned CONTIG C12414333 383 unaligned CONTIG C12414201 381 unaligned CONTIG C12414405 383 unaligned CONTIG C12414439 384 unaligned CONTIG C12413987 378 unaligned CONTIG C12414497 384 unaligned CONTIG C12414083 379 unaligned CONTIG C12414623 386 unaligned CONTIG C12414617 386 unaligned CONTIG C12414215 381 unaligned CONTIG C12414459 384 unaligned CONTIG C12413999 378 unaligned CONTIG C12414727 388 unaligned CONTIG C12414643 386 unaligned CONTIG C12414671 387 unaligned CONTIG C12414741 388 unaligned CONTIG C12414781 389 unaligned CONTIG C12412839 363 unaligned CONTIG C12414805 389 unaligned CONTIG C12414465 384 unaligned CONTIG C12414819 389 unaligned CONTIG C12414767 388 unaligned CONTIG C12414703 387 unaligned CONTIG C12414859 389 unaligned CONTIG C12415203 394 unaligned CONTIG C12414985 391 unaligned CONTIG C12415093 393 unaligned CONTIG C12415087 392 unaligned CONTIG C12415225 394 unaligned CONTIG C12415313 396 unaligned CONTIG C12414895 390 unaligned CONTIG C12414991 391 unaligned CONTIG C12414887 390 unaligned CONTIG C12414917 390 unaligned CONTIG C12415387 396 unaligned CONTIG C12415509 398 unaligned CONTIG C12415319 396 unaligned CONTIG C12415607 399 unaligned CONTIG C12415641 400 unaligned CONTIG C12415471 398 unaligned CONTIG C12415673 400 unaligned CONTIG C12415213 394 unaligned CONTIG C12415791 402 unaligned CONTIG C12415335 396 unaligned CONTIG C12415351 396 unaligned CONTIG C12415717 401 unaligned CONTIG C12415205 394 unaligned CONTIG C12415809 403 unaligned CONTIG C12415909 404 unaligned CONTIG C12415917 404 unaligned CONTIG C12416109 406 unaligned CONTIG C12416195 407 unaligned CONTIG C12415815 403 unaligned CONTIG C12415929 404 unaligned CONTIG C12416407 410 unaligned CONTIG C12416135 407 unaligned CONTIG C12416447 411 unaligned CONTIG C12416343 409 unaligned CONTIG C12416507 412 unaligned CONTIG C12416021 405 unaligned CONTIG C12416111 406 unaligned CONTIG C12415845 403 unaligned CONTIG C12416605 413 unaligned CONTIG C12416601 413 unaligned CONTIG C12416733 415 unaligned CONTIG C12416773 416 unaligned CONTIG C12416609 413 unaligned CONTIG C12416829 417 unaligned CONTIG C12416933 418 unaligned CONTIG C12416283 408 unaligned CONTIG C12416809 416 unaligned CONTIG C12416263 408 unaligned CONTIG C12417067 420 unaligned CONTIG C12416781 416 unaligned CONTIG C12417045 420 unaligned CONTIG C12417161 422 unaligned CONTIG C12417171 422 unaligned CONTIG C12417257 423 unaligned CONTIG C12417255 423 unaligned CONTIG C12417205 423 unaligned CONTIG C12417261 423 unaligned CONTIG C12417263 423 unaligned CONTIG C12417487 427 unaligned CONTIG C12417415 426 unaligned CONTIG C12417273 424 unaligned CONTIG C12417523 427 unaligned CONTIG C12417515 427 unaligned CONTIG C12416907 418 unaligned CONTIG C12417659 430 unaligned CONTIG C12417605 429 unaligned CONTIG C12417527 427 unaligned CONTIG C12417625 429 unaligned CONTIG C12417761 431 unaligned CONTIG C12417813 432 unaligned CONTIG C12418039 435 unaligned CONTIG C12417837 432 unaligned CONTIG C12418163 438 unaligned CONTIG C12418009 435 unaligned CONTIG C12418209 439 unaligned CONTIG C12418037 435 unaligned CONTIG C12418309 441 unaligned CONTIG C12418313 441 unaligned CONTIG C12418317 441 unaligned CONTIG C12418585 445 unaligned CONTIG C12418569 445 unaligned CONTIG C12419075 454 unaligned CONTIG C12418611 446 unaligned CONTIG C12418807 449 unaligned CONTIG C12419043 454 unaligned CONTIG C12419137 455 unaligned CONTIG C12417013 420 unaligned CONTIG C12416719 415 unaligned CONTIG C12419213 457 unaligned CONTIG C12419279 458 unaligned CONTIG C12416789 416 unaligned CONTIG C12419287 458 unaligned CONTIG C12419159 456 unaligned CONTIG C12419261 457 unaligned CONTIG C12419193 456 unaligned CONTIG C12419127 455 unaligned CONTIG C12419423 460 unaligned CONTIG C12419407 460 unaligned CONTIG C12419503 461 unaligned CONTIG C12419493 461 unaligned CONTIG C12419289 458 unaligned CONTIG C12419547 462 unaligned CONTIG C12419581 463 unaligned CONTIG C12419521 462 unaligned CONTIG C12419329 459 unaligned CONTIG C12419591 463 unaligned CONTIG C12419467 461 unaligned CONTIG C12419563 462 unaligned CONTIG C12419685 465 unaligned CONTIG C12419731 465 unaligned CONTIG C12420011 470 unaligned CONTIG C12420069 471 unaligned CONTIG C12420075 472 unaligned CONTIG C12419913 468 unaligned CONTIG C12420111 472 unaligned CONTIG C12419867 467 unaligned CONTIG C12420325 476 unaligned CONTIG C12419637 464 unaligned CONTIG C12420205 474 unaligned CONTIG C12420531 481 unaligned CONTIG C12420323 476 unaligned CONTIG C12420237 474 unaligned CONTIG C12420551 481 unaligned CONTIG C12420555 481 unaligned CONTIG C12420645 483 unaligned CONTIG C12420553 481 unaligned CONTIG C12420765 486 unaligned CONTIG C12420253 475 unaligned CONTIG C12420197 474 unaligned CONTIG C12420991 490 unaligned CONTIG C12420751 485 unaligned CONTIG C12421485 501 unaligned CONTIG C12421155 494 unaligned 6346630 6347132 1 503 CM091768.1 C12421563 100.0 True CONTIG C12421563 503 correct CONTIG C12420901 489 unaligned CONTIG C12421137 494 unaligned CONTIG C12421029 491 unaligned 15823923 15824422 1 500 CM091752.1 C12421451 100.0 True CONTIG C12421451 500 correct CONTIG C12421327 497 unaligned CONTIG C12421387 499 unaligned 15493506 15494013 1 508 CM091752.1 C12421807 100.0 True CONTIG C12421807 508 correct 1974098 1974608 1 511 CM091764.1 C12421953 99.61 True CONTIG C12421953 511 correct CONTIG C12421747 507 unaligned 3776744 3777248 1 505 CM091768.1 C12421653 99.8 True CONTIG C12421653 505 correct CONTIG C12421693 506 unaligned 1909005 1909515 509 1 CM091764.1 C12421851 98.63 True CONTIG C12421851 509 correct 7494178 7494681 504 1 CM091758.1 C12421599 99.6 True CONTIG C12421599 504 correct 16582481 16582992 512 1 CM091753.1 C12421975 99.8 True CONTIG C12421975 512 correct CONTIG C12422077 514 unaligned 6456736 6457250 1 515 CM091768.1 C12422089 100.0 True CONTIG C12422089 515 correct 3764947 3765459 513 1 CM091768.1 C12422037 100.0 True CONTIG C12422037 513 correct 16993591 16994103 1 513 CM091752.1 C12422029 99.81 True CONTIG C12422029 513 correct 3783930 3784442 1 513 CM091752.1 C12422039 99.61 True CONTIG C12422039 513 correct 4328901 4329415 515 1 CM091768.1 C12422091 100.0 True CONTIG C12422091 515 correct 1973413 1973928 516 1 CM091764.1 C12422191 98.84 True CONTIG C12422191 516 correct 1088377 1088892 1 516 CM091754.1 C12422195 99.81 True CONTIG C12422195 516 correct 5665159 5665676 518 1 CM091768.1 C12422287 100.0 True CONTIG C12422287 518 correct 15326489 15327006 1 517 CM091752.1 C12422265 99.61 True CONTIG C12422265 517 correct 4249700 4250215 1 516 CM091768.1 C12422139 99.81 True CONTIG C12422139 516 correct 5019096 5019608 513 1 CM091768.1 C12422035 100.0 True CONTIG C12422035 513 correct 10221524 10222042 1 519 CM091765.1 C12422319 100.0 True CONTIG C12422319 519 correct 12926741 12927266 1 526 CM091754.1 C12422635 99.24 True CONTIG C12422635 526 correct 6340921 6341445 525 1 CM091768.1 C12422591 99.81 True CONTIG C12422591 525 correct 15933803 15934328 1 526 CM091757.1 C12422649 100.0 True CONTIG C12422649 526 correct 19946381 19946885 523 1 CM091751.1 C12422501 95.79 True CONTIG C12422501 523 correct 388740 389270 532 1 CM091752.1 C12422943 99.06 True CONTIG C12422943 532 correct 4188995 4189529 1 535 CM091768.1 C12423033 99.81 True CONTIG C12423033 535 correct 1877589 1878130 1 542 CM091764.1 C12423309 99.82 True CONTIG C12423309 542 correct 7282280 7282814 538 1 CM091767.1 C12423155 99.44 True CONTIG C12423155 538 correct 3628060 3628597 538 1 CM091768.1 C12423157 99.81 True CONTIG C12423157 538 correct 5350343 5350885 1 543 CM091754.1 C12423351 100.0 True CONTIG C12423351 543 correct 1942332 1942874 1 543 CM091764.1 C12423329 99.26 True CONTIG C12423329 543 correct CONTIG C12423659 551 unaligned 3973020 3973567 1 548 CM091767.1 C12423553 99.82 True CONTIG C12423553 548 correct 1212732 1213279 548 1 CM091752.1 C12423547 98.91 True CONTIG C12423547 548 correct 5251769 5252317 1 549 CM091760.1 C12423599 99.82 True CONTIG C12423599 549 correct 15828687 15829238 1 552 CM091752.1 C12423719 99.64 True CONTIG C12423719 552 correct 15486016 15486576 561 1 CM091752.1 C12424111 99.82 True CONTIG C12424111 561 correct 12625716 12626270 555 1 CM091759.1 C12423879 100.0 True CONTIG C12423879 555 correct 10284247 10284791 545 1 CM091765.1 C12424219 99.82 True CONTIG C12424219 564 correct 7222916 7223475 560 1 CM091758.1 C12424071 99.82 True CONTIG C12424071 560 correct CONTIG C12424013 558 unaligned 4357637 4358192 1 557 CM091768.1 C12423963 99.82 True CONTIG C12423963 557 correct 3302840 3303403 1 564 CM091768.1 C12424237 99.65 True CONTIG C12424237 564 correct 9145805 9146377 573 1 CM091763.1 C12424593 100.0 True CONTIG C12424593 573 correct 12300770 12301338 1 569 CM091754.1 C12424395 99.82 True CONTIG C12424395 569 correct 3831344 3831902 1 559 CM091768.1 C12424023 99.11 True CONTIG C12424023 559 correct 9267052 9267632 582 1 CM091767.1 C12424927 99.31 True CONTIG C12424927 582 correct 4346140 4346704 565 1 CM091768.1 C12424239 100.0 True CONTIG C12424239 565 correct 12935278 12935854 577 1 CM091753.1 C12424747 99.48 True CONTIG C12424747 577 correct 3135656 3136225 1 570 CM091752.1 C12424469 100.0 True CONTIG C12424469 570 correct 1818024 1818601 1 578 CM091753.1 C12424807 100.0 True CONTIG C12424807 578 correct 9245436 9246025 1 590 CM091767.1 C12425169 100.0 True CONTIG C12425169 590 correct 852093 852675 583 1 CM091763.1 C12424979 100.0 True CONTIG C12424979 583 correct 16162684 16163265 1 582 CM091753.1 C12424955 98.8 True CONTIG C12424955 582 correct 4126554 4127135 1 582 CM091764.1 C12424931 100.0 True CONTIG C12424931 582 correct 9352033 9352606 1 574 CM091752.1 C12424637 100.0 True CONTIG C12424637 574 correct 3735607 3736175 569 1 CM091768.1 C12424419 100.0 True CONTIG C12424419 569 correct 12626289 12626886 598 1 CM091759.1 C12425437 100.0 True CONTIG C12425437 598 correct 11061329 11061918 1 590 CM091766.1 C12425173 99.83 True CONTIG C12425173 590 correct 11209437 11210031 595 1 CM091765.1 C12425347 100.0 True CONTIG C12425347 595 correct 15325362 15325969 1 608 CM091754.1 C12425837 99.51 True CONTIG C12425837 608 correct 5533307 5533900 1 594 CM091754.1 C12425299 99.66 True CONTIG C12425299 594 correct 18914888 18915486 1 599 CM091751.1 C12425523 99.33 True CONTIG C12425523 599 correct 4773161 4773772 612 1 CM091767.1 C12425973 99.67 True CONTIG C12425973 612 correct CONTIG C12425943 611 unaligned 3320389 3321006 618 1 CM091753.1 C12426167 99.84 True CONTIG C12426167 618 correct 1071465 1072085 621 1 CM091754.1 C12426241 99.84 True CONTIG C12426241 621 correct 5557087 5557695 1 609 CM091754.1 C12425881 99.67 True CONTIG C12425881 609 correct 14258986 14259602 624 8 CM091758.1 C12426387 99.84 True CONTIG C12426387 624 correct 1980613 1981219 607 1 CM091764.1 C12425797 99.84 True CONTIG C12425797 607 correct 5388276 5388896 621 1 CM091764.1 C12426257 99.84 True CONTIG C12426257 621 correct 4451367 4451958 592 1 CM091754.1 C12425259 99.32 True CONTIG C12425259 592 correct 15497176 15497802 627 1 CM091752.1 C12426471 100.0 True CONTIG C12426471 627 correct 1927284 1927909 1 626 CM091764.1 C12426439 99.2 True CONTIG C12426439 626 correct CONTIG C12426459 627 unaligned 4342251 4342865 632 18 CM091768.1 C12426659 100.0 True CONTIG C12426659 632 correct 16184701 16185332 1 631 CM091753.1 C12426595 99.53 True CONTIG C12426595 631 correct 5257882 5258518 637 1 CM091760.1 C12426829 99.84 True CONTIG C12426829 637 correct 4462385 4463009 625 1 CM091754.1 C12426417 99.84 True CONTIG C12426417 625 correct 5255276 5255920 646 1 CM091768.1 C12427131 99.85 True CONTIG C12427131 646 correct 10691500 10692135 1 636 CM091766.1 C12426763 99.69 True CONTIG C12426763 636 correct 1961608 1962255 648 1 CM091764.1 C12427201 99.38 True CONTIG C12427201 648 correct 4366905 4367559 655 1 CM091768.1 C12427429 99.85 True CONTIG C12427429 655 correct 3520073 3520728 656 1 CM091751.1 C12427497 99.85 True CONTIG C12427497 656 correct 6418746 6419394 649 1 CM091763.1 C12427245 99.08 True CONTIG C12427245 649 correct 9193831 9194491 1 661 CM091763.1 C12427637 99.7 True CONTIG C12427637 661 correct 1697303 1697968 1 666 CM091765.1 C12427793 100.0 True CONTIG C12427793 666 correct 2463958 2464620 1 662 CM091753.1 C12427669 99.85 True CONTIG C12427669 662 correct 3680014 3680610 597 1 CM091768.1 C12425433 100.0 True CONTIG C12425433 597 correct 15472519 15473175 657 1 CM091752.1 C12427507 100.0 True CONTIG C12427507 657 correct CONTIG C12427875 669 unaligned 9872592 9873259 667 1 CM091755.1 C12427837 98.51 True CONTIG C12427837 667 correct 13718505 13719176 1 674 CM091755.1 C12428037 99.26 True CONTIG C12428037 674 correct 15812686 15813345 1 660 CM091752.1 C12427595 100.0 True CONTIG C12427595 660 correct 12892799 12893466 1 668 CM091754.1 C12427843 99.7 True CONTIG C12427843 668 correct 15488354 15489005 1 652 CM091752.1 C12427363 100.0 True CONTIG C12427363 652 correct 88886 89552 666 1 CM091752.1 C12427801 99.55 True CONTIG C12427801 666 correct 2892538 2893211 675 1 CM091752.1 C12428097 99.85 True CONTIG C12428097 675 correct 5663987 5664661 675 1 CM091768.1 C12428111 99.85 True CONTIG C12428111 675 correct 5662200 5662878 1 679 CM091768.1 C12428229 99.56 True CONTIG C12428229 679 correct 3906354 3907042 1 689 CM091768.1 C12428555 99.85 True CONTIG C12428555 689 correct 4207053 4207739 1 687 CM091762.1 C12428479 99.27 True CONTIG C12428479 687 correct 15733139 15733832 1 694 CM091757.1 C12428717 99.57 True CONTIG C12428717 694 correct 3905679 3906358 1 680 CM091768.1 C12428295 100.0 True CONTIG C12428295 680 correct 10693053 10693732 680 1 CM091766.1 C12428303 99.12 True CONTIG C12428303 680 correct 6183474 6184159 686 1 CM091768.1 C12428441 100.0 True CONTIG C12428441 686 correct CONTIG C12428869 699 unaligned 3726196 3726891 696 1 CM091760.1 C12428777 99.57 True CONTIG C12428777 696 correct 4449557 4450256 700 1 CM091754.1 C12428917 100.0 True CONTIG C12428917 700 correct 13662514 13663206 695 1 CM091755.1 C12428749 99.42 True CONTIG C12428749 695 correct 3117739 3118441 1 703 CM091752.1 C12429019 100.0 True CONTIG C12429019 703 correct 2701815 2702514 700 1 CM091758.1 C12428915 99.29 True CONTIG C12428915 700 correct CONTIG C12429355 716 unaligned 12505473 12506014 550 1 CM091754.1 C12425057 97.82 True CONTIG C12425057 585 correct 4344979 4345684 706 1 CM091768.1 C12429095 100.0 True CONTIG C12429095 706 correct 16131399 16132116 1 718 CM091753.1 C12429421 100.0 True CONTIG C12429421 718 correct 4278850 4279555 1 706 CM091768.1 C12429103 99.43 True CONTIG C12429103 706 correct 2707951 2708659 723 15 CM091758.1 C12429543 99.86 True CONTIG C12429543 723 correct 16136878 16137600 1 723 CM091753.1 C12429563 100.0 True CONTIG C12429563 723 correct 20201060 20201786 726 1 CM091751.1 C12429675 99.31 True CONTIG C12429675 726 correct 16226985 16227708 723 1 CM091753.1 C12429689 99.03 True CONTIG C12429689 727 correct 5391228 5391980 1 753 CM091764.1 C12430433 99.73 True CONTIG C12430433 753 correct CONTIG C12430451 753 unaligned CONTIG C12429653 726 unaligned 9271563 9272325 763 1 CM091767.1 C12430731 100.0 True CONTIG C12430731 763 correct 574462 575183 722 1 CM091764.1 C12429519 99.72 True CONTIG C12429519 722 correct 4216706 4217430 1 725 CM091768.1 C12429627 99.59 True CONTIG C12429627 725 correct 3513249 3514014 1 766 CM091751.1 C12430827 99.87 True CONTIG C12430827 766 correct 3745246 3745945 700 1 CM091768.1 C12428923 100.0 True CONTIG C12428923 700 correct 4319661 4320414 754 1 CM091768.1 C12430467 99.47 True CONTIG C12430467 754 correct 4486094 4486852 1 759 CM091754.1 C12430627 99.87 True CONTIG C12430627 759 correct 13458945 13459728 784 1 CM091758.1 C12431287 99.74 True CONTIG C12431287 784 correct 1955468 1956238 772 1 CM091754.1 C12430985 99.74 True CONTIG C12430985 772 correct 4343298 4344075 778 1 CM091768.1 C12431105 100.0 True CONTIG C12431105 778 correct 1943598 1944386 789 1 CM091764.1 C12431417 99.24 True CONTIG C12431417 789 correct 4303053 4303838 1 786 CM091768.1 C12431323 99.49 True CONTIG C12431323 786 correct 6341588 6342367 780 1 CM091768.1 C12431165 99.49 True CONTIG C12431165 780 correct CONTIG C12431173 780 unaligned 8437490 8438280 791 1 CM091760.1 C12431505 99.37 True CONTIG C12431505 791 correct 3900331 3901128 1 798 CM091768.1 C12431679 100.0 True CONTIG C12431679 798 correct 5431079 5431851 1 773 CM091764.1 C12431015 100.0 True CONTIG C12431015 773 correct 6184229 6185012 1 784 CM091768.1 C12431269 99.62 True CONTIG C12431269 784 correct 15494712 15495509 1 798 CM091752.1 C12431691 99.87 True CONTIG C12431691 798 correct 3720392 3721185 794 1 CM091760.1 C12431591 99.87 True CONTIG C12431591 794 correct 17044909 17045698 1 790 CM091752.1 C12431485 100.0 True CONTIG C12431485 790 correct 9157052 9157859 808 1 CM091767.1 C12431937 100.0 True CONTIG C12431937 808 correct 9469058 9469859 802 1 CM091767.1 C12431803 100.0 True CONTIG C12431803 802 correct 3884173 3884988 1 816 CM091768.1 C12432153 100.0 True CONTIG C12432153 816 correct 8215079 8215878 1 800 CM091767.1 C12431741 99.75 True CONTIG C12431741 800 correct 4963423 4964222 800 1 CM091768.1 C12431747 99.88 True CONTIG C12431747 800 correct 7680249 7681079 831 1 CM091767.1 C12432537 100.0 True CONTIG C12432537 831 correct 8671355 8672199 845 1 CM091767.1 C12432933 99.53 True CONTIG C12432933 845 correct 133507 134344 1 838 CM091764.1 C12432755 99.76 True CONTIG C12432755 838 correct 14243457 14244282 1 825 CM091754.1 C12432375 98.91 True CONTIG C12432375 825 correct 4296559 4297394 1 837 CM091768.1 C12432709 99.28 True CONTIG C12432709 837 correct 2433419 2434276 1 857 CM091768.1 C12433263 98.95 True CONTIG C12433263 857 correct 18579935 18580746 1 812 CM091751.1 C12432045 99.26 True CONTIG C12432045 812 correct 12943655 12944483 1 828 CM091753.1 C12432461 99.64 True CONTIG C12432461 828 correct 5820265 5821068 24 827 CM091767.1 C12432423 99.25 True CONTIG C12432423 827 correct 4969227 4970130 905 1 CM091767.1 C12434451 99.78 True CONTIG C12434451 905 correct 1067818 1068688 1 871 CM091754.1 C12433641 99.89 True CONTIG C12433641 871 correct 4339605 4340455 851 1 CM091768.1 C12433073 100.0 True CONTIG C12433073 851 correct 4253215 4254074 860 1 CM091768.1 C12433351 100.0 True CONTIG C12433351 860 correct 4579218 4580117 1 900 CM091768.1 C12434317 100.0 True CONTIG C12434317 900 correct 16472658 16473545 1 888 CM091752.1 C12434051 98.76 True CONTIG C12434051 888 correct 3319032 3319940 909 1 CM091753.1 C12434557 99.89 True CONTIG C12434557 909 correct 4729217 4730134 1 918 CM091768.1 C12434785 100.0 True CONTIG C12434785 918 correct 4248824 4249683 860 1 CM091768.1 C12433341 100.0 True CONTIG C12433341 860 correct CONTIG C12435481 946 unaligned 3624482 3625411 1 930 CM091768.1 C12435135 99.68 True CONTIG C12435135 930 correct CONTIG C12434591 910 unaligned 1165294 1166234 1 941 CM091753.1 C12435393 99.57 True CONTIG C12435393 941 correct 4580090 4581028 939 1 CM091768.1 C12435327 100.0 True CONTIG C12435327 939 correct 4853856 4854655 164 963 CM091751.1 C12435981 99.88 True CONTIG C12435981 963 correct 313496 314451 956 1 CM091764.1 C12435779 100.0 True CONTIG C12435779 956 correct 16596748 16597694 1 947 CM091752.1 C12435507 100.0 True CONTIG C12435507 947 correct 4717169 4718115 1 947 CM091763.1 C12435523 99.89 True CONTIG C12435523 947 correct 9906965 9907916 1 952 CM091756.1 C12435651 99.89 True CONTIG C12435651 952 correct 814370 815324 955 1 CM091753.1 C12435745 100.0 True CONTIG C12435745 955 correct 1945892 1946894 1 1005 CM091754.1 C12436925 99.4 True CONTIG C12436925 1005 correct 1921833 1922908 1076 1 CM091764.1 C12438583 99.63 True CONTIG C12438583 1076 correct 11016624 11017636 78 1092 CM091756.1 C12438891 99.7 True CONTIG C12438891 1092 correct 214959 216023 1091 1 CM091752.1 C12438877 96.07 True CONTIG C12438877 1091 correct 491391 492360 1 970 CM091764.1 C12436141 99.79 True CONTIG C12436141 970 correct 12945622 12946586 1 965 CM091753.1 C12436039 99.38 True CONTIG C12436039 965 correct 390439 391617 1179 1 CM091752.1 C12440731 98.9 True CONTIG C12440731 1179 correct 4003143 4004295 1162 7 CM091757.1 C12440393 99.39 True CONTIG C12440393 1162 correct 1947619 1948800 1 1182 CM091755.1 C12440777 99.92 True CONTIG C12440777 1182 correct 2107018 2108121 1 1113 CM091767.1 C12439363 99.1 True CONTIG C12439363 1113 correct 5064200 5065426 1227 1 CM091768.1 C12441663 100.0 True CONTIG C12441663 1227 correct CONTIG C12440829 1186 unaligned 3893502 3894746 1246 1 CM091768.1 C12441991 99.6 True CONTIG C12441991 1246 correct 6941512 6942717 1 1206 CM091767.1 C12441267 99.75 True CONTIG C12441267 1206 correct 9376925 9377513 19 610 CM091758.1 C12425887 99.32 True CONTIG C12425887 610 correct 1950927 1952108 1 1184 CM091754.1 C12440803 99.41 True CONTIG C12440803 1184 correct 5721380 5722697 1 1318 CM091754.1 C12443331 99.77 True CONTIG C12443331 1318 correct 1954217 1955514 1 1296 CM091754.1 C12442899 99.38 True CONTIG C12442899 1296 correct 16764023 16765268 1246 1 CM091756.1 C12441995 99.68 True CONTIG C12441995 1246 correct 5333795 5335133 1 1339 CM091754.1 C12443699 100.0 True CONTIG C12443699 1339 correct CONTIG C12444707 1396 unaligned 19549487 19550967 1483 1 CM091751.1 C12446209 99.06 True CONTIG C12446209 1483 correct CONTIG C12441197 1203 unaligned 6795369 6796765 1397 1 CM091767.1 C12444729 99.79 True CONTIG C12444729 1397 correct 2038371 2039701 1332 1 CM091757.1 C12443567 99.47 True CONTIG C12443567 1332 correct CONTIG C12446685 1513 unaligned 19954122 19955597 1 1476 CM091751.1 C12446095 99.53 True CONTIG C12446095 1476 correct CONTIG C12446889 1525 unaligned 4769418 4770963 1 1546 CM091754.1 C12447229 99.94 True CONTIG C12447229 1546 correct 8146519 8148053 1535 1 CM091767.1 C12447043 99.8 True CONTIG C12447043 1535 correct 1836989 1838667 1 1683 CM091768.1 C12449497 98.58 True CONTIG C12449497 1683 correct 256145 257495 1 1351 CM091763.1 C12444243 100.0 True CONTIG C12444243 1369 correct 7230524 7232352 1829 1 CM091758.1 C12451655 99.78 True CONTIG C12451655 1829 correct 5845120 5846859 1742 1 CM091763.1 C12450323 99.31 True CONTIG C12450323 1742 correct 18551730 18553198 252 1720 CM091751.1 C12450241 99.18 True CONTIG C12450241 1735 correct 4413112 4414672 1 1561 CM091768.1 C12447503 99.87 True CONTIG C12447503 1561 correct 6920975 6922682 5 1712 CM091764.1 C12449933 99.36 True CONTIG C12449933 1712 correct 16134717 16136672 1 1959 CM091753.1 C12453537 99.23 True CONTIG C12453537 1959 correct 9527606 9529508 1 1907 CM091764.1 C12452805 99.21 True CONTIG C12452805 1907 correct CONTIG C12452047 1855 unaligned 225315 227371 2058 1 CM091752.1 C12455559 99.08 True CONTIG C12455559 2114 correct 1357674 1358865 1 1192 CM091755.1 C12440957 100.0 True CONTIG C12440957 1192 correct 18578408 18579890 1483 1 CM091751.1 C12446211 99.26 True CONTIG C12446211 1483 correct 7528827 7530810 1984 1 CM091764.1 C12453913 100.0 True CONTIG C12453913 1984 correct 12633299 12635825 1 2527 CM091759.1 C12460577 99.68 True CONTIG C12460577 2527 correct 8435258 8437536 2279 1 CM091760.1 C12457659 99.21 True CONTIG C12457659 2279 correct 684011 686231 2221 1 CM091755.1 C12456895 100.0 True CONTIG C12456895 2221 correct 4715165 4717176 2012 1 CM091763.1 C12454267 99.6 True CONTIG C12454267 2012 correct 1809946 1812634 1 2698 CM091768.1 C12462699 99.19 True CONTIG C12462699 2715 correct 10940979 10944203 1 3225 CM091765.1 C12467505 99.94 True CONTIG C12467505 3225 correct 3927531 3929964 2439 1 CM091757.1 C12459567 98.85 True CONTIG C12459567 2439 correct 10650695 10654066 3372 1 CM091759.1 C12468767 99.56 True CONTIG C12468767 3372 correct 18580958 18584064 3109 1 CM091751.1 C12466417 99.23 True CONTIG C12466417 3109 correct CONTIG C12472465 3848 unaligned 272494 276355 3861 1 CM091764.1 C12472601 99.95 True CONTIG C12472601 3865 correct 19949554 19952961 1 3400 CM091751.1 C12468987 99.38 True CONTIG C12468987 3400 correct 1850728 1853551 2817 1 CM091768.1 C12463671 99.01 True CONTIG C12463671 2817 correct 3138788 3142157 1 3370 CM091752.1 C12468737 99.97 True CONTIG C12468737 3370 correct 4108469 4112536 4069 1 CM091768.1 C12474075 99.93 True CONTIG C12474075 4069 correct 3306638 3310889 1 4252 CM091760.1 C12475225 99.95 True CONTIG C12475225 4252 correct 10472873 10477219 4352 1 CM091765.1 C12475833 99.84 True CONTIG C12475833 4352 correct 5727728 5731880 4154 1 CM091754.1 C12474611 99.88 True CONTIG C12474611 4154 correct 1698153 1703989 1 5839 CM091765.1 C12483241 99.86 True CONTIG C12483241 5839 correct 1953367 1964539 11128 9 CM091757.1 C12496819 99.08 True CONTIG C12496819 11128 correct 7814307 7820398 6093 1 CM091767.1 C12484271 99.92 True CONTIG C12484271 6093 correct CONTIG C12498321 12233 unaligned 6044820 6061462 1 16629 CM091761.1 C12502257 99.6 True CONTIG C12502257 16629 correct 5750933 5753671 2758 20 CM091763.1 C12463585 99.45 True CONTIG C12463585 2806 correct 3366718 3371317 4586 1 CM091766.1 C12477185 99.41 True CONTIG C12477185 4586 correct 5771253 5777040 5799 1 CM091756.1 C12483117 99.6 True CONTIG C12483117 5809 correct 5806401 5811949 23 5614 CM091756.1 C12482283 98.64 True CONTIG C12482283 5614 correct 6025845 6044441 11 18609 CM091761.1 C12503345 99.69 True CONTIG C12503345 18609 correct CONTIG C12506841 37480 unaligned 2270406 2276438 1 6011 CM091756.1 C12483989 98.96 True CONTIG C12483989 6033 correct