S1 E1 S2 E2 Reference Contig IDY Ambiguous Best_group CONTIG scf7180000181724 304 unaligned 4230323 4230952 630 1 CM091767.1 scf7180000181725 100.0 True indel: indel (<= 5bp) 4229717 4230322 1237 632 CM091767.1 scf7180000181725 100.0 True CONTIG scf7180000181725 1868 correct 3309478 3310252 781 1 CM091753.1 scf7180000181726 99.87 True CONTIG scf7180000181726 781 correct CONTIG scf7180000181727 320 unaligned 4757634 4758545 1 911 CM091765.1 scf7180000181728 99.45 True CONTIG scf7180000181728 931 correct 1603637 1604678 1043 1 CM091763.1 scf7180000181729 99.71 True CONTIG scf7180000181729 1109 correct CONTIG scf7180000181730 327 unaligned CONTIG scf7180000181731 719 unaligned 5529676 5531423 1749 1 CM091759.1 scf7180000181732 99.94 True CONTIG scf7180000181732 1826 correct 15492557 15493140 1 585 CM091756.1 scf7180000181733 99.66 True CONTIG scf7180000181733 664 correct 10299968 10303219 3138 1 CM091762.1 scf7180000181734 95.98 True CONTIG scf7180000181734 3138 correct CONTIG scf7180000181735 370 unaligned 8818061 8819676 1 1616 CM091765.1 scf7180000181736 99.5 True CONTIG scf7180000181736 1633 correct 1099429 1101009 1 1582 CM091763.1 scf7180000181737 99.81 True translocation 13848035 13848771 1583 2319 CM091758.1 scf7180000181737 99.73 True CONTIG scf7180000181737 2321 misassembled 9834958 9838227 3277 1 CM091765.1 scf7180000181738 99.73 True CONTIG scf7180000181738 3277 correct CONTIG scf7180000181739 362 unaligned 10376665 10377653 1 987 CM091763.1 scf7180000181740 99.7 True CONTIG scf7180000181740 1202 correct 8512308 8513530 1 1223 CM091759.1 scf7180000181741 99.75 True CONTIG scf7180000181741 1307 correct 10834270 10835949 1 1678 CM091766.1 scf7180000181742 99.82 True CONTIG scf7180000181742 1678 correct 1356478 1358068 1 1591 CM091758.1 scf7180000181743 99.81 True relocation, inconsistency = 7300741 8658810 8659514 2290 1592 CM091758.1 scf7180000181743 98.63 True CONTIG scf7180000181743 2290 misassembled 10915293 10916560 1 1268 CM091757.1 scf7180000181744 99.68 True CONTIG scf7180000181744 1294 correct CONTIG scf7180000181745 241 unaligned 11751688 11752334 648 1 CM091756.1 scf7180000181746 99.07 True CONTIG scf7180000181746 691 correct 3422581 3425715 3095 1 CM091765.1 scf7180000181747 98.12 True CONTIG scf7180000181747 3095 correct 2778649 2779305 666 1 CM091763.1 scf7180000181748 98.5 True CONTIG scf7180000181748 1023 correct CONTIG scf7180000181749 323 unaligned 16491809 16493240 1432 1 CM091756.1 scf7180000181750 100.0 True CONTIG scf7180000181750 1470 correct 6757089 6758452 1363 1 CM091760.1 scf7180000181751 99.56 True CONTIG scf7180000181751 1529 correct 14566422 14567424 1003 1 CM091760.1 scf7180000181752 99.7 True CONTIG scf7180000181752 1093 correct 12032988 12035688 13 2714 CM091755.1 scf7180000181753 99.59 True CONTIG scf7180000181753 2714 correct CONTIG scf7180000181754 326 unaligned CONTIG scf7180000181755 303 unaligned CONTIG scf7180000181756 1469 unaligned 4420518 4422034 1 1518 CM091766.1 scf7180000181757 99.67 True translocation 9568902 9569416 2033 1519 CM091756.1 scf7180000181757 100.0 True CONTIG scf7180000181757 2033 misassembled 177572 179617 1 2047 CM091766.1 scf7180000181758 99.76 True CONTIG scf7180000181758 2047 correct CONTIG scf7180000181759 460 unaligned CONTIG scf7180000181760 377 unaligned CONTIG scf7180000181761 2272 unaligned 5886274 5886971 698 1 CM091753.1 scf7180000181762 99.71 True CONTIG scf7180000181762 1212 correct 3046442 3047863 1 1434 CM091767.1 scf7180000181763 98.05 True CONTIG scf7180000181763 1434 correct 168386 169046 661 1 CM091764.1 scf7180000181764 100.0 True translocation 1550775 1551386 662 1273 CM091754.1 scf7180000181764 99.53 True CONTIG scf7180000181764 1273 misassembled 12734393 12735181 1 789 CM091758.1 scf7180000181765 100.0 True CONTIG scf7180000181765 812 correct 6021713 6023447 1710 1 CM091767.1 scf7180000181766 98.27 True CONTIG scf7180000181766 1738 correct 3551648 3554398 1 2755 CM091752.1 scf7180000181767 99.56 True CONTIG scf7180000181767 2755 correct 6481697 6482297 601 1 CM091768.1 scf7180000181768 100.0 True CONTIG scf7180000181768 601 correct 10195875 10196757 883 1 CM091755.1 scf7180000181769 99.66 True CONTIG scf7180000181769 889 correct 4752259 4754861 2611 1 CM091767.1 scf7180000181770 99.58 True CONTIG scf7180000181770 2618 correct 12310461 12311892 1 1432 CM091759.1 scf7180000181771 100.0 True CONTIG scf7180000181771 1487 correct 5632523 5633993 1471 1 CM091762.1 scf7180000181773 99.66 True CONTIG scf7180000181773 1484 correct 3809119 3810639 1521 1 CM091754.1 scf7180000181774 99.93 True CONTIG scf7180000181774 1846 correct 7994377 7995385 1 1013 CM091751.1 scf7180000181775 99.21 True CONTIG scf7180000181775 1032 correct 8423127 8424699 1570 1 CM091758.1 scf7180000181776 99.24 True CONTIG scf7180000181776 1791 correct 13829940 13830575 1 636 CM091755.1 scf7180000181777 99.69 True local misassembly 13831547 13832091 1444 1988 CM091755.1 scf7180000181777 99.63 True indel: indel (<= 5bp) 13832092 13833185 1990 3083 CM091755.1 scf7180000181777 99.73 True CONTIG scf7180000181777 3083 correct 1806908 1810046 3124 1 CM091762.1 scf7180000181778 99.36 True CONTIG scf7180000181778 3124 correct 2769968 2771139 1 1163 CM091767.1 scf7180000181779 98.81 True CONTIG scf7180000181779 1454 correct 4397901 4398642 1 742 CM091755.1 scf7180000181780 99.6 True local misassembly 4399047 4400220 874 2047 CM091755.1 scf7180000181780 100.0 True CONTIG scf7180000181780 2047 correct 4454930 4455891 2737 3702 CM091754.1 scf7180000181781 97.31 True CONTIG scf7180000181781 3702 correct 4032447 4034424 1979 1 CM091764.1 scf7180000181782 99.55 True translocation 3137029 3138180 3129 1980 CM091755.1 scf7180000181782 99.75 True CONTIG scf7180000181782 3129 misassembled 13665097 13665701 626 1 CM091755.1 scf7180000181783 96.65 True CONTIG scf7180000181783 657 correct 4947856 4949029 1174 1 CM091767.1 scf7180000181784 99.91 True CONTIG scf7180000181784 1249 correct CONTIG scf7180000181785 317 unaligned 14677393 14677965 1 572 CM091760.1 scf7180000181786 99.66 True translocation 3531884 3533358 2047 573 CM091752.1 scf7180000181786 99.26 True CONTIG scf7180000181786 2047 misassembled 9737720 9739283 1 1564 CM091751.1 scf7180000181787 99.87 True CONTIG scf7180000181787 1582 correct 1360818 1362148 1 1331 CM091762.1 scf7180000181788 99.55 True translocation 8330256 8331068 1332 2135 CM091763.1 scf7180000181788 98.69 True CONTIG scf7180000181788 2135 misassembled 15028771 15029296 525 1 CM091755.1 scf7180000181789 99.62 True CONTIG scf7180000181789 575 correct 7068916 7069749 1 834 CM091763.1 scf7180000181790 99.88 True CONTIG scf7180000181790 863 correct 9128431 9129633 1 1203 CM091753.1 scf7180000181791 99.5 True CONTIG scf7180000181791 1225 correct 2070419 2072417 2002 1 CM091766.1 scf7180000181792 99.8 True CONTIG scf7180000181792 2024 correct 9111890 9113642 1774 1 CM091757.1 scf7180000181793 98.25 True CONTIG scf7180000181793 2210 correct CONTIG scf7180000181794 365 unaligned 12563279 12564939 384 2047 CM091760.1 scf7180000181795 99.28 True CONTIG scf7180000181795 2047 correct CONTIG scf7180000181796 437 unaligned 4491729 4493747 1 2018 CM091759.1 scf7180000181797 99.46 True CONTIG scf7180000181797 2020 correct 10660571 10661173 474 1076 CM091759.1 scf7180000181798 100.0 True CONTIG scf7180000181798 1076 correct 7126082 7127443 1362 1 CM091759.1 scf7180000181799 99.27 True CONTIG scf7180000181799 1362 correct CONTIG scf7180000181800 412 unaligned 15062338 15063381 1044 1 CM091757.1 scf7180000181801 100.0 True CONTIG scf7180000181801 1134 correct 3022840 3023407 11 578 CM091751.1 scf7180000181802 99.82 True CONTIG scf7180000181802 728 correct CONTIG scf7180000181803 578 unaligned 2501329 2503125 1 1808 CM091758.1 scf7180000181804 98.84 True CONTIG scf7180000181804 1825 correct 7190070 7191367 1 1299 CM091754.1 scf7180000181805 99.77 True CONTIG scf7180000181805 1352 correct CONTIG scf7180000181806 323 unaligned CONTIG scf7180000181807 329 unaligned 2252747 2253257 1 508 CM091766.1 scf7180000181808 97.08 True CONTIG scf7180000181808 581 correct 6548642 6549943 1 1303 CM091767.1 scf7180000181809 99.77 True translocation 10693264 10693798 1839 1304 CM091758.1 scf7180000181809 99.82 True CONTIG scf7180000181809 1839 misassembled CONTIG scf7180000181810 567 unaligned CONTIG scf7180000181811 485 unaligned CONTIG scf7180000181812 535 unaligned 15167018 15168268 1251 1 CM091755.1 scf7180000181813 99.68 True CONTIG scf7180000181813 1262 correct 5929310 5930493 1184 1 CM091759.1 scf7180000181814 99.49 True CONTIG scf7180000181814 1314 correct 1168490 1169613 236 1359 CM091753.1 scf7180000181815 100.0 True CONTIG scf7180000181815 1359 correct 18128560 18129707 1149 1 CM091751.1 scf7180000181816 99.56 True CONTIG scf7180000181816 1620 correct 792105 795242 3124 1 CM091767.1 scf7180000181817 99.3 True CONTIG scf7180000181817 3124 correct 15493073 15494581 1511 1 CM091755.1 scf7180000181818 99.6 True CONTIG scf7180000181818 1602 correct CONTIG scf7180000181819 305 unaligned 4260067 4261505 1 1437 CM091760.1 scf7180000181820 99.44 True translocation 11592408 11593070 2100 1438 CM091756.1 scf7180000181820 99.14 True CONTIG scf7180000181820 2100 misassembled 9076972 9078378 1407 1 CM091766.1 scf7180000181821 99.93 True CONTIG scf7180000181821 1568 correct 3660336 3661922 1 1587 CM091753.1 scf7180000181822 99.75 True translocation 1494853 1496327 3063 1588 CM091752.1 scf7180000181822 99.8 True CONTIG scf7180000181822 3063 misassembled CONTIG scf7180000181823 544 unaligned CONTIG scf7180000181824 401 unaligned 6767995 6769935 15 1956 CM091763.1 scf7180000181825 99.95 True translocation 12141166 12142267 3056 1957 CM091757.1 scf7180000181825 99.47 True CONTIG scf7180000181825 3056 misassembled 9645345 9646750 1406 1 CM091761.1 scf7180000181826 99.57 True CONTIG scf7180000181826 1420 correct CONTIG scf7180000181827 462 unaligned 7226465 7227309 1 846 CM091757.1 scf7180000181828 99.17 True CONTIG scf7180000181828 952 correct CONTIG scf7180000181829 334 unaligned 3725124 3725998 1 874 CM091760.1 scf7180000181830 99.09 True CONTIG scf7180000181830 874 correct 8552309 8554125 1 1829 CM091755.1 scf7180000181831 98.74 True CONTIG scf7180000181831 1903 correct 7085059 7086118 1061 1 CM091751.1 scf7180000181832 99.91 True CONTIG scf7180000181832 1109 correct 14350295 14357933 32 7668 CM091753.1 scf7180000181833 99.33 True CONTIG scf7180000181833 7684 correct 16759019 16760733 1717 1 CM091753.1 scf7180000181834 99.71 True translocation 6700665 6701630 1720 2685 CM091761.1 scf7180000181834 100.0 True CONTIG scf7180000181834 2685 misassembled CONTIG scf7180000181835 331 unaligned CONTIG scf7180000181836 324 unaligned CONTIG scf7180000181837 398 unaligned 1130870 1132087 1219 1 CM091751.1 scf7180000181838 99.34 True CONTIG scf7180000181838 1323 correct 12549711 12551247 1 1537 CM091754.1 scf7180000181839 99.87 True CONTIG scf7180000181839 1907 correct CONTIG scf7180000181840 445 unaligned 13279420 13280346 1 930 CM091759.1 scf7180000181841 99.57 True CONTIG scf7180000181841 1108 correct 5603967 5605013 1 1050 CM091758.1 scf7180000181842 99.44 True translocation 2227761 2229069 2358 1051 CM091762.1 scf7180000181842 99.69 True CONTIG scf7180000181842 2358 misassembled 5177093 5179211 2120 1 CM091757.1 scf7180000181843 99.86 True CONTIG scf7180000181843 2120 correct 7037108 7038032 1 927 CM091756.1 scf7180000181844 99.14 True CONTIG scf7180000181844 984 correct CONTIG scf7180000181845 347 unaligned 14057471 14059343 1874 1 CM091756.1 scf7180000181846 99.73 True CONTIG scf7180000181846 2128 correct 13276224 13279408 1 3109 CM091759.1 scf7180000181847 96.62 True CONTIG scf7180000181847 3109 correct CONTIG scf7180000181848 326 unaligned 8801892 8802879 1002 14 CM091763.1 scf7180000181849 99.6 True CONTIG scf7180000181849 1048 correct 6784082 6785018 937 1 CM091751.1 scf7180000181850 99.89 True CONTIG scf7180000181850 2047 correct_unaligned 7119009 7119503 1 500 CM091763.1 scf7180000181851 96.0 True CONTIG scf7180000181851 507 correct CONTIG scf7180000181852 304 unaligned CONTIG scf7180000181853 388 unaligned CONTIG scf7180000181854 441 unaligned CONTIG scf7180000181855 585 unaligned 9427348 9428921 1 1574 CM091766.1 scf7180000181856 99.94 True local misassembly 9429117 9430580 1575 3038 CM091766.1 scf7180000181856 99.32 True CONTIG scf7180000181856 3108 correct CONTIG scf7180000181857 637 unaligned CONTIG scf7180000181858 458 unaligned CONTIG scf7180000181859 325 unaligned 6697383 6698339 996 39 CM091767.1 scf7180000181860 99.58 True CONTIG scf7180000181860 1120 correct 13895562 13896253 692 1 CM091757.1 scf7180000181861 100.0 True CONTIG scf7180000181861 692 correct CONTIG scf7180000181862 383 unaligned CONTIG scf7180000181863 516 unaligned CONTIG scf7180000181864 1597 unaligned 10849838 10850503 1 666 CM091763.1 scf7180000181865 100.0 True CONTIG scf7180000181865 689 correct 3124891 3126406 5 1524 CM091753.1 scf7180000181866 99.47 True CONTIG scf7180000181866 1531 correct 9760119 9761518 1 1402 CM091762.1 scf7180000181867 99.64 True CONTIG scf7180000181867 1422 correct 2604636 2605822 1 1186 CM091764.1 scf7180000181868 99.83 True CONTIG scf7180000181868 1205 correct CONTIG scf7180000181869 510 unaligned 4769152 4770642 1 1491 CM091761.1 scf7180000181870 99.87 True translocation 10118734 10119865 1492 2623 CM091765.1 scf7180000181870 99.91 True CONTIG scf7180000181870 2623 misassembled 2673369 2675099 317 2047 CM091768.1 scf7180000181871 99.94 True CONTIG scf7180000181871 2047 correct 13790381 13791660 1284 1 CM091751.1 scf7180000181872 98.91 True CONTIG scf7180000181872 1284 correct CONTIG scf7180000181873 1088 unaligned CONTIG scf7180000181874 309 unaligned 4668029 4668563 1 535 CM091768.1 scf7180000181875 100.0 True CONTIG scf7180000181875 786 correct 6874253 6875405 1182 29 CM091761.1 scf7180000181876 99.48 True translocation 7526411 7526954 1726 1183 CM091753.1 scf7180000181876 99.34 True CONTIG scf7180000181876 1728 misassembled 3275786 3277492 1707 1 CM091760.1 scf7180000181877 99.47 True CONTIG scf7180000181877 1711 correct 10445739 10447745 2009 1 CM091762.1 scf7180000181878 99.55 True CONTIG scf7180000181878 2118 correct CONTIG scf7180000181879 355 unaligned CONTIG scf7180000181880 381 unaligned CONTIG scf7180000181881 440 unaligned CONTIG scf7180000181882 468 unaligned CONTIG scf7180000181883 335 unaligned CONTIG scf7180000181884 510 unaligned CONTIG scf7180000181885 345 unaligned 16358740 16359396 657 1 CM091752.1 scf7180000181886 99.85 True CONTIG scf7180000181886 657 correct 640352 641609 1 1258 CM091768.1 scf7180000181887 99.76 True CONTIG scf7180000181887 1667 correct CONTIG scf7180000181888 396 unaligned 12231347 12231977 1068 438 CM091760.1 scf7180000181889 100.0 True CONTIG scf7180000181889 1068 correct CONTIG scf7180000181890 337 unaligned 1611878 1613549 1 1672 CM091767.1 scf7180000181891 99.22 True CONTIG scf7180000181891 1749 correct 6847574 6849099 1 1524 CM091764.1 scf7180000181892 99.41 True CONTIG scf7180000181892 1552 correct CONTIG scf7180000181893 439 unaligned 9741927 9742878 1087 136 CM091762.1 scf7180000181894 99.89 True CONTIG scf7180000181894 1089 correct 12913413 12914994 1 1584 CM091755.1 scf7180000181895 99.56 True translocation 9901583 9902269 2268 1585 CM091762.1 scf7180000181895 99.42 True CONTIG scf7180000181895 2268 misassembled CONTIG scf7180000181896 699 unaligned 8723468 8724791 1 1324 CM091764.1 scf7180000181897 99.62 True translocation 8800064 8800903 1325 2166 CM091763.1 scf7180000181897 99.31 True CONTIG scf7180000181897 2176 misassembled 2580964 2581848 1 884 CM091757.1 scf7180000181898 99.32 True CONTIG scf7180000181898 999 correct 10549654 10550345 692 1 CM091763.1 scf7180000181899 99.57 True local misassembly 10548304 10549468 1857 693 CM091763.1 scf7180000181899 99.66 True CONTIG scf7180000181899 1857 correct CONTIG scf7180000181900 323 unaligned CONTIG scf7180000181901 386 unaligned 2568627 2570361 1751 19 CM091751.1 scf7180000181902 99.25 True CONTIG scf7180000181902 1797 correct 4411909 4413535 1631 6 CM091758.1 scf7180000181903 99.82 True CONTIG scf7180000181903 1631 correct 5440507 5441909 1403 1 CM091756.1 scf7180000181904 99.64 True CONTIG scf7180000181904 1520 correct 10582543 10583366 830 7 CM091756.1 scf7180000181905 99.64 True CONTIG scf7180000181905 861 correct CONTIG scf7180000181906 437 unaligned CONTIG scf7180000181907 471 unaligned CONTIG scf7180000181908 393 unaligned 8539647 8541079 1433 1 CM091754.1 scf7180000181909 99.79 True CONTIG scf7180000181909 1450 correct 17717922 17718653 1 732 CM091751.1 scf7180000181910 100.0 True CONTIG scf7180000181910 759 correct CONTIG scf7180000181911 304 unaligned CONTIG scf7180000181912 382 unaligned CONTIG scf7180000181913 320 unaligned CONTIG scf7180000181914 319 unaligned 7518749 7519571 823 1 CM091765.1 scf7180000181915 99.51 True CONTIG scf7180000181915 994 correct 11186893 11187554 662 1 CM091756.1 scf7180000181916 99.7 True CONTIG scf7180000181916 763 correct 866117 867609 1 1490 CM091768.1 scf7180000181917 99.06 True CONTIG scf7180000181917 1531 correct CONTIG scf7180000181918 353 unaligned 6822841 6825643 1 2792 CM091756.1 scf7180000181919 99.54 True CONTIG scf7180000181919 2792 correct CONTIG scf7180000181920 476 unaligned CONTIG scf7180000181921 200 unaligned 15452868 15454862 1 1994 CM091751.1 scf7180000181922 99.95 True CONTIG scf7180000181922 2086 correct CONTIG scf7180000181923 445 unaligned 2807877 2809786 1911 1 CM091760.1 scf7180000181924 99.84 True CONTIG scf7180000181924 2101 correct CONTIG scf7180000181925 444 unaligned CONTIG scf7180000181926 411 unaligned 7513527 7515010 1494 1 CM091766.1 scf7180000181927 98.6 True translocation 6188018 6188879 1495 2358 CM091756.1 scf7180000181927 99.43 True CONTIG scf7180000181927 2358 misassembled CONTIG scf7180000181928 362 unaligned 1469678 1471419 1 1742 CM091761.1 scf7180000181929 100.0 True CONTIG scf7180000181929 1783 correct CONTIG scf7180000181930 553 unaligned 9922067 9922658 592 1 CM091760.1 scf7180000181931 99.83 True CONTIG scf7180000181931 643 correct CONTIG scf7180000181932 461 unaligned 339720 341145 1426 1 CM091764.1 scf7180000181933 100.0 True CONTIG scf7180000181933 1563 correct 2456683 2457338 704 48 CM091752.1 scf7180000181934 99.85 True CONTIG scf7180000181934 704 correct 5985968 5987136 1 1168 CM091753.1 scf7180000181935 99.74 True CONTIG scf7180000181935 1194 correct 6250228 6250788 2 563 CM091765.1 scf7180000181936 99.47 True CONTIG scf7180000181936 778 correct CONTIG scf7180000181937 368 unaligned 3475775 3477117 1343 1 CM091766.1 scf7180000181938 99.7 True translocation 16504260 16505044 1344 2128 CM091755.1 scf7180000181938 99.75 True CONTIG scf7180000181938 2128 misassembled 639377 640222 1 848 CM091751.1 scf7180000181939 99.29 True translocation 9123293 9123921 849 1475 CM091757.1 scf7180000181939 99.09 True CONTIG scf7180000181939 1490 misassembled 10969019 10970531 1 1516 CM091756.1 scf7180000181940 98.75 True CONTIG scf7180000181940 1680 correct 2940240 2941379 21 1160 CM091766.1 scf7180000181941 99.47 True CONTIG scf7180000181941 1239 correct 11193215 11194418 1208 8 CM091763.1 scf7180000181942 99.17 True CONTIG scf7180000181942 1220 correct CONTIG scf7180000181943 534 unaligned CONTIG scf7180000181944 411 unaligned 5314844 5316753 1909 1 CM091768.1 scf7180000181945 99.95 True CONTIG scf7180000181945 1985 correct 5968773 5970660 1867 1 CM091756.1 scf7180000181946 98.36 True CONTIG scf7180000181946 2210 correct 6893417 6894295 1 879 CM091760.1 scf7180000181947 99.43 True CONTIG scf7180000181947 1207 correct CONTIG scf7180000181948 480 unaligned 9705651 9707001 1 1351 CM091758.1 scf7180000181949 99.56 True CONTIG scf7180000181949 1395 correct CONTIG scf7180000181950 578 unaligned 3285970 3287584 1 1625 CM091756.1 scf7180000181951 97.14 True translocation 14324658 14325482 2450 1626 CM091751.1 scf7180000181951 99.76 True CONTIG scf7180000181951 2450 misassembled 408888 410773 15 1900 CM091761.1 scf7180000181952 99.89 True CONTIG scf7180000181952 1900 correct 3200660 3201514 856 1 CM091761.1 scf7180000181953 99.88 True CONTIG scf7180000181953 1251 correct 2229327 2231105 1780 1 CM091752.1 scf7180000181954 99.55 True CONTIG scf7180000181954 1828 correct CONTIG scf7180000181955 338 unaligned 10233592 10234453 1 862 CM091760.1 scf7180000181956 99.88 True local misassembly 10234622 10235806 863 2047 CM091760.1 scf7180000181956 99.83 True CONTIG scf7180000181956 2047 correct CONTIG scf7180000181957 366 unaligned 16571315 16573332 2595 578 CM091753.1 scf7180000181958 99.01 True CONTIG scf7180000181958 2600 correct CONTIG scf7180000181959 329 unaligned 7752564 7753151 1 589 CM091761.1 scf7180000181960 99.49 True translocation 1157825 1158919 1684 590 CM091762.1 scf7180000181960 99.82 True CONTIG scf7180000181960 1684 misassembled 16069326 16069845 1 521 CM091751.1 scf7180000181962 99.81 True CONTIG scf7180000181962 764 correct CONTIG scf7180000181963 569 unaligned CONTIG scf7180000181964 391 unaligned CONTIG scf7180000181965 2827 unaligned 13705752 13706319 1 568 CM091757.1 scf7180000181966 100.0 True CONTIG scf7180000181966 630 correct CONTIG scf7180000181967 346 unaligned CONTIG scf7180000181968 380 unaligned 1358858 1359806 1182 234 CM091767.1 scf7180000181969 100.0 True translocation 12324970 12326009 1183 2186 CM091760.1 scf7180000181969 95.67 True CONTIG scf7180000181969 2186 misassembled CONTIG scf7180000181970 367 unaligned 16335089 16335692 830 227 CM091756.1 scf7180000181971 98.01 True CONTIG scf7180000181971 841 correct 4384526 4385892 1383 11 CM091751.1 scf7180000181972 98.98 True CONTIG scf7180000181972 1461 correct CONTIG scf7180000181973 381 unaligned CONTIG scf7180000181974 324 unaligned 2327971 2329281 1 1311 CM091758.1 scf7180000181975 100.0 True CONTIG scf7180000181975 1508 correct CONTIG scf7180000181976 618 unaligned CONTIG scf7180000181977 490 unaligned 6766682 6767686 1005 1 CM091760.1 scf7180000181978 100.0 True CONTIG scf7180000181978 1052 correct 13372622 13373237 612 1 CM091758.1 scf7180000181979 98.66 True CONTIG scf7180000181979 3138 correct_unaligned 94619 96238 2047 428 CM091751.1 scf7180000181980 100.0 True CONTIG scf7180000181980 2047 correct 6416322 6417734 1 1413 CM091762.1 scf7180000181981 99.93 True translocation 3807127 3807775 2062 1414 CM091757.1 scf7180000181981 100.0 True CONTIG scf7180000181981 2062 misassembled 2364809 2366703 1898 1 CM091751.1 scf7180000181982 99.58 True CONTIG scf7180000181982 2057 correct CONTIG scf7180000181983 395 unaligned 7458765 7459655 899 1 CM091754.1 scf7180000181984 98.0 True CONTIG scf7180000181984 908 correct 1007158 1007755 1 598 CM091765.1 scf7180000181985 99.21 True translocation 3888348 3889553 599 1805 CM091753.1 scf7180000181985 99.83 True CONTIG scf7180000181985 1805 misassembled 2849625 2850617 1 993 CM091758.1 scf7180000181986 100.0 True CONTIG scf7180000181986 1019 correct CONTIG scf7180000181987 386 unaligned 4103932 4104951 1020 1 CM091768.1 scf7180000181988 100.0 True fake: scaffold gap size wrong estimation (local) 4102313 4103245 3148 2205 CM091768.1 scf7180000181988 100.0 True fake: scaffold gap size wrong estimation (local) 4100063 4100828 5354 4589 CM091768.1 scf7180000181988 100.0 True CONTIG scf7180000181988 5354 correct CONTIG scf7180000181989 462 unaligned CONTIG scf7180000181990 899 unaligned 7401246 7403184 1938 1 CM091760.1 scf7180000181991 99.18 True CONTIG scf7180000181991 1972 correct 2964500 2966352 1853 1 CM091767.1 scf7180000181992 99.78 True CONTIG scf7180000181992 2092 correct 2245165 2246786 9 1629 CM091758.1 scf7180000181993 99.38 True CONTIG scf7180000181993 1631 correct 713778 714667 892 1 CM091759.1 scf7180000181994 99.22 True CONTIG scf7180000181994 1020 correct 1139673 1140623 1 951 CM091765.1 scf7180000181995 99.47 True CONTIG scf7180000181995 1205 correct CONTIG scf7180000181996 430 unaligned 5325615 5326539 1 926 CM091764.1 scf7180000181997 99.68 True translocation 2034014 2035134 927 2047 CM091754.1 scf7180000181997 99.91 True CONTIG scf7180000181997 2047 misassembled 2055055 2055929 441 1315 CM091752.1 scf7180000181998 99.89 True local misassembly 2056081 2056678 1316 1913 CM091752.1 scf7180000181998 99.16 True CONTIG scf7180000181998 2351 correct CONTIG scf7180000181999 398 unaligned 5841455 5843332 1876 1 CM091765.1 scf7180000182000 99.63 True CONTIG scf7180000182000 1917 correct 13004390 13006377 2047 59 CM091751.1 scf7180000182001 99.5 True CONTIG scf7180000182001 2047 correct CONTIG scf7180000182002 308 unaligned CONTIG scf7180000182003 333 unaligned 15186615 15187539 21 945 CM091759.1 scf7180000182004 99.89 True CONTIG scf7180000182004 979 correct CONTIG scf7180000182005 347 unaligned CONTIG scf7180000182006 523 unaligned CONTIG scf7180000182007 378 unaligned CONTIG scf7180000182008 366 unaligned 5714594 5716106 1 1512 CM091762.1 scf7180000182009 99.08 True CONTIG scf7180000182009 1553 correct 9578317 9580145 1829 1 CM091759.1 scf7180000182010 99.45 True CONTIG scf7180000182010 2067 correct 11574570 11575138 569 1 CM091755.1 scf7180000182011 98.95 True CONTIG scf7180000182011 736 correct 2111769 2113175 1 1407 CM091764.1 scf7180000182012 100.0 True CONTIG scf7180000182012 1442 correct 9872981 9874389 1 1409 CM091764.1 scf7180000182013 99.86 True CONTIG scf7180000182013 1431 correct 14571567 14572400 1 837 CM091759.1 scf7180000182014 99.4 True CONTIG scf7180000182014 853 correct 5692251 5704751 1 12499 CM091767.1 scf7180000182015 99.06 True CONTIG scf7180000182015 12499 correct 2719320 2720266 947 1 CM091764.1 scf7180000182016 100.0 True translocation 15340896 15341695 1746 948 CM091755.1 scf7180000182016 99.03 True CONTIG scf7180000182016 1746 misassembled CONTIG scf7180000182017 456 unaligned 8064060 8065409 1 1351 CM091755.1 scf7180000182018 99.5 True translocation 1911893 1913367 1352 2824 CM091767.1 scf7180000182018 99.53 True CONTIG scf7180000182018 2824 misassembled CONTIG scf7180000182019 850 unaligned 9555948 9556604 223 879 CM091755.1 scf7180000182020 99.7 True local misassembly 9557228 9558064 1245 2081 CM091755.1 scf7180000182020 99.88 True CONTIG scf7180000182020 2081 correct 10790380 10791659 1 1280 CM091763.1 scf7180000182021 99.92 True translocation 6104460 6105665 2667 1463 CM091759.1 scf7180000182021 99.92 True CONTIG scf7180000182021 2667 misassembled CONTIG scf7180000182022 671 unaligned CONTIG scf7180000182023 385 unaligned 15579285 15580233 1 949 CM091757.1 scf7180000182024 99.79 True CONTIG scf7180000182024 949 correct CONTIG scf7180000182025 488 unaligned 7574137 7575316 1180 1 CM091754.1 scf7180000182026 99.58 True CONTIG scf7180000182026 1336 correct CONTIG scf7180000182027 424 unaligned 5901804 5903534 1731 1 CM091762.1 scf7180000182028 100.0 True translocation 9736818 9737319 1732 2234 CM091760.1 scf7180000182028 99.63 True CONTIG scf7180000182028 2234 misassembled 1143438 1144254 817 1 CM091752.1 scf7180000182029 99.88 True CONTIG scf7180000182029 844 correct 4473912 4475066 1 1155 CM091751.1 scf7180000182030 99.83 True CONTIG scf7180000182030 1158 correct 5566196 5567327 1132 1 CM091756.1 scf7180000182031 99.65 True CONTIG scf7180000182031 1186 correct 2279953 2281594 1642 1 CM091768.1 scf7180000182032 99.7 True CONTIG scf7180000182032 1796 correct 14472841 14473711 1 871 CM091758.1 scf7180000182033 99.43 True CONTIG scf7180000182033 1250 correct 6481386 6483242 192 2047 CM091760.1 scf7180000182034 99.41 True CONTIG scf7180000182034 2047 correct CONTIG scf7180000182035 300 unaligned 16235499 16236139 106 740 CM091752.1 scf7180000182036 96.88 True CONTIG scf7180000182036 742 correct 2269683 2270264 582 1 CM091754.1 scf7180000182037 99.14 True CONTIG scf7180000182037 715 correct CONTIG scf7180000182038 324 unaligned 9643285 9644688 1404 1 CM091759.1 scf7180000182039 99.86 True CONTIG scf7180000182039 1515 correct CONTIG scf7180000182040 428 unaligned 5183319 5183857 539 1 CM091766.1 scf7180000182041 99.26 True CONTIG scf7180000182041 709 correct 12744187 12745286 1100 1 CM091760.1 scf7180000182042 99.91 True CONTIG scf7180000182042 1142 correct 1973742 1975328 1587 1 CM091763.1 scf7180000182043 100.0 True CONTIG scf7180000182043 1654 correct 3199275 3200319 1046 1 CM091755.1 scf7180000182044 99.33 True CONTIG scf7180000182044 1061 correct 7502476 7503511 1035 1 CM091763.1 scf7180000182045 98.84 True CONTIG scf7180000182045 1046 correct CONTIG scf7180000182046 346 unaligned CONTIG scf7180000182047 365 unaligned CONTIG scf7180000182048 415 unaligned CONTIG scf7180000182049 600 unaligned 15791746 15793438 1693 1 CM091755.1 scf7180000182050 100.0 True CONTIG scf7180000182050 1736 correct CONTIG scf7180000182051 605 unaligned CONTIG scf7180000182052 394 unaligned CONTIG scf7180000182053 307 unaligned 622437 623295 859 1 CM091754.1 scf7180000182054 99.42 True CONTIG scf7180000182054 945 correct 4712631 4713728 1 1098 CM091765.1 scf7180000182055 99.64 True CONTIG scf7180000182055 1228 correct CONTIG scf7180000182056 320 unaligned 3522111 3523693 1585 1 CM091766.1 scf7180000182057 99.5 True translocation 1354177 1355316 1591 2730 CM091761.1 scf7180000182057 99.74 True CONTIG scf7180000182057 2730 misassembled 317051 318711 1669 1 CM091754.1 scf7180000182058 98.62 True CONTIG scf7180000182058 1707 correct 1752785 1754018 19 1252 CM091762.1 scf7180000182059 99.84 True translocation 6459356 6459878 1253 1779 CM091757.1 scf7180000182059 99.09 True CONTIG scf7180000182059 1779 misassembled CONTIG scf7180000182060 418 unaligned 12125926 12126528 1 604 CM091760.1 scf7180000182061 98.58 True local misassembly 12129121 12129997 605 1481 CM091760.1 scf7180000182061 99.77 True CONTIG scf7180000182061 1491 correct CONTIG scf7180000182062 809 unaligned 14608995 14610519 1 1523 CM091758.1 scf7180000182063 99.34 True relocation, inconsistency = 36934 14571143 14572060 2441 1524 CM091758.1 scf7180000182063 99.58 True CONTIG scf7180000182063 2492 misassembled CONTIG scf7180000182064 325 unaligned CONTIG scf7180000182065 409 unaligned 4659405 4662497 1 3071 CM091760.1 scf7180000182066 98.65 True CONTIG scf7180000182066 3071 correct CONTIG scf7180000182067 448 unaligned 7807393 7808808 1452 24 CM091756.1 scf7180000182068 98.74 True CONTIG scf7180000182068 1532 correct 4309736 4310902 1167 1 CM091767.1 scf7180000182069 99.66 True CONTIG scf7180000182069 1581 correct CONTIG scf7180000182070 329 unaligned 4156521 4158527 2006 1 CM091757.1 scf7180000182072 99.95 True CONTIG scf7180000182072 2107 correct CONTIG scf7180000182073 368 unaligned 4871804 4872972 1169 1 CM091759.1 scf7180000182074 100.0 True translocation 7066589 7067626 2208 1170 CM091761.1 scf7180000182074 99.81 True CONTIG scf7180000182074 2208 misassembled 5226565 5227123 559 1 CM091768.1 scf7180000182075 100.0 True CONTIG scf7180000182075 559 correct 2398028 2398848 417 1237 CM091768.1 scf7180000182076 98.9 True CONTIG scf7180000182076 1238 correct 11627423 11628482 1060 1 CM091757.1 scf7180000182077 99.91 True CONTIG scf7180000182077 1171 correct CONTIG scf7180000182078 457 unaligned CONTIG scf7180000182079 369 unaligned CONTIG scf7180000182080 428 unaligned 1424361 1425675 1 1315 CM091764.1 scf7180000182081 100.0 True CONTIG scf7180000182081 1350 correct CONTIG scf7180000182082 325 unaligned 1925188 1925768 1 581 CM091755.1 scf7180000182083 99.83 True CONTIG scf7180000182083 664 correct 15153436 15154598 1164 1 CM091759.1 scf7180000182084 99.91 True CONTIG scf7180000182084 1171 correct 125849 126910 1 1062 CM091755.1 scf7180000182085 100.0 True CONTIG scf7180000182085 1363 correct 7173607 7174633 1 1029 CM091754.1 scf7180000182086 99.51 True CONTIG scf7180000182086 1055 correct CONTIG scf7180000182087 481 unaligned CONTIG scf7180000182088 461 unaligned 9867788 9868445 1 659 CM091756.1 scf7180000182089 99.39 True CONTIG scf7180000182089 659 correct CONTIG scf7180000182090 2477 unaligned CONTIG scf7180000182091 696 unaligned 5136925 5138566 1 1642 CM091756.1 scf7180000182092 99.27 True CONTIG scf7180000182092 1759 correct 4413652 4414159 1 508 CM091758.1 scf7180000182093 100.0 True CONTIG scf7180000182093 662 correct 7070685 7072125 1441 1 CM091763.1 scf7180000182094 99.65 True CONTIG scf7180000182094 1847 correct 4561620 4562772 1 1148 CM091762.1 scf7180000182095 99.22 True CONTIG scf7180000182095 1228 correct 7140543 7141119 838 262 CM091760.1 scf7180000182096 99.48 True CONTIG scf7180000182096 838 correct CONTIG scf7180000182097 433 unaligned 17142605 17144529 1925 1 CM091753.1 scf7180000182098 99.17 True CONTIG scf7180000182098 1925 correct 4729669 4731381 1713 1 CM091765.1 scf7180000182099 99.36 True CONTIG scf7180000182099 2045 correct CONTIG scf7180000182100 351 unaligned CONTIG scf7180000182101 371 unaligned 12338581 12340100 1520 1 CM091756.1 scf7180000182102 99.8 True local misassembly 12337332 12338256 2445 1521 CM091756.1 scf7180000182102 100.0 True CONTIG scf7180000182102 2445 correct CONTIG scf7180000182103 301 unaligned 5734225 5735899 1 1672 CM091758.1 scf7180000182104 99.34 True translocation 5430222 5431624 3076 1673 CM091751.1 scf7180000182104 99.65 True CONTIG scf7180000182104 3076 misassembled 20359197 20359820 1 625 CM091751.1 scf7180000182105 99.68 True CONTIG scf7180000182105 651 correct 7618873 7620791 1919 1 CM091764.1 scf7180000182106 99.79 True translocation 362057 362558 1920 2421 CM091765.1 scf7180000182106 99.81 True CONTIG scf7180000182106 2445 misassembled 14889919 14891504 1595 1 CM091758.1 scf7180000182107 98.81 True CONTIG scf7180000182107 1936 correct 3900017 3901647 1 1631 CM091755.1 scf7180000182108 99.82 True CONTIG scf7180000182108 1709 correct 4750263 4750974 712 1 CM091764.1 scf7180000182109 100.0 True translocation 2230807 2232140 713 2047 CM091751.1 scf7180000182109 99.4 True CONTIG scf7180000182109 2047 misassembled CONTIG scf7180000182110 493 unaligned 5492729 5494734 1 2006 CM091761.1 scf7180000182111 99.85 True CONTIG scf7180000182111 2006 correct 184670 185397 728 1 CM091755.1 scf7180000182112 100.0 True CONTIG scf7180000182112 762 correct 1591086 1592670 23 1602 CM091752.1 scf7180000182113 98.12 True CONTIG scf7180000182113 1677 correct 5164152 5165553 1402 1 CM091761.1 scf7180000182114 99.5 True translocation 2589366 2590652 1403 2688 CM091768.1 scf7180000182114 99.85 True CONTIG scf7180000182114 2688 misassembled 11179583 11180482 894 1 CM091757.1 scf7180000182115 98.78 True CONTIG scf7180000182115 907 correct CONTIG scf7180000182116 601 unaligned 4765890 4766439 550 1 CM091758.1 scf7180000182117 100.0 True CONTIG scf7180000182117 710 correct 10347692 10348651 399 1365 CM091761.1 scf7180000182118 98.86 True CONTIG scf7180000182118 1365 correct 721072 721657 1 586 CM091756.1 scf7180000182119 100.0 True CONTIG scf7180000182119 600 correct CONTIG scf7180000182120 421 unaligned 10226979 10227959 20 1000 CM091756.1 scf7180000182121 99.49 True CONTIG scf7180000182121 1045 correct CONTIG scf7180000182122 401 unaligned 362683 364062 1380 1 CM091753.1 scf7180000182123 100.0 True CONTIG scf7180000182123 1797 correct CONTIG scf7180000182124 578 unaligned CONTIG scf7180000182125 421 unaligned 11783622 11784225 608 5 CM091757.1 scf7180000182126 99.5 True CONTIG scf7180000182126 616 correct 253869 254893 1 1025 CM091753.1 scf7180000182127 99.9 True CONTIG scf7180000182127 1126 correct 1646905 1647774 971 101 CM091751.1 scf7180000182128 99.08 True CONTIG scf7180000182128 971 correct 7345660 7347551 1 1892 CM091757.1 scf7180000182129 99.63 True CONTIG scf7180000182129 2256 correct CONTIG scf7180000182130 404 unaligned CONTIG scf7180000182131 377 unaligned 10268814 10269997 1 1184 CM091751.1 scf7180000182132 99.58 True CONTIG scf7180000182132 1206 correct 9557237 9558064 878 51 CM091755.1 scf7180000182133 99.88 True CONTIG scf7180000182133 878 correct 14746229 14746942 718 1 CM091757.1 scf7180000182134 99.44 True CONTIG scf7180000182134 773 correct CONTIG scf7180000182135 421 unaligned 12255487 12256965 1482 1 CM091755.1 scf7180000182136 99.06 True CONTIG scf7180000182136 1508 correct 8538506 8540023 1517 1 CM091755.1 scf7180000182137 99.34 True CONTIG scf7180000182137 1549 correct 1463291 1464693 1 1404 CM091753.1 scf7180000182138 99.86 True CONTIG scf7180000182138 1404 correct 11133697 11134863 1166 1 CM091751.1 scf7180000182139 99.74 True CONTIG scf7180000182139 1180 correct 7962144 7963541 1397 4 CM091760.1 scf7180000182140 99.5 True translocation 4802712 4804405 1398 3092 CM091758.1 scf7180000182140 99.71 True CONTIG scf7180000182140 3092 misassembled CONTIG scf7180000182141 339 unaligned CONTIG scf7180000182142 454 unaligned 9713529 9714292 764 1 CM091753.1 scf7180000182143 100.0 True CONTIG scf7180000182143 1042 correct 3690110 3691629 1 1521 CM091761.1 scf7180000182144 99.41 True CONTIG scf7180000182144 1676 correct 959490 960796 1319 3 CM091752.1 scf7180000182145 99.09 True CONTIG scf7180000182145 1319 correct 16276646 16277761 26 1141 CM091755.1 scf7180000182146 99.82 True CONTIG scf7180000182146 2034 correct 291711 292407 151 847 CM091754.1 scf7180000182147 99.86 True CONTIG scf7180000182147 847 correct 1327328 1328640 1 1314 CM091766.1 scf7180000182148 99.24 True CONTIG scf7180000182148 1415 correct CONTIG scf7180000182149 428 unaligned CONTIG scf7180000182150 312 unaligned 1274194 1275399 1201 1 CM091758.1 scf7180000182151 99.34 True CONTIG scf7180000182151 1393 correct 12826560 12828617 1 2058 CM091757.1 scf7180000182152 99.71 True CONTIG scf7180000182152 2060 correct 4761248 4763007 1760 1 CM091767.1 scf7180000182153 99.77 True local misassembly 4759624 4760694 2865 1795 CM091767.1 scf7180000182153 99.16 True CONTIG scf7180000182153 2865 correct 5089721 5090396 1031 363 CM091768.1 scf7180000182154 98.96 True CONTIG scf7180000182154 1031 correct CONTIG scf7180000182155 384 unaligned 3809274 3810485 1 1212 CM091759.1 scf7180000182156 99.84 True translocation 1608895 1610479 2797 1213 CM091755.1 scf7180000182156 99.94 True CONTIG scf7180000182156 2797 misassembled 1549793 1550972 1448 268 CM091752.1 scf7180000182157 99.83 True CONTIG scf7180000182157 1448 correct 4098717 4099766 1051 1 CM091762.1 scf7180000182158 99.24 True CONTIG scf7180000182158 1080 correct 19011013 19012463 1 1452 CM091751.1 scf7180000182159 99.59 True CONTIG scf7180000182159 1505 correct CONTIG scf7180000182160 416 unaligned CONTIG scf7180000182161 415 unaligned 13731686 13732751 1 1066 CM091751.1 scf7180000182162 99.53 True CONTIG scf7180000182162 1107 correct CONTIG scf7180000182163 446 unaligned 5416760 5417959 628 1827 CM091760.1 scf7180000182164 100.0 True CONTIG scf7180000182164 2047 correct 10566715 10567695 1 983 CM091762.1 scf7180000182165 99.39 True CONTIG scf7180000182165 1595 correct 14566915 14568090 1 1176 CM091751.1 scf7180000182166 99.66 True CONTIG scf7180000182166 1337 correct 10709615 10711260 1645 1 CM091766.1 scf7180000182167 99.57 True CONTIG scf7180000182167 1645 correct 15493406 15495299 1891 1 CM091759.1 scf7180000182168 99.74 True translocation 14314595 14315792 1892 3089 CM091756.1 scf7180000182168 99.67 True CONTIG scf7180000182168 3107 misassembled 816474 817437 964 1 CM091764.1 scf7180000182169 99.9 True CONTIG scf7180000182169 1017 correct 10394633 10395664 1032 1 CM091765.1 scf7180000182170 99.9 True CONTIG scf7180000182170 1074 correct 5464588 5465285 32 729 CM091762.1 scf7180000182171 99.28 True CONTIG scf7180000182171 729 correct CONTIG scf7180000182172 337 unaligned 593025 593769 745 1 CM091753.1 scf7180000182173 100.0 True CONTIG scf7180000182173 811 correct 16562763 16564561 1798 1 CM091754.1 scf7180000182174 99.94 True CONTIG scf7180000182174 1866 correct CONTIG scf7180000182175 386 unaligned CONTIG scf7180000182176 321 unaligned 3145589 3146674 1086 1 CM091765.1 scf7180000182177 100.0 True CONTIG scf7180000182177 1761 correct 4892401 4893848 100 1547 CM091768.1 scf7180000182178 100.0 True CONTIG scf7180000182178 1547 correct 1990112 1991014 903 1 CM091762.1 scf7180000182179 99.56 True CONTIG scf7180000182179 1029 correct 288936 289640 706 1 CM091752.1 scf7180000182180 99.15 True CONTIG scf7180000182180 796 correct 1991769 2069456 77206 1 CM091754.1 scf7180000182181 99.04 True CONTIG scf7180000182181 77208 correct CONTIG scf7180000182182 354 unaligned 4784945 4786235 1 1291 CM091751.1 scf7180000182183 99.54 True CONTIG scf7180000182183 1291 correct CONTIG scf7180000182184 420 unaligned CONTIG scf7180000182185 327 unaligned CONTIG scf7180000182186 416 unaligned 7601753 7602564 812 1 CM091751.1 scf7180000182187 99.75 True CONTIG scf7180000182187 1247 correct 7653737 7654418 682 1 CM091757.1 scf7180000182188 100.0 True CONTIG scf7180000182188 935 correct 9359151 9360652 1500 1 CM091753.1 scf7180000182189 98.87 True CONTIG scf7180000182189 1601 correct CONTIG scf7180000182190 506 unaligned 3840326 3841220 895 1 CM091754.1 scf7180000182191 100.0 True CONTIG scf7180000182191 1115 correct 798880 799858 1 979 CM091764.1 scf7180000182192 99.9 True CONTIG scf7180000182192 1036 correct CONTIG scf7180000182193 447 unaligned CONTIG scf7180000182194 321 unaligned CONTIG scf7180000182195 363 unaligned CONTIG scf7180000182196 414 unaligned CONTIG scf7180000182197 301 unaligned CONTIG scf7180000182198 357 unaligned CONTIG scf7180000182199 381 unaligned CONTIG scf7180000182200 396 unaligned CONTIG scf7180000182201 545 unaligned CONTIG scf7180000182202 511 unaligned 2458661 2459439 1 780 CM091762.1 scf7180000182203 99.87 True CONTIG scf7180000182203 957 correct 1210755 1211984 1 1230 CM091755.1 scf7180000182204 100.0 True CONTIG scf7180000182204 1352 correct 10225511 10227402 1892 1 CM091761.1 scf7180000182205 99.79 True translocation 1612093 1613138 1893 2938 CM091759.1 scf7180000182205 99.91 True CONTIG scf7180000182205 2938 misassembled CONTIG scf7180000182206 394 unaligned 5332611 5333304 1 694 CM091765.1 scf7180000182207 99.57 True CONTIG scf7180000182207 872 correct 2251942 2253457 1509 1 CM091760.1 scf7180000182208 99.21 True translocation 1668924 1669531 2131 1523 CM091758.1 scf7180000182208 99.51 True CONTIG scf7180000182208 2131 misassembled CONTIG scf7180000182209 320 unaligned 7899415 7903721 4319 13 CM091753.1 scf7180000182210 99.86 True CONTIG scf7180000182210 4319 correct CONTIG scf7180000182211 311 unaligned 10843953 10845446 1 1493 CM091764.1 scf7180000182212 99.33 True CONTIG scf7180000182212 1548 correct 1162357 1163550 1191 1 CM091764.1 scf7180000182213 99.66 True CONTIG scf7180000182213 1232 correct 13793886 13794869 16 998 CM091758.1 scf7180000182214 99.49 True CONTIG scf7180000182214 1065 correct 12162546 12163675 1 1134 CM091758.1 scf7180000182215 99.29 True CONTIG scf7180000182215 1189 correct CONTIG scf7180000182216 311 unaligned 11443475 11445112 1 1639 CM091764.1 scf7180000182217 99.82 True CONTIG scf7180000182217 1670 correct 13899655 13900209 1 556 CM091758.1 scf7180000182218 99.64 True CONTIG scf7180000182218 562 correct CONTIG scf7180000182219 319 unaligned 7845641 7846154 514 1 CM091756.1 scf7180000182220 98.64 True CONTIG scf7180000182220 548 correct 14440182 14441110 929 1 CM091756.1 scf7180000182221 100.0 True CONTIG scf7180000182221 1045 correct 18687711 18688585 857 1 CM091751.1 scf7180000182222 97.37 True CONTIG scf7180000182222 912 correct 4025292 4026196 1 905 CM091759.1 scf7180000182223 99.78 True CONTIG scf7180000182223 905 correct 13302117 13302628 610 99 CM091751.1 scf7180000182224 99.22 True CONTIG scf7180000182224 610 correct 6896672 6897359 904 217 CM091763.1 scf7180000182225 99.85 True CONTIG scf7180000182225 904 correct 16875853 16876923 1081 10 CM091754.1 scf7180000182226 97.69 True CONTIG scf7180000182226 1081 correct CONTIG scf7180000182227 345 unaligned 15812729 15813271 1 543 CM091752.1 scf7180000182228 99.26 True CONTIG scf7180000182228 543 correct CONTIG scf7180000182229 344 unaligned CONTIG scf7180000182230 631 unaligned 15208271 15209327 1 1059 CM091759.1 scf7180000182231 99.62 True CONTIG scf7180000182231 1132 correct 1919683 1920266 124 707 CM091753.1 scf7180000182232 98.97 True CONTIG scf7180000182232 722 correct 916338 917930 1 1593 CM091759.1 scf7180000182233 99.18 True CONTIG scf7180000182233 1635 correct 11887096 11888147 10 1069 CM091762.1 scf7180000182234 96.37 True CONTIG scf7180000182234 1069 correct 4019118 4020714 1598 1 CM091756.1 scf7180000182235 99.94 True CONTIG scf7180000182235 1631 correct 1198114 1201005 2882 1 CM091764.1 scf7180000182236 99.55 True CONTIG scf7180000182236 2882 correct CONTIG scf7180000182237 454 unaligned 2001877 2002599 723 1 CM091764.1 scf7180000182238 100.0 True CONTIG scf7180000182238 854 correct 13796323 13797214 1 896 CM091760.1 scf7180000182239 98.66 True CONTIG scf7180000182239 975 correct 9643618 9644281 664 1 CM091757.1 scf7180000182240 99.7 True CONTIG scf7180000182240 752 correct CONTIG scf7180000182241 330 unaligned 3600130 3601180 1050 1 CM091768.1 scf7180000182242 99.9 True CONTIG scf7180000182242 1148 correct CONTIG scf7180000182243 564 unaligned 4470492 4471226 1 735 CM091754.1 scf7180000182244 100.0 True CONTIG scf7180000182244 735 correct CONTIG scf7180000182245 397 unaligned CONTIG scf7180000182246 312 unaligned CONTIG scf7180000182247 408 unaligned 12118974 12120503 1528 1 CM091759.1 scf7180000182248 99.74 True CONTIG scf7180000182248 1870 correct CONTIG scf7180000182249 322 unaligned 7284123 7284768 911 266 CM091757.1 scf7180000182250 99.4 True translocation 1189194 1190328 912 2047 CM091764.1 scf7180000182250 99.91 True CONTIG scf7180000182250 2047 misassembled 11036287 11038131 1 1865 CM091755.1 scf7180000182251 98.5 True CONTIG scf7180000182251 2018 correct CONTIG scf7180000182252 793 unaligned 11425864 11427378 1516 1 CM091760.1 scf7180000182253 99.6 True CONTIG scf7180000182253 1538 correct 1067788 1069369 1583 1 CM091757.1 scf7180000182254 99.56 True translocation 8692128 8692831 1584 2287 CM091759.1 scf7180000182254 100.0 True CONTIG scf7180000182254 2287 misassembled 4802696 4804573 1876 1 CM091758.1 scf7180000182255 99.41 True CONTIG scf7180000182255 1919 correct CONTIG scf7180000182256 361 unaligned CONTIG scf7180000182257 355 unaligned 12545214 12546227 1 1014 CM091756.1 scf7180000182258 99.51 True CONTIG scf7180000182258 1014 correct 7608431 7609101 1 672 CM091751.1 scf7180000182259 99.57 True translocation 13952681 13953566 1568 673 CM091759.1 scf7180000182259 98.05 True translocation 12230492 12231645 2722 1569 CM091754.1 scf7180000182259 99.91 True CONTIG scf7180000182259 2722 misassembled CONTIG scf7180000182260 1772 unaligned 2092797 2094652 1856 1 CM091752.1 scf7180000182261 99.89 True CONTIG scf7180000182261 2241 correct CONTIG scf7180000182262 311 unaligned CONTIG scf7180000182263 440 unaligned 2701559 2703283 2047 323 CM091765.1 scf7180000182264 99.77 True CONTIG scf7180000182264 2047 correct 14885188 14886662 2 1476 CM091760.1 scf7180000182265 99.8 True CONTIG scf7180000182265 1476 correct 8923592 8924931 1340 1 CM091759.1 scf7180000182266 99.7 True CONTIG scf7180000182266 1417 correct CONTIG scf7180000182267 433 unaligned 8709168 8709828 1 661 CM091760.1 scf7180000182268 99.39 True CONTIG scf7180000182268 706 correct CONTIG scf7180000182269 677 unaligned CONTIG scf7180000182270 783 unaligned 1580231 1580980 751 1 CM091763.1 scf7180000182271 99.35 True translocation 9650817 9652095 752 2030 CM091762.1 scf7180000182271 99.84 True CONTIG scf7180000182271 2030 misassembled 13314824 13316415 1 1594 CM091755.1 scf7180000182272 99.5 True relocation, inconsistency = 12996757 317036 318066 2625 1595 CM091755.1 scf7180000182272 100.0 True CONTIG scf7180000182272 2625 misassembled 3026949 3028814 1 1867 CM091755.1 scf7180000182273 99.84 True CONTIG scf7180000182273 1950 correct CONTIG scf7180000182274 2102 unaligned CONTIG scf7180000182275 407 unaligned 93109 93777 1 669 CM091763.1 scf7180000182276 99.55 True CONTIG scf7180000182276 730 correct 11229380 11230979 1 1598 CM091751.1 scf7180000182277 98.51 True CONTIG scf7180000182277 1604 correct 4308093 4309005 1 908 CM091768.1 scf7180000182278 97.71 True CONTIG scf7180000182278 908 correct CONTIG scf7180000182279 333 unaligned 4570130 4570678 3 551 CM091768.1 scf7180000182280 99.64 True CONTIG scf7180000182280 551 correct CONTIG scf7180000182281 427 unaligned 3922355 3922891 929 393 CM091754.1 scf7180000182282 100.0 True CONTIG scf7180000182282 929 correct 6182704 6183326 576 1198 CM091767.1 scf7180000182283 99.52 True CONTIG scf7180000182283 1198 correct 11059750 11060811 1 1062 CM091756.1 scf7180000182284 98.12 True CONTIG scf7180000182284 1215 correct 6582377 6583045 322 991 CM091765.1 scf7180000182285 99.55 True CONTIG scf7180000182285 991 correct 5392298 5393329 1 1032 CM091754.1 scf7180000182286 100.0 True translocation 8432519 8433305 1818 1033 CM091756.1 scf7180000182286 98.89 True CONTIG scf7180000182286 1818 misassembled 10872636 10873697 1062 1 CM091755.1 scf7180000182287 99.62 True translocation 13595342 13596326 1063 2047 CM091754.1 scf7180000182287 99.21 True CONTIG scf7180000182287 2047 misassembled CONTIG scf7180000182288 375 unaligned 12059139 12060367 1229 1 CM091760.1 scf7180000182289 99.67 True CONTIG scf7180000182289 1269 correct 8508443 8509471 1029 1 CM091760.1 scf7180000182290 99.51 True CONTIG scf7180000182290 1097 correct 2681874 2683358 1545 57 CM091768.1 scf7180000182291 99.4 True CONTIG scf7180000182291 1545 correct 9024616 9025859 1 1244 CM091754.1 scf7180000182292 99.52 True CONTIG scf7180000182292 1258 correct 15441219 15442273 1 1055 CM091755.1 scf7180000182293 99.34 True CONTIG scf7180000182293 1140 correct 165491 166259 21 789 CM091764.1 scf7180000182294 100.0 True fake: scaffold gap size wrong estimation (local) 167927 169620 2369 4062 CM091764.1 scf7180000182294 99.53 True indel: indel (<= 5bp) 169621 170421 4064 4864 CM091764.1 scf7180000182294 100.0 True fake: scaffold gap size wrong estimation (local) 170877 172249 5474 6846 CM091764.1 scf7180000182294 99.93 True CONTIG scf7180000182294 6853 correct 8183692 8185541 1853 1 CM091757.1 scf7180000182295 99.57 True translocation 14677744 14678555 2667 1854 CM091753.1 scf7180000182295 99.53 True CONTIG scf7180000182295 2667 misassembled 8355915 8356475 1 561 CM091762.1 scf7180000182296 100.0 True CONTIG scf7180000182296 570 correct CONTIG scf7180000182297 307 unaligned 1230528 1231057 530 1 CM091752.1 scf7180000182298 99.81 True CONTIG scf7180000182298 601 correct 6595719 6596929 1202 1 CM091760.1 scf7180000182299 98.76 True CONTIG scf7180000182299 1238 correct 8911289 8911942 1 654 CM091759.1 scf7180000182300 100.0 True local misassembly 8912162 8912752 655 1245 CM091759.1 scf7180000182300 99.83 True CONTIG scf7180000182300 1245 correct 5909529 5911076 1548 1 CM091754.1 scf7180000182301 100.0 True CONTIG scf7180000182301 1697 correct CONTIG scf7180000182302 398 unaligned 10963637 10964574 959 6 CM091760.1 scf7180000182303 97.91 True translocation 2666092 2666637 960 1503 CM091757.1 scf7180000182303 99.12 True CONTIG scf7180000182303 1503 misassembled CONTIG scf7180000182304 320 unaligned 8097191 8098443 1252 1 CM091761.1 scf7180000182305 99.76 True translocation 10853210 10853715 1253 1757 CM091753.1 scf7180000182305 99.63 True CONTIG scf7180000182305 1757 misassembled 6435706 6436903 1 1204 CM091768.1 scf7180000182306 99.74 True CONTIG scf7180000182306 1204 correct 4409622 4410632 1011 1 CM091767.1 scf7180000182307 99.6 True translocation 7167862 7168481 1632 1012 CM091760.1 scf7180000182307 99.38 True CONTIG scf7180000182307 1632 misassembled 6379941 6380616 1 676 CM091765.1 scf7180000182308 100.0 True relocation, inconsistency = 4586481 10967098 10967918 677 1497 CM091765.1 scf7180000182308 99.76 True CONTIG scf7180000182308 1497 misassembled CONTIG scf7180000182309 424 unaligned 20360877 20361819 958 1 CM091751.1 scf7180000182310 97.39 True CONTIG scf7180000182310 958 correct 6446154 6447461 1496 185 CM091762.1 scf7180000182311 99.31 True CONTIG scf7180000182311 1496 correct 7234681 7236724 1 2040 CM091765.1 scf7180000182312 98.98 True CONTIG scf7180000182312 2040 correct 9978293 9979200 936 29 CM091756.1 scf7180000182313 99.45 True CONTIG scf7180000182313 1013 correct 4030941 4032236 1321 14 CM091755.1 scf7180000182314 98.17 True CONTIG scf7180000182314 1419 correct 17589895 17590931 1037 1 CM091753.1 scf7180000182315 99.42 True CONTIG scf7180000182315 1049 correct 8635694 8637086 1392 1 CM091759.1 scf7180000182316 99.78 True CONTIG scf7180000182316 1405 correct CONTIG scf7180000182317 353 unaligned CONTIG scf7180000182318 365 unaligned CONTIG scf7180000182319 304 unaligned CONTIG scf7180000182320 418 unaligned CONTIG scf7180000182321 379 unaligned 17473593 17474380 787 1 CM091752.1 scf7180000182322 97.72 True CONTIG scf7180000182322 824 correct 1299881 1301417 1548 1 CM091768.1 scf7180000182323 98.64 True CONTIG scf7180000182323 1946 correct CONTIG scf7180000182324 483 unaligned CONTIG scf7180000182325 352 unaligned 15712010 15712988 1 978 CM091755.1 scf7180000182326 99.9 True CONTIG scf7180000182326 989 correct CONTIG scf7180000182327 397 unaligned 7932329 7933541 1 1212 CM091756.1 scf7180000182328 99.51 True CONTIG scf7180000182328 1212 correct CONTIG scf7180000182329 309 unaligned CONTIG scf7180000182330 304 unaligned 4595794 4596407 614 1 CM091768.1 scf7180000182331 99.84 True CONTIG scf7180000182331 634 correct CONTIG scf7180000182332 311 unaligned 15417570 15418949 1 1384 CM091759.1 scf7180000182333 99.35 True CONTIG scf7180000182333 1407 correct 7076551 7077592 1042 1 CM091765.1 scf7180000182334 99.62 True CONTIG scf7180000182334 1515 correct CONTIG scf7180000182335 545 unaligned 202794 204183 1392 1 CM091757.1 scf7180000182336 99.78 True CONTIG scf7180000182336 1392 correct 8668994 8670498 1 1506 CM091764.1 scf7180000182337 99.73 True CONTIG scf7180000182337 1579 correct CONTIG scf7180000182338 634 unaligned CONTIG scf7180000182339 406 unaligned 8935978 8936905 1 928 CM091766.1 scf7180000182340 99.89 True CONTIG scf7180000182340 1009 correct CONTIG scf7180000182341 490 unaligned 12614923 12616718 1796 1 CM091757.1 scf7180000182342 100.0 True CONTIG scf7180000182342 1796 correct 13250540 13251131 1 592 CM091752.1 scf7180000182343 97.98 True CONTIG scf7180000182343 592 correct CONTIG scf7180000182344 509 unaligned CONTIG scf7180000182345 327 unaligned CONTIG scf7180000182346 369 unaligned 2721591 2722345 755 1 CM091755.1 scf7180000182347 100.0 True CONTIG scf7180000182347 836 correct 9835803 9837735 1 1943 CM091755.1 scf7180000182348 99.02 True CONTIG scf7180000182348 2270 correct 4053624 4054805 1 1185 CM091756.1 scf7180000182349 99.07 True CONTIG scf7180000182349 1243 correct 5427905 5429408 1514 12 CM091766.1 scf7180000182350 99.53 True CONTIG scf7180000182350 1732 correct 18404067 18404890 843 20 CM091753.1 scf7180000182351 100.0 True CONTIG scf7180000182351 1143 correct 6530495 6531192 698 1 CM091765.1 scf7180000182352 99.57 True CONTIG scf7180000182352 726 correct 4068176 4069039 864 1 CM091752.1 scf7180000182353 99.77 True CONTIG scf7180000182353 874 correct CONTIG scf7180000182354 302 unaligned CONTIG scf7180000182355 493 unaligned CONTIG scf7180000182356 357 unaligned CONTIG scf7180000182357 375 unaligned CONTIG scf7180000182358 393 unaligned 4922407 4924181 1819 40 CM091766.1 scf7180000182359 99.38 True CONTIG scf7180000182359 1864 correct 7000299 7001155 1 857 CM091765.1 scf7180000182360 99.89 True translocation 14091620 14092810 2047 858 CM091755.1 scf7180000182360 99.75 True CONTIG scf7180000182360 2047 misassembled 5308854 5310311 1423 1 CM091755.1 scf7180000182361 95.11 True CONTIG scf7180000182361 1459 correct CONTIG scf7180000182362 332 unaligned 329913 330958 1046 1 CM091760.1 scf7180000182363 99.9 True CONTIG scf7180000182363 1320 correct CONTIG scf7180000182364 398 unaligned 2115506 2116896 1391 1 CM091763.1 scf7180000182365 100.0 True CONTIG scf7180000182365 1879 correct 10050596 10051746 1 1152 CM091766.1 scf7180000182366 99.65 True CONTIG scf7180000182366 1166 correct CONTIG scf7180000182367 605 unaligned CONTIG scf7180000182368 361 unaligned CONTIG scf7180000182369 386 unaligned CONTIG scf7180000182370 382 unaligned CONTIG scf7180000182371 459 unaligned 1500574 1501106 1 533 CM091764.1 scf7180000182372 100.0 True CONTIG scf7180000182372 533 correct 15368767 15369775 1 993 CM091752.1 scf7180000182373 97.47 True CONTIG scf7180000182373 1015 correct CONTIG scf7180000182374 405 unaligned CONTIG scf7180000182375 986 unaligned 6462662 6463881 1380 159 CM091764.1 scf7180000182376 99.59 True CONTIG scf7180000182376 1383 correct 4316394 4317110 713 1 CM091768.1 scf7180000182377 97.35 True CONTIG scf7180000182377 713 correct CONTIG scf7180000182378 426 unaligned CONTIG scf7180000182379 316 unaligned CONTIG scf7180000182380 550 unaligned 59879 60585 16 723 CM091763.1 scf7180000182381 99.86 True CONTIG scf7180000182381 725 correct CONTIG scf7180000182382 535 unaligned CONTIG scf7180000182383 304 unaligned 11865318 11866235 1 918 CM091760.1 scf7180000182384 99.78 True translocation 7391726 7392855 921 2028 CM091755.1 scf7180000182384 96.64 True CONTIG scf7180000182384 2047 misassembled CONTIG scf7180000182385 471 unaligned CONTIG scf7180000182386 437 unaligned CONTIG scf7180000182388 353 unaligned 3696089 3698778 1 2692 CM091757.1 scf7180000182389 99.26 True CONTIG scf7180000182389 2692 correct 1071007 1071652 1 647 CM091768.1 scf7180000182390 98.92 True CONTIG scf7180000182390 794 correct 1731441 1732349 1 909 CM091755.1 scf7180000182391 100.0 True CONTIG scf7180000182391 995 correct 16660528 16661114 587 1 CM091752.1 scf7180000182392 98.81 True CONTIG scf7180000182392 587 correct CONTIG scf7180000182393 338 unaligned CONTIG scf7180000182394 448 unaligned 8529470 8530566 1104 1 CM091765.1 scf7180000182395 98.91 True CONTIG scf7180000182395 1104 correct CONTIG scf7180000182396 771 unaligned 3403700 3404801 1 1104 CM091751.1 scf7180000182397 99.64 True CONTIG scf7180000182397 1508 correct 10703011 10707145 1 4134 CM091765.1 scf7180000182398 99.93 True fake: scaffold gap size wrong estimation (local) 10708006 10721121 4522 17627 CM091765.1 scf7180000182398 99.87 True fake: scaffold gap size wrong estimation (local) 10721228 10725289 17741 21802 CM091765.1 scf7180000182398 100.0 True translocation 763838 766063 24021 21803 CM091759.1 scf7180000182398 98.65 True CONTIG scf7180000182398 24021 misassembled CONTIG scf7180000182399 354 unaligned 4293185 4293794 1 611 CM091768.1 scf7180000182400 98.85 True CONTIG scf7180000182400 619 correct 7212032 7213148 1 1117 CM091754.1 scf7180000182401 99.82 True translocation 4654651 4655852 2320 1118 CM091755.1 scf7180000182401 99.5 True CONTIG scf7180000182401 2320 misassembled CONTIG scf7180000182402 657 unaligned CONTIG scf7180000182403 4650 unaligned CONTIG scf7180000182404 335 unaligned 8435924 8437146 1223 1 CM091755.1 scf7180000182405 99.26 True CONTIG scf7180000182405 1266 correct 19906353 19907620 1275 1 CM091751.1 scf7180000182406 98.9 True CONTIG scf7180000182406 1275 correct CONTIG scf7180000182407 323 unaligned 9925481 9927154 1677 1 CM091761.1 scf7180000182408 98.11 True translocation 14108216 14109668 3130 1678 CM091760.1 scf7180000182408 99.59 True CONTIG scf7180000182408 3130 misassembled 7817458 7818297 1 839 CM091754.1 scf7180000182409 99.88 True CONTIG scf7180000182409 874 correct CONTIG scf7180000182410 302 unaligned CONTIG scf7180000182411 413 unaligned CONTIG scf7180000182412 553 unaligned 1363132 1363994 860 1 CM091756.1 scf7180000182413 98.96 True CONTIG scf7180000182413 890 correct 14029674 14030762 1090 1 CM091759.1 scf7180000182414 99.36 True CONTIG scf7180000182414 1106 correct 3794769 3795326 1 558 CM091754.1 scf7180000182415 100.0 True CONTIG scf7180000182415 656 correct 324825 325417 593 1 CM091760.1 scf7180000182416 100.0 True CONTIG scf7180000182416 593 correct CONTIG scf7180000182417 348 unaligned CONTIG scf7180000182418 481 unaligned 110985 111623 1 653 CM091764.1 scf7180000182419 98.89 True CONTIG scf7180000182419 653 correct CONTIG scf7180000182420 376 unaligned 8459226 8460877 1660 8 CM091759.1 scf7180000182421 99.88 True CONTIG scf7180000182421 1660 correct CONTIG scf7180000182422 308 unaligned 4538719 4540612 1882 1 CM091766.1 scf7180000182423 98.84 True CONTIG scf7180000182423 2197 correct 1118612 1119541 1 930 CM091752.1 scf7180000182424 99.57 True CONTIG scf7180000182424 982 correct 7752564 7753154 1 592 CM091761.1 scf7180000182425 99.49 True CONTIG scf7180000182425 740 correct CONTIG scf7180000182426 457 unaligned 18875492 18876017 1 526 CM091751.1 scf7180000182427 99.62 True CONTIG scf7180000182427 526 correct 128084 128778 1019 324 CM091761.1 scf7180000182428 99.14 True CONTIG scf7180000182428 1019 correct 976695 977822 1 1126 CM091761.1 scf7180000182429 99.82 True CONTIG scf7180000182429 1288 correct CONTIG scf7180000182430 356 unaligned 1425034 1425671 1 638 CM091755.1 scf7180000182431 99.84 True CONTIG scf7180000182431 638 correct CONTIG scf7180000182432 817 unaligned CONTIG scf7180000182433 315 unaligned CONTIG scf7180000182434 473 unaligned 7218436 7219605 8 1177 CM091751.1 scf7180000182435 99.83 True CONTIG scf7180000182435 1177 correct 17101398 17102078 681 1 CM091752.1 scf7180000182436 100.0 True CONTIG scf7180000182436 681 correct 2066108 2067038 1 931 CM091766.1 scf7180000182437 99.46 True translocation 13092934 13093820 1818 932 CM091756.1 scf7180000182437 99.55 True CONTIG scf7180000182437 1818 misassembled 8473364 8473966 1 604 CM091759.1 scf7180000182438 99.83 True CONTIG scf7180000182438 624 correct CONTIG scf7180000182439 353 unaligned 15593930 15594513 1 583 CM091752.1 scf7180000182440 98.12 True CONTIG scf7180000182440 600 correct CONTIG scf7180000182441 443 unaligned 5906667 5908105 1439 1 CM091768.1 scf7180000182442 100.0 True translocation 12587746 12588771 2465 1440 CM091755.1 scf7180000182442 99.81 True CONTIG scf7180000182442 2465 misassembled CONTIG scf7180000182443 484 unaligned 11093906 11095765 1860 1 CM091754.1 scf7180000182444 99.73 True CONTIG scf7180000182444 1869 correct 15723536 15724093 58 599 CM091752.1 scf7180000182445 95.16 True CONTIG scf7180000182445 599 correct 13023768 13025520 1753 1 CM091759.1 scf7180000182446 99.89 True CONTIG scf7180000182446 1978 correct 11745686 11746422 737 1 CM091761.1 scf7180000182447 100.0 True translocation 5243184 5244399 1953 738 CM091768.1 scf7180000182447 100.0 True CONTIG scf7180000182447 1953 misassembled 4145457 4146108 1 652 CM091757.1 scf7180000182448 100.0 True CONTIG scf7180000182448 685 correct 3233904 3235296 1394 1 CM091754.1 scf7180000182449 99.57 True CONTIG scf7180000182449 1451 correct 11339346 11340557 1326 115 CM091755.1 scf7180000182450 99.92 True CONTIG scf7180000182450 1326 correct 9972252 9973741 1489 1 CM091760.1 scf7180000182451 99.93 True relocation, inconsistency = 7888472 2083047 2083759 2222 1510 CM091760.1 scf7180000182451 100.0 True CONTIG scf7180000182451 2238 misassembled 14443854 14444619 766 1 CM091751.1 scf7180000182452 99.61 True CONTIG scf7180000182452 1160 correct 8103517 8104791 1 1269 CM091761.1 scf7180000182453 99.37 True CONTIG scf7180000182453 1608 correct CONTIG scf7180000182454 307 unaligned CONTIG scf7180000182455 312 unaligned 2946273 2946861 1 589 CM091768.1 scf7180000182456 100.0 True CONTIG scf7180000182456 589 correct 8140939 8143096 1 2198 CM091767.1 scf7180000182457 99.34 True fake: scaffold gap size wrong estimation (local) 8144819 8145450 3616 4247 CM091767.1 scf7180000182457 96.84 True fake: scaffold gap size wrong estimation (local) 8146389 8147037 4818 5466 CM091767.1 scf7180000182457 96.92 True indel: indel (<= 5bp) 8147039 8147826 5467 6254 CM091767.1 scf7180000182457 99.87 True relocation, scaffold gap is present, inconsistency = 8454 8156562 8158591 8565 6536 CM091767.1 scf7180000182457 100.0 True CONTIG scf7180000182457 8565 misassembled CONTIG scf7180000182458 503 unaligned 12639348 12640809 1 1463 CM091755.1 scf7180000182459 99.66 True CONTIG scf7180000182459 1485 correct CONTIG scf7180000182460 378 unaligned CONTIG scf7180000182461 715 unaligned CONTIG scf7180000182462 317 unaligned CONTIG scf7180000182463 368 unaligned CONTIG scf7180000182464 462 unaligned 6059477 6060369 1 893 CM091768.1 scf7180000182465 100.0 True CONTIG scf7180000182465 1028 correct 16324862 16326592 1731 1 CM091751.1 scf7180000182466 99.71 True CONTIG scf7180000182466 1769 correct 1190347 1190988 863 222 CM091753.1 scf7180000182467 100.0 True CONTIG scf7180000182467 863 correct 14543850 14544507 658 1 CM091758.1 scf7180000182468 99.54 True CONTIG scf7180000182468 754 correct 6923270 6924230 984 24 CM091762.1 scf7180000182469 99.69 True CONTIG scf7180000182469 1328 correct 37996 39675 1680 1 CM091756.1 scf7180000182470 99.94 True CONTIG scf7180000182470 1838 correct CONTIG scf7180000182471 591 unaligned 4122828 4123404 1 578 CM091754.1 scf7180000182472 99.31 True CONTIG scf7180000182472 611 correct CONTIG scf7180000182473 772 unaligned CONTIG scf7180000182474 346 unaligned CONTIG scf7180000182475 554 unaligned 1358668 1360483 1 1812 CM091756.1 scf7180000182476 99.06 True CONTIG scf7180000182476 1900 correct 3102535 3103668 1 1134 CM091766.1 scf7180000182477 99.56 True CONTIG scf7180000182477 1270 correct CONTIG scf7180000182478 396 unaligned 18411233 18412061 830 1 CM091751.1 scf7180000182479 99.4 True CONTIG scf7180000182479 1005 correct CONTIG scf7180000182480 426 unaligned CONTIG scf7180000182481 360 unaligned CONTIG scf7180000182482 311 unaligned CONTIG scf7180000182483 315 unaligned 16062286 16063693 50 1457 CM091758.1 scf7180000182484 100.0 True CONTIG scf7180000182484 1458 correct CONTIG scf7180000182485 312 unaligned 11337573 11338790 1 1218 CM091758.1 scf7180000182486 98.83 True CONTIG scf7180000182486 4804 correct_unaligned 11540594 11541374 1 781 CM091763.1 scf7180000182487 100.0 True CONTIG scf7180000182487 1068 correct CONTIG scf7180000182488 305 unaligned CONTIG scf7180000182489 301 unaligned 1834694 1835744 1051 1 CM091751.1 scf7180000182490 99.71 True CONTIG scf7180000182490 1082 correct 14637702 14638696 1 995 CM091758.1 scf7180000182491 100.0 True CONTIG scf7180000182491 1100 correct CONTIG scf7180000182492 355 unaligned 14590193 14590914 89 809 CM091751.1 scf7180000182493 99.31 True CONTIG scf7180000182493 809 correct CONTIG scf7180000182494 328 unaligned CONTIG scf7180000182495 301 unaligned CONTIG scf7180000182496 399 unaligned CONTIG scf7180000182497 362 unaligned 15434322 15435624 1303 1 CM091757.1 scf7180000182498 100.0 True CONTIG scf7180000182498 1453 correct 2092797 2094652 1856 1 CM091752.1 scf7180000182499 99.89 True translocation 5369984 5370805 2678 1857 CM091764.1 scf7180000182499 100.0 True CONTIG scf7180000182499 2678 misassembled 10027670 10028245 575 1 CM091756.1 scf7180000182500 98.44 True CONTIG scf7180000182500 579 correct CONTIG scf7180000182501 393 unaligned 1435870 1437089 1223 1 CM091762.1 scf7180000182502 99.51 True CONTIG scf7180000182502 1297 correct CONTIG scf7180000182503 307 unaligned 4543043 4544799 1757 1 CM091762.1 scf7180000182504 99.54 True CONTIG scf7180000182504 1813 correct 7752564 7753154 1 592 CM091761.1 scf7180000182505 99.49 True translocation 5875708 5877139 2035 604 CM091764.1 scf7180000182505 99.93 True CONTIG scf7180000182505 2047 misassembled 7939385 7940813 1 1407 CM091762.1 scf7180000182506 97.69 True CONTIG scf7180000182506 1499 correct 13298548 13300267 14 1754 CM091751.1 scf7180000182507 98.16 True CONTIG scf7180000182507 1754 correct CONTIG scf7180000182508 303 unaligned CONTIG scf7180000182509 392 unaligned 4911330 4911952 623 1 CM091768.1 scf7180000182510 100.0 True CONTIG scf7180000182510 623 correct 1380889 1381564 1 676 CM091755.1 scf7180000182511 99.85 True CONTIG scf7180000182511 688 correct 4634701 4635637 937 1 CM091758.1 scf7180000182512 99.89 True translocation 7283053 7283766 1651 938 CM091759.1 scf7180000182512 99.59 True CONTIG scf7180000182512 1651 misassembled CONTIG scf7180000182513 343 unaligned CONTIG scf7180000182514 363 unaligned CONTIG scf7180000182515 363 unaligned CONTIG scf7180000182516 370 unaligned CONTIG scf7180000182517 307 unaligned 4223169 4224727 1 1566 CM091755.1 scf7180000182518 98.85 True CONTIG scf7180000182518 1608 correct CONTIG scf7180000182519 356 unaligned 8625604 8626578 975 1 CM091764.1 scf7180000182520 99.79 True CONTIG scf7180000182520 1033 correct CONTIG scf7180000182521 3216 unaligned 279768 281026 1 1260 CM091762.1 scf7180000182522 98.89 True CONTIG scf7180000182522 1338 correct CONTIG scf7180000182523 493 unaligned 6406362 6406939 567 1 CM091751.1 scf7180000182524 97.92 True CONTIG scf7180000182524 651 correct CONTIG scf7180000182525 471 unaligned CONTIG scf7180000182526 551 unaligned CONTIG scf7180000182527 517 unaligned 12743739 12744849 1 1111 CM091757.1 scf7180000182528 99.91 True relocation, inconsistency = 12588337 154729 155401 1784 1112 CM091757.1 scf7180000182528 100.0 True CONTIG scf7180000182528 1784 misassembled CONTIG scf7180000182529 366 unaligned CONTIG scf7180000182530 377 unaligned CONTIG scf7180000182531 460 unaligned CONTIG scf7180000182532 446 unaligned CONTIG scf7180000182533 392 unaligned CONTIG scf7180000182534 454 unaligned 96262 98991 2747 18 CM091760.1 scf7180000182535 99.96 True CONTIG scf7180000182535 2772 correct 6397965 6398475 1 511 CM091768.1 scf7180000182536 100.0 True CONTIG scf7180000182536 511 correct CONTIG scf7180000182537 341 unaligned CONTIG scf7180000182538 461 unaligned CONTIG scf7180000182539 431 unaligned CONTIG scf7180000182540 300 unaligned CONTIG scf7180000182541 405 unaligned 6285659 6286367 709 1 CM091768.1 scf7180000182542 100.0 True CONTIG scf7180000182542 709 correct CONTIG scf7180000182543 305 unaligned CONTIG scf7180000182544 339 unaligned 2063405 2064245 842 1 CM091763.1 scf7180000182545 98.93 True CONTIG scf7180000182545 842 correct CONTIG scf7180000182546 511 unaligned CONTIG scf7180000182547 322 unaligned 13585981 13586661 681 1 CM091753.1 scf7180000182548 98.83 True CONTIG scf7180000182548 681 correct CONTIG scf7180000182549 383 unaligned CONTIG scf7180000182550 538 unaligned CONTIG scf7180000182551 408 unaligned 13960709 13962209 2047 540 CM091753.1 scf7180000182552 99.07 True CONTIG scf7180000182552 2047 correct 4501315 4501816 229 730 CM091768.1 scf7180000182553 100.0 True CONTIG scf7180000182553 730 correct 313068 313802 1 735 CM091752.1 scf7180000182554 99.73 True CONTIG scf7180000182554 802 correct CONTIG scf7180000182555 476 unaligned 4294143 4295281 1139 1 CM091758.1 scf7180000182556 99.91 True CONTIG scf7180000182556 1168 correct 14962253 14963544 1292 1 CM091758.1 scf7180000182557 99.69 True CONTIG scf7180000182557 1319 correct 7551576 7552398 823 1 CM091767.1 scf7180000182558 100.0 True CONTIG scf7180000182558 1069 correct 10965751 10967086 1 1336 CM091766.1 scf7180000182559 99.55 True CONTIG scf7180000182559 1376 correct CONTIG scf7180000182560 448 unaligned CONTIG scf7180000182561 341 unaligned 13996968 13998792 1827 1 CM091757.1 scf7180000182562 99.45 True CONTIG scf7180000182562 1827 correct CONTIG scf7180000182563 1051 unaligned 3603878 3605836 1959 1 CM091768.1 scf7180000182564 100.0 True CONTIG scf7180000182564 2003 correct 10063536 10064931 1 1393 CM091755.1 scf7180000182565 99.71 True CONTIG scf7180000182565 1437 correct CONTIG scf7180000182566 330 unaligned 5034689 5035332 1 644 CM091761.1 scf7180000182567 99.69 True CONTIG scf7180000182567 813 correct 9559566 9560099 534 1 CM091767.1 scf7180000182568 99.81 True CONTIG scf7180000182568 534 correct CONTIG scf7180000182569 441 unaligned CONTIG scf7180000182570 332 unaligned CONTIG scf7180000182571 494 unaligned CONTIG scf7180000182572 365 unaligned CONTIG scf7180000182573 479 unaligned CONTIG scf7180000182574 450 unaligned CONTIG scf7180000182575 305 unaligned 13477487 13478180 19 712 CM091753.1 scf7180000182576 99.86 True CONTIG scf7180000182576 778 correct CONTIG scf7180000182577 313 unaligned CONTIG scf7180000182578 417 unaligned CONTIG scf7180000182579 435 unaligned CONTIG scf7180000182580 345 unaligned CONTIG scf7180000182581 309 unaligned CONTIG scf7180000182582 446 unaligned CONTIG scf7180000182583 353 unaligned CONTIG scf7180000182584 352 unaligned CONTIG scf7180000182585 449 unaligned CONTIG scf7180000182586 442 unaligned CONTIG scf7180000182587 310 unaligned 14231935 14233629 1695 1 CM091754.1 scf7180000182588 99.94 True CONTIG scf7180000182588 1706 correct CONTIG scf7180000182589 456 unaligned CONTIG scf7180000182590 394 unaligned 7506664 7507876 405 1616 CM091757.1 scf7180000182591 99.26 True CONTIG scf7180000182591 1616 correct CONTIG scf7180000182592 324 unaligned CONTIG scf7180000182593 311 unaligned CONTIG scf7180000182594 536 unaligned 2116646 2117971 1 1326 CM091760.1 scf7180000182595 99.85 True CONTIG scf7180000182595 1343 correct CONTIG scf7180000182596 304 unaligned CONTIG scf7180000182597 517 unaligned CONTIG scf7180000182598 444 unaligned 1036612 1037480 148 1016 CM091764.1 scf7180000182599 100.0 True CONTIG scf7180000182599 1016 correct CONTIG scf7180000182600 857 unaligned 638282 639670 1 1389 CM091766.1 scf7180000182601 99.93 True CONTIG scf7180000182601 1402 correct 13332966 13333934 971 1 CM091759.1 scf7180000182602 99.38 True CONTIG scf7180000182602 1023 correct 2518413 2519782 35 1404 CM091765.1 scf7180000182603 99.78 True CONTIG scf7180000182603 1404 correct CONTIG scf7180000182604 349 unaligned CONTIG scf7180000182605 420 unaligned CONTIG scf7180000182606 375 unaligned CONTIG scf7180000182607 339 unaligned CONTIG scf7180000182608 334 unaligned CONTIG scf7180000182609 404 unaligned CONTIG scf7180000182610 670 unaligned CONTIG scf7180000182611 348 unaligned CONTIG scf7180000182612 413 unaligned CONTIG scf7180000182613 365 unaligned CONTIG scf7180000182614 438 unaligned CONTIG scf7180000182615 317 unaligned CONTIG scf7180000182616 373 unaligned CONTIG scf7180000182617 373 unaligned CONTIG scf7180000182618 398 unaligned CONTIG scf7180000182619 413 unaligned CONTIG scf7180000182620 442 unaligned 8596091 8596717 627 1 CM091767.1 scf7180000182621 99.68 True CONTIG scf7180000182621 645 correct CONTIG scf7180000182622 468 unaligned CONTIG scf7180000182623 325 unaligned CONTIG scf7180000182624 568 unaligned CONTIG scf7180000182625 376 unaligned 198781 200580 1 1800 CM091751.1 scf7180000182626 99.89 True CONTIG scf7180000182626 1963 correct 20002314 20004101 1 1790 CM091751.1 scf7180000182627 99.39 True CONTIG scf7180000182627 1812 correct 16598270 16599678 1 1409 CM091756.1 scf7180000182628 99.93 True CONTIG scf7180000182628 1480 correct 3701993 3702514 6 527 CM091768.1 scf7180000182629 99.23 True CONTIG scf7180000182629 527 correct 8334832 8335376 977 433 CM091767.1 scf7180000182630 100.0 True CONTIG scf7180000182630 977 correct CONTIG scf7180000182631 323 unaligned 1842505 1843789 1 1285 CM091765.1 scf7180000182632 99.77 True translocation 3169961 3170614 1286 1940 CM091766.1 scf7180000182632 99.56 True CONTIG scf7180000182632 1940 misassembled CONTIG scf7180000182633 397 unaligned CONTIG scf7180000182634 413 unaligned CONTIG scf7180000182635 454 unaligned 4905225 4906426 1 1198 CM091753.1 scf7180000182636 99.67 True CONTIG scf7180000182636 1365 correct 8733951 8735173 1223 1 CM091755.1 scf7180000182637 99.92 True CONTIG scf7180000182637 1551 correct 7135509 7137026 1518 1 CM091758.1 scf7180000182638 99.41 True CONTIG scf7180000182638 1680 correct CONTIG scf7180000182639 551 unaligned CONTIG scf7180000182640 382 unaligned CONTIG scf7180000182641 304 unaligned 12886708 12887592 885 1 CM091754.1 scf7180000182642 99.32 True CONTIG scf7180000182642 994 correct 3582192 3583908 324 2047 CM091755.1 scf7180000182643 99.01 True CONTIG scf7180000182643 2047 correct 6316202 6316816 615 1 CM091767.1 scf7180000182644 99.35 True CONTIG scf7180000182644 661 correct 3864345 3865901 1539 1 CM091759.1 scf7180000182645 98.14 True CONTIG scf7180000182645 1620 correct 5303170 5304219 1 1050 CM091768.1 scf7180000182646 100.0 True CONTIG scf7180000182646 1184 correct 6711567 6712075 1 509 CM091768.1 scf7180000182647 97.84 True CONTIG scf7180000182647 509 correct CONTIG scf7180000182648 526 unaligned CONTIG scf7180000182649 316 unaligned CONTIG scf7180000182650 324 unaligned CONTIG scf7180000182651 436 unaligned 6142862 6147839 4978 1 CM091768.1 scf7180000182652 100.0 True CONTIG scf7180000182652 4978 correct CONTIG scf7180000182653 309 unaligned CONTIG scf7180000182654 315 unaligned 8625602 8626560 959 1 CM091764.1 scf7180000182655 99.79 True CONTIG scf7180000182655 1039 correct CONTIG scf7180000182656 367 unaligned CONTIG scf7180000182657 338 unaligned CONTIG scf7180000182658 438 unaligned CONTIG scf7180000182659 312 unaligned CONTIG scf7180000182660 404 unaligned CONTIG scf7180000182661 357 unaligned CONTIG scf7180000182662 411 unaligned CONTIG scf7180000182663 300 unaligned CONTIG scf7180000182664 386 unaligned 6030712 6031634 1135 211 CM091759.1 scf7180000182665 99.46 True CONTIG scf7180000182665 1135 correct CONTIG scf7180000182666 389 unaligned 9077447 9077989 552 10 CM091755.1 scf7180000182667 99.63 True CONTIG scf7180000182667 681 correct CONTIG scf7180000182668 316 unaligned 14629365 14630226 1348 487 CM091751.1 scf7180000182669 99.88 True CONTIG scf7180000182669 1348 correct CONTIG scf7180000182670 389 unaligned 14063044 14063850 807 1 CM091755.1 scf7180000182671 99.75 True CONTIG scf7180000182671 885 correct CONTIG scf7180000182672 419 unaligned CONTIG scf7180000182673 309 unaligned CONTIG scf7180000182674 327 unaligned 4905225 4906426 1 1198 CM091753.1 scf7180000182675 99.67 True CONTIG scf7180000182675 1271 correct CONTIG scf7180000182676 349 unaligned CONTIG scf7180000182677 435 unaligned CONTIG scf7180000182678 460 unaligned CONTIG scf7180000182679 304 unaligned CONTIG scf7180000182680 344 unaligned 40907 41493 588 1 CM091752.1 scf7180000182681 98.81 True CONTIG scf7180000182681 588 correct CONTIG scf7180000182682 305 unaligned CONTIG scf7180000182683 385 unaligned 15370798 15372264 69 1535 CM091757.1 scf7180000182684 100.0 True CONTIG scf7180000182684 1535 correct CONTIG scf7180000182685 335 unaligned CONTIG scf7180000182686 439 unaligned 6470135 6471713 1 1579 CM091759.1 scf7180000182687 99.87 True CONTIG scf7180000182687 1660 correct 2162100 2162792 22 716 CM091768.1 scf7180000182688 98.85 True translocation 93135 94368 2047 813 CM091757.1 scf7180000182688 99.76 True CONTIG scf7180000182688 2047 misassembled CONTIG scf7180000182689 483 unaligned 6123245 6124698 1454 1 CM091758.1 scf7180000182690 99.79 True translocation 8238847 8240239 2847 1455 CM091755.1 scf7180000182690 100.0 True CONTIG scf7180000182690 2847 misassembled 2791987 2793343 1 1357 CM091752.1 scf7180000182691 99.85 True CONTIG scf7180000182691 1439 correct CONTIG scf7180000182692 348 unaligned 959564 960796 1245 3 CM091752.1 scf7180000182693 99.03 True CONTIG scf7180000182693 1318 correct CONTIG scf7180000182694 339 unaligned CONTIG scf7180000182695 362 unaligned 1332010 1333432 1 1423 CM091755.1 scf7180000182696 100.0 True CONTIG scf7180000182696 1424 correct 163300 164505 1206 1 CM091763.1 scf7180000182697 99.83 True CONTIG scf7180000182697 1206 correct CONTIG scf7180000182698 435 unaligned CONTIG scf7180000182699 302 unaligned CONTIG scf7180000182700 311 unaligned CONTIG scf7180000182701 342 unaligned CONTIG scf7180000182702 422 unaligned CONTIG scf7180000182703 396 unaligned CONTIG scf7180000182704 331 unaligned CONTIG scf7180000182705 347 unaligned 3684026 3684853 828 1 CM091758.1 scf7180000182706 99.52 True CONTIG scf7180000182706 1094 correct CONTIG scf7180000182707 305 unaligned CONTIG scf7180000182708 385 unaligned CONTIG scf7180000182709 358 unaligned CONTIG scf7180000182710 335 unaligned CONTIG scf7180000182711 407 unaligned CONTIG scf7180000182712 314 unaligned CONTIG scf7180000182713 347 unaligned CONTIG scf7180000182714 313 unaligned CONTIG scf7180000182715 416 unaligned CONTIG scf7180000182716 380 unaligned CONTIG scf7180000182717 343 unaligned CONTIG scf7180000182718 341 unaligned CONTIG scf7180000182719 512 unaligned 10260270 10261567 1 1297 CM091754.1 scf7180000182720 99.31 True CONTIG scf7180000182720 1300 correct CONTIG scf7180000182721 507 unaligned CONTIG scf7180000182722 470 unaligned 13786816 13788226 1 1410 CM091760.1 scf7180000182723 99.43 True CONTIG scf7180000182723 1427 correct CONTIG scf7180000182724 412 unaligned 8498873 8500685 1817 1 CM091759.1 scf7180000182725 99.17 True CONTIG scf7180000182725 1869 correct 7859759 7860361 603 1 CM091767.1 scf7180000182726 99.67 True CONTIG scf7180000182726 675 correct 8841553 8842229 1 677 CM091754.1 scf7180000182727 100.0 True CONTIG scf7180000182727 701 correct CONTIG scf7180000182728 588 unaligned 8321581 8322309 1 731 CM091755.1 scf7180000182729 99.18 True translocation 1499549 1500343 748 1544 CM091754.1 scf7180000182729 99.25 True CONTIG scf7180000182729 1544 misassembled CONTIG scf7180000182730 406 unaligned 331284 334805 3 3525 CM091761.1 scf7180000182731 99.74 True fake: scaffold gap size wrong estimation (local) 335734 336620 4360 5247 CM091761.1 scf7180000182731 99.44 True CONTIG scf7180000182731 5256 correct CONTIG scf7180000182732 343 unaligned CONTIG scf7180000182733 356 unaligned CONTIG scf7180000182734 357 unaligned CONTIG scf7180000182735 401 unaligned CONTIG scf7180000182736 352 unaligned 6328224 6329656 194 1664 CM091768.1 scf7180000182737 96.6 True relocation, inconsistency = 103457 6433114 6433624 1665 2173 CM091768.1 scf7180000182737 97.95 True CONTIG scf7180000182737 2173 misassembled 13689085 13690863 1829 52 CM091758.1 scf7180000182738 99.94 True CONTIG scf7180000182738 1835 correct CONTIG scf7180000182739 496 unaligned CONTIG scf7180000182740 316 unaligned CONTIG scf7180000182741 335 unaligned CONTIG scf7180000182742 338 unaligned CONTIG scf7180000182743 374 unaligned 8449877 8450579 702 1 CM091751.1 scf7180000182744 99.29 True CONTIG scf7180000182744 719 correct CONTIG scf7180000182745 301 unaligned CONTIG scf7180000182746 350 unaligned CONTIG scf7180000182747 340 unaligned CONTIG scf7180000182748 354 unaligned 16356582 16357187 2477 3082 CM091752.1 scf7180000182749 98.51 True CONTIG scf7180000182749 3082 correct CONTIG scf7180000182750 427 unaligned CONTIG scf7180000182751 407 unaligned CONTIG scf7180000182752 311 unaligned CONTIG scf7180000182753 327 unaligned CONTIG scf7180000182754 327 unaligned CONTIG scf7180000182755 405 unaligned CONTIG scf7180000182756 309 unaligned CONTIG scf7180000182757 333 unaligned 3407322 3407935 411 1027 CM091754.1 scf7180000182758 97.59 True CONTIG scf7180000182758 1027 correct CONTIG scf7180000182759 309 unaligned 52836 54323 69 1550 CM091763.1 scf7180000182760 99.51 True CONTIG scf7180000182760 1550 correct CONTIG scf7180000182761 325 unaligned CONTIG scf7180000182762 396 unaligned CONTIG scf7180000182763 426 unaligned CONTIG scf7180000182764 364 unaligned CONTIG scf7180000182765 332 unaligned CONTIG scf7180000182766 320 unaligned CONTIG scf7180000182767 301 unaligned CONTIG scf7180000182768 349 unaligned CONTIG scf7180000182769 342 unaligned 8925111 8926226 1194 78 CM091764.1 scf7180000182770 99.73 True CONTIG scf7180000182770 1194 correct CONTIG scf7180000182771 317 unaligned 1893979 1895016 1038 1 CM091753.1 scf7180000182772 100.0 True CONTIG scf7180000182772 1071 correct CONTIG scf7180000182773 352 unaligned 17367341 17367997 657 1 CM091753.1 scf7180000182774 99.7 True CONTIG scf7180000182774 666 correct CONTIG scf7180000182775 320 unaligned CONTIG scf7180000182776 324 unaligned 9871206 9872690 1486 1 CM091760.1 scf7180000182777 99.26 True CONTIG scf7180000182777 1497 correct CONTIG scf7180000182778 314 unaligned 9232159 9233831 1 1673 CM091759.1 scf7180000182779 99.94 True CONTIG scf7180000182779 1737 correct CONTIG scf7180000182780 340 unaligned CONTIG scf7180000182781 662 unaligned CONTIG scf7180000182782 329 unaligned CONTIG scf7180000182783 369 unaligned CONTIG scf7180000182784 335 unaligned 7026391 7027020 630 1 CM091764.1 scf7180000182785 99.84 True CONTIG scf7180000182785 650 correct 7264189 7265216 1029 1 CM091763.1 scf7180000182786 99.81 True CONTIG scf7180000182786 1144 correct 6252198 6252775 1 578 CM091760.1 scf7180000182787 99.65 True CONTIG scf7180000182787 768 correct 3610462 3611068 1 608 CM091757.1 scf7180000182788 99.34 True CONTIG scf7180000182788 686 correct CONTIG scf7180000182789 450 unaligned CONTIG scf7180000182790 336 unaligned CONTIG scf7180000182791 321 unaligned CONTIG scf7180000182792 428 unaligned CONTIG scf7180000182793 323 unaligned CONTIG scf7180000182794 300 unaligned CONTIG scf7180000182795 311 unaligned 3835358 3843952 31 8643 CM091766.1 scf7180000182796 99.42 True fake: scaffold gap size wrong estimation (local) 3844269 3914034 8753 78232 CM091766.1 scf7180000182796 98.85 True CONTIG scf7180000182796 78232 correct CONTIG scf7180000182797 368 unaligned CONTIG scf7180000182798 722 unaligned 4738923 4739500 579 2 CM091768.1 scf7180000182799 100.0 True CONTIG scf7180000182799 579 correct CONTIG scf7180000182800 378 unaligned CONTIG scf7180000182801 363 unaligned CONTIG scf7180000182802 336 unaligned 8722320 8722858 614 76 CM091752.1 scf7180000182803 100.0 True translocation, scaffold gap is present 6550142 6550815 2415 3088 CM091759.1 scf7180000182803 97.03 True CONTIG scf7180000182803 3196 misassembled 8799667 8800217 1 551 CM091767.1 scf7180000182804 99.82 True CONTIG scf7180000182804 551 correct CONTIG scf7180000182805 370 unaligned CONTIG scf7180000182806 348 unaligned CONTIG scf7180000182807 408 unaligned 11627796 11628444 1 652 CM091760.1 scf7180000182808 99.08 True CONTIG scf7180000182808 681 correct 4762903 4764036 1 1139 CM091754.1 scf7180000182809 99.72 True fake: scaffold gap size wrong estimation (local) 4764929 4769546 1989 6606 CM091754.1 scf7180000182809 100.0 True CONTIG scf7180000182809 6606 correct CONTIG scf7180000182810 305 unaligned CONTIG scf7180000182811 306 unaligned CONTIG scf7180000182812 772 unaligned CONTIG scf7180000182813 350 unaligned CONTIG scf7180000182814 313 unaligned CONTIG scf7180000182815 303 unaligned CONTIG scf7180000182816 308 unaligned CONTIG scf7180000182817 364 unaligned CONTIG scf7180000182818 361 unaligned 9779120 9779956 71 907 CM091760.1 scf7180000182819 100.0 True CONTIG scf7180000182819 907 correct CONTIG scf7180000182820 380 unaligned 7885508 7886076 1 568 CM091764.1 scf7180000182821 99.82 True CONTIG scf7180000182821 600 correct CONTIG scf7180000182822 337 unaligned CONTIG scf7180000182823 307 unaligned CONTIG scf7180000182824 319 unaligned CONTIG scf7180000182825 317 unaligned CONTIG scf7180000182826 313 unaligned 5010448 5011188 1 741 CM091754.1 scf7180000182827 100.0 True translocation 14146276 14147582 2047 742 CM091758.1 scf7180000182827 98.78 True CONTIG scf7180000182827 2047 misassembled CONTIG scf7180000182828 303 unaligned 4128668 4129767 1 1100 CM091764.1 scf7180000182829 99.73 True CONTIG scf7180000182829 1312 correct CONTIG scf7180000182830 318 unaligned CONTIG scf7180000182831 303 unaligned 3792765 3793304 1 540 CM091765.1 scf7180000182832 100.0 True CONTIG scf7180000182832 557 correct 11476554 11477076 1 523 CM091762.1 scf7180000182833 100.0 True CONTIG scf7180000182833 524 correct CONTIG scf7180000182834 489 unaligned CONTIG scf7180000182835 305 unaligned CONTIG scf7180000182836 369 unaligned CONTIG scf7180000182837 315 unaligned CONTIG scf7180000182838 347 unaligned CONTIG scf7180000182839 331 unaligned CONTIG scf7180000182840 442 unaligned CONTIG scf7180000182841 314 unaligned CONTIG scf7180000182842 344 unaligned CONTIG scf7180000182843 494 unaligned CONTIG scf7180000182844 333 unaligned CONTIG scf7180000182845 341 unaligned CONTIG scf7180000182846 329 unaligned 6466949 6467631 683 1 CM091764.1 scf7180000182847 99.85 True CONTIG scf7180000182847 743 correct 3209825 3211184 1360 1 CM091753.1 scf7180000182848 99.85 True translocation 7809958 7811155 1361 2558 CM091757.1 scf7180000182848 99.83 True CONTIG scf7180000182848 2558 misassembled 6663048 6663619 1 572 CM091760.1 scf7180000182849 100.0 True CONTIG scf7180000182849 614 correct CONTIG scf7180000182850 300 unaligned 3602375 3603273 1 899 CM091768.1 scf7180000182851 100.0 True CONTIG scf7180000182851 1379 correct 8445680 8446245 1 566 CM091762.1 scf7180000182852 100.0 True CONTIG scf7180000182852 614 correct 363126 364647 1 1522 CM091758.1 scf7180000182853 99.87 True CONTIG scf7180000182853 1547 correct 4617041 4617575 1 535 CM091754.1 scf7180000182854 100.0 True CONTIG scf7180000182854 595 correct 1187245 1188069 825 1 CM091752.1 scf7180000182855 99.15 True CONTIG scf7180000182855 893 correct 5940571 5941304 734 1 CM091764.1 scf7180000182856 100.0 True CONTIG scf7180000182856 771 correct 9535846 9537257 1418 1 CM091755.1 scf7180000182857 98.66 True CONTIG scf7180000182857 1458 correct CONTIG scf7180000182858 308 unaligned 8528443 8529052 675 66 CM091765.1 scf7180000182859 99.67 True CONTIG scf7180000182859 675 correct 1584139 1585317 1201 1 CM091764.1 scf7180000182860 99.66 True CONTIG scf7180000182860 1201 correct 1757079 1757786 704 1 CM091752.1 scf7180000182861 99.15 True CONTIG scf7180000182861 704 correct 9073949 9074609 662 1 CM091761.1 scf7180000182862 99.85 True CONTIG scf7180000182862 727 correct 1311273 1312065 1 793 CM091755.1 scf7180000182863 100.0 True translocation 1214237 1215251 794 1807 CM091757.1 scf7180000182863 99.41 True CONTIG scf7180000182863 1807 misassembled 14985070 14985656 606 18 CM091751.1 scf7180000182864 99.15 True CONTIG scf7180000182864 716 correct CONTIG scf7180000182865 340 unaligned 115075 115799 725 1 CM091756.1 scf7180000182866 99.86 True CONTIG scf7180000182866 733 correct 4105574 4106414 1 852 CM091768.1 scf7180000182867 99.63 True CONTIG scf7180000182867 852 correct 11450912 11452395 1485 1 CM091761.1 scf7180000182868 99.8 True CONTIG scf7180000182868 1495 correct CONTIG scf7180000182869 349 unaligned CONTIG scf7180000182871 344 unaligned 14280599 14281660 1062 1 CM091758.1 scf7180000182872 99.91 True CONTIG scf7180000182872 1099 correct 16314626 16316263 1639 1 CM091754.1 scf7180000182873 99.63 True CONTIG scf7180000182873 1647 correct CONTIG scf7180000182874 375 unaligned CONTIG scf7180000182875 392 unaligned 2229072 2230047 9 985 CM091762.1 scf7180000182876 99.8 True CONTIG scf7180000182876 1010 correct 13933907 13935564 1692 27 CM091754.1 scf7180000182877 98.92 True CONTIG scf7180000182877 1747 correct CONTIG scf7180000182878 316 unaligned CONTIG scf7180000182879 361 unaligned 11529625 11530746 1122 1 CM091759.1 scf7180000182880 99.73 True CONTIG scf7180000182880 1146 correct 3371265 3372590 1326 1 CM091751.1 scf7180000182881 99.85 True CONTIG scf7180000182881 1355 correct CONTIG scf7180000182882 595 unaligned CONTIG scf7180000182883 399 unaligned 7815980 7816648 1 671 CM091759.1 scf7180000182884 99.7 True CONTIG scf7180000182884 728 correct 6496135 6496952 1 821 CM091755.1 scf7180000182885 99.15 True CONTIG scf7180000182885 829 correct 8595204 8595876 1 703 CM091767.1 scf7180000182886 98.54 True CONTIG scf7180000182886 707 correct CONTIG scf7180000182887 330 unaligned 7053378 7054760 2 1384 CM091761.1 scf7180000182888 99.86 True CONTIG scf7180000182888 1411 correct 8734771 8736372 1 1602 CM091756.1 scf7180000182889 99.81 True translocation 2834031 2835542 3121 1610 CM091765.1 scf7180000182889 100.0 True CONTIG scf7180000182889 3121 misassembled 4609006 4609508 1 504 CM091757.1 scf7180000182890 99.6 True CONTIG scf7180000182890 533 correct 3625632 3628354 1 2726 CM091765.1 scf7180000182891 99.34 True CONTIG scf7180000182891 2726 correct 18252106 18252746 12 651 CM091751.1 scf7180000182892 97.66 True CONTIG scf7180000182892 851 correct 8282501 8284183 1 1687 CM091763.1 scf7180000182893 99.76 True CONTIG scf7180000182893 1908 correct 5986276 5988106 1 1832 CM091751.1 scf7180000182894 99.4 True CONTIG scf7180000182894 1998 correct 8755035 8755891 857 1 CM091756.1 scf7180000182895 100.0 True relocation, inconsistency = 7807 8746080 8747227 2005 858 CM091756.1 scf7180000182895 99.65 True CONTIG scf7180000182895 2005 misassembled 14339858 14340375 30 547 CM091757.1 scf7180000182896 100.0 True CONTIG scf7180000182896 547 correct 7576782 7578217 1459 33 CM091762.1 scf7180000182897 98.89 True CONTIG scf7180000182897 1547 correct 14917337 14918618 1 1250 CM091751.1 scf7180000182898 95.82 True translocation 4155589 4157383 1273 3069 CM091767.1 scf7180000182898 99.67 True CONTIG scf7180000182898 3069 misassembled 8627833 8629567 1733 1 CM091753.1 scf7180000182899 99.54 True translocation 5815023 5816189 1734 2901 CM091763.1 scf7180000182899 99.5 True CONTIG scf7180000182899 2901 misassembled 5403807 5405048 1242 1 CM091767.1 scf7180000182900 100.0 True CONTIG scf7180000182900 1331 correct 10059818 10060352 524 1 CM091764.1 scf7180000182901 96.07 True CONTIG scf7180000182901 719 correct 11846429 11849514 3072 1 CM091756.1 scf7180000182902 99.22 True CONTIG scf7180000182902 3072 correct 11829168 11830984 1816 1 CM091756.1 scf7180000182903 99.18 True translocation 3841781 3843068 1817 3104 CM091758.1 scf7180000182903 99.62 True CONTIG scf7180000182903 3104 misassembled 5177999 5179890 1 1891 CM091765.1 scf7180000182904 99.31 True CONTIG scf7180000182904 2330 correct 11038039 11039994 1950 1 CM091759.1 scf7180000182905 99.23 True CONTIG scf7180000182905 2196 correct 5986805 5988386 1 1565 CM091762.1 scf7180000182906 97.36 True CONTIG scf7180000182906 1668 correct 734254 735976 1725 1 CM091765.1 scf7180000182907 99.54 True translocation 8947850 8949212 3090 1726 CM091764.1 scf7180000182907 99.57 True CONTIG scf7180000182907 3090 misassembled 5235601 5236644 1064 21 CM091755.1 scf7180000182908 100.0 True CONTIG scf7180000182908 1064 correct 3545414 3547322 1909 1 CM091765.1 scf7180000182909 100.0 True relocation, inconsistency = 1380147 4927470 4928213 1910 2657 CM091765.1 scf7180000182909 98.84 True CONTIG scf7180000182909 2657 misassembled 5219810 5220830 1224 202 CM091766.1 scf7180000182910 99.32 True CONTIG scf7180000182910 1224 correct 5239164 5240708 1579 33 CM091761.1 scf7180000182911 98.9 True CONTIG scf7180000182911 1698 correct 4413652 4418729 1 5079 CM091758.1 scf7180000182912 99.9 True CONTIG scf7180000182912 5079 correct 4417708 4422072 1 4368 CM091758.1 scf7180000182913 99.91 True CONTIG scf7180000182913 4368 correct 528885 529809 939 14 CM091762.1 scf7180000182914 99.68 True translocation 7035595 7036691 940 2037 CM091760.1 scf7180000182914 99.73 True CONTIG scf7180000182914 2047 misassembled 5403798 5405048 1251 1 CM091767.1 scf7180000182915 100.0 True CONTIG scf7180000182915 1423 correct CONTIG scf7180000182916 306 unaligned 5959659 5960902 6 1252 CM091756.1 scf7180000182917 99.28 True CONTIG scf7180000182917 1609 correct CONTIG scf7180000182918 511 unaligned 10393711 10395000 1290 1 CM091755.1 scf7180000182919 99.92 True CONTIG scf7180000182919 1405 correct 9020228 9022063 1 1839 CM091758.1 scf7180000182920 99.08 True translocation 13614161 13615388 1869 3096 CM091753.1 scf7180000182920 99.43 True CONTIG scf7180000182920 3096 misassembled 5878856 5880173 1 1318 CM091754.1 scf7180000182921 99.92 True CONTIG scf7180000182921 1454 correct 8161142 8162393 1252 1 CM091765.1 scf7180000182922 99.92 True CONTIG scf7180000182922 1314 correct 371575 372230 656 1 CM091762.1 scf7180000182923 100.0 True CONTIG scf7180000182923 872 correct 9925390 9926751 1 1362 CM091756.1 scf7180000182924 99.71 True CONTIG scf7180000182924 1527 correct CONTIG scf7180000182925 484 unaligned CONTIG scf7180000182926 469 unaligned CONTIG scf7180000182927 313 unaligned 10483108 10484877 1 1770 CM091755.1 scf7180000182928 99.77 True CONTIG scf7180000182928 2261 correct CONTIG scf7180000182929 522 unaligned 8006368 8006892 525 1 CM091764.1 scf7180000182930 100.0 True translocation 5666645 5667645 1534 534 CM091762.1 scf7180000182930 99.7 True CONTIG scf7180000182930 1534 misassembled 632548 634431 1885 1 CM091757.1 scf7180000182931 99.73 True translocation 16087494 16088723 3115 1886 CM091754.1 scf7180000182931 99.68 True CONTIG scf7180000182931 3115 misassembled 5712924 5713673 19 768 CM091761.1 scf7180000182932 99.87 True CONTIG scf7180000182932 910 correct 2651822 2653271 1 1450 CM091767.1 scf7180000182933 99.93 True CONTIG scf7180000182933 1564 correct 8337299 8339113 1816 1 CM091763.1 scf7180000182934 99.78 True translocation 405557 406820 1817 3080 CM091765.1 scf7180000182934 99.84 True CONTIG scf7180000182934 3080 misassembled 3892241 3893790 1578 28 CM091751.1 scf7180000182935 99.29 True CONTIG scf7180000182935 1747 correct 7394913 7396231 1327 8 CM091758.1 scf7180000182936 99.4 True translocation 9373021 9374778 3074 1328 CM091753.1 scf7180000182936 98.81 True CONTIG scf7180000182936 3074 misassembled 960250 961883 1 1634 CM091759.1 scf7180000182937 99.51 True translocation 7991877 7993304 1636 3064 CM091758.1 scf7180000182937 99.44 True CONTIG scf7180000182937 3064 misassembled 7072953 7074539 1 1587 CM091765.1 scf7180000182938 99.94 True translocation 494144 495016 1588 2460 CM091753.1 scf7180000182938 100.0 True CONTIG scf7180000182938 2460 misassembled 6466738 6468003 1266 1 CM091756.1 scf7180000182939 99.61 True CONTIG scf7180000182939 1310 correct 404481 407531 3055 1 CM091765.1 scf7180000182940 99.77 True CONTIG scf7180000182940 3055 correct 8707809 8709066 1258 1 CM091763.1 scf7180000182941 99.76 True CONTIG scf7180000182941 1651 correct CONTIG scf7180000182942 438 unaligned 15988418 15989557 1 1141 CM091753.1 scf7180000182943 99.39 True translocation 5533006 5534296 1145 2436 CM091765.1 scf7180000182943 99.46 True CONTIG scf7180000182943 2436 misassembled 9722355 9727099 1 4746 CM091765.1 scf7180000182944 99.81 True CONTIG scf7180000182944 4746 correct 8981296 8982532 1 1237 CM091766.1 scf7180000182945 99.84 True CONTIG scf7180000182945 1689 correct 4975211 4976204 993 1 CM091765.1 scf7180000182946 99.9 True CONTIG scf7180000182946 1137 correct 4226212 4226839 342 969 CM091751.1 scf7180000182947 98.25 True CONTIG scf7180000182947 969 correct 8098039 8099374 1 1336 CM091753.1 scf7180000182948 99.4 True CONTIG scf7180000182948 1553 correct CONTIG scf7180000182949 551 unaligned 2589539 2590696 1 1158 CM091758.1 scf7180000182950 99.65 True CONTIG scf7180000182950 1158 correct 5483219 5484116 14 914 CM091751.1 scf7180000182951 99.67 True CONTIG scf7180000182951 1334 correct 677151 679100 1 1950 CM091761.1 scf7180000182952 100.0 True CONTIG scf7180000182952 1982 correct CONTIG scf7180000182953 358 unaligned 10377635 10379590 1956 1 CM091763.1 scf7180000182954 99.49 True CONTIG scf7180000182954 2009 correct CONTIG scf7180000182955 704 unaligned 4781831 4783740 1915 1 CM091765.1 scf7180000182956 99.53 True CONTIG scf7180000182956 2053 correct CONTIG scf7180000182957 511 unaligned CONTIG scf7180000182958 3686 unaligned 5227257 5228748 1492 2 CM091765.1 scf7180000182959 99.66 True translocation 3464163 3464695 1504 2039 CM091767.1 scf7180000182959 99.44 True CONTIG scf7180000182959 2039 misassembled 9547905 9548971 1066 1 CM091760.1 scf7180000182960 96.3 True CONTIG scf7180000182960 1066 correct 737284 740559 1 3125 CM091764.1 scf7180000182961 95.33 True CONTIG scf7180000182961 3125 correct CONTIG scf7180000182962 490 unaligned CONTIG scf7180000182963 682 unaligned CONTIG scf7180000182964 313 unaligned 2778941 2780282 1 1344 CM091767.1 scf7180000182965 99.26 True CONTIG scf7180000182965 1472 correct 177096 177859 883 120 CM091753.1 scf7180000182966 100.0 True CONTIG scf7180000182966 883 correct 9134461 9135100 640 1 CM091767.1 scf7180000182967 100.0 True CONTIG scf7180000182967 640 correct 2398177 2398790 614 1 CM091762.1 scf7180000182968 100.0 True CONTIG scf7180000182968 878 correct 9168605 9169491 859 1 CM091763.1 scf7180000182969 96.51 True CONTIG scf7180000182969 860 correct 5960884 5961667 1 784 CM091763.1 scf7180000182970 99.63 True translocation 9779120 9779956 785 1621 CM091760.1 scf7180000182970 100.0 True CONTIG scf7180000182970 1621 misassembled 7064440 7065380 1 942 CM091758.1 scf7180000182971 99.07 True translocation 737744 738848 2047 943 CM091752.1 scf7180000182971 99.64 True CONTIG scf7180000182971 2047 misassembled 12932938 12933776 1 852 CM091753.1 scf7180000182972 97.65 True CONTIG scf7180000182972 852 correct 839725 840926 1204 1 CM091767.1 scf7180000182973 99.76 True translocation 2579337 2581257 3125 1205 CM091764.1 scf7180000182973 100.0 True CONTIG scf7180000182973 3125 misassembled CONTIG scf7180000182974 314 unaligned 4020665 4021883 328 1546 CM091754.1 scf7180000182975 100.0 True CONTIG scf7180000182975 1546 correct 11346294 11347313 1020 1 CM091760.1 scf7180000182976 100.0 True CONTIG scf7180000182976 1158 correct 5312929 5314905 1978 1 CM091757.1 scf7180000182977 99.34 True translocation 16087603 16088715 3091 1979 CM091754.1 scf7180000182977 99.65 True CONTIG scf7180000182977 3091 misassembled CONTIG scf7180000182978 564 unaligned 12293322 12294662 1566 226 CM091757.1 scf7180000182979 99.78 True CONTIG scf7180000182979 1566 correct CONTIG scf7180000182980 343 unaligned 11177443 11179446 2005 1 CM091751.1 scf7180000182981 99.65 True CONTIG scf7180000182981 2030 correct 12728030 12729405 1383 1 CM091758.1 scf7180000182982 99.49 True CONTIG scf7180000182982 1451 correct 12032044 12033431 1 1388 CM091753.1 scf7180000182983 99.86 True translocation 632548 634300 1389 3142 CM091757.1 scf7180000182983 99.71 True CONTIG scf7180000182983 3142 misassembled 7104742 7106347 1 1605 CM091753.1 scf7180000182984 99.44 True translocation 9746243 9747314 2676 1606 CM091757.1 scf7180000182984 99.46 True CONTIG scf7180000182984 2676 misassembled CONTIG scf7180000182985 332 unaligned 2839516 2840293 1 777 CM091760.1 scf7180000182986 99.74 True CONTIG scf7180000182986 848 correct 265258 274594 9287 1 CM091765.1 scf7180000182987 99.25 True CONTIG scf7180000182987 9353 correct 9520390 9522273 1 1898 CM091759.1 scf7180000182988 98.58 True translocation 9677723 9678943 1899 3119 CM091766.1 scf7180000182988 99.84 True CONTIG scf7180000182988 3119 misassembled 4754340 4754861 522 1 CM091767.1 scf7180000182989 99.62 True indel: indel (<= 5bp) 4753654 4754339 1209 524 CM091767.1 scf7180000182989 100.0 True local misassembly 4752689 4753223 2017 1483 CM091767.1 scf7180000182989 100.0 True CONTIG scf7180000182989 2508 correct 4748169 4749134 968 1 CM091767.1 scf7180000182990 99.17 True CONTIG scf7180000182990 1121 correct 10848519 10850030 1514 1 CM091761.1 scf7180000182991 99.74 True CONTIG scf7180000182991 2006 correct 18466206 18466709 712 209 CM091753.1 scf7180000182992 100.0 True CONTIG scf7180000182992 712 correct 6054633 6056600 1 1967 CM091764.1 scf7180000182993 99.64 True CONTIG scf7180000182993 1967 correct 12615314 12615867 1 554 CM091759.1 scf7180000182994 98.38 True CONTIG scf7180000182994 636 correct 9364298 9366078 1781 1 CM091758.1 scf7180000182995 99.94 True CONTIG scf7180000182995 1863 correct 15721086 15721742 657 1 CM091758.1 scf7180000182996 100.0 True CONTIG scf7180000182996 781 correct 2312412 2314297 1 1883 CM091757.1 scf7180000182997 99.63 True CONTIG scf7180000182997 1883 correct 8786783 8787531 750 1 CM091757.1 scf7180000182998 99.74 True translocation 729974 731264 2047 751 CM091760.1 scf7180000182998 99.54 True CONTIG scf7180000182998 2047 misassembled CONTIG scf7180000182999 727 unaligned CONTIG scf7180000183000 379 unaligned 8416792 8418575 312 2097 CM091753.1 scf7180000183001 99.55 True CONTIG scf7180000183001 2097 correct 7738635 7740041 1634 227 CM091753.1 scf7180000183002 99.79 True CONTIG scf7180000183002 1634 correct 6900383 6902256 1874 1 CM091763.1 scf7180000183003 99.79 True translocation 18416845 18418087 1875 3123 CM091751.1 scf7180000183003 98.73 True CONTIG scf7180000183003 3127 misassembled 988608 989796 4 1191 CM091765.1 scf7180000183004 99.24 True CONTIG scf7180000183004 1377 correct 3718325 3721216 1 2884 CM091766.1 scf7180000183005 99.21 True CONTIG scf7180000183005 2884 correct 5335156 5336221 1 1071 CM091756.1 scf7180000183006 98.97 True CONTIG scf7180000183006 1147 correct 13671876 13673492 1 1617 CM091758.1 scf7180000183007 99.88 True translocation 16451521 16453041 1618 3138 CM091753.1 scf7180000183007 99.87 True CONTIG scf7180000183007 3138 misassembled 9491801 9492913 1 1112 CM091760.1 scf7180000183008 98.03 True translocation 14336008 14336944 2047 1113 CM091751.1 scf7180000183008 99.38 True CONTIG scf7180000183008 2047 misassembled CONTIG scf7180000183009 314 unaligned 12562171 12565289 3131 1 CM091760.1 scf7180000183010 99.27 True CONTIG scf7180000183010 3131 correct CONTIG scf7180000183011 504 unaligned 9998534 9999937 1 1403 CM091758.1 scf7180000183012 99.79 True translocation 3719968 3721191 2617 1404 CM091766.1 scf7180000183012 98.32 True CONTIG scf7180000183012 2617 misassembled 7824313 7824930 618 1 CM091757.1 scf7180000183013 100.0 True translocation 9770156 9770784 619 1247 CM091755.1 scf7180000183013 99.84 True CONTIG scf7180000183013 1247 misassembled 173429 174852 1424 1 CM091762.1 scf7180000183014 99.37 True CONTIG scf7180000183014 1449 correct 3634074 3635201 1128 1 CM091752.1 scf7180000183015 99.65 True translocation 6769705 6771274 2700 1134 CM091757.1 scf7180000183015 99.62 True CONTIG scf7180000183015 2700 misassembled 3086221 3086949 1 731 CM091755.1 scf7180000183016 99.73 True CONTIG scf7180000183016 817 correct CONTIG scf7180000183017 316 unaligned 6690080 6691320 492 1732 CM091763.1 scf7180000183018 99.76 True CONTIG scf7180000183018 1732 correct 4967293 4969192 1916 19 CM091764.1 scf7180000183019 99.68 True translocation 15943673 15944842 3087 1917 CM091755.1 scf7180000183019 99.75 True CONTIG scf7180000183019 3087 misassembled 7265385 7266137 5 757 CM091759.1 scf7180000183020 99.87 True translocation 6385900 6386940 758 1798 CM091757.1 scf7180000183020 99.9 True CONTIG scf7180000183020 1798 misassembled CONTIG scf7180000183021 719 unaligned 3449095 3450769 1675 1 CM091751.1 scf7180000183022 99.94 True CONTIG scf7180000183022 2169 correct 12719739 12720537 1 815 CM091754.1 scf7180000183023 96.33 True translocation 3364385 3365599 839 2047 CM091765.1 scf7180000183023 98.6 True CONTIG scf7180000183023 2047 misassembled 13473145 13474140 1 996 CM091753.1 scf7180000183024 100.0 True CONTIG scf7180000183024 1147 correct 12032988 12034211 20 1243 CM091755.1 scf7180000183025 99.84 True local misassembly 12034705 12035586 1244 2125 CM091755.1 scf7180000183025 99.66 True indel: indel (<= 5bp) 12035587 12036586 2127 3126 CM091755.1 scf7180000183025 100.0 True CONTIG scf7180000183025 3126 correct 15435594 15436196 1 603 CM091755.1 scf7180000183026 99.34 True CONTIG scf7180000183026 628 correct 7793725 7794777 1047 1 CM091751.1 scf7180000183027 99.15 True translocation 272798 273372 1622 1048 CM091755.1 scf7180000183027 100.0 True CONTIG scf7180000183027 1622 misassembled 7736459 7737133 1049 373 CM091758.1 scf7180000183028 98.52 True CONTIG scf7180000183028 1049 correct 212111 213315 1694 485 CM091754.1 scf7180000183029 99.34 True CONTIG scf7180000183029 1708 correct 7072909 7077592 1 4665 CM091765.1 scf7180000183030 99.4 True CONTIG scf7180000183030 4665 correct 2076883 2077764 1 882 CM091764.1 scf7180000183031 100.0 True CONTIG scf7180000183031 1095 correct 2027042 2028340 1 1300 CM091767.1 scf7180000183032 99.92 True CONTIG scf7180000183032 1463 correct 2796548 2797788 1241 1 CM091752.1 scf7180000183033 99.92 True translocation 11238302 11238861 1242 1801 CM091755.1 scf7180000183033 100.0 True CONTIG scf7180000183033 1801 misassembled 11862631 11863592 421 1382 CM091761.1 scf7180000183034 99.58 True CONTIG scf7180000183034 1382 correct 12534132 12534859 2 736 CM091754.1 scf7180000183035 98.54 True translocation 10452251 10453068 1554 737 CM091765.1 scf7180000183035 99.88 True CONTIG scf7180000183035 1554 misassembled 82898 83695 16 817 CM091754.1 scf7180000183036 99.39 True translocation 7169439 7170666 2047 818 CM091763.1 scf7180000183036 99.43 True CONTIG scf7180000183036 2047 misassembled 842711 843775 1064 1 CM091751.1 scf7180000183037 99.81 True translocation 7168536 7169104 2036 1468 CM091760.1 scf7180000183037 100.0 True CONTIG scf7180000183037 2036 misassembled 14215082 14215728 694 48 CM091755.1 scf7180000183038 99.38 True CONTIG scf7180000183038 694 correct CONTIG scf7180000183039 333 unaligned 11130259 11131449 1192 1 CM091763.1 scf7180000183040 99.5 True translocation 13723831 13725503 2865 1193 CM091758.1 scf7180000183040 100.0 True CONTIG scf7180000183040 2865 misassembled CONTIG scf7180000183041 422 unaligned 6660212 6661426 1 1215 CM091753.1 scf7180000183042 99.59 True translocation 5174956 5175579 1839 1216 CM091765.1 scf7180000183042 99.37 True CONTIG scf7180000183042 1854 misassembled 8064077 8064667 622 32 CM091757.1 scf7180000183043 99.51 True translocation 11995051 11996527 2098 623 CM091760.1 scf7180000183043 99.73 True CONTIG scf7180000183043 2098 misassembled 14219098 14219641 544 1 CM091757.1 scf7180000183044 100.0 True CONTIG scf7180000183044 898 correct 1729247 1730364 4 1123 CM091763.1 scf7180000183045 99.38 True CONTIG scf7180000183045 1487 correct 7279413 7280450 1 1039 CM091765.1 scf7180000183046 99.52 True translocation 5784423 5785422 2048 1048 CM091759.1 scf7180000183046 99.6 True CONTIG scf7180000183046 2048 misassembled 9339190 9340224 1 1036 CM091759.1 scf7180000183047 99.71 True CONTIG scf7180000183047 1120 correct 8218825 8220783 1 1939 CM091758.1 scf7180000183048 98.57 True translocation 233071 234221 1940 3092 CM091762.1 scf7180000183048 99.66 True CONTIG scf7180000183048 3092 misassembled 1187253 1188078 1 826 CM091752.1 scf7180000183049 99.15 True CONTIG scf7180000183049 826 correct 4883307 4884490 42 1226 CM091751.1 scf7180000183050 99.49 True CONTIG scf7180000183050 1241 correct 7041376 7042980 1 1576 CM091759.1 scf7180000183051 97.38 True translocation 10055538 10056209 2248 1577 CM091753.1 scf7180000183051 99.43 True CONTIG scf7180000183051 2248 misassembled 1967582 1968786 1 1202 CM091758.1 scf7180000183052 99.67 True CONTIG scf7180000183052 1666 correct 5943575 5944519 946 1 CM091754.1 scf7180000183053 99.79 True relocation, inconsistency = 4040600 1901875 1902974 2047 947 CM091754.1 scf7180000183053 99.55 True CONTIG scf7180000183053 2047 misassembled 12756476 12757069 19 612 CM091753.1 scf7180000183054 100.0 True translocation 8379705 8381130 623 2047 CM091760.1 scf7180000183054 99.51 True CONTIG scf7180000183054 2047 misassembled CONTIG scf7180000183055 392 unaligned CONTIG scf7180000183056 323 unaligned 279461 280661 1385 185 CM091754.1 scf7180000183057 99.58 True local misassembly 278331 279278 2379 1432 CM091754.1 scf7180000183057 99.68 True indel: indel (> 5bp) 277668 278310 3052 2410 CM091754.1 scf7180000183057 99.53 True CONTIG scf7180000183057 3052 correct 1134329 1135769 108 1548 CM091759.1 scf7180000183058 100.0 True CONTIG scf7180000183058 1548 correct CONTIG scf7180000183059 387 unaligned 4210163 4211500 274 1611 CM091758.1 scf7180000183060 99.7 True CONTIG scf7180000183060 1611 correct 6330383 6331466 1170 86 CM091766.1 scf7180000183061 99.08 True CONTIG scf7180000183061 1170 correct 17640082 17641854 1773 1 CM091753.1 scf7180000183062 99.77 True translocation 1230958 1231931 1774 2747 CM091764.1 scf7180000183062 99.8 True CONTIG scf7180000183062 2747 misassembled 15131621 15132904 1295 11 CM091755.1 scf7180000183063 99.61 True CONTIG scf7180000183063 1295 correct 15131471 15132912 1443 1 CM091755.1 scf7180000183064 99.65 True CONTIG scf7180000183064 1443 correct 5129829 5130708 1 880 CM091756.1 scf7180000183065 100.0 True relocation, inconsistency = 3940874 9071583 9072098 881 1396 CM091756.1 scf7180000183065 99.44 True CONTIG scf7180000183065 1396 misassembled 290093 291538 1 1446 CM091753.1 scf7180000183066 100.0 True translocation 14414390 14416051 3108 1447 CM091755.1 scf7180000183066 100.0 True CONTIG scf7180000183066 3108 misassembled 4553591 4554626 1045 9 CM091760.1 scf7180000183067 99.42 True translocation 5221550 5222365 1046 1861 CM091753.1 scf7180000183067 99.64 True CONTIG scf7180000183067 1861 misassembled 10542296 10543572 1 1277 CM091754.1 scf7180000183068 99.92 True CONTIG scf7180000183068 1520 correct 2501313 2502884 1571 1 CM091765.1 scf7180000183069 99.87 True translocation 12061358 12062898 3112 1572 CM091754.1 scf7180000183069 99.04 True CONTIG scf7180000183069 3112 misassembled 11050759 11051400 1 642 CM091759.1 scf7180000183070 100.0 True CONTIG scf7180000183070 981 correct 12663785 12664617 1 833 CM091753.1 scf7180000183071 99.88 True translocation 4271710 4272923 2047 834 CM091760.1 scf7180000183071 99.26 True CONTIG scf7180000183071 2047 misassembled 4681641 4682730 1090 1 CM091758.1 scf7180000183072 99.82 True translocation 8194988 8195715 1818 1091 CM091759.1 scf7180000183072 99.87 True CONTIG scf7180000183072 1825 misassembled 11847039 11847960 4 925 CM091756.1 scf7180000183073 99.78 True translocation 3498410 3499147 1663 926 CM091753.1 scf7180000183073 100.0 True CONTIG scf7180000183073 1663 misassembled 10847437 10847979 1 543 CM091757.1 scf7180000183074 100.0 True CONTIG scf7180000183074 691 correct 7932725 7934055 1345 2 CM091758.1 scf7180000183075 98.51 True CONTIG scf7180000183075 1345 correct 7932720 7933878 1180 21 CM091758.1 scf7180000183076 99.31 True translocation 6785458 6787373 3112 1197 CM091763.1 scf7180000183076 99.69 True CONTIG scf7180000183076 3112 misassembled 13847285 13848449 1 1162 CM091755.1 scf7180000183077 99.66 True translocation 2513836 2514373 1700 1163 CM091762.1 scf7180000183077 100.0 True CONTIG scf7180000183077 1700 misassembled 15142956 15143638 1051 369 CM091756.1 scf7180000183078 100.0 True CONTIG scf7180000183078 1057 correct CONTIG scf7180000183079 478 unaligned 8995855 8997354 1 1504 CM091758.1 scf7180000183080 99.27 True translocation 9643648 9644281 1505 2138 CM091757.1 scf7180000183080 99.69 True CONTIG scf7180000183080 2138 misassembled 501815 503679 1864 10 CM091760.1 scf7180000183081 99.41 True CONTIG scf7180000183081 1864 correct 2263662 2264910 1356 108 CM091764.1 scf7180000183082 100.0 True CONTIG scf7180000183082 1356 correct 2115145 2116651 1 1506 CM091757.1 scf7180000183083 99.47 True CONTIG scf7180000183083 1650 correct 677295 679092 1 1798 CM091761.1 scf7180000183084 100.0 True translocation 960172 960837 1799 2464 CM091753.1 scf7180000183084 99.86 True CONTIG scf7180000183084 2464 misassembled 10760915 10762500 1586 1 CM091766.1 scf7180000183085 100.0 True translocation 7344915 7346416 3091 1590 CM091758.1 scf7180000183085 99.6 True CONTIG scf7180000183085 3091 misassembled 8118471 8119718 1 1248 CM091755.1 scf7180000183086 99.92 True translocation 5514852 5515484 1881 1249 CM091760.1 scf7180000183086 99.69 True CONTIG scf7180000183086 1881 misassembled 12201597 12202130 535 1 CM091759.1 scf7180000183087 99.81 True CONTIG scf7180000183087 691 correct 10120109 10121503 1394 1 CM091755.1 scf7180000183088 99.78 True translocation 3881440 3882807 1395 2762 CM091753.1 scf7180000183088 99.93 True CONTIG scf7180000183088 2762 misassembled 14141908 14143142 1 1236 CM091751.1 scf7180000183089 99.76 True CONTIG scf7180000183089 1272 correct 2943995 2945452 1 1458 CM091759.1 scf7180000183090 100.0 True CONTIG scf7180000183090 1589 correct 6068097 6068961 865 1 CM091768.1 scf7180000183091 100.0 True CONTIG scf7180000183091 988 correct 1435543 1436988 1 1446 CM091759.1 scf7180000183092 100.0 True CONTIG scf7180000183092 1552 correct 6925675 6926234 1 560 CM091760.1 scf7180000183093 100.0 True CONTIG scf7180000183093 719 correct 10445739 10447745 2009 1 CM091762.1 scf7180000183094 99.55 True CONTIG scf7180000183094 2101 correct 6417713 6418223 512 1 CM091768.1 scf7180000183095 99.8 True CONTIG scf7180000183095 512 correct 10863789 10864525 737 1 CM091760.1 scf7180000183096 99.73 True translocation 10415090 10415951 1599 738 CM091751.1 scf7180000183096 100.0 True CONTIG scf7180000183096 1599 misassembled 5412874 5413678 1 805 CM091754.1 scf7180000183097 100.0 True translocation 5182508 5183156 806 1454 CM091767.1 scf7180000183097 99.25 True CONTIG scf7180000183097 1459 misassembled CONTIG scf7180000183098 538 unaligned 15457966 15459292 1503 176 CM091751.1 scf7180000183099 99.92 True CONTIG scf7180000183099 1503 correct 3569310 3571262 1955 1 CM091767.1 scf7180000183100 99.54 True CONTIG scf7180000183100 2378 correct 5970092 5971239 1148 1 CM091761.1 scf7180000183101 99.65 True CONTIG scf7180000183101 1176 correct CONTIG scf7180000183102 406 unaligned 5252417 5252992 595 20 CM091751.1 scf7180000183103 99.65 True CONTIG scf7180000183103 595 correct CONTIG scf7180000183104 671 unaligned 6572449 6573624 1177 1 CM091760.1 scf7180000183105 99.24 True CONTIG scf7180000183105 1451 correct CONTIG scf7180000183106 704 unaligned 13741447 13743051 1 1605 CM091751.1 scf7180000183107 99.94 True CONTIG scf7180000183107 2026 correct 5229855 5231056 1195 1 CM091760.1 scf7180000183108 98.59 True relocation, inconsistency = -23669 5252574 5253523 2145 1196 CM091760.1 scf7180000183108 98.13 True CONTIG scf7180000183108 2145 misassembled 2156394 2157221 1 828 CM091764.1 scf7180000183109 100.0 True CONTIG scf7180000183109 961 correct 10269350 10270426 1 1077 CM091766.1 scf7180000183110 99.91 True translocation 13083312 13083839 1606 1078 CM091760.1 scf7180000183110 98.91 True CONTIG scf7180000183110 1606 misassembled 13690818 13692626 1 1809 CM091759.1 scf7180000183111 99.89 True CONTIG scf7180000183111 1941 correct 1534371 1535548 1 1176 CM091757.1 scf7180000183112 99.75 True CONTIG scf7180000183112 1335 correct CONTIG scf7180000183113 388 unaligned 7435920 7436873 1 948 CM091764.1 scf7180000183114 98.74 True CONTIG scf7180000183114 948 correct 2243149 2244551 91 1497 CM091751.1 scf7180000183115 99.08 True CONTIG scf7180000183115 1497 correct 8667342 8669348 2005 1 CM091765.1 scf7180000183116 99.3 True translocation 2109921 2110989 3074 2006 CM091755.1 scf7180000183116 99.82 True CONTIG scf7180000183116 3074 misassembled 12126550 12127308 1 759 CM091760.1 scf7180000183117 99.75 True translocation 4975641 4976926 2047 760 CM091753.1 scf7180000183117 99.3 True CONTIG scf7180000183117 2047 misassembled CONTIG scf7180000183118 305 unaligned 492577 493529 1287 335 CM091758.1 scf7180000183119 100.0 True CONTIG scf7180000183119 1287 correct CONTIG scf7180000183120 352 unaligned 6873559 6875002 1 1439 CM091758.1 scf7180000183121 99.1 True CONTIG scf7180000183121 1566 correct CONTIG scf7180000183122 519 unaligned CONTIG scf7180000183123 304 unaligned 4960999 4962046 1 1048 CM091755.1 scf7180000183125 99.43 True CONTIG scf7180000183125 1107 correct 15676906 15677446 681 141 CM091757.1 scf7180000183126 100.0 True CONTIG scf7180000183126 681 correct 920650 922033 1410 25 CM091765.1 scf7180000183127 99.49 True CONTIG scf7180000183127 1534 correct 5146612 5148248 1 1601 CM091751.1 scf7180000183128 96.77 True CONTIG scf7180000183128 1827 correct 2662374 2664345 1 1973 CM091756.1 scf7180000183130 99.14 True CONTIG scf7180000183130 2054 correct 872400 874100 14 1726 CM091768.1 scf7180000183131 98.42 True CONTIG scf7180000183131 1812 correct 1466909 1467970 1 1062 CM091759.1 scf7180000183132 100.0 True CONTIG scf7180000183132 1508 correct CONTIG scf7180000183133 653 unaligned 360668 362093 1427 1 CM091753.1 scf7180000183134 99.93 True translocation 10338548 10339054 1428 1934 CM091763.1 scf7180000183134 99.81 True CONTIG scf7180000183134 1934 misassembled 3474338 3475778 1 1441 CM091766.1 scf7180000183135 99.93 True translocation 4637508 4639152 1442 3086 CM091763.1 scf7180000183135 99.57 True CONTIG scf7180000183135 3086 misassembled 10296318 10298295 1 1982 CM091764.1 scf7180000183136 99.34 True CONTIG scf7180000183136 2173 correct 3346326 3347918 1 1579 CM091766.1 scf7180000183137 98.93 True translocation 66373 66890 2110 1593 CM091761.1 scf7180000183137 100.0 True CONTIG scf7180000183137 2110 misassembled 5674560 5675639 1080 1 CM091768.1 scf7180000183138 100.0 True CONTIG scf7180000183138 1299 correct 3106493 3107539 145 1191 CM091755.1 scf7180000183139 99.62 True CONTIG scf7180000183139 1216 correct 3299099 3299631 162 693 CM091757.1 scf7180000183140 98.87 True CONTIG scf7180000183140 693 correct CONTIG scf7180000183141 306 unaligned 14971082 14972168 1 1087 CM091760.1 scf7180000183142 99.82 True translocation 1497647 1498528 2007 1126 CM091752.1 scf7180000183142 99.43 True CONTIG scf7180000183142 2007 misassembled 11843495 11845398 1 1904 CM091751.1 scf7180000183143 99.74 True CONTIG scf7180000183143 2346 correct 173433 174496 1064 1 CM091762.1 scf7180000183144 99.44 True CONTIG scf7180000183144 1110 correct 1332010 1332785 1 776 CM091755.1 scf7180000183145 100.0 True translocation 10258202 10259472 2047 777 CM091758.1 scf7180000183145 99.76 True CONTIG scf7180000183145 2047 misassembled 5048133 5048691 557 1 CM091767.1 scf7180000183146 98.93 True translocation 9491520 9493007 2047 558 CM091760.1 scf7180000183146 98.13 True CONTIG scf7180000183146 2047 misassembled CONTIG scf7180000183147 778 unaligned 1502347 1503323 978 1 CM091768.1 scf7180000183148 99.49 True CONTIG scf7180000183148 1460 correct CONTIG scf7180000183149 305 unaligned 4158049 4158999 948 1 CM091762.1 scf7180000183150 99.47 True CONTIG scf7180000183150 1092 correct 5929465 5931325 1861 1 CM091763.1 scf7180000183151 99.84 True translocation 9822875 9823443 1862 2430 CM091759.1 scf7180000183151 99.83 True CONTIG scf7180000183151 2430 misassembled 9030902 9032419 1519 1 CM091756.1 scf7180000183152 99.61 True CONTIG scf7180000183152 1577 correct 17107341 17108584 1244 1 CM091751.1 scf7180000183153 100.0 True translocation 9823661 9824197 1245 1781 CM091766.1 scf7180000183153 100.0 True CONTIG scf7180000183153 1781 misassembled 220420 221408 989 1 CM091763.1 scf7180000183154 100.0 True CONTIG scf7180000183154 1249 correct CONTIG scf7180000183155 382 unaligned 6833480 6835276 1 1798 CM091764.1 scf7180000183156 99.78 True translocation 3216810 3218088 3078 1799 CM091758.1 scf7180000183156 99.77 True CONTIG scf7180000183156 3078 misassembled CONTIG scf7180000183157 361 unaligned 10303859 10305041 1 1183 CM091756.1 scf7180000183158 99.07 True translocation 8666478 8667297 1184 2005 CM091765.1 scf7180000183158 99.64 True CONTIG scf7180000183158 2005 misassembled 6688376 6689818 1 1442 CM091764.1 scf7180000183159 99.58 True translocation 5605018 5605535 1961 1443 CM091758.1 scf7180000183159 99.1 True CONTIG scf7180000183159 1961 misassembled 1449428 1450671 1 1244 CM091756.1 scf7180000183160 99.92 True CONTIG scf7180000183160 1396 correct 1929098 1929621 4 527 CM091752.1 scf7180000183161 98.47 True CONTIG scf7180000183161 527 correct 2324643 2325676 1036 1 CM091766.1 scf7180000183162 99.13 True CONTIG scf7180000183162 1142 correct 1449422 1450671 1250 1 CM091756.1 scf7180000183163 99.92 True CONTIG scf7180000183163 1363 correct 6753047 6754315 1290 18 CM091765.1 scf7180000183164 99.61 True CONTIG scf7180000183164 1546 correct 8384533 8385061 529 1 CM091758.1 scf7180000183165 100.0 True CONTIG scf7180000183165 928 correct 12770253 12772084 1834 1 CM091758.1 scf7180000183166 99.89 True CONTIG scf7180000183166 1900 correct 1378069 1378707 8 647 CM091768.1 scf7180000183167 98.12 True CONTIG scf7180000183167 647 correct CONTIG scf7180000183168 456 unaligned 11881354 11882512 1182 24 CM091756.1 scf7180000183169 99.22 True CONTIG scf7180000183169 1404 correct 18694511 18695082 752 181 CM091751.1 scf7180000183170 99.83 True CONTIG scf7180000183170 856 correct 4043730 4044383 1 654 CM091757.1 scf7180000183171 99.54 True CONTIG scf7180000183171 713 correct 9914448 9915572 1128 1 CM091760.1 scf7180000183172 99.2 True CONTIG scf7180000183172 1234 correct CONTIG scf7180000183173 354 unaligned CONTIG scf7180000183174 389 unaligned 10796236 10796997 1058 321 CM091760.1 scf7180000183175 96.59 True CONTIG scf7180000183175 1058 correct 10267079 10268256 1550 376 CM091763.1 scf7180000183176 99.66 True CONTIG scf7180000183176 1550 correct CONTIG scf7180000183177 379 unaligned 8886330 8887442 1113 1 CM091753.1 scf7180000183178 99.73 True CONTIG scf7180000183178 1390 correct 837011 838012 1 1002 CM091763.1 scf7180000183179 99.9 True translocation 12002813 12003857 1003 2047 CM091762.1 scf7180000183179 99.9 True CONTIG scf7180000183179 2047 misassembled 7601753 7602624 872 1 CM091751.1 scf7180000183180 99.77 True CONTIG scf7180000183180 872 correct 6709528 6710931 1 1404 CM091763.1 scf7180000183181 99.37 True translocation 10513738 10515397 3079 1405 CM091762.1 scf7180000183181 98.45 True CONTIG scf7180000183181 3079 misassembled 7277141 7280096 1 2960 CM091754.1 scf7180000183182 99.33 True CONTIG scf7180000183182 2960 correct CONTIG scf7180000183183 403 unaligned 6896041 6897053 1010 1 CM091755.1 scf7180000183184 99.31 True CONTIG scf7180000183184 1271 correct 14560179 14562032 1 1854 CM091754.1 scf7180000183185 100.0 True translocation 1932253 1933499 1855 3100 CM091753.1 scf7180000183185 99.29 True CONTIG scf7180000183185 3100 misassembled 1996416 1997051 466 1100 CM091757.1 scf7180000183186 99.53 True CONTIG scf7180000183186 1100 correct 8122858 8124643 1 1783 CM091766.1 scf7180000183187 99.72 True CONTIG scf7180000183187 1837 correct 7254568 7255505 1 939 CM091754.1 scf7180000183188 99.47 True CONTIG scf7180000183188 1110 correct 2759499 2760972 1 1475 CM091759.1 scf7180000183189 99.93 True CONTIG scf7180000183189 1691 correct 12687594 12689336 1 1744 CM091759.1 scf7180000183190 99.54 True CONTIG scf7180000183190 1856 correct 4262534 4263062 530 1 CM091760.1 scf7180000183191 99.09 True translocation 4516025 4517541 2047 531 CM091751.1 scf7180000183191 99.41 True CONTIG scf7180000183191 2047 misassembled 15324050 15325202 75 1226 CM091753.1 scf7180000183192 98.96 True CONTIG scf7180000183192 1240 correct 2499642 2500724 1 1083 CM091755.1 scf7180000183193 99.82 True CONTIG scf7180000183193 1083 correct 13277895 13280324 1 2435 CM091759.1 scf7180000183194 99.18 True CONTIG scf7180000183194 2435 correct 8064046 8065173 1 1128 CM091754.1 scf7180000183195 99.82 True translocation 14037085 14037747 1129 1792 CM091756.1 scf7180000183195 99.42 True CONTIG scf7180000183195 1792 misassembled 5065295 5066040 744 1 CM091760.1 scf7180000183196 99.6 True CONTIG scf7180000183196 831 correct 3970468 3971144 677 1 CM091764.1 scf7180000183197 100.0 True CONTIG scf7180000183197 803 correct CONTIG scf7180000183198 372 unaligned 5691773 5692402 762 133 CM091756.1 scf7180000183199 99.84 True CONTIG scf7180000183199 762 correct 4759516 4760558 1045 1 CM091757.1 scf7180000183200 99.23 True CONTIG scf7180000183200 1258 correct 443160 443746 174 760 CM091764.1 scf7180000183201 100.0 True CONTIG scf7180000183201 760 correct 3625632 3627019 395 1789 CM091765.1 scf7180000183202 99.07 True CONTIG scf7180000183202 1789 correct 10906763 10907800 1039 1 CM091755.1 scf7180000183203 99.71 True CONTIG scf7180000183203 1185 correct 5274681 5276608 6 1939 CM091759.1 scf7180000183204 98.71 True CONTIG scf7180000183204 2436 correct 9773464 9775099 1635 1 CM091758.1 scf7180000183205 99.51 True translocation 10162348 10163079 2367 1636 CM091765.1 scf7180000183205 100.0 True CONTIG scf7180000183205 2367 misassembled 7464414 7465836 1 1423 CM091753.1 scf7180000183206 99.51 True translocation 6276189 6276811 2047 1424 CM091763.1 scf7180000183206 99.07 True CONTIG scf7180000183206 2047 misassembled 4359801 4361701 2047 149 CM091753.1 scf7180000183207 99.63 True CONTIG scf7180000183207 2047 correct CONTIG scf7180000183208 463 unaligned 10463322 10464726 1 1398 CM091763.1 scf7180000183209 99.29 True CONTIG scf7180000183209 1553 correct 4517876 4518690 1 815 CM091765.1 scf7180000183210 99.39 True CONTIG scf7180000183210 873 correct 6208807 6210727 1 1899 CM091766.1 scf7180000183211 98.28 True CONTIG scf7180000183211 2292 correct 2575040 2576362 1 1324 CM091762.1 scf7180000183212 99.92 True CONTIG scf7180000183212 1413 correct CONTIG scf7180000183213 401 unaligned 7162017 7163767 1 1735 CM091754.1 scf7180000183214 97.5 True CONTIG scf7180000183214 1890 correct 11134720 11136562 1844 1 CM091760.1 scf7180000183215 99.4 True CONTIG scf7180000183215 2294 correct 6485601 6486302 702 1 CM091760.1 scf7180000183216 99.57 True relocation, inconsistency = 3435764 9922067 9922658 703 1294 CM091760.1 scf7180000183216 99.83 True CONTIG scf7180000183216 1294 misassembled 11910035 11911143 1122 15 CM091762.1 scf7180000183217 99.21 True translocation 9363204 9364771 2687 1123 CM091766.1 scf7180000183217 99.3 True CONTIG scf7180000183217 2687 misassembled 2224973 2225886 1 907 CM091768.1 scf7180000183218 98.47 True CONTIG scf7180000183218 1214 correct 583216 584857 1642 1 CM091753.1 scf7180000183219 99.76 True CONTIG scf7180000183219 1689 correct 12619094 12619887 1 793 CM091759.1 scf7180000183220 98.49 True CONTIG scf7180000183220 793 correct 1774711 1776414 1704 1 CM091751.1 scf7180000183221 99.36 True CONTIG scf7180000183221 1824 correct 16532452 16533967 1515 1 CM091754.1 scf7180000183222 99.8 True CONTIG scf7180000183222 1727 correct 14314566 14316089 1 1524 CM091756.1 scf7180000183223 99.54 True CONTIG scf7180000183223 1538 correct CONTIG scf7180000183224 483 unaligned CONTIG scf7180000183225 555 unaligned 12664634 12665333 695 1 CM091753.1 scf7180000183226 98.71 True CONTIG scf7180000183226 905 correct 12556595 12557149 1 555 CM091758.1 scf7180000183227 99.48 True translocation 1570501 1571992 556 2047 CM091763.1 scf7180000183227 99.87 True CONTIG scf7180000183227 2047 misassembled 4461621 4462596 1482 507 CM091763.1 scf7180000183228 99.59 True CONTIG scf7180000183228 1482 correct CONTIG scf7180000183229 397 unaligned 17440820 17442209 1 1389 CM091753.1 scf7180000183230 99.64 True CONTIG scf7180000183230 1596 correct CONTIG scf7180000183231 375 unaligned 12176649 12177611 1 963 CM091754.1 scf7180000183232 99.7 True translocation 8440555 8441638 964 2047 CM091766.1 scf7180000183232 100.0 True CONTIG scf7180000183232 2047 misassembled 16040478 16041506 1 1029 CM091756.1 scf7180000183233 99.9 True CONTIG scf7180000183233 1162 correct 17015700 17017605 2047 141 CM091751.1 scf7180000183234 99.95 True CONTIG scf7180000183234 2047 correct 2014853 2016077 18 1242 CM091768.1 scf7180000183235 99.84 True CONTIG scf7180000183235 1286 correct 12073445 12074516 1072 1 CM091762.1 scf7180000183236 99.91 True translocation 4344526 4345498 2047 1073 CM091759.1 scf7180000183236 99.4 True CONTIG scf7180000183236 2047 misassembled 6694286 6695070 785 1 CM091756.1 scf7180000183237 99.14 True translocation 12268100 12269360 786 2047 CM091754.1 scf7180000183237 99.6 True CONTIG scf7180000183237 2047 misassembled 2174959 2175537 1 560 CM091756.1 scf7180000183238 96.37 True CONTIG scf7180000183238 721 correct 2136559 2137432 10 881 CM091768.1 scf7180000183239 99.2 True CONTIG scf7180000183239 950 correct 1521491 1522456 965 1 CM091767.1 scf7180000183240 99.38 True CONTIG scf7180000183240 1082 correct 2429449 2431301 1850 1 CM091756.1 scf7180000183241 98.11 True CONTIG scf7180000183241 2004 correct 1301637 1302363 2 728 CM091767.1 scf7180000183242 99.86 True CONTIG scf7180000183242 945 correct 1109720 1111107 1 1390 CM091764.1 scf7180000183243 99.71 True CONTIG scf7180000183243 1714 correct 12951391 12952734 1363 22 CM091760.1 scf7180000183244 98.74 True CONTIG scf7180000183244 1832 correct 13005406 13007055 1652 1 CM091751.1 scf7180000183245 99.33 True translocation 4516412 4517864 3106 1653 CM091765.1 scf7180000183245 99.66 True CONTIG scf7180000183245 3106 misassembled 2497423 2498552 1 1131 CM091757.1 scf7180000183246 99.73 True CONTIG scf7180000183246 1180 correct 15117338 15117862 1006 482 CM091760.1 scf7180000183247 100.0 True CONTIG scf7180000183247 1006 correct 14324658 14325487 830 1 CM091751.1 scf7180000183248 99.76 True CONTIG scf7180000183248 999 correct 1137870 1139597 1 1731 CM091765.1 scf7180000183249 99.48 True translocation 6126050 6126931 1732 2612 CM091763.1 scf7180000183249 99.56 True CONTIG scf7180000183249 2612 misassembled 20389040 20389974 1 934 CM091751.1 scf7180000183250 99.25 True CONTIG scf7180000183250 1000 correct 2809113 2810179 1083 18 CM091768.1 scf7180000183251 99.63 True CONTIG scf7180000183251 1201 correct 18333289 18334676 1 1388 CM091751.1 scf7180000183252 99.29 True translocation 10005722 10007461 1389 3128 CM091765.1 scf7180000183252 100.0 True CONTIG scf7180000183252 3128 misassembled CONTIG scf7180000183253 328 unaligned 4381780 4382966 1182 1 CM091767.1 scf7180000183254 98.76 True translocation 11447037 11448506 2653 1183 CM091757.1 scf7180000183254 99.18 True CONTIG scf7180000183254 2653 misassembled CONTIG scf7180000183255 512 unaligned 11656366 11657853 1 1489 CM091753.1 scf7180000183256 99.73 True translocation 12561677 12563278 3099 1490 CM091760.1 scf7180000183256 99.38 True CONTIG scf7180000183256 3099 misassembled 5773009 5774690 35 1716 CM091766.1 scf7180000183257 99.52 True CONTIG scf7180000183257 1939 correct 11937960 11939517 1 1568 CM091753.1 scf7180000183258 99.17 True CONTIG scf7180000183258 1657 correct CONTIG scf7180000183259 360 unaligned 17693740 17695468 1729 1 CM091751.1 scf7180000183260 100.0 True CONTIG scf7180000183260 1833 correct 3544435 3545925 1505 1 CM091751.1 scf7180000183261 98.74 True CONTIG scf7180000183261 1571 correct 1265153 1267058 1904 1 CM091759.1 scf7180000183262 99.58 True translocation 3542407 3542924 1905 2422 CM091751.1 scf7180000183262 99.82 True CONTIG scf7180000183262 2422 misassembled CONTIG scf7180000183263 327 unaligned 1035133 1037455 1 2325 CM091753.1 scf7180000183264 99.61 True CONTIG scf7180000183264 2325 correct 9116356 9117955 1 1600 CM091763.1 scf7180000183265 99.5 True CONTIG scf7180000183265 1600 correct 5359098 5360473 1382 1 CM091756.1 scf7180000183266 98.77 True CONTIG scf7180000183266 1568 correct 6274347 6275837 1 1490 CM091765.1 scf7180000183267 99.73 True CONTIG scf7180000183267 1566 correct 14617869 14618587 304 1021 CM091756.1 scf7180000183268 99.86 True CONTIG scf7180000183268 1021 correct CONTIG scf7180000183269 461 unaligned CONTIG scf7180000183270 400 unaligned CONTIG scf7180000183271 528 unaligned CONTIG scf7180000183272 444 unaligned 13243026 13247505 1 4475 CM091759.1 scf7180000183273 99.02 True CONTIG scf7180000183273 4475 correct 12356210 12358200 2384 394 CM091756.1 scf7180000183274 99.65 True CONTIG scf7180000183274 2384 correct 1822871 1823383 1 510 CM091768.1 scf7180000183275 97.67 True CONTIG scf7180000183275 510 correct 10168886 10170125 1240 1 CM091759.1 scf7180000183276 99.68 True CONTIG scf7180000183276 1301 correct CONTIG scf7180000183277 515 unaligned CONTIG scf7180000183278 312 unaligned 15340563 15341431 1 869 CM091757.1 scf7180000183279 100.0 True CONTIG scf7180000183279 1218 correct 10648105 10648636 532 1 CM091765.1 scf7180000183280 100.0 True CONTIG scf7180000183280 708 correct 7810649 7812030 30 1408 CM091756.1 scf7180000183281 99.49 True CONTIG scf7180000183281 1577 correct 4755030 4756077 1048 1 CM091759.1 scf7180000183282 99.71 True CONTIG scf7180000183282 1152 correct 15046165 15047446 1282 1 CM091757.1 scf7180000183283 99.92 True translocation 4089658 4091496 1283 3121 CM091758.1 scf7180000183283 99.95 True CONTIG scf7180000183283 3121 misassembled CONTIG scf7180000183284 404 unaligned 14125522 14126218 1 697 CM091754.1 scf7180000183285 99.57 True CONTIG scf7180000183285 955 correct 959553 960796 56 1309 CM091752.1 scf7180000183286 99.04 True CONTIG scf7180000183286 1311 correct CONTIG scf7180000183287 301 unaligned 5118048 5119246 1 1199 CM091761.1 scf7180000183288 99.83 True CONTIG scf7180000183288 1199 correct CONTIG scf7180000183289 628 unaligned 9998492 9999428 937 1 CM091765.1 scf7180000183290 100.0 True CONTIG scf7180000183290 1006 correct 10751517 10752806 1291 1 CM091755.1 scf7180000183291 99.54 True CONTIG scf7180000183291 1471 correct 1509991 1511323 1314 1 CM091757.1 scf7180000183292 97.09 True CONTIG scf7180000183292 1463 correct 7974792 7975849 30 1088 CM091756.1 scf7180000183293 99.24 True CONTIG scf7180000183293 1207 correct 5623114 5624168 1 1055 CM091758.1 scf7180000183294 99.72 True translocation 1721843 1722833 2047 1056 CM091767.1 scf7180000183294 99.61 True CONTIG scf7180000183294 2047 misassembled 317055 318680 1634 1 CM091754.1 scf7180000183295 98.59 True translocation 5492956 5494381 3081 1656 CM091761.1 scf7180000183295 99.93 True CONTIG scf7180000183295 3081 misassembled 16258898 16260542 1 1645 CM091751.1 scf7180000183296 100.0 True CONTIG scf7180000183296 1774 correct 2085730 2086312 587 4 CM091762.1 scf7180000183297 99.83 True CONTIG scf7180000183297 831 correct 4792687 4793380 1 694 CM091768.1 scf7180000183298 100.0 True CONTIG scf7180000183298 838 correct 15019367 15019899 1 533 CM091758.1 scf7180000183299 99.62 True CONTIG scf7180000183299 707 correct CONTIG scf7180000183300 405 unaligned 8620235 8621962 2030 293 CM091765.1 scf7180000183301 98.91 True CONTIG scf7180000183301 2034 correct 5183342 5183857 516 1 CM091766.1 scf7180000183302 99.26 True relocation, inconsistency = -4215530 9397105 9398871 2284 517 CM091766.1 scf7180000183302 99.83 True CONTIG scf7180000183302 2284 misassembled 211582 212091 1 510 CM091753.1 scf7180000183303 97.25 True CONTIG scf7180000183303 531 correct 12396584 12397101 801 284 CM091754.1 scf7180000183304 100.0 True CONTIG scf7180000183304 803 correct 7182515 7183735 1221 1 CM091762.1 scf7180000183305 99.35 True CONTIG scf7180000183305 1260 correct 3632175 3633214 1 1040 CM091767.1 scf7180000183306 99.9 True translocation 3913486 3914491 2047 1041 CM091755.1 scf7180000183306 99.9 True CONTIG scf7180000183306 2047 misassembled CONTIG scf7180000183307 351 unaligned 4945710 4947702 1 1994 CM091767.1 scf7180000183308 99.85 True CONTIG scf7180000183308 2317 correct 16722330 16723682 1355 1 CM091753.1 scf7180000183309 99.78 True CONTIG scf7180000183309 1430 correct CONTIG scf7180000183310 532 unaligned CONTIG scf7180000183311 316 unaligned 11784229 11784849 621 1 CM091757.1 scf7180000183312 99.36 True translocation 7082536 7083958 2047 623 CM091758.1 scf7180000183312 99.86 True CONTIG scf7180000183312 2047 misassembled 3042918 3044231 1 1314 CM091768.1 scf7180000183313 99.24 True CONTIG scf7180000183313 1646 correct 12566690 12568596 2047 140 CM091758.1 scf7180000183314 99.9 True CONTIG scf7180000183314 2047 correct CONTIG scf7180000183315 421 unaligned 7861288 7862710 1422 1 CM091756.1 scf7180000183316 99.02 True CONTIG scf7180000183316 1512 correct CONTIG scf7180000183317 332 unaligned CONTIG scf7180000183318 49336 unaligned 622883 624128 1246 1 CM091752.1 scf7180000183319 99.12 True CONTIG scf7180000183319 1246 correct 16368861 16370174 1315 1 CM091753.1 scf7180000183320 99.54 True CONTIG scf7180000183320 1566 correct 15125153 15126115 69 1030 CM091758.1 scf7180000183321 99.38 True CONTIG scf7180000183321 1030 correct 2116966 2117785 1 820 CM091754.1 scf7180000183322 99.88 True CONTIG scf7180000183322 963 correct 977769 979100 81 1407 CM091761.1 scf7180000183323 98.88 True CONTIG scf7180000183323 1407 correct 985798 987648 1 1851 CM091761.1 scf7180000183324 99.89 True CONTIG scf7180000183324 2039 correct 5391372 5392673 1 1302 CM091762.1 scf7180000183325 99.46 True translocation 10737503 10738632 2431 1303 CM091763.1 scf7180000183325 99.74 True CONTIG scf7180000183325 2431 misassembled CONTIG scf7180000183326 489 unaligned 8972080 8973146 1067 1 CM091760.1 scf7180000183327 99.53 True translocation 4894614 4895316 1770 1068 CM091754.1 scf7180000183327 100.0 True CONTIG scf7180000183327 1770 misassembled 10821044 10822107 1 1065 CM091762.1 scf7180000183328 99.81 True CONTIG scf7180000183328 1290 correct 16735114 16735682 1 569 CM091751.1 scf7180000183329 100.0 True translocation 150652 151530 582 1460 CM091757.1 scf7180000183329 99.89 True CONTIG scf7180000183329 1460 misassembled 1619340 1620092 743 1 CM091754.1 scf7180000183330 98.43 True translocation 5320105 5321104 744 1740 CM091756.1 scf7180000183330 99.3 True CONTIG scf7180000183330 1740 misassembled CONTIG scf7180000183331 642 unaligned 11494199 11495510 1 1314 CM091754.1 scf7180000183332 99.47 True translocation 6431529 6432749 2535 1315 CM091766.1 scf7180000183332 99.76 True CONTIG scf7180000183332 2554 misassembled 7619427 7620150 723 1 CM091753.1 scf7180000183333 99.03 True CONTIG scf7180000183333 723 correct 11852612 11854071 1 1460 CM091755.1 scf7180000183334 99.93 True CONTIG scf7180000183334 1558 correct 3260467 3261396 930 1 CM091768.1 scf7180000183335 99.48 True translocation 4668062 4669172 2047 931 CM091758.1 scf7180000183335 99.1 True CONTIG scf7180000183335 2047 misassembled 471363 472637 1274 1 CM091754.1 scf7180000183336 99.53 True CONTIG scf7180000183336 1438 correct 1413851 1414842 992 1 CM091766.1 scf7180000183337 99.8 True translocation 14803738 14804354 993 1609 CM091753.1 scf7180000183337 99.52 True CONTIG scf7180000183337 1609 misassembled 1246593 1247280 688 1 CM091763.1 scf7180000183338 99.85 True CONTIG scf7180000183338 689 correct CONTIG scf7180000183339 313 unaligned 4271946 4272897 3 954 CM091760.1 scf7180000183340 99.18 True translocation 15656278 15657369 955 2047 CM091753.1 scf7180000183340 99.36 True CONTIG scf7180000183340 2047 misassembled 4013620 4015013 1 1394 CM091766.1 scf7180000183341 99.64 True CONTIG scf7180000183341 1599 correct 9464617 9465753 97 1233 CM091759.1 scf7180000183342 99.91 True CONTIG scf7180000183342 1233 correct 5168468 5169438 1 971 CM091768.1 scf7180000183343 100.0 True CONTIG scf7180000183343 1074 correct 7459511 7460944 1448 14 CM091758.1 scf7180000183344 99.65 True CONTIG scf7180000183344 1702 correct CONTIG scf7180000183345 327 unaligned 1548519 1550327 1815 1 CM091763.1 scf7180000183346 99.67 True CONTIG scf7180000183346 2077 correct 14791867 14793270 1404 1 CM091758.1 scf7180000183347 99.29 True CONTIG scf7180000183347 1551 correct 1141333 1142500 1294 122 CM091752.1 scf7180000183348 98.72 True CONTIG scf7180000183348 1294 correct 3421523 3422887 1365 1 CM091757.1 scf7180000183349 99.63 True CONTIG scf7180000183349 1365 correct 14937574 14938095 8 530 CM091758.1 scf7180000183350 98.47 True CONTIG scf7180000183350 530 correct 13380731 13381909 95 1273 CM091757.1 scf7180000183351 100.0 True CONTIG scf7180000183351 1273 correct 498437 500299 1 1863 CM091763.1 scf7180000183352 99.95 True translocation 2557449 2558140 2555 1864 CM091756.1 scf7180000183352 99.72 True CONTIG scf7180000183352 2555 misassembled 18139888 18141424 3 1541 CM091751.1 scf7180000183353 99.42 True CONTIG scf7180000183353 1816 correct 10861448 10862511 1 1063 CM091765.1 scf7180000183354 99.72 True CONTIG scf7180000183354 1185 correct 4352753 4353663 916 6 CM091754.1 scf7180000183355 100.0 True CONTIG scf7180000183355 916 correct 8735431 8737215 1787 1 CM091761.1 scf7180000183356 99.61 True translocation 19083928 19084880 2739 1788 CM091751.1 scf7180000183356 99.27 True CONTIG scf7180000183356 2739 misassembled CONTIG scf7180000183357 440 unaligned 5116883 5118068 1173 1 CM091767.1 scf7180000183358 98.31 True CONTIG scf7180000183358 1302 correct 10272071 10273122 1 1052 CM091751.1 scf7180000183359 99.9 True translocation 10063629 10064513 1053 1937 CM091754.1 scf7180000183359 99.89 True CONTIG scf7180000183359 1937 misassembled CONTIG scf7180000183360 718 unaligned 801234 802016 471 1254 CM091754.1 scf7180000183361 98.35 True CONTIG scf7180000183361 1254 correct 3071864 3072924 1061 1 CM091756.1 scf7180000183362 99.62 True translocation 12510858 12512843 3064 1063 CM091751.1 scf7180000183362 98.6 True CONTIG scf7180000183362 3064 misassembled 3259366 3260270 1 905 CM091752.1 scf7180000183363 100.0 True CONTIG scf7180000183363 987 correct 9984031 9985737 1 1707 CM091751.1 scf7180000183364 99.82 True CONTIG scf7180000183364 2024 correct CONTIG scf7180000183365 436 unaligned CONTIG scf7180000183366 304 unaligned CONTIG scf7180000183367 393 unaligned 13111431 13114566 1 3142 CM091759.1 scf7180000183368 99.3 True CONTIG scf7180000183368 3142 correct 9616949 9617992 1 1048 CM091755.1 scf7180000183369 99.35 True translocation 9821181 9822565 2434 1049 CM091766.1 scf7180000183369 99.93 True CONTIG scf7180000183369 2434 misassembled 3110186 3111358 1180 1 CM091768.1 scf7180000183370 97.89 True CONTIG scf7180000183370 1353 correct 4721624 4723458 1835 1 CM091754.1 scf7180000183371 100.0 True CONTIG scf7180000183371 1990 correct 5132675 5133346 672 1 CM091760.1 scf7180000183372 99.4 True CONTIG scf7180000183372 757 correct 1042919 1043838 919 1 CM091752.1 scf7180000183373 99.46 True CONTIG scf7180000183373 1089 correct 10349022 10349973 1 953 CM091756.1 scf7180000183374 99.59 True translocation 3830327 3831419 2047 954 CM091765.1 scf7180000183374 99.82 True CONTIG scf7180000183374 2047 misassembled 16648837 16649651 1 815 CM091756.1 scf7180000183375 99.88 True CONTIG scf7180000183375 1125 correct CONTIG scf7180000183376 389 unaligned 10908825 10909898 1074 1 CM091760.1 scf7180000183377 99.53 True translocation 3280215 3281187 2047 1075 CM091754.1 scf7180000183377 99.4 True CONTIG scf7180000183377 2047 misassembled 11588572 11589281 1 710 CM091763.1 scf7180000183378 99.86 True CONTIG scf7180000183378 776 correct 4258835 4260762 1940 13 CM091753.1 scf7180000183379 99.64 True CONTIG scf7180000183379 2052 correct CONTIG scf7180000183380 659 unaligned 9040036 9041315 1323 33 CM091759.1 scf7180000183381 98.3 True CONTIG scf7180000183381 1323 correct CONTIG scf7180000183382 367 unaligned 562601 564572 1972 1 CM091768.1 scf7180000183383 100.0 True CONTIG scf7180000183383 2179 correct CONTIG scf7180000183384 458 unaligned 8771569 8773504 1 1936 CM091761.1 scf7180000183385 99.95 True CONTIG scf7180000183385 1999 correct 15388056 15388635 585 1 CM091752.1 scf7180000183386 97.09 True CONTIG scf7180000183386 606 correct 413926 414948 1 1023 CM091752.1 scf7180000183387 99.02 True CONTIG scf7180000183387 1236 correct 10118722 10119865 1144 1 CM091765.1 scf7180000183388 99.91 True CONTIG scf7180000183388 1276 correct CONTIG scf7180000183389 394 unaligned CONTIG scf7180000183390 413 unaligned 7500722 7502379 98 1755 CM091764.1 scf7180000183391 99.82 True CONTIG scf7180000183391 1755 correct 13233082 13234654 1564 1 CM091760.1 scf7180000183392 98.73 True translocation 15432777 15433652 2452 1577 CM091759.1 scf7180000183392 100.0 True CONTIG scf7180000183392 2452 misassembled 443754 444678 925 1 CM091763.1 scf7180000183393 100.0 True CONTIG scf7180000183393 1169 correct 13818656 13819630 1005 32 CM091754.1 scf7180000183394 99.38 True CONTIG scf7180000183394 1494 correct CONTIG scf7180000183395 556 unaligned CONTIG scf7180000183396 319 unaligned 279746 281026 1282 1 CM091762.1 scf7180000183397 98.91 True CONTIG scf7180000183397 1297 correct 4317759 4318358 11 609 CM091763.1 scf7180000183398 98.83 True translocation 18348523 18350455 2544 612 CM091753.1 scf7180000183398 99.74 True CONTIG scf7180000183398 2544 misassembled 421842 423111 1270 1 CM091764.1 scf7180000183399 99.92 True CONTIG scf7180000183399 1270 correct CONTIG scf7180000183400 316 unaligned CONTIG scf7180000183401 486 unaligned 6059343 6060339 1 997 CM091761.1 scf7180000183402 99.8 True CONTIG scf7180000183402 1317 correct 17627377 17628743 1 1369 CM091751.1 scf7180000183403 99.64 True translocation 6016022 6016699 1370 2047 CM091768.1 scf7180000183403 100.0 True CONTIG scf7180000183403 2047 misassembled 17080774 17081665 890 1 CM091753.1 scf7180000183404 98.77 True CONTIG scf7180000183404 890 correct CONTIG scf7180000183405 410 unaligned 249895 251343 1 1450 CM091752.1 scf7180000183406 99.93 True CONTIG scf7180000183406 1452 correct CONTIG scf7180000183407 464 unaligned 13759583 13761358 1776 1 CM091759.1 scf7180000183408 99.61 True translocation 11855899 11856885 2763 1777 CM091760.1 scf7180000183408 100.0 True CONTIG scf7180000183408 2763 misassembled 1879323 1881491 2231 73 CM091768.1 scf7180000183409 98.76 True CONTIG scf7180000183409 2239 correct 3480270 3480877 1 608 CM091754.1 scf7180000183410 99.51 True CONTIG scf7180000183410 887 correct CONTIG scf7180000183411 300 unaligned 6526541 6528357 1 1819 CM091754.1 scf7180000183412 99.89 True translocation 4492929 4493762 1820 2653 CM091765.1 scf7180000183412 99.53 True CONTIG scf7180000183412 2653 misassembled 4244249 4244777 529 1 CM091762.1 scf7180000183413 100.0 True CONTIG scf7180000183413 911 correct 3294549 3296081 1 1534 CM091766.1 scf7180000183414 99.67 True CONTIG scf7180000183414 1622 correct 2580964 2581852 1 888 CM091757.1 scf7180000183415 99.33 True CONTIG scf7180000183415 1082 correct 288938 289666 1 730 CM091752.1 scf7180000183416 99.04 True CONTIG scf7180000183416 938 correct 18685649 18687023 1414 40 CM091751.1 scf7180000183417 99.35 True CONTIG scf7180000183417 1875 correct 6722586 6724178 1595 1 CM091754.1 scf7180000183418 99.5 True CONTIG scf7180000183418 1899 correct 5195363 5196468 1 1107 CM091756.1 scf7180000183419 99.82 True translocation 6581551 6583526 3067 1108 CM091764.1 scf7180000183419 98.79 True CONTIG scf7180000183419 3067 misassembled 11045913 11047255 1432 90 CM091760.1 scf7180000183420 99.78 True CONTIG scf7180000183420 1432 correct 14069606 14070935 1532 202 CM091758.1 scf7180000183421 99.55 True CONTIG scf7180000183421 1532 correct CONTIG scf7180000183422 398 unaligned 1965771 1967303 1 1531 CM091768.1 scf7180000183423 98.89 True CONTIG scf7180000183423 1588 correct 5403770 5404976 1207 1 CM091759.1 scf7180000183424 99.92 True CONTIG scf7180000183424 1368 correct 926912 928422 1 1512 CM091768.1 scf7180000183425 99.01 True CONTIG scf7180000183425 1689 correct 3222671 3223966 1 1298 CM091756.1 scf7180000183426 99.61 True translocation 1259043 1260066 1299 2321 CM091764.1 scf7180000183426 99.34 True CONTIG scf7180000183426 2321 misassembled 15604211 15604825 2043 1429 CM091758.1 scf7180000183427 99.51 True CONTIG scf7180000183427 2062 correct_unaligned 3486376 3487544 1170 1 CM091768.1 scf7180000183428 99.32 True translocation 789543 790215 1842 1171 CM091754.1 scf7180000183428 99.0 True CONTIG scf7180000183428 1842 misassembled CONTIG scf7180000183429 332 unaligned 3451554 3452707 1 1153 CM091754.1 scf7180000183430 99.22 True CONTIG scf7180000183430 1238 correct 11834918 11836694 1 1759 CM091761.1 scf7180000183431 98.93 True translocation 14684643 14685441 2559 1760 CM091753.1 scf7180000183431 99.63 True CONTIG scf7180000183431 2559 misassembled 3896696 3897668 1 973 CM091764.1 scf7180000183432 100.0 True CONTIG scf7180000183432 1130 correct CONTIG scf7180000183433 423 unaligned 12338520 12340000 1 1481 CM091756.1 scf7180000183434 99.66 True CONTIG scf7180000183434 1481 correct 6970317 6972119 1804 1 CM091758.1 scf7180000183435 99.83 True CONTIG scf7180000183435 2047 correct 983450 984231 1 782 CM091758.1 scf7180000183436 99.87 True translocation 4271150 4272414 783 2047 CM091756.1 scf7180000183436 99.29 True CONTIG scf7180000183436 2047 misassembled 4266344 4267426 4 1087 CM091755.1 scf7180000183437 99.72 True CONTIG scf7180000183437 1161 correct 18404067 18405459 1518 117 CM091753.1 scf7180000183438 99.07 True CONTIG scf7180000183438 1531 correct CONTIG scf7180000183439 360 unaligned 2484982 2486674 1680 1 CM091766.1 scf7180000183440 98.47 True CONTIG scf7180000183440 2019 correct CONTIG scf7180000183441 288 unaligned 6094464 6096044 1 1581 CM091764.1 scf7180000183442 99.81 True translocation 5258409 5259673 2847 1582 CM091766.1 scf7180000183442 99.29 True CONTIG scf7180000183442 2859 misassembled CONTIG scf7180000183443 352 unaligned 16237242 16238178 937 1 CM091752.1 scf7180000183444 98.83 True CONTIG scf7180000183444 937 correct CONTIG scf7180000183445 338 unaligned CONTIG scf7180000183446 300 unaligned 13523688 13525003 1 1316 CM091758.1 scf7180000183447 100.0 True CONTIG scf7180000183447 1346 correct 2230497 2231787 1291 1 CM091768.1 scf7180000183448 99.85 True translocation 2840321 2841244 1292 2217 CM091760.1 scf7180000183448 99.58 True CONTIG scf7180000183448 2217 misassembled 8800770 8802037 1 1276 CM091755.1 scf7180000183449 98.98 True CONTIG scf7180000183449 1371 correct 5557533 5558406 876 1 CM091756.1 scf7180000183450 99.66 True CONTIG scf7180000183450 1158 correct 4950979 4952010 193 1203 CM091758.1 scf7180000183451 97.48 True CONTIG scf7180000183451 1203 correct CONTIG scf7180000183452 587 unaligned 1854912 1855432 521 1 CM091764.1 scf7180000183453 99.42 True CONTIG scf7180000183453 703 correct 15870375 15870992 638 21 CM091757.1 scf7180000183454 99.19 True CONTIG scf7180000183454 638 correct 3088604 3089978 1 1375 CM091764.1 scf7180000183455 99.85 True CONTIG scf7180000183455 1375 correct CONTIG scf7180000183456 343 unaligned 19513661 19515035 1376 1 CM091751.1 scf7180000183457 99.13 True CONTIG scf7180000183457 1382 correct 5788210 5789281 1 1069 CM091765.1 scf7180000183458 99.63 True translocation 5845156 5845699 1070 1620 CM091759.1 scf7180000183458 98.09 True CONTIG scf7180000183458 1642 misassembled 57049 58291 1242 1 CM091767.1 scf7180000183459 99.92 True translocation 3013267 3014892 2868 1243 CM091760.1 scf7180000183459 99.57 True CONTIG scf7180000183459 2868 misassembled 8511243 8512197 1 956 CM091753.1 scf7180000183460 99.69 True translocation 3065184 3066266 2047 957 CM091766.1 scf7180000183460 99.08 True CONTIG scf7180000183460 2047 misassembled CONTIG scf7180000183461 318 unaligned 8761326 8763252 1930 1 CM091762.1 scf7180000183462 99.74 True translocation 16592526 16593644 1931 3047 CM091754.1 scf7180000183462 99.47 True CONTIG scf7180000183462 3047 misassembled 4029186 4030201 467 1482 CM091768.1 scf7180000183463 100.0 True CONTIG scf7180000183463 1482 correct 14107942 14112114 1 4171 CM091760.1 scf7180000183464 99.47 True CONTIG scf7180000183464 4171 correct 9783373 9784096 726 1 CM091756.1 scf7180000183465 99.04 True CONTIG scf7180000183465 759 correct 12461806 12462667 1 862 CM091751.1 scf7180000183466 99.78 True translocation 15991353 15992537 863 2047 CM091756.1 scf7180000183466 100.0 True CONTIG scf7180000183466 2047 misassembled 7234681 7236583 1 1899 CM091765.1 scf7180000183467 98.9 True CONTIG scf7180000183467 1973 correct CONTIG scf7180000183468 354 unaligned 8272768 8273605 838 1 CM091754.1 scf7180000183469 99.88 True CONTIG scf7180000183469 2182 correct_unaligned 5850306 5851442 1131 1 CM091763.1 scf7180000183470 99.03 True CONTIG scf7180000183470 1239 correct CONTIG scf7180000183471 335 unaligned CONTIG scf7180000183472 506 unaligned 15326619 15327554 1 936 CM091758.1 scf7180000183473 99.25 True CONTIG scf7180000183473 962 correct 39689 40558 1 871 CM091753.1 scf7180000183474 99.77 True CONTIG scf7180000183474 986 correct 3704604 3705736 1139 1 CM091761.1 scf7180000183475 98.42 True CONTIG scf7180000183475 1191 correct 1299881 1301417 1548 1 CM091768.1 scf7180000183476 98.64 True translocation 12848516 12849812 2845 1549 CM091756.1 scf7180000183476 99.62 True CONTIG scf7180000183476 2845 misassembled 1439264 1441055 1 1791 CM091762.1 scf7180000183477 99.89 True CONTIG scf7180000183477 2156 correct 13916522 13917813 1292 1 CM091755.1 scf7180000183478 99.54 True CONTIG scf7180000183478 1437 correct CONTIG scf7180000183479 434 unaligned 137888 138692 1 805 CM091758.1 scf7180000183480 100.0 True CONTIG scf7180000183480 993 correct 9362187 9363008 822 1 CM091760.1 scf7180000183481 99.88 True CONTIG scf7180000183481 992 correct 13682942 13683913 10 981 CM091751.1 scf7180000183482 99.5 True translocation 7782698 7783762 2047 982 CM091762.1 scf7180000183482 99.62 True CONTIG scf7180000183482 2047 misassembled 5985359 5986304 28 974 CM091765.1 scf7180000183483 99.47 True CONTIG scf7180000183483 1068 correct 1752965 1753469 8 512 CM091768.1 scf7180000183484 100.0 True CONTIG scf7180000183484 512 correct 10670302 10671064 763 1 CM091751.1 scf7180000183485 99.34 True CONTIG scf7180000183485 834 correct CONTIG scf7180000183486 314 unaligned 15415735 15416568 1 834 CM091754.1 scf7180000183487 99.88 True CONTIG scf7180000183487 890 correct CONTIG scf7180000183488 401 unaligned CONTIG scf7180000183489 346 unaligned 7375962 7377150 1189 1 CM091765.1 scf7180000183490 99.66 True translocation 7087381 7088171 1980 1190 CM091762.1 scf7180000183490 99.5 True CONTIG scf7180000183490 1980 misassembled 12557848 12559027 1180 1 CM091751.1 scf7180000183491 99.83 True CONTIG scf7180000183491 1229 correct 15015604 15017363 1 1762 CM091758.1 scf7180000183492 99.89 True CONTIG scf7180000183492 1847 correct 13118594 13119525 934 3 CM091751.1 scf7180000183493 99.57 True CONTIG scf7180000183493 1046 correct 16659016 16659694 1164 484 CM091751.1 scf7180000183494 99.71 True CONTIG scf7180000183494 1164 correct 13975369 13976418 19 1069 CM091753.1 scf7180000183495 99.72 True relocation, inconsistency = 8913484 5059922 5061884 3029 1070 CM091753.1 scf7180000183495 99.19 True CONTIG scf7180000183495 3029 misassembled 9744722 9745538 1 817 CM091759.1 scf7180000183496 100.0 True translocation 9622574 9623803 818 2047 CM091760.1 scf7180000183496 100.0 True CONTIG scf7180000183496 2047 misassembled 13151146 13151709 612 49 CM091751.1 scf7180000183497 99.82 True CONTIG scf7180000183497 612 correct CONTIG scf7180000183498 324 unaligned 8574314 8575536 1222 1 CM091755.1 scf7180000183499 99.1 True CONTIG scf7180000183499 1320 correct 3252988 3256097 3111 1 CM091765.1 scf7180000183500 99.39 True CONTIG scf7180000183500 3111 correct 4463629 4464278 660 1 CM091767.1 scf7180000183501 96.37 True CONTIG scf7180000183501 661 correct CONTIG scf7180000183502 325 unaligned 5380045 5381361 1317 1 CM091754.1 scf7180000183503 100.0 True translocation 9374631 9376366 1318 3057 CM091764.1 scf7180000183503 98.91 True CONTIG scf7180000183503 3057 misassembled 4107145 4107866 235 956 CM091768.1 scf7180000183504 100.0 True CONTIG scf7180000183504 956 correct 5468253 5470099 1855 1 CM091765.1 scf7180000183505 99.19 True translocation 5884048 5885260 1856 3068 CM091758.1 scf7180000183505 99.76 True CONTIG scf7180000183505 3068 misassembled 7156522 7157704 1676 494 CM091756.1 scf7180000183506 99.92 True CONTIG scf7180000183506 1676 correct 4271468 4272581 1 1114 CM091762.1 scf7180000183507 99.55 True CONTIG scf7180000183507 1190 correct 13191713 13193235 1 1523 CM091757.1 scf7180000183508 100.0 True translocation 10708978 10709752 1524 2299 CM091765.1 scf7180000183508 99.75 True CONTIG scf7180000183508 2299 misassembled 1379340 1381250 1910 1 CM091754.1 scf7180000183509 99.84 True CONTIG scf7180000183509 1957 correct CONTIG scf7180000183510 356 unaligned CONTIG scf7180000183511 468 unaligned 2318172 2319229 1058 1 CM091752.1 scf7180000183512 98.58 True CONTIG scf7180000183512 1178 correct CONTIG scf7180000183513 230 unaligned 66348 67010 1 663 CM091767.1 scf7180000183514 100.0 True CONTIG scf7180000183514 805 correct 322809 323444 1 635 CM091766.1 scf7180000183515 99.84 True CONTIG scf7180000183515 900 correct 12587746 12588787 1249 208 CM091755.1 scf7180000183516 99.81 True CONTIG scf7180000183516 1249 correct 10863807 10864525 719 1 CM091760.1 scf7180000183517 99.73 True translocation 10052083 10053408 720 2047 CM091754.1 scf7180000183517 99.62 True CONTIG scf7180000183517 2047 misassembled 13487028 13489057 1 2031 CM091755.1 scf7180000183518 99.31 True CONTIG scf7180000183518 2163 correct 133157 134401 1245 1 CM091763.1 scf7180000183519 99.92 True CONTIG scf7180000183519 1422 correct CONTIG scf7180000183520 465 unaligned 12815947 12819037 3101 6 CM091751.1 scf7180000183521 99.39 True CONTIG scf7180000183521 3101 correct 12815950 12817760 1812 1 CM091751.1 scf7180000183522 99.45 True CONTIG scf7180000183522 2119 correct 5219965 5220546 1 582 CM091761.1 scf7180000183523 100.0 True CONTIG scf7180000183523 773 correct 15616203 15618026 1843 20 CM091753.1 scf7180000183524 99.78 True CONTIG scf7180000183524 1929 correct CONTIG scf7180000183525 382 unaligned CONTIG scf7180000183526 504 unaligned 6304374 6305937 1 1566 CM091756.1 scf7180000183527 99.62 True translocation 1399308 1400460 2719 1567 CM091768.1 scf7180000183527 99.83 True CONTIG scf7180000183527 2722 misassembled 10892198 10893329 1 1135 CM091759.1 scf7180000183528 99.21 True CONTIG scf7180000183528 1265 correct 11363548 11364759 1 1212 CM091761.1 scf7180000183529 100.0 True CONTIG scf7180000183529 1286 correct 3648061 3649582 1 1523 CM091766.1 scf7180000183530 99.67 True CONTIG scf7180000183530 1618 correct CONTIG scf7180000183531 303 unaligned CONTIG scf7180000183532 386 unaligned CONTIG scf7180000183533 869 unaligned 11659444 11661212 1 1761 CM091760.1 scf7180000183534 99.21 True CONTIG scf7180000183534 1842 correct 249895 251257 1 1364 CM091752.1 scf7180000183535 99.93 True CONTIG scf7180000183535 1496 correct 9051654 9052212 8 566 CM091755.1 scf7180000183536 99.28 True CONTIG scf7180000183536 705 correct 2388845 2389481 1 637 CM091764.1 scf7180000183537 99.69 True CONTIG scf7180000183537 732 correct 8646106 8647676 1572 1 CM091764.1 scf7180000183538 99.62 True relocation, inconsistency = 8498 8636567 8637607 2616 1573 CM091764.1 scf7180000183538 99.06 True CONTIG scf7180000183538 2616 misassembled 1818742 1820132 1405 32 CM091768.1 scf7180000183539 97.42 True CONTIG scf7180000183539 1472 correct 1792581 1793445 1 866 CM091763.1 scf7180000183540 99.54 True CONTIG scf7180000183540 866 correct CONTIG scf7180000183541 361 unaligned 7795736 7796431 1 696 CM091762.1 scf7180000183542 99.43 True CONTIG scf7180000183542 1182 correct 17080774 17081414 1 643 CM091753.1 scf7180000183543 99.38 True CONTIG scf7180000183543 887 correct 12841996 12843544 1549 1 CM091758.1 scf7180000183544 100.0 True translocation 1548184 1548893 1570 2281 CM091751.1 scf7180000183544 99.02 True CONTIG scf7180000183544 2281 misassembled CONTIG scf7180000183545 399 unaligned CONTIG scf7180000183546 372 unaligned 4018790 4020288 1 1504 CM091751.1 scf7180000183547 99.4 True relocation, inconsistency = 13486889 17507178 17508341 2667 1505 CM091751.1 scf7180000183547 99.92 True CONTIG scf7180000183547 2667 misassembled 673088 673714 115 742 CM091756.1 scf7180000183548 99.36 True CONTIG scf7180000183548 742 correct 10972361 10973252 1 896 CM091753.1 scf7180000183549 98.88 True CONTIG scf7180000183549 906 correct 2447872 2449521 1 1638 CM091754.1 scf7180000183550 97.4 True CONTIG scf7180000183550 1836 correct CONTIG scf7180000183551 326 unaligned CONTIG scf7180000183552 529 unaligned CONTIG scf7180000183553 367 unaligned 4575086 4576532 3 1454 CM091759.1 scf7180000183554 99.31 True translocation 8384184 8384718 2006 1473 CM091763.1 scf7180000183554 99.63 True CONTIG scf7180000183554 2006 misassembled 3055799 3056710 916 1 CM091751.1 scf7180000183555 99.56 True indel: indel (> 5bp) 3055206 3055756 1534 985 CM091751.1 scf7180000183555 99.46 True CONTIG scf7180000183555 1534 correct CONTIG scf7180000183556 661 unaligned CONTIG scf7180000183557 303 unaligned 2162100 2162792 56 750 CM091768.1 scf7180000183558 98.85 True CONTIG scf7180000183558 844 correct CONTIG scf7180000183559 465 unaligned 7596658 7597237 781 202 CM091755.1 scf7180000183560 99.48 True CONTIG scf7180000183560 781 correct 8524903 8525924 1022 1 CM091753.1 scf7180000183561 99.61 True CONTIG scf7180000183561 1380 correct 9008868 9009810 1 943 CM091756.1 scf7180000183562 99.05 True CONTIG scf7180000183562 1095 correct 13854283 13855172 892 1 CM091756.1 scf7180000183563 98.99 True CONTIG scf7180000183563 1120 correct 2315343 2316031 3 691 CM091768.1 scf7180000183564 99.71 True CONTIG scf7180000183564 871 correct 4601788 4602292 1 505 CM091754.1 scf7180000183565 100.0 True CONTIG scf7180000183565 775 correct 16251536 16252151 615 1 CM091752.1 scf7180000183566 98.54 True CONTIG scf7180000183566 615 correct 6621403 6622289 1153 268 CM091754.1 scf7180000183567 99.55 True CONTIG scf7180000183567 1153 correct 17455995 17456853 1 859 CM091751.1 scf7180000183568 100.0 True CONTIG scf7180000183568 1147 correct 367899 369138 1 1240 CM091765.1 scf7180000183569 99.84 True CONTIG scf7180000183569 1317 correct 8580111 8582018 1 1913 CM091762.1 scf7180000183570 99.53 True translocation 9770318 9771454 3051 1914 CM091759.1 scf7180000183570 99.74 True CONTIG scf7180000183570 3051 misassembled 3380830 3382548 1720 1 CM091757.1 scf7180000183571 99.42 True translocation 6470047 6471402 3076 1721 CM091760.1 scf7180000183571 99.78 True CONTIG scf7180000183571 3076 misassembled 5298399 5299415 1045 12 CM091763.1 scf7180000183572 97.88 True translocation 2432949 2434055 1046 2152 CM091754.1 scf7180000183572 99.82 True CONTIG scf7180000183572 2167 misassembled 6963745 6965421 1 1675 CM091751.1 scf7180000183573 99.34 True translocation 6629882 6630812 1690 2620 CM091766.1 scf7180000183573 98.93 True CONTIG scf7180000183573 2620 misassembled 7153293 7154466 1 1174 CM091767.1 scf7180000183574 99.49 True CONTIG scf7180000183574 1391 correct 5099740 5101185 1446 1 CM091751.1 scf7180000183575 99.03 True CONTIG scf7180000183575 1495 correct 3083073 3084639 1 1568 CM091762.1 scf7180000183576 99.17 True CONTIG scf7180000183576 1788 correct 7931349 7933337 1 1987 CM091756.1 scf7180000183577 99.25 True CONTIG scf7180000183577 2442 correct 10967122 10968016 950 56 CM091765.1 scf7180000183578 99.78 True CONTIG scf7180000183578 950 correct 16425855 16426460 1 606 CM091752.1 scf7180000183579 99.67 True CONTIG scf7180000183579 606 correct 9123401 9124366 966 1 CM091756.1 scf7180000183580 98.86 True CONTIG scf7180000183580 1063 correct 6234872 6236459 1589 1 CM091762.1 scf7180000183581 99.56 True CONTIG scf7180000183581 1821 correct CONTIG scf7180000183582 469 unaligned 2276984 2278474 1486 1 CM091762.1 scf7180000183583 99.6 True CONTIG scf7180000183583 1780 correct CONTIG scf7180000183584 527 unaligned 317174 317728 555 1 CM091763.1 scf7180000183585 100.0 True CONTIG scf7180000183585 787 correct CONTIG scf7180000183586 306 unaligned CONTIG scf7180000183587 445 unaligned 719584 720199 1 616 CM091760.1 scf7180000183588 99.68 True CONTIG scf7180000183588 952 correct CONTIG scf7180000183589 316 unaligned 5670754 5672021 1262 1 CM091762.1 scf7180000183590 99.38 True translocation 1249128 1250917 3052 1263 CM091768.1 scf7180000183590 100.0 True CONTIG scf7180000183590 3052 misassembled 1935926 1937116 1191 1 CM091757.1 scf7180000183591 99.66 True translocation 18472667 18473463 1988 1192 CM091751.1 scf7180000183591 99.39 True CONTIG scf7180000183591 1988 misassembled 19430470 19431824 1362 1 CM091751.1 scf7180000183592 98.75 True CONTIG scf7180000183592 1362 correct CONTIG scf7180000183593 391 unaligned 6160263 6160873 321 931 CM091768.1 scf7180000183594 100.0 True CONTIG scf7180000183594 931 correct 458848 460674 1 1828 CM091764.1 scf7180000183595 99.89 True CONTIG scf7180000183595 1938 correct CONTIG scf7180000183596 469 unaligned CONTIG scf7180000183597 345 unaligned CONTIG scf7180000183598 442 unaligned CONTIG scf7180000183599 431 unaligned CONTIG scf7180000183600 348 unaligned 655216 655895 1 680 CM091764.1 scf7180000183601 100.0 True relocation, inconsistency = 8290140 8946036 8946836 1481 681 CM091764.1 scf7180000183601 99.75 True CONTIG scf7180000183601 1481 misassembled 2344769 2345821 1053 1 CM091766.1 scf7180000183602 99.62 True CONTIG scf7180000183602 1372 correct CONTIG scf7180000183603 450 unaligned CONTIG scf7180000183604 315 unaligned 2775420 2777109 34 1718 CM091752.1 scf7180000183605 99.7 True CONTIG scf7180000183605 2043 correct CONTIG scf7180000183606 483 unaligned 16919928 16920536 1 608 CM091752.1 scf7180000183607 98.69 True CONTIG scf7180000183607 3496 correct_unaligned CONTIG scf7180000183608 437 unaligned CONTIG scf7180000183609 376 unaligned 4150504 4151068 1 560 CM091768.1 scf7180000183610 96.64 True CONTIG scf7180000183610 591 correct 7323805 7324374 1034 464 CM091754.1 scf7180000183611 99.82 True CONTIG scf7180000183611 1034 correct 948776 949667 892 1 CM091756.1 scf7180000183612 99.78 True translocation 2019453 2020564 936 2047 CM091760.1 scf7180000183612 99.91 True CONTIG scf7180000183612 2047 misassembled 10956515 10957986 381 1852 CM091764.1 scf7180000183613 99.8 True CONTIG scf7180000183613 1852 correct 8101954 8103256 292 1594 CM091766.1 scf7180000183614 99.69 True CONTIG scf7180000183614 1594 correct 16573046 16573872 840 16 CM091752.1 scf7180000183615 97.46 True CONTIG scf7180000183615 840 correct 2459708 2460905 51 1251 CM091768.1 scf7180000183616 99.5 True CONTIG scf7180000183616 1341 correct CONTIG scf7180000183617 487 unaligned CONTIG scf7180000183618 445 unaligned 5243184 5244401 1 1218 CM091768.1 scf7180000183619 100.0 True CONTIG scf7180000183619 1482 correct 18250249 18251856 1986 379 CM091751.1 scf7180000183620 99.56 True CONTIG scf7180000183620 1986 correct 6607562 6608309 744 1 CM091756.1 scf7180000183621 99.33 True CONTIG scf7180000183621 952 correct CONTIG scf7180000183622 415 unaligned 6655046 6656742 1697 1 CM091763.1 scf7180000183623 100.0 True CONTIG scf7180000183623 1789 correct CONTIG scf7180000183624 393 unaligned 7866735 7868509 1775 1 CM091764.1 scf7180000183625 99.15 True CONTIG scf7180000183625 2010 correct 4862075 4863277 1 1203 CM091751.1 scf7180000183626 99.83 True translocation 5316624 5317141 1707 1204 CM091765.1 scf7180000183626 96.88 True CONTIG scf7180000183626 1708 misassembled 47725 49449 1725 1 CM091760.1 scf7180000183627 100.0 True translocation 4352745 4353648 1726 2629 CM091754.1 scf7180000183627 100.0 True CONTIG scf7180000183627 2629 misassembled 10694662 10696449 1788 1 CM091766.1 scf7180000183628 99.66 True CONTIG scf7180000183628 2272 correct 2852244 2853229 986 1 CM091759.1 scf7180000183629 100.0 True CONTIG scf7180000183629 1168 correct 3495985 3497428 75 1518 CM091752.1 scf7180000183630 100.0 True CONTIG scf7180000183630 1518 correct CONTIG scf7180000183631 410 unaligned CONTIG scf7180000183632 579 unaligned CONTIG scf7180000183633 537 unaligned CONTIG scf7180000183634 584 unaligned CONTIG scf7180000183635 209 unaligned CONTIG scf7180000183636 352 unaligned 15189525 15190169 646 1 CM091755.1 scf7180000183637 99.69 True CONTIG scf7180000183637 739 correct CONTIG scf7180000183638 351 unaligned CONTIG scf7180000183639 312 unaligned 4309510 4310994 1486 1 CM091755.1 scf7180000183640 99.8 True CONTIG scf7180000183640 1486 correct 10297497 10299331 1 1836 CM091762.1 scf7180000183641 99.29 True CONTIG scf7180000183641 2124 correct CONTIG scf7180000183642 307 unaligned CONTIG scf7180000183643 318 unaligned CONTIG scf7180000183644 492 unaligned 7218626 7219605 980 1 CM091751.1 scf7180000183645 99.9 True CONTIG scf7180000183645 1254 correct 8599813 8600743 686 1604 CM091767.1 scf7180000183646 97.31 True CONTIG scf7180000183646 1604 correct 14826406 14827467 1062 1 CM091756.1 scf7180000183647 99.72 True translocation 1676649 1677205 1615 1063 CM091754.1 scf7180000183647 98.46 True CONTIG scf7180000183647 1628 misassembled CONTIG scf7180000183648 315 unaligned CONTIG scf7180000183649 416 unaligned 18569417 18570623 155 1364 CM091751.1 scf7180000183650 99.17 True CONTIG scf7180000183650 1364 correct CONTIG scf7180000183651 364 unaligned 3660793 3661462 3383 2714 CM091768.1 scf7180000183652 99.7 True CONTIG scf7180000183652 3383 correct_unaligned CONTIG scf7180000183653 766 unaligned CONTIG scf7180000183654 307 unaligned CONTIG scf7180000183655 329 unaligned CONTIG scf7180000183656 506 unaligned CONTIG scf7180000183657 3122 unaligned CONTIG scf7180000183658 369 unaligned 12391934 12392443 1 509 CM091759.1 scf7180000183659 99.8 True CONTIG scf7180000183659 509 correct 4376758 4377348 133 724 CM091752.1 scf7180000183660 97.13 True CONTIG scf7180000183660 724 correct CONTIG scf7180000183661 368 unaligned CONTIG scf7180000183662 495 unaligned CONTIG scf7180000183663 330 unaligned CONTIG scf7180000183664 327 unaligned 7400614 7401712 1 1099 CM091765.1 scf7180000183665 99.18 True translocation 14036923 14037869 2047 1100 CM091755.1 scf7180000183665 99.27 True CONTIG scf7180000183665 2047 misassembled 14495821 14496334 516 1 CM091752.1 scf7180000183666 97.29 True CONTIG scf7180000183666 527 correct CONTIG scf7180000183667 313 unaligned CONTIG scf7180000183668 363 unaligned CONTIG scf7180000183669 418 unaligned CONTIG scf7180000183670 394 unaligned CONTIG scf7180000183671 392 unaligned 1062453 1063437 1 985 CM091755.1 scf7180000183672 99.9 True CONTIG scf7180000183672 985 correct CONTIG scf7180000183673 1086 unaligned CONTIG scf7180000183674 317 unaligned CONTIG scf7180000183675 392 unaligned CONTIG scf7180000183676 330 unaligned CONTIG scf7180000183677 501 unaligned CONTIG scf7180000183678 329 unaligned CONTIG scf7180000183679 384 unaligned CONTIG scf7180000183680 346 unaligned 80385 81123 1 740 CM091758.1 scf7180000183681 99.73 True CONTIG scf7180000183681 1213 correct 6223084 6224969 1 1887 CM091760.1 scf7180000183682 98.73 True CONTIG scf7180000183682 2146 correct 55055 55708 1 654 CM091763.1 scf7180000183683 100.0 True CONTIG scf7180000183683 654 correct CONTIG scf7180000183684 328 unaligned 18385690 18387260 1 1571 CM091753.1 scf7180000183685 99.75 True CONTIG scf7180000183685 1884 correct CONTIG scf7180000183686 471 unaligned CONTIG scf7180000183687 318 unaligned 11205616 11207052 1463 27 CM091766.1 scf7180000183688 99.79 True CONTIG scf7180000183688 1463 correct CONTIG scf7180000183689 503 unaligned 18944905 18945884 981 1 CM091751.1 scf7180000183690 99.08 True CONTIG scf7180000183690 981 correct 6132282 6133446 1166 1 CM091761.1 scf7180000183691 99.4 True translocation 10978785 10979730 1167 2112 CM091751.1 scf7180000183691 99.59 True CONTIG scf7180000183691 2112 misassembled CONTIG scf7180000183692 485 unaligned CONTIG scf7180000183693 302 unaligned 302500 303230 731 1 CM091753.1 scf7180000183694 100.0 True CONTIG scf7180000183694 731 correct 12950925 12951488 1 564 CM091751.1 scf7180000183695 99.47 True CONTIG scf7180000183695 613 correct 2837160 2838913 1754 1 CM091764.1 scf7180000183696 99.94 True CONTIG scf7180000183696 1754 correct 11567254 11568951 1 1699 CM091764.1 scf7180000183697 99.53 True CONTIG scf7180000183697 1699 correct 6021722 6022882 15 1157 CM091762.1 scf7180000183698 97.26 True CONTIG scf7180000183698 1157 correct 7396530 7397558 1032 4 CM091763.1 scf7180000183699 99.51 True CONTIG scf7180000183699 1319 correct 19010215 19012260 1 2047 CM091751.1 scf7180000183700 99.32 True CONTIG scf7180000183700 2047 correct 1751873 1752395 537 1 CM091766.1 scf7180000183701 97.21 True CONTIG scf7180000183701 537 correct 8013117 8013977 861 1 CM091758.1 scf7180000183702 100.0 True CONTIG scf7180000183702 861 correct 3994670 3996712 1 2042 CM091763.1 scf7180000183703 99.85 True CONTIG scf7180000183703 2047 correct 3994819 3996750 1 1931 CM091763.1 scf7180000183704 99.79 True CONTIG scf7180000183704 1931 correct 125974 131610 5643 1 CM091765.1 scf7180000183705 99.65 True CONTIG scf7180000183705 5712 correct 9114437 9116337 1 1901 CM091758.1 scf7180000183706 99.74 True CONTIG scf7180000183706 1912 correct CONTIG scf7180000183707 474 unaligned 13731493 13732534 1 1042 CM091758.1 scf7180000183708 100.0 True CONTIG scf7180000183708 1042 correct 12304347 12306395 2047 1 CM091754.1 scf7180000183709 99.46 True CONTIG scf7180000183709 2047 correct 12304218 12306266 2047 1 CM091754.1 scf7180000183710 99.46 True CONTIG scf7180000183710 2047 correct 10896133 10897226 1 1094 CM091755.1 scf7180000183711 99.36 True CONTIG scf7180000183711 1094 correct 10896376 10897317 1 942 CM091755.1 scf7180000183712 99.15 True CONTIG scf7180000183712 942 correct 12537245 12538281 1 1036 CM091751.1 scf7180000183713 99.13 True CONTIG scf7180000183713 1036 correct CONTIG scf7180000183714 7863 unaligned 16279318 16281364 2047 1 CM091751.1 scf7180000183715 99.95 True CONTIG scf7180000183715 2047 correct 16279014 16281024 2011 1 CM091751.1 scf7180000183716 99.95 True CONTIG scf7180000183716 2011 correct 10084088 10086104 2035 19 CM091763.1 scf7180000183717 99.55 True CONTIG scf7180000183717 2047 correct 10083998 10085624 1630 1 CM091763.1 scf7180000183718 99.2 True CONTIG scf7180000183718 1630 correct 5598931 5599792 1 864 CM091751.1 scf7180000183719 99.31 True CONTIG scf7180000183719 864 correct 3000785 3002215 1431 1 CM091755.1 scf7180000183720 99.79 True CONTIG scf7180000183720 1431 correct 16346043 16346824 790 9 CM091752.1 scf7180000183721 98.59 True CONTIG scf7180000183721 807 correct 7982922 7984309 20 1407 CM091767.1 scf7180000183722 100.0 True CONTIG scf7180000183722 1430 correct 2308451 2313119 4676 5 CM091767.1 scf7180000183723 99.27 True fake: scaffold gap size wrong estimation (local) 2306254 2308276 6822 4801 CM091767.1 scf7180000183723 99.41 True fake: scaffold gap size wrong estimation (local) 2295142 2305251 17520 7390 CM091767.1 scf7180000183723 99.37 True indel: indel (<= 5bp) 2261135 2295110 51952 17551 CM091767.1 scf7180000183723 98.28 True fake: scaffold gap size wrong estimation (local) 2232620 2260895 80289 52143 CM091767.1 scf7180000183723 99.06 True fake: scaffold gap size wrong estimation (local) 2216776 2232240 95612 80508 CM091767.1 scf7180000183723 96.91 True local misassembly 2178277 2216374 133873 95779 CM091767.1 scf7180000183723 99.4 True indel: indel (> 5bp) 2148763 2178177 163351 133999 CM091767.1 scf7180000183723 98.81 True CONTIG scf7180000183723 163362 correct 1266171 1274841 8639 10 CM091753.1 scf7180000183724 99.42 True CONTIG scf7180000183724 8639 correct 4461771 4462928 1162 1 CM091754.1 scf7180000183725 99.14 True CONTIG scf7180000183725 1162 correct 6419471 6420169 699 1 CM091768.1 scf7180000183726 99.71 True CONTIG scf7180000183726 699 correct 2746042 2747194 1153 1 CM091755.1 scf7180000183727 99.91 True CONTIG scf7180000183727 1153 correct 3654890 3657136 1 2262 CM091764.1 scf7180000183728 98.45 True CONTIG scf7180000183728 2399 correct 3126622 3127988 1368 1 CM091752.1 scf7180000183729 99.93 True CONTIG scf7180000183729 1368 correct CONTIG scf7180000183730 877 unaligned 4297329 4298108 780 1 CM091754.1 scf7180000183731 99.87 True CONTIG scf7180000183731 780 correct CONTIG scf7180000183732 984 unaligned 16730530 16731229 1 702 CM091752.1 scf7180000183733 98.72 True CONTIG scf7180000183733 737 correct 313511 314727 1 1218 CM091764.1 scf7180000183734 99.34 True CONTIG scf7180000183734 1258 correct 8199380 8200123 1 744 CM091767.1 scf7180000183735 100.0 True CONTIG scf7180000183735 752 correct 10918850 10919745 53 948 CM091765.1 scf7180000183736 99.89 True CONTIG scf7180000183736 948 correct 12226741 12227548 1 806 CM091752.1 scf7180000183737 99.26 True CONTIG scf7180000183737 806 correct 473530 476055 2525 1 CM091752.1 scf7180000183738 99.96 True CONTIG scf7180000183738 2525 correct CONTIG scf7180000183739 672 unaligned 17360597 17361235 648 13 CM091752.1 scf7180000183740 99.37 True CONTIG scf7180000183740 648 correct CONTIG scf7180000183741 571 unaligned CONTIG scf7180000183742 1029 unaligned 6638994 6639569 576 1 CM091768.1 scf7180000183743 100.0 True CONTIG scf7180000183743 576 correct 4589075 4589825 32 782 CM091768.1 scf7180000183744 100.0 True CONTIG scf7180000183744 782 correct 2215179 2215720 543 1 CM091768.1 scf7180000183745 98.71 True CONTIG scf7180000183745 606 correct 2904851 2905507 1 657 CM091762.1 scf7180000183746 100.0 True CONTIG scf7180000183746 657 correct CONTIG scf7180000183747 1069 unaligned CONTIG scf7180000183748 415 unaligned 112292 113048 7 762 CM091764.1 scf7180000183749 98.81 True CONTIG scf7180000183749 762 correct 17380430 17381137 1 708 CM091751.1 scf7180000183750 100.0 True CONTIG scf7180000183750 811 correct 16196462 16197022 561 1 CM091757.1 scf7180000183751 99.64 True CONTIG scf7180000183751 561 correct 11456307 11457068 324 1085 CM091765.1 scf7180000183752 99.74 True CONTIG scf7180000183752 1086 correct CONTIG scf7180000183753 444 unaligned 8601065 8601608 550 6 CM091767.1 scf7180000183754 98.53 True CONTIG scf7180000183754 550 correct 3635181 3635715 1 535 CM091768.1 scf7180000183755 99.07 True CONTIG scf7180000183755 535 correct 10444319 10444896 594 17 CM091752.1 scf7180000183756 100.0 True CONTIG scf7180000183756 594 correct CONTIG scf7180000183757 498 unaligned CONTIG scf7180000183758 498 unaligned 2013375 2013928 1 554 CM091764.1 scf7180000183759 100.0 True CONTIG scf7180000183759 554 correct CONTIG scf7180000183760 414 unaligned 8478334 8478992 1 659 CM091767.1 scf7180000183761 100.0 True CONTIG scf7180000183761 663 correct 15325612 15326398 787 1 CM091752.1 scf7180000183762 98.86 True CONTIG scf7180000183762 816 correct 16351355 16352124 100 870 CM091756.1 scf7180000183763 99.61 True CONTIG scf7180000183763 870 correct 1885467 1886031 565 1 CM091764.1 scf7180000183764 99.65 True CONTIG scf7180000183764 565 correct 15100223 15100734 516 1 CM091752.1 scf7180000183765 97.68 True CONTIG scf7180000183765 516 correct CONTIG scf7180000183766 483 unaligned 18561477 18562322 46 890 CM091751.1 scf7180000183767 98.35 True CONTIG scf7180000183767 914 correct CONTIG scf7180000183768 453 unaligned CONTIG scf7180000183769 552 unaligned CONTIG scf7180000183770 27572 unaligned CONTIG scf7180000183771 542 unaligned 10408852 10410107 1 1256 CM091753.1 scf7180000183772 100.0 True translocation 10825440 10828124 1257 3940 CM091755.1 scf7180000183772 99.48 True CONTIG scf7180000183772 3952 misassembled 6625921 6626751 830 1 CM091768.1 scf7180000183773 98.68 True CONTIG scf7180000183773 834 correct 3668347 3669573 1 1226 CM091768.1 scf7180000183774 99.1 True CONTIG scf7180000183774 1311 correct CONTIG scf7180000183775 552 unaligned CONTIG scf7180000183776 1236 unaligned 15325188 15325791 625 21 CM091752.1 scf7180000183777 98.68 True CONTIG scf7180000183777 644 correct 12314623 12315138 649 134 CM091756.1 scf7180000183778 99.42 True CONTIG scf7180000183778 649 correct 17367325 17368566 47 1287 CM091752.1 scf7180000183779 98.72 True CONTIG scf7180000183779 1287 correct CONTIG scf7180000183780 609 unaligned CONTIG scf7180000183781 517 unaligned CONTIG scf7180000183782 518 unaligned CONTIG scf7180000183783 933 unaligned 3066005 3067080 1078 1 CM091752.1 scf7180000183784 99.44 True CONTIG scf7180000183784 1078 correct 6727522 6728488 1 971 CM091768.1 scf7180000183785 95.78 True CONTIG scf7180000183785 982 correct 13816829 13817548 720 1 CM091752.1 scf7180000183786 100.0 True CONTIG scf7180000183786 786 correct 8602918 8603751 835 1 CM091767.1 scf7180000183787 99.52 True CONTIG scf7180000183787 904 correct CONTIG scf7180000183788 431 unaligned 3279998 3285337 5380 37 CM091757.1 scf7180000183789 98.99 True relocation, inconsistency = -7037 3286461 3287034 5954 5381 CM091757.1 scf7180000183789 97.86 True CONTIG scf7180000183789 5954 misassembled 9188077 9189399 227 1547 CM091767.1 scf7180000183790 99.77 True CONTIG scf7180000183790 1547 correct 7006533 7007077 1 546 CM091757.1 scf7180000183791 98.9 True CONTIG scf7180000183791 546 correct 11449604 11451562 2008 19 CM091765.1 scf7180000183792 99.29 True CONTIG scf7180000183792 3791 correct 14522202 14524236 1 2040 CM091752.1 scf7180000183793 96.47 True CONTIG scf7180000183793 2119 correct 111740 112293 3 556 CM091764.1 scf7180000183794 98.92 True CONTIG scf7180000183794 556 correct CONTIG scf7180000183795 536 unaligned CONTIG scf7180000183796 373 unaligned 8492680 8494373 1694 1 CM091766.1 scf7180000183797 100.0 True CONTIG scf7180000183797 1694 correct 3414157 3415572 1473 57 CM091756.1 scf7180000183798 99.65 True CONTIG scf7180000183798 1730 correct 321954 322847 894 1 CM091755.1 scf7180000183799 99.89 True CONTIG scf7180000183799 909 correct CONTIG scf7180000183800 378 unaligned CONTIG scf7180000183801 420 unaligned CONTIG scf7180000183802 567 unaligned 2268003 2268738 738 1 CM091768.1 scf7180000183803 99.32 True CONTIG scf7180000183803 797 correct CONTIG scf7180000183804 393 unaligned 92002 92543 1 542 CM091752.1 scf7180000183805 100.0 True CONTIG scf7180000183805 677 correct 437942 438806 865 1 CM091753.1 scf7180000183806 100.0 True CONTIG scf7180000183806 865 correct CONTIG scf7180000183807 479 unaligned 182342 182927 586 1 CM091753.1 scf7180000183808 99.83 True CONTIG scf7180000183808 830 correct 7541372 7542065 25 724 CM091757.1 scf7180000183809 98.86 True CONTIG scf7180000183809 866 correct CONTIG scf7180000183810 300 unaligned 15131630 15132803 1 1175 CM091755.1 scf7180000183811 99.74 True CONTIG scf7180000183811 1334 correct CONTIG scf7180000183812 421 unaligned CONTIG scf7180000183813 320 unaligned 9358833 9359575 743 1 CM091767.1 scf7180000183814 100.0 True CONTIG scf7180000183814 743 correct 1724087 1725502 1 1416 CM091768.1 scf7180000183815 99.79 True fake: scaffold gap size wrong estimation (local) 1725586 1727285 1494 3193 CM091768.1 scf7180000183815 99.71 True CONTIG scf7180000183815 3193 correct CONTIG scf7180000183816 331 unaligned CONTIG scf7180000183817 350 unaligned CONTIG scf7180000183818 331 unaligned CONTIG scf7180000183819 402 unaligned CONTIG scf7180000183820 786 unaligned 4417845 4418351 507 1 CM091760.1 scf7180000183821 100.0 True CONTIG scf7180000183821 531 correct CONTIG scf7180000183822 308 unaligned CONTIG scf7180000183823 523 unaligned CONTIG scf7180000183824 415 unaligned CONTIG scf7180000183825 462 unaligned CONTIG scf7180000183826 510 unaligned CONTIG scf7180000183827 336 unaligned CONTIG scf7180000183828 311 unaligned 4909040 4909606 567 1 CM091768.1 scf7180000183829 98.59 True CONTIG scf7180000183829 855 correct CONTIG scf7180000183830 441 unaligned 5852131 5854181 2066 18 CM091759.1 scf7180000183831 99.61 True CONTIG scf7180000183831 2078 correct 9389578 9390305 728 1 CM091767.1 scf7180000183832 100.0 True CONTIG scf7180000183832 728 correct CONTIG scf7180000183834 256 unaligned CONTIG scf7180000183835 418 unaligned CONTIG scf7180000183836 373 unaligned CONTIG scf7180000183837 391 unaligned CONTIG scf7180000183838 431 unaligned 2703067 2704443 1 1378 CM091758.1 scf7180000183839 99.56 True CONTIG scf7180000183839 1386 correct 9713516 9714292 100 876 CM091753.1 scf7180000183840 100.0 True CONTIG scf7180000183840 876 correct 623005 630985 1 7980 CM091763.1 scf7180000183841 99.95 True CONTIG scf7180000183841 7980 correct 8197460 8198022 46 608 CM091767.1 scf7180000183842 100.0 True CONTIG scf7180000183842 616 correct CONTIG scf7180000183843 486 unaligned 2268090 2268738 161 810 CM091768.1 scf7180000183844 99.69 True CONTIG scf7180000183844 810 correct CONTIG scf7180000183845 308 unaligned CONTIG scf7180000183846 868 unaligned CONTIG scf7180000183847 514 unaligned CONTIG scf7180000183848 401 unaligned CONTIG scf7180000183849 431 unaligned CONTIG scf7180000183850 427 unaligned 832440 833877 1439 1 CM091753.1 scf7180000183851 99.79 True CONTIG scf7180000183851 1458 correct CONTIG scf7180000183852 436 unaligned CONTIG scf7180000183853 421 unaligned CONTIG scf7180000183854 306 unaligned CONTIG scf7180000183855 936 unaligned 101092 101712 621 1 CM091764.1 scf7180000183856 100.0 True CONTIG scf7180000183856 621 correct CONTIG scf7180000183857 359 unaligned CONTIG scf7180000183858 473 unaligned 4284019 4286841 2854 31 CM091754.1 scf7180000183859 99.96 True fake: scaffold gap size wrong estimation (local) 4274907 4283867 11921 2962 CM091754.1 scf7180000183859 99.96 True CONTIG scf7180000183859 11921 correct 767565 771697 4132 1 CM091754.1 scf7180000183860 98.82 True local misassembly 764327 767393 7500 4424 CM091754.1 scf7180000183860 98.67 True translocation 13903141 13906739 7501 11103 CM091759.1 scf7180000183860 99.72 True CONTIG scf7180000183860 11103 misassembled 1362187 1363702 1516 1 CM091764.1 scf7180000183861 100.0 True CONTIG scf7180000183861 1516 correct 13099840 13100683 872 1 CM091757.1 scf7180000183862 99.06 True fake: scaffold gap size wrong estimation (local) 13088355 13098967 12155 1531 CM091757.1 scf7180000183862 99.68 True CONTIG scf7180000183862 12155 correct 2430749 2431734 1 986 CM091760.1 scf7180000183863 100.0 True CONTIG scf7180000183863 986 correct 19519807 19520734 3170 2245 CM091751.1 scf7180000183864 98.92 True fake: scaffold gap size wrong estimation (local) 19517281 19518918 5911 4275 CM091751.1 scf7180000183864 99.45 True fake: scaffold gap size wrong estimation (local) 19515633 19516502 7291 6399 CM091751.1 scf7180000183864 97.26 True CONTIG scf7180000183864 8084 correct 14227873 14230322 1 2446 CM091755.1 scf7180000183865 99.43 True CONTIG scf7180000183865 3178 correct 2575257 2578958 279 3980 CM091753.1 scf7180000183866 99.97 True indel: indel (<= 5bp) 2578959 2579705 3983 4729 CM091753.1 scf7180000183866 100.0 True indel: indel (> 5bp) 2579706 2581742 4736 6772 CM091753.1 scf7180000183866 99.26 True indel: indel (<= 5bp) 2581743 2582841 6774 7872 CM091753.1 scf7180000183866 100.0 True indel: indel (<= 5bp) 2582845 2583488 7873 8516 CM091753.1 scf7180000183866 100.0 True indel: indel (<= 5bp) 2583490 2586299 8517 11326 CM091753.1 scf7180000183866 99.36 True local misassembly 2586317 2589628 12984 16295 CM091753.1 scf7180000183866 99.91 True indel: indel (<= 5bp) 2589631 2592032 16296 18697 CM091753.1 scf7180000183866 99.92 True indel: indel (<= 5bp) 2592033 2592604 18699 19270 CM091753.1 scf7180000183866 99.3 True indel: indel (<= 5bp) 2592605 2597312 19272 23979 CM091753.1 scf7180000183866 99.96 True indel: indel (<= 5bp) 2597313 2599184 23981 25852 CM091753.1 scf7180000183866 99.52 True indel: indel (<= 5bp) 2599185 2600749 25854 27418 CM091753.1 scf7180000183866 99.62 True indel: indel (<= 5bp) 2600750 2601539 27420 28209 CM091753.1 scf7180000183866 99.87 True indel: indel (<= 5bp) 2601540 2602298 28211 28969 CM091753.1 scf7180000183866 99.74 True fake: scaffold gap size wrong estimation (local) 2605602 2633281 30122 57784 CM091753.1 scf7180000183866 99.35 True fake: scaffold gap size wrong estimation (local) 2633485 2706793 57831 131125 CM091753.1 scf7180000183866 99.49 True fake: scaffold gap size wrong estimation (local) 2707012 2717487 131296 141801 CM091753.1 scf7180000183866 99.15 True fake: scaffold gap size wrong estimation (local) 2717651 2718692 141950 142991 CM091753.1 scf7180000183866 99.71 True CONTIG scf7180000183866 142991 correct 10358933 10364820 1 6065 CM091765.1 scf7180000183867 96.24 True CONTIG scf7180000183867 6065 correct 4547808 4549894 2105 14 CM091760.1 scf7180000183868 99.28 True fake: scaffold gap size wrong estimation (local) 4468120 4547663 81274 2243 CM091760.1 scf7180000183868 98.52 True CONTIG scf7180000183868 81274 correct 165912 321743 155753 993 CM091758.1 scf7180000183869 98.77 True CONTIG scf7180000183869 155753 correct 4718224 4720505 2349 68 CM091768.1 scf7180000183870 99.87 True CONTIG scf7180000183870 2349 correct 11022099 11026080 3994 1 CM091765.1 scf7180000183871 99.77 True CONTIG scf7180000183871 4121 correct 2371746 2393339 21590 36 CM091754.1 scf7180000183872 97.81 True CONTIG scf7180000183872 21604 correct 1403765 1434434 30715 1 CM091751.1 scf7180000183873 99.44 True local misassembly 1395224 1403353 39201 31032 CM091751.1 scf7180000183873 98.95 True fake: scaffold gap size wrong estimation (local) 1271853 1395101 162141 39341 CM091751.1 scf7180000183873 98.76 True CONTIG scf7180000183873 162423 correct 11154217 11197036 43244 235 CM091756.1 scf7180000183874 98.63 True CONTIG scf7180000183874 43302 correct 5756964 5875464 117864 26 CM091764.1 scf7180000183875 98.82 True fake: scaffold gap size wrong estimation (local) 5755532 5756548 119296 118282 CM091764.1 scf7180000183875 97.9 True CONTIG scf7180000183875 119495 correct 8493888 8556938 63039 13 CM091759.1 scf7180000183876 99.48 True CONTIG scf7180000183876 63055 correct 289754 293824 4100 1 CM091761.1 scf7180000183877 99.73 True fake: scaffold gap size wrong estimation (local) 287000 289437 6715 4319 CM091761.1 scf7180000183877 98.15 True fake: scaffold gap size wrong estimation (local) 281140 286416 12427 7120 CM091761.1 scf7180000183877 99.64 True fake: scaffold gap size wrong estimation (local) 270132 280566 22998 12564 CM091761.1 scf7180000183877 99.97 True indel: indel (<= 5bp) 267073 270131 26061 23003 CM091761.1 scf7180000183877 99.25 True local misassembly 259667 261236 28404 26835 CM091761.1 scf7180000183877 100.0 True indel: indel (<= 5bp) 257514 259665 30556 28405 CM091761.1 scf7180000183877 96.47 True indel: indel (> 5bp) 256095 257496 31958 30557 CM091761.1 scf7180000183877 100.0 True indel: indel (> 5bp) 254019 255720 34005 32304 CM091761.1 scf7180000183877 99.88 True indel: indel (<= 5bp) 251293 254017 36730 34006 CM091761.1 scf7180000183877 99.96 True indel: indel (<= 5bp) 250132 251292 37892 36732 CM091761.1 scf7180000183877 100.0 True indel: indel (<= 5bp) 248328 250128 39693 37893 CM091761.1 scf7180000183877 99.67 True fake: scaffold gap size wrong estimation (local) 247306 248327 40729 39708 CM091761.1 scf7180000183877 100.0 True CONTIG scf7180000183877 40729 correct 1115981 1125075 9296 1 CM091754.1 scf7180000183878 97.06 True fake: scaffold gap size wrong estimation (local) 1114114 1115484 11186 9816 CM091754.1 scf7180000183878 99.34 True fake: scaffold gap size wrong estimation (local) 1110717 1111534 14131 13314 CM091754.1 scf7180000183878 98.66 True CONTIG scf7180000183878 14492 correct 11637679 11673672 36057 1 CM091758.1 scf7180000183879 99.55 True translocation 11379348 11380427 36058 37137 CM091751.1 scf7180000183879 99.64 True CONTIG scf7180000183879 37137 misassembled 6158262 6160162 1900 1 CM091763.1 scf7180000183880 99.37 True fake: scaffold gap size wrong estimation (local) 6144607 6158206 15603 1955 CM091763.1 scf7180000183880 98.96 True fake: scaffold gap size wrong estimation (local) 5988386 6144417 170796 15753 CM091763.1 scf7180000183880 98.98 True indel: indel (> 5bp) 5929465 5988301 229702 170890 CM091763.1 scf7180000183880 99.69 True CONTIG scf7180000183880 229702 correct 14449537 14450853 15 1331 CM091754.1 scf7180000183881 99.92 True indel: indel (<= 5bp) 14450856 14452036 1332 2512 CM091754.1 scf7180000183881 99.41 True local misassembly 14452424 14454426 2513 4515 CM091754.1 scf7180000183881 99.45 True indel: indel (> 5bp) 14454506 14455534 4574 5602 CM091754.1 scf7180000183881 99.9 True indel: indel (<= 5bp) 14455535 14456064 5604 6133 CM091754.1 scf7180000183881 98.68 True fake: scaffold gap size wrong estimation (local) 14456495 14458528 6427 8446 CM091754.1 scf7180000183881 98.48 True fake: scaffold gap size wrong estimation (local) 14458651 14459974 8561 9881 CM091754.1 scf7180000183881 99.25 True CONTIG scf7180000183881 10032 correct CONTIG scf7180000183882 155129 unaligned 5038113 5039026 914 1 CM091754.1 scf7180000183883 100.0 True CONTIG scf7180000183883 915 correct 11493387 11494085 1022 328 CM091758.1 scf7180000183884 99.4 True fake: scaffold gap size wrong estimation (local) 11385063 11492893 108667 1442 CM091758.1 scf7180000183884 99.12 True fake: not a misassembly (possible transposable element) 11009772 11010875 108668 109780 CM091756.1 scf7180000183884 97.98 True fake: not a misassembly (possible transposable element) 11376088 11385108 118820 109801 CM091758.1 scf7180000183884 99.42 True indel: indel (> 5bp) 11368236 11375990 126637 118879 CM091758.1 scf7180000183884 99.73 True local misassembly 11354229 11367873 140768 127158 CM091758.1 scf7180000183884 99.56 True CONTIG scf7180000183884 141402 correct 10452976 10464522 1 11447 CM091755.1 scf7180000183885 98.08 True fake: scaffold gap size wrong estimation (local) 10465131 10467297 11630 13796 CM091755.1 scf7180000183885 99.58 True CONTIG scf7180000183885 13796 correct 1940335 1941765 1 1441 CM091759.1 scf7180000183886 99.37 True fake: scaffold gap size wrong estimation (local) 1942565 1944012 2378 3825 CM091759.1 scf7180000183886 99.59 True CONTIG scf7180000183886 3825 correct CONTIG scf7180000183887 910 unaligned 14046106 14046795 1 691 CM091760.1 scf7180000183888 96.96 True CONTIG scf7180000183888 691 correct 226736 229505 1906 4671 CM091764.1 scf7180000183889 99.86 True fake: not a misassembly (possible transposable element) 3613103 3613630 4692 5219 CM091767.1 scf7180000183889 100.0 True fake: not a misassembly (possible transposable element) 229342 237847 5220 13705 CM091764.1 scf7180000183889 99.61 True fake: scaffold gap size wrong estimation (local) 238485 245001 14071 20514 CM091764.1 scf7180000183889 98.76 True fake: scaffold gap size wrong estimation (local) 245203 258460 20673 33940 CM091764.1 scf7180000183889 99.89 True local misassembly 259058 284759 34693 60509 CM091764.1 scf7180000183889 99.45 True fake: scaffold gap size wrong estimation (local) 286033 289774 61386 65127 CM091764.1 scf7180000183889 99.97 True fake: scaffold gap size wrong estimation (local) 289775 290928 65569 66722 CM091764.1 scf7180000183889 100.0 True fake: scaffold gap size wrong estimation (local) 291070 296951 66855 72736 CM091764.1 scf7180000183889 99.97 True fake: scaffold gap size wrong estimation (local) 297544 301836 72917 77193 CM091764.1 scf7180000183889 99.44 True fake: scaffold gap size wrong estimation (local) 302872 307934 77872 82958 CM091764.1 scf7180000183889 99.86 True fake: scaffold gap size wrong estimation (local) 308542 309454 83662 84574 CM091764.1 scf7180000183889 100.0 True CONTIG scf7180000183889 84574 correct 1315952 1319336 2 3389 CM091755.1 scf7180000183890 99.85 True fake: scaffold gap size wrong estimation (local) 1319422 1322191 3489 6258 CM091755.1 scf7180000183890 100.0 True fake: scaffold gap size wrong estimation (local) 1322304 1325064 6363 9148 CM091755.1 scf7180000183890 99.82 True fake: scaffold gap size wrong estimation (local) 1326160 1328919 9650 12410 CM091755.1 scf7180000183890 99.82 True fake: scaffold gap size wrong estimation (local) 1329706 1332809 12907 16010 CM091755.1 scf7180000183890 99.87 True CONTIG scf7180000183890 16010 correct 11668198 11746422 78154 1 CM091761.1 scf7180000183891 98.99 True fake: scaffold gap size wrong estimation (local) 11651911 11668103 94420 78232 CM091761.1 scf7180000183891 99.93 True translocation, scaffold gap is present 10660266 10661423 96612 95455 CM091760.1 scf7180000183891 96.63 True CONTIG scf7180000183891 96650 misassembled 7142715 7199001 237 56482 CM091763.1 scf7180000183892 99.46 True local misassembly 7199065 7287560 56653 145058 CM091763.1 scf7180000183892 98.51 True fake: scaffold gap size wrong estimation (local) 7287737 7361034 145192 218483 CM091763.1 scf7180000183892 99.53 True fake: scaffold gap size wrong estimation (local) 7360332 7408413 218922 267159 CM091763.1 scf7180000183892 99.21 True CONTIG scf7180000183892 267159 correct 12805551 12815562 2274 12299 CM091758.1 scf7180000183893 99.94 True fake: scaffold gap size wrong estimation (local) 12816140 12883803 12632 80047 CM091758.1 scf7180000183893 99.42 True CONTIG scf7180000183893 80074 correct 11876542 11900577 23944 1 CM091754.1 scf7180000183894 98.54 True indel: indel (> 5bp) 11822543 11876378 78135 24047 CM091754.1 scf7180000183894 99.12 True fake: scaffold gap size wrong estimation (local) 11715445 11822438 185200 78229 CM091754.1 scf7180000183894 99.38 True CONTIG scf7180000183894 185220 correct 3766779 3778032 11059 2 CM091752.1 scf7180000183895 95.82 True CONTIG scf7180000183895 11059 correct 8591514 8862191 1 271371 CM091761.1 scf7180000183896 99.22 True fake: scaffold gap size wrong estimation (local) 8862359 8864564 271404 273643 CM091761.1 scf7180000183896 98.15 True fake: scaffold gap size wrong estimation (local) 8864909 8944478 273816 353392 CM091761.1 scf7180000183896 99.4 True fake: scaffold gap size wrong estimation (local) 8944600 9108152 353491 517124 CM091761.1 scf7180000183896 98.81 True translocation 2263665 2265262 518722 517125 CM091764.1 scf7180000183896 99.88 True CONTIG scf7180000183896 518722 misassembled 303577 326401 22787 1 CM091761.1 scf7180000183897 99.66 True fake: scaffold gap size wrong estimation (local) 294256 302521 31708 23565 CM091761.1 scf7180000183897 98.25 True CONTIG scf7180000183897 31708 correct 6096254 6129142 1 33029 CM091754.1 scf7180000183898 97.76 True fake: scaffold gap size wrong estimation (local) 6129244 6163097 33117 66978 CM091754.1 scf7180000183898 99.84 True fake: scaffold gap size wrong estimation (local) 6163369 6225621 67209 129314 CM091754.1 scf7180000183898 99.56 True local misassembly 6226225 6375138 129953 278858 CM091754.1 scf7180000183898 99.44 True fake: scaffold gap size wrong estimation (local) 6375240 6406723 279497 310939 CM091754.1 scf7180000183898 99.15 True fake: scaffold gap size wrong estimation (local) 6406819 6416838 311016 321051 CM091754.1 scf7180000183898 99.45 True fake: scaffold gap size wrong estimation (local) 6416937 6609695 321720 514152 CM091754.1 scf7180000183898 99.35 True fake: scaffold gap size wrong estimation (local) 6609953 6620499 514386 524945 CM091754.1 scf7180000183898 99.52 True indel: indel (> 5bp) 6620687 6639908 525163 544251 CM091754.1 scf7180000183898 98.61 True indel: indel (<= 5bp) 6640006 6642433 544351 546778 CM091754.1 scf7180000183898 99.55 True CONTIG scf7180000183898 546778 correct 4220031 4221297 1 1292 CM091762.1 scf7180000183899 99.45 True CONTIG scf7180000183899 1292 correct 10904357 10913746 9189 1 CM091765.1 scf7180000183900 97.67 True fake: scaffold gap size wrong estimation (local) 10896025 10903584 17101 9491 CM091765.1 scf7180000183900 99.74 True CONTIG scf7180000183900 17101 correct 1424066 1432149 13 8098 CM091764.1 scf7180000183901 99.95 True fake: scaffold gap size wrong estimation (local) 1432686 1436231 8295 11840 CM091764.1 scf7180000183901 99.92 True fake: scaffold gap size wrong estimation (local) 1436359 1439573 11972 15211 CM091764.1 scf7180000183901 99.22 True CONTIG scf7180000183901 15215 correct 5737442 5909854 172535 59 CM091765.1 scf7180000183902 99.42 True indel: indel (> 5bp) 5640918 5737415 269312 172607 CM091765.1 scf7180000183902 99.16 True fake: scaffold gap size wrong estimation (local) 5612042 5640807 298309 269536 CM091765.1 scf7180000183902 99.43 True CONTIG scf7180000183902 298336 correct 530462 537655 1 7201 CM091764.1 scf7180000183903 99.75 True CONTIG scf7180000183903 7201 correct 7378710 7487953 109115 1 CM091758.1 scf7180000183904 99.36 True fake: scaffold gap size wrong estimation (local) 7314464 7378482 173235 109242 CM091758.1 scf7180000183904 99.51 True indel: indel (<= 5bp) 7241481 7314450 246238 173252 CM091758.1 scf7180000183904 99.03 True fake: scaffold gap size wrong estimation (local) 7239613 7241364 248069 246321 CM091758.1 scf7180000183904 99.0 True fake: scaffold gap size wrong estimation (local) 7236377 7239174 251298 248490 CM091758.1 scf7180000183904 98.81 True translocation 10538060 10568715 251299 281804 CM091756.1 scf7180000183904 98.76 True fake: scaffold gap size wrong estimation (local) 10568913 10570007 281942 283036 CM091756.1 scf7180000183904 99.73 True fake: scaffold gap size wrong estimation (local) 10570954 10638757 283761 351391 CM091756.1 scf7180000183904 99.22 True indel: indel (> 5bp) 10638813 10704738 351456 417453 CM091756.1 scf7180000183904 99.43 True fake: scaffold gap size wrong estimation (local) 10704940 10727174 417589 439853 CM091756.1 scf7180000183904 99.2 True fake: scaffold gap size wrong estimation (local) 10727751 10757898 440062 470174 CM091756.1 scf7180000183904 99.13 True indel: indel (<= 5bp) 10757953 10761515 470232 473813 CM091756.1 scf7180000183904 98.89 True fake: scaffold gap size wrong estimation (local) 10761762 10823984 473930 536179 CM091756.1 scf7180000183904 99.56 True local misassembly 10824048 10828592 536381 540930 CM091756.1 scf7180000183904 99.34 True fake: scaffold gap size wrong estimation (local) 10828809 10917093 541105 629212 CM091756.1 scf7180000183904 99.45 True fake: scaffold gap size wrong estimation (local) 10917209 10919655 629344 631797 CM091756.1 scf7180000183904 99.35 True indel: indel (> 5bp) 10919718 10939071 631846 650911 CM091756.1 scf7180000183904 97.92 True CONTIG scf7180000183904 650911 misassembled 2523486 2528542 5128 86 CM091766.1 scf7180000183905 99.17 True fake: scaffold gap size wrong estimation (local) 2410771 2523288 116244 5292 CM091766.1 scf7180000183905 96.96 True fake: scaffold gap size wrong estimation (local) 2370697 2409585 155637 116780 CM091766.1 scf7180000183905 99.19 True CONTIG scf7180000183905 155637 correct 5702031 5704167 2141 6 CM091759.1 scf7180000183906 99.53 True translocation 5131102 5132778 2560 4236 CM091756.1 scf7180000183906 99.7 True fake: scaffold gap size wrong estimation (local) 5133261 5133907 4741 5387 CM091756.1 scf7180000183906 99.85 True local misassembly 5134993 5136825 6476 8308 CM091756.1 scf7180000183906 99.73 True indel: indel (<= 5bp) 5137134 5140821 8616 12303 CM091756.1 scf7180000183906 99.65 True fake: scaffold gap size wrong estimation (local) 5140972 5141737 12442 13207 CM091756.1 scf7180000183906 99.74 True indel: indel (> 5bp) 5142154 5143266 13608 14720 CM091756.1 scf7180000183906 99.73 True indel: indel (> 5bp) 5143267 5143869 14729 15331 CM091756.1 scf7180000183906 99.83 True local misassembly 5150244 5152102 16494 18352 CM091756.1 scf7180000183906 99.52 True indel: indel (<= 5bp) 5152148 5153487 18400 19739 CM091756.1 scf7180000183906 100.0 True indel: indel (<= 5bp) 5153489 5155872 19740 22123 CM091756.1 scf7180000183906 99.75 True local misassembly 5156603 5158514 22645 24556 CM091756.1 scf7180000183906 99.79 True indel: indel (<= 5bp) 5158994 5160023 25038 26067 CM091756.1 scf7180000183906 100.0 True indel: indel (<= 5bp) 5160024 5162633 26069 28678 CM091756.1 scf7180000183906 99.96 True indel: indel (> 5bp) 5163021 5166230 29054 32263 CM091756.1 scf7180000183906 99.84 True indel: indel (<= 5bp) 5166468 5167164 32500 33196 CM091756.1 scf7180000183906 99.57 True indel: indel (<= 5bp) 5167305 5168078 33338 34111 CM091756.1 scf7180000183906 100.0 True indel: indel (<= 5bp) 5168080 5168879 34112 34911 CM091756.1 scf7180000183906 99.62 True local misassembly 5169075 5170030 35006 35961 CM091756.1 scf7180000183906 99.58 True indel: indel (<= 5bp) 5170031 5171098 35965 37032 CM091756.1 scf7180000183906 99.63 True indel: indel (<= 5bp) 5171099 5171772 37034 37707 CM091756.1 scf7180000183906 99.85 True indel: indel (> 5bp) 5172056 5186019 37998 51996 CM091756.1 scf7180000183906 99.51 True fake: scaffold gap size wrong estimation (local) 5186133 5196492 52087 62476 CM091756.1 scf7180000183906 99.32 True CONTIG scf7180000183906 62476 misassembled 9838825 9842124 3310 18 CM091765.1 scf7180000183907 99.31 True local misassembly 9823391 9834653 14572 3311 CM091765.1 scf7180000183907 99.96 True fake: scaffold gap size wrong estimation (local) 9799584 9823252 38332 14676 CM091765.1 scf7180000183907 99.86 True fake: scaffold gap size wrong estimation (local) 9725507 9799393 112076 38476 CM091765.1 scf7180000183907 99.07 True fake: scaffold gap size wrong estimation (local) 9593311 9724026 243241 112883 CM091765.1 scf7180000183907 99.42 True fake: scaffold gap size wrong estimation (local) 9548578 9593085 288220 243676 CM091765.1 scf7180000183907 99.84 True fake: scaffold gap size wrong estimation (local) 9503389 9548167 333922 288453 CM091765.1 scf7180000183907 98.97 True fake: scaffold gap size wrong estimation (local) 9500610 9503212 336635 334081 CM091765.1 scf7180000183907 97.73 True CONTIG scf7180000183907 336635 correct 10825907 10990179 28 163993 CM091754.1 scf7180000183908 99.36 True fake: scaffold gap size wrong estimation (local) 10990390 11033988 164190 207787 CM091754.1 scf7180000183908 99.5 True fake: scaffold gap size wrong estimation (local) 11034068 11199930 207849 373404 CM091754.1 scf7180000183908 99.37 True fake: scaffold gap size wrong estimation (local) 11200158 11208595 373571 382005 CM091754.1 scf7180000183908 99.17 True indel: indel (> 5bp) 11208628 11455528 382045 628924 CM091754.1 scf7180000183908 99.17 True indel: indel (> 5bp) 11455582 11602713 628988 776271 CM091754.1 scf7180000183908 99.32 True local misassembly 11602766 11625667 776414 799317 CM091754.1 scf7180000183908 99.11 True local misassembly 11626085 11643386 800073 817367 CM091754.1 scf7180000183908 99.43 True indel: stretch of mismatches 11643479 11671761 817460 845738 CM091754.1 scf7180000183908 99.73 True local misassembly 11671886 11675284 845767 849167 CM091754.1 scf7180000183908 99.47 True fake: not a misassembly (possible transposable element) 6172036 6173269 850448 849214 CM091759.1 scf7180000183908 99.84 True fake: not a misassembly (possible transposable element) 11675313 11687259 850502 862444 CM091754.1 scf7180000183908 99.68 True CONTIG scf7180000183908 862444 correct 2313095 2339092 25948 1 CM091767.1 scf7180000183909 98.51 True translocation 15597562 15675495 104387 25949 CM091756.1 scf7180000183909 98.96 True fake: scaffold gap size wrong estimation (local) 15535760 15596663 165554 104858 CM091756.1 scf7180000183909 99.27 True fake: not a misassembly (possible transposable element) 5249091 5249613 165555 166077 CM091768.1 scf7180000183909 100.0 True fake: not a misassembly (possible transposable element) 15401212 15536967 301698 166115 CM091756.1 scf7180000183909 99.48 True fake: scaffold gap size wrong estimation (local) 15386465 15400735 316458 302172 CM091756.1 scf7180000183909 99.26 True fake: scaffold gap size wrong estimation (local) 15333181 15386151 369545 316564 CM091756.1 scf7180000183909 99.82 True translocation, scaffold gap is present 2335894 2366703 400363 369566 CM091751.1 scf7180000183909 99.66 True fake: scaffold gap size wrong estimation (local) 2328524 2335225 407238 400492 CM091751.1 scf7180000183909 98.31 True CONTIG scf7180000183909 407238 misassembled 6483278 6484118 829 1 CM091768.1 scf7180000183910 98.34 True CONTIG scf7180000183910 829 correct 6372481 6419533 47069 24 CM091767.1 scf7180000183911 99.89 True fake: scaffold gap size wrong estimation (local) 6325745 6372295 93705 47221 CM091767.1 scf7180000183911 99.78 True fake: scaffold gap size wrong estimation (local) 6293520 6323729 124126 94267 CM091767.1 scf7180000183911 98.21 True fake: scaffold gap size wrong estimation (local) 6292109 6292726 125202 124585 CM091767.1 scf7180000183911 99.84 True fake: scaffold gap size wrong estimation (local) 6287769 6290110 128644 126323 CM091767.1 scf7180000183911 98.72 True fake: scaffold gap size wrong estimation (local) 6283878 6287561 132458 128776 CM091767.1 scf7180000183911 99.89 True translocation 11696643 11699620 135436 132459 CM091755.1 scf7180000183911 99.51 True CONTIG scf7180000183911 135452 misassembled 1702077 1703130 1134 81 CM091764.1 scf7180000183912 98.86 True CONTIG scf7180000183912 1134 correct 14432450 14433026 54 619 CM091751.1 scf7180000183913 97.77 True CONTIG scf7180000183913 619 correct CONTIG scf7180000183914 1012 unaligned 15687138 15687846 1 723 CM091757.1 scf7180000183915 100.0 True CONTIG scf7180000183915 723 correct 4231681 4232464 101 884 CM091754.1 scf7180000183916 99.87 True fake: scaffold gap size wrong estimation (local) 4232795 4235312 1504 4021 CM091754.1 scf7180000183916 100.0 True translocation 1462583 1463254 4693 4022 CM091753.1 scf7180000183916 100.0 True fake: scaffold gap size wrong estimation (local) 1459000 1462277 8637 5360 CM091753.1 scf7180000183916 99.94 True fake: scaffold gap size wrong estimation (local) 1457215 1458999 10473 8689 CM091753.1 scf7180000183916 99.94 True local misassembly 1400844 1457114 68080 11810 CM091753.1 scf7180000183916 99.94 True CONTIG scf7180000183916 68080 misassembled 320620 333262 1 12642 CM091758.1 scf7180000183917 99.33 True indel: indel (> 5bp) 333354 506978 12687 186826 CM091758.1 scf7180000183917 99.03 True fake: scaffold gap size wrong estimation (local) 507194 508061 187007 187874 CM091758.1 scf7180000183917 100.0 True fake: scaffold gap size wrong estimation (local) 508933 588583 188514 268333 CM091758.1 scf7180000183917 99.65 True fake: scaffold gap size wrong estimation (local) 588865 705020 268442 384604 CM091758.1 scf7180000183917 99.86 True indel: indel (> 5bp) 705046 807462 384652 487205 CM091758.1 scf7180000183917 99.33 True CONTIG scf7180000183917 487205 correct 9390029 9390964 937 1 CM091767.1 scf7180000183918 99.89 True CONTIG scf7180000183918 937 correct 7437686 7438979 1 1293 CM091764.1 scf7180000183919 98.61 True CONTIG scf7180000183919 1453 correct 7907041 7908220 1178 1 CM091753.1 scf7180000183920 99.07 True CONTIG scf7180000183920 1346 correct 1771969 1773075 1 1097 CM091768.1 scf7180000183921 98.92 True fake: scaffold gap size wrong estimation (local) 1773356 1776521 1287 4459 CM091768.1 scf7180000183921 98.21 True CONTIG scf7180000183921 4459 correct 1082601 1083341 964 219 CM091757.1 scf7180000183922 98.12 True CONTIG scf7180000183922 1030 correct 675187 679084 4243 348 CM091754.1 scf7180000183923 99.23 True fake: scaffold gap size wrong estimation (local) 671621 675056 7763 4329 CM091754.1 scf7180000183923 99.27 True local misassembly 663000 671093 15970 8003 CM091754.1 scf7180000183923 96.88 True fake: scaffold gap size wrong estimation (local) 661072 662344 17813 16541 CM091754.1 scf7180000183923 98.51 True indel: indel (<= 5bp) 660324 660874 18565 18015 CM091754.1 scf7180000183923 99.64 True fake: scaffold gap size wrong estimation (local) 659402 660066 19484 18820 CM091754.1 scf7180000183923 99.55 True indel: indel (<= 5bp) 656848 659401 22039 19486 CM091754.1 scf7180000183923 99.14 True indel: indel (> 5bp) 655123 656833 23750 22040 CM091754.1 scf7180000183923 99.06 True indel: indel (<= 5bp) 654109 655011 24766 23864 CM091754.1 scf7180000183923 99.67 True indel: indel (<= 5bp) 652826 653815 26045 25056 CM091754.1 scf7180000183923 98.99 True local misassembly 650181 651443 27773 26511 CM091754.1 scf7180000183923 99.52 True indel: stretch of mismatches 649105 650133 28849 27821 CM091754.1 scf7180000183923 99.61 True fake: scaffold gap size wrong estimation (local) 646356 647869 31051 29538 CM091754.1 scf7180000183923 99.27 True indel: indel (<= 5bp) 645258 646352 32146 31052 CM091754.1 scf7180000183923 97.9 True indel: indel (<= 5bp) 643328 645257 34081 32152 CM091754.1 scf7180000183923 99.53 True local misassembly 640727 642431 36692 34988 CM091754.1 scf7180000183923 99.65 True indel: indel (<= 5bp) 637734 640726 39686 36694 CM091754.1 scf7180000183923 99.26 True indel: indel (> 5bp) 637135 637733 40291 39693 CM091754.1 scf7180000183923 99.83 True local misassembly 635722 636395 40965 40292 CM091754.1 scf7180000183923 98.66 True indel: indel (<= 5bp) 635045 635720 41641 40966 CM091754.1 scf7180000183923 99.41 True indel: indel (> 5bp) 633446 634721 43265 41990 CM091754.1 scf7180000183923 99.14 True fake: scaffold gap size wrong estimation (local) 630730 632646 45729 43813 CM091754.1 scf7180000183923 99.27 True indel: indel (<= 5bp) 629758 630726 46698 45730 CM091754.1 scf7180000183923 99.28 True fake: scaffold gap size wrong estimation (local) 625328 627575 50399 48152 CM091754.1 scf7180000183923 99.69 True indel: indel (<= 5bp) 623559 625015 52163 50707 CM091754.1 scf7180000183923 98.15 True indel: indel (> 5bp) 622150 623355 53578 52373 CM091754.1 scf7180000183923 99.09 True CONTIG scf7180000183923 53609 correct 3727610 3728499 1 887 CM091760.1 scf7180000183924 97.98 True fake: scaffold gap size wrong estimation (local) 3728927 3752773 1364 25206 CM091760.1 scf7180000183924 99.31 True fake: scaffold gap size wrong estimation (local) 3752934 3758159 25338 30476 CM091760.1 scf7180000183924 97.27 True indel: indel (<= 5bp) 3758203 3777929 30522 50160 CM091760.1 scf7180000183924 98.73 True fake: scaffold gap size wrong estimation (local) 3778099 3852093 50314 124200 CM091760.1 scf7180000183924 99.15 True indel: indel (> 5bp) 3852237 3987872 124319 259584 CM091760.1 scf7180000183924 99.11 True CONTIG scf7180000183924 260010 correct 14210012 14227550 44 17588 CM091753.1 scf7180000183925 99.12 True fake: scaffold gap size wrong estimation (local) 14228437 14229894 18453 19910 CM091753.1 scf7180000183925 99.86 True fake: scaffold gap size wrong estimation (local) 14230081 14319448 20068 109382 CM091753.1 scf7180000183925 98.93 True fake: scaffold gap size wrong estimation (local) 14319883 14325150 109930 115173 CM091753.1 scf7180000183925 99.01 True indel: indel (> 5bp) 14325239 14350303 115215 140267 CM091753.1 scf7180000183925 99.01 True CONTIG scf7180000183925 140288 correct 8509697 8616523 106727 62 CM091758.1 scf7180000183926 99.27 True fake: scaffold gap size wrong estimation (local) 8462230 8509246 153893 107111 CM091758.1 scf7180000183926 98.69 True indel: indel (> 5bp) 8400158 8462230 215947 153926 CM091758.1 scf7180000183926 99.3 True fake: scaffold gap size wrong estimation (local) 8216870 8399847 395538 216123 CM091758.1 scf7180000183926 97.3 True fake: scaffold gap size wrong estimation (local) 7934158 8216535 677722 395646 CM091758.1 scf7180000183926 99.27 True fake: scaffold gap size wrong estimation (local) 7793369 7933878 818583 677823 CM091758.1 scf7180000183926 99.24 True indel: indel (<= 5bp) 7772188 7793324 839765 818623 CM091758.1 scf7180000183926 99.43 True local misassembly 7634852 7772111 977262 839957 CM091758.1 scf7180000183926 99.37 True fake: scaffold gap size wrong estimation (local) 7629854 7634418 981944 977392 CM091758.1 scf7180000183926 99.58 True fake: scaffold gap size wrong estimation (local) 7613439 7629517 997751 982032 CM091758.1 scf7180000183926 96.77 True fake: scaffold gap size wrong estimation (local) 7611262 7613333 999924 997852 CM091758.1 scf7180000183926 99.28 True indel: indel (<= 5bp) 7549523 7611174 1060604 1000007 CM091758.1 scf7180000183926 97.7 True indel: indel (> 5bp) 7497998 7549421 1112123 1060713 CM091758.1 scf7180000183926 99.67 True CONTIG scf7180000183926 1112123 correct 5281206 5299342 17795 1 CM091765.1 scf7180000183927 97.55 True fake: scaffold gap size wrong estimation (local) 5114128 5280243 184353 18363 CM091765.1 scf7180000183927 99.58 True fake: scaffold gap size wrong estimation (local) 4968641 5113253 329608 185080 CM091765.1 scf7180000183927 99.73 True fake: scaffold gap size wrong estimation (local) 4720103 4968476 577882 329749 CM091765.1 scf7180000183927 99.32 True fake: scaffold gap size wrong estimation (local) 4710079 4719618 587845 578309 CM091765.1 scf7180000183927 99.31 True fake: scaffold gap size wrong estimation (local) 4670420 4709878 627627 587996 CM091765.1 scf7180000183927 99.0 True fake: scaffold gap size wrong estimation (local) 4657133 4670256 640885 627756 CM091765.1 scf7180000183927 99.08 True indel: indel (> 5bp) 4649549 4656937 648523 641131 CM091765.1 scf7180000183927 99.68 True CONTIG scf7180000183927 648542 correct 784177 833027 38 49242 CM091756.1 scf7180000183928 98.8 True translocation, scaffold gap is present 2507598 2509336 49771 51509 CM091753.1 scf7180000183928 99.71 True fake: scaffold gap size wrong estimation (local) 2509546 2514653 51811 56923 CM091753.1 scf7180000183928 99.78 True fake: scaffold gap size wrong estimation (local) 2517806 2523896 57573 63670 CM091753.1 scf7180000183928 98.78 True fake: scaffold gap size wrong estimation (local) 2524003 2528234 63752 67977 CM091753.1 scf7180000183928 99.55 True fake: scaffold gap size wrong estimation (local) 2528373 2543925 68082 83628 CM091753.1 scf7180000183928 99.65 True local misassembly 2544127 2574965 83699 114410 CM091753.1 scf7180000183928 98.22 True translocation 3525546 3527452 114411 116317 CM091767.1 scf7180000183928 100.0 True CONTIG scf7180000183928 116317 misassembled 2926980 2975586 48572 1 CM091751.1 scf7180000183929 99.18 True fake: scaffold gap size wrong estimation (local) 2897457 2926935 78150 48624 CM091751.1 scf7180000183929 99.48 True indel: indel (> 5bp) 2895915 2897131 79686 78470 CM091751.1 scf7180000183929 99.67 True indel: indel (<= 5bp) 2895069 2895913 80531 79687 CM091751.1 scf7180000183929 99.76 True local misassembly 2892977 2894133 82453 81297 CM091751.1 scf7180000183929 99.57 True local misassembly 2890658 2891163 84759 84254 CM091751.1 scf7180000183929 99.8 True indel: indel (<= 5bp) 2889188 2890418 86226 84996 CM091751.1 scf7180000183929 99.59 True fake: scaffold gap size wrong estimation (local) 2887870 2888834 87538 86574 CM091751.1 scf7180000183929 99.48 True indel: indel (<= 5bp) 2886869 2887803 88541 87607 CM091751.1 scf7180000183929 99.36 True indel: indel (<= 5bp) 2884286 2886868 91125 88543 CM091751.1 scf7180000183929 99.46 True indel: indel (> 5bp) 2883756 2884285 91709 91180 CM091751.1 scf7180000183929 98.87 True indel: indel (> 5bp) 2882848 2883521 92582 91909 CM091751.1 scf7180000183929 99.7 True indel: indel (<= 5bp) 2882184 2882693 93242 92733 CM091751.1 scf7180000183929 98.43 True local misassembly 2880717 2881279 94714 94152 CM091751.1 scf7180000183929 99.82 True indel: indel (<= 5bp) 2879846 2880716 95586 94716 CM091751.1 scf7180000183929 99.77 True indel: stretch of mismatches 2877967 2879483 97465 95949 CM091751.1 scf7180000183929 99.8 True local misassembly 2876578 2877458 98857 97977 CM091751.1 scf7180000183929 99.66 True indel: indel (<= 5bp) 2874032 2876479 101405 98958 CM091751.1 scf7180000183929 99.71 True indel: indel (<= 5bp) 2872591 2873909 102844 101526 CM091751.1 scf7180000183929 99.77 True indel: indel (> 5bp) 2871545 2872584 103884 102845 CM091751.1 scf7180000183929 99.52 True indel: stretch of mismatches 2870721 2871432 104708 103997 CM091751.1 scf7180000183929 99.58 True indel: indel (<= 5bp) 2870209 2870720 105221 104710 CM091751.1 scf7180000183929 99.8 True indel: indel (<= 5bp) 2868616 2870208 106815 105223 CM091751.1 scf7180000183929 99.81 True indel: indel (<= 5bp) 2862180 2868221 113254 107213 CM091751.1 scf7180000183929 99.65 True indel: indel (<= 5bp) 2859547 2862179 115888 113256 CM091751.1 scf7180000183929 99.77 True indel: indel (> 5bp) 2858731 2859546 116718 115903 CM091751.1 scf7180000183929 99.39 True local misassembly 2855998 2857147 117868 116719 CM091751.1 scf7180000183929 99.65 True CONTIG scf7180000183929 117868 correct 15261548 15265953 1 4395 CM091751.1 scf7180000183930 99.21 True translocation 13998710 14002134 7820 4396 CM091757.1 scf7180000183930 99.86 True fake: not a misassembly (possible transposable element) 14802689 14804742 7821 9874 CM091758.1 scf7180000183930 98.84 True fake: not a misassembly (possible transposable element) 13970254 13996227 35797 9895 CM091757.1 scf7180000183930 99.5 True fake: scaffold gap size wrong estimation (local) 13897971 13969486 107598 36057 CM091757.1 scf7180000183930 99.78 True indel: indel (<= 5bp) 13895618 13897922 109949 107645 CM091757.1 scf7180000183930 99.83 True fake: scaffold gap size wrong estimation (local) 13883540 13894945 122384 110966 CM091757.1 scf7180000183930 99.61 True CONTIG scf7180000183930 122384 misassembled 2587338 2824028 234942 1 CM091759.1 scf7180000183931 98.96 True fake: scaffold gap size wrong estimation (local) 2542067 2587149 280119 235054 CM091759.1 scf7180000183931 99.83 True fake: scaffold gap size wrong estimation (local) 2519842 2541861 302308 280271 CM091759.1 scf7180000183931 99.81 True CONTIG scf7180000183931 302308 correct 6533426 6564556 1 31201 CM091757.1 scf7180000183932 98.85 True indel: indel (> 5bp) 6564582 6576763 31236 43429 CM091757.1 scf7180000183932 99.12 True fake: scaffold gap size wrong estimation (local) 6579154 6580807 44742 46395 CM091757.1 scf7180000183932 99.52 True fake: scaffold gap size wrong estimation (local) 6583073 6583692 48613 49232 CM091757.1 scf7180000183932 99.84 True fake: not a misassembly (possible transposable element) 15657942 15659301 51070 49711 CM091755.1 scf7180000183932 100.0 True fake: not a misassembly (possible transposable element) 6584645 6588062 51071 54494 CM091757.1 scf7180000183932 99.33 True fake: scaffold gap size wrong estimation (local) 6587808 6589687 54876 56764 CM091757.1 scf7180000183932 98.57 True fake: scaffold gap size wrong estimation (local) 6589851 6604705 56894 71579 CM091757.1 scf7180000183932 98.14 True fake: scaffold gap size wrong estimation (local) 6604919 6615837 71727 82665 CM091757.1 scf7180000183932 99.47 True fake: scaffold gap size wrong estimation (local) 6615952 6630524 82735 97348 CM091757.1 scf7180000183932 98.94 True fake: scaffold gap size wrong estimation (local) 6631409 6632546 97442 98581 CM091757.1 scf7180000183932 99.56 True local misassembly 6630600 6641266 98642 109358 CM091757.1 scf7180000183932 98.93 True fake: scaffold gap size wrong estimation (local) 6641538 6651010 109464 118935 CM091757.1 scf7180000183932 99.07 True indel: indel (> 5bp) 6651032 6671586 118967 139205 CM091757.1 scf7180000183932 96.93 True fake: scaffold gap size wrong estimation (local) 6671659 6675847 139259 143446 CM091757.1 scf7180000183932 99.48 True fake: not a misassembly (possible transposable element) 7554142 7554694 143503 144055 CM091767.1 scf7180000183932 99.84 True fake: not a misassembly (possible transposable element) 6675919 6677615 144056 145757 CM091757.1 scf7180000183932 99.59 True fake: scaffold gap size wrong estimation (local) 6678013 6688414 146104 156543 CM091757.1 scf7180000183932 98.57 True fake: scaffold gap size wrong estimation (local) 6688681 6798892 156667 266695 CM091757.1 scf7180000183932 99.11 True indel: indel (> 5bp) 6798950 6864802 266765 331621 CM091757.1 scf7180000183932 97.49 True CONTIG scf7180000183932 331627 correct 2567240 2598323 1 30976 CM091751.1 scf7180000183933 98.44 True fake: scaffold gap size wrong estimation (local) 2598411 2609830 31069 42082 CM091751.1 scf7180000183933 95.67 True fake: not a misassembly (possible transposable element) 8399221 8401010 43874 42083 CM091759.1 scf7180000183933 99.18 True fake: not a misassembly (possible transposable element) 2609818 2651857 43895 84986 CM091751.1 scf7180000183933 96.46 True local misassembly 2652744 2653677 85375 86308 CM091751.1 scf7180000183933 99.46 True fake: scaffold gap size wrong estimation (local) 2655581 2656160 88242 88821 CM091751.1 scf7180000183933 99.83 True fake: scaffold gap size wrong estimation (local) 2657191 2657894 89872 90575 CM091751.1 scf7180000183933 99.72 True indel: indel (<= 5bp) 2658106 2658940 90789 91623 CM091751.1 scf7180000183933 100.0 True local misassembly 2659080 2659989 91624 92533 CM091751.1 scf7180000183933 99.56 True indel: indel (<= 5bp) 2660026 2662996 92571 95541 CM091751.1 scf7180000183933 99.6 True local misassembly 2664349 2665521 96623 97795 CM091751.1 scf7180000183933 99.32 True indel: indel (<= 5bp) 2665522 2666180 97797 98455 CM091751.1 scf7180000183933 99.7 True indel: indel (<= 5bp) 2666182 2667184 98456 99458 CM091751.1 scf7180000183933 99.6 True local misassembly 2667719 2668493 99995 100769 CM091751.1 scf7180000183933 99.87 True indel: indel (<= 5bp) 2668495 2669255 100770 101530 CM091751.1 scf7180000183933 98.69 True indel: indel (> 5bp) 2669720 2670547 102004 102831 CM091751.1 scf7180000183933 99.15 True indel: indel (> 5bp) 2670566 2705225 102887 136784 CM091751.1 scf7180000183933 96.54 True fake: scaffold gap size wrong estimation (local) 2705451 2725442 136910 156685 CM091751.1 scf7180000183933 97.84 True indel: indel (> 5bp) 2725894 2735768 157152 167018 CM091751.1 scf7180000183933 98.75 True indel: indel (> 5bp) 2735816 2755393 167100 186726 CM091751.1 scf7180000183933 98.9 True fake: scaffold gap size wrong estimation (local) 2755535 2770432 186881 201679 CM091751.1 scf7180000183933 97.78 True fake: scaffold gap size wrong estimation (local) 2772708 2830331 202138 257611 CM091751.1 scf7180000183933 95.49 True CONTIG scf7180000183933 259893 correct 3772819 3842742 69409 1 CM091765.1 scf7180000183934 98.38 True fake: scaffold gap size wrong estimation (local) 3764352 3772580 77780 69581 CM091765.1 scf7180000183934 98.36 True fake: scaffold gap size wrong estimation (local) 3746663 3764056 95541 78171 CM091765.1 scf7180000183934 99.08 True fake: not a misassembly (possible transposable element) 11763945 11765740 97358 95562 CM091757.1 scf7180000183934 99.51 True fake: not a misassembly (possible transposable element) 3743327 3745359 99397 97359 CM091765.1 scf7180000183934 99.17 True local misassembly 3745249 3746502 100647 99426 CM091765.1 scf7180000183934 96.89 True fake: scaffold gap size wrong estimation (local) 3741954 3743674 102537 100817 CM091765.1 scf7180000183934 99.65 True indel: indel (> 5bp) 3740610 3741666 103871 102815 CM091765.1 scf7180000183934 99.62 True local misassembly 3739597 3740251 104526 103872 CM091765.1 scf7180000183934 99.85 True indel: indel (<= 5bp) 3738052 3739341 106073 104784 CM091765.1 scf7180000183934 99.92 True indel: indel (<= 5bp) 3736937 3738050 107187 106074 CM091765.1 scf7180000183934 100.0 True indel: indel (> 5bp) 3480854 3736889 363709 107306 CM091765.1 scf7180000183934 99.44 True CONTIG scf7180000183934 363720 correct 935145 936418 1273 1 CM091760.1 scf7180000183935 99.77 True translocation 11745647 11763026 1274 18409 CM091761.1 scf7180000183935 98.39 True fake: scaffold gap size wrong estimation (local) 11763862 11795893 18813 50829 CM091761.1 scf7180000183935 99.54 True fake: scaffold gap size wrong estimation (local) 11796041 11967233 50968 222687 CM091761.1 scf7180000183935 99.33 True fake: scaffold gap size wrong estimation (local) 11967398 12312969 222825 568240 CM091761.1 scf7180000183935 99.36 True CONTIG scf7180000183935 568304 misassembled 5121483 5130825 9365 1 CM091756.1 scf7180000183936 99.13 True indel: indel (> 5bp) 4992825 5121369 137477 9485 CM091756.1 scf7180000183936 98.91 True fake: scaffold gap size wrong estimation (local) 4741633 4992365 387281 137664 CM091756.1 scf7180000183936 98.9 True indel: indel (> 5bp) 4563757 4741571 565060 387355 CM091756.1 scf7180000183936 99.0 True indel: indel (> 5bp) 4553558 4563567 574779 565204 CM091756.1 scf7180000183936 95.1 True fake: scaffold gap size wrong estimation (local) 4491236 4553423 637488 575260 CM091756.1 scf7180000183936 97.88 True indel: indel (> 5bp) 4466104 4491071 662877 637643 CM091756.1 scf7180000183936 98.2 True CONTIG scf7180000183936 662877 correct 16559591 16563937 161 4537 CM091753.1 scf7180000183937 99.25 True indel: indel (<= 5bp) 16563956 16566448 4557 7073 CM091753.1 scf7180000183937 98.91 True CONTIG scf7180000183937 7073 correct 17555483 17557352 1870 1 CM091751.1 scf7180000183938 99.68 True fake: scaffold gap size wrong estimation (local) 17553458 17555482 4027 2003 CM091751.1 scf7180000183938 97.04 True local misassembly 17551801 17553004 5231 4028 CM091751.1 scf7180000183938 99.92 True fake: scaffold gap size wrong estimation (local) 17550238 17551618 6682 5302 CM091751.1 scf7180000183938 100.0 True indel: indel (<= 5bp) 17549418 17550233 7498 6683 CM091751.1 scf7180000183938 100.0 True fake: scaffold gap size wrong estimation (local) 17547989 17549417 8999 7571 CM091751.1 scf7180000183938 100.0 True indel: indel (> 5bp) 17546346 17547978 10632 9000 CM091751.1 scf7180000183938 100.0 True indel: indel (<= 5bp) 17543373 17546345 13606 10634 CM091751.1 scf7180000183938 99.97 True CONTIG scf7180000183938 13904 correct 13051746 13058819 239 7308 CM091751.1 scf7180000183939 99.12 True fake: scaffold gap size wrong estimation (local) 13058877 13073485 7390 22035 CM091751.1 scf7180000183939 99.16 True fake: scaffold gap size wrong estimation (local) 13074214 13075952 22751 24522 CM091751.1 scf7180000183939 98.29 True CONTIG scf7180000183939 24532 correct 11044913 11047676 2718 1 CM091765.1 scf7180000183940 97.86 True fake: scaffold gap size wrong estimation (local) 11042620 11044184 5320 3666 CM091765.1 scf7180000183940 95.72 True fake: scaffold gap size wrong estimation (local) 11037844 11040958 9092 5978 CM091765.1 scf7180000183940 99.97 True indel: indel (<= 5bp) 11036986 11037669 9951 9268 CM091765.1 scf7180000183940 100.0 True CONTIG scf7180000183940 10031 correct 761947 764281 2345 4 CM091754.1 scf7180000183941 99.02 True fake: scaffold gap size wrong estimation (local) 725533 761355 37327 2643 CM091754.1 scf7180000183941 95.36 True fake: scaffold gap size wrong estimation (local) 723258 724707 39574 38125 CM091754.1 scf7180000183941 97.93 True fake: scaffold gap size wrong estimation (local) 720848 722331 41755 40272 CM091754.1 scf7180000183941 99.46 True indel: indel (> 5bp) 719693 720448 42943 42188 CM091754.1 scf7180000183941 99.34 True fake: scaffold gap size wrong estimation (local) 716530 718655 45835 43710 CM091754.1 scf7180000183941 99.29 True local misassembly 714069 714582 46846 46333 CM091754.1 scf7180000183941 97.86 True fake: scaffold gap size wrong estimation (local) 712272 713360 48551 47463 CM091754.1 scf7180000183941 100.0 True fake: scaffold gap size wrong estimation (local) 710168 712108 50630 48690 CM091754.1 scf7180000183941 99.33 True fake: scaffold gap size wrong estimation (local) 709539 710065 51259 50733 CM091754.1 scf7180000183941 99.05 True local misassembly 708447 708982 51795 51260 CM091754.1 scf7180000183941 99.25 True indel: indel (> 5bp) 707108 707941 53078 52245 CM091754.1 scf7180000183941 99.88 True indel: indel (<= 5bp) 706443 707107 53744 53080 CM091754.1 scf7180000183941 99.85 True fake: scaffold gap size wrong estimation (local) 704604 705310 55247 54541 CM091754.1 scf7180000183941 99.43 True fake: scaffold gap size wrong estimation (local) 703906 704540 55988 55354 CM091754.1 scf7180000183941 97.8 True local misassembly 702406 703225 57491 56672 CM091754.1 scf7180000183941 100.0 True indel: indel (<= 5bp) 701084 701905 58811 57990 CM091754.1 scf7180000183941 99.03 True indel: indel (<= 5bp) 700029 701078 59861 58812 CM091754.1 scf7180000183941 99.14 True indel: indel (<= 5bp) 699348 700028 60543 59863 CM091754.1 scf7180000183941 99.41 True local misassembly 697373 698546 62506 61333 CM091754.1 scf7180000183941 98.98 True local misassembly 695686 696477 63507 62716 CM091754.1 scf7180000183941 98.74 True indel: indel (<= 5bp) 695089 695684 64103 63508 CM091754.1 scf7180000183941 99.66 True local misassembly 693081 693833 66106 65354 CM091754.1 scf7180000183941 99.87 True fake: scaffold gap size wrong estimation (local) 679561 692238 79425 66709 CM091754.1 scf7180000183941 98.95 True translocation 4990876 4996052 85213 79887 CM091768.1 scf7180000183941 99.88 True CONTIG scf7180000183941 85220 misassembled 2501338 2505789 4455 1 CM091753.1 scf7180000183942 99.51 True fake: scaffold gap size wrong estimation (local) 2461268 2500830 44044 4701 CM091753.1 scf7180000183942 98.69 True fake: scaffold gap size wrong estimation (local) 2293335 2459656 210220 44847 CM091753.1 scf7180000183942 99.05 True CONTIG scf7180000183942 210220 correct 15675540 15886693 1 211302 CM091756.1 scf7180000183943 99.75 True fake: scaffold gap size wrong estimation (local) 15886912 15912550 211471 236806 CM091756.1 scf7180000183943 98.6 True indel: indel (> 5bp) 15912614 15937243 236807 261499 CM091756.1 scf7180000183943 99.68 True fake: scaffold gap size wrong estimation (local) 15937654 16131951 261856 456733 CM091756.1 scf7180000183943 99.06 True fake: scaffold gap size wrong estimation (local) 16132199 16133219 456914 457934 CM091756.1 scf7180000183943 99.9 True fake: scaffold gap size wrong estimation (local) 16133588 16177290 458037 502558 CM091756.1 scf7180000183943 98.0 True indel: indel (> 5bp) 16177346 16309029 502644 633989 CM091756.1 scf7180000183943 99.49 True relocation, scaffold gap is present, inconsistency = 10283 16321516 16335174 636193 649831 CM091756.1 scf7180000183943 99.76 True fake: scaffold gap size wrong estimation (local) 16336214 16348310 650086 662140 CM091756.1 scf7180000183943 99.06 True CONTIG scf7180000183943 662140 misassembled 350537 786268 434929 1 CM091756.1 scf7180000183944 99.14 True indel: indel (> 5bp) 297348 350512 488094 434976 CM091756.1 scf7180000183944 99.38 True fake: scaffold gap size wrong estimation (local) 291828 296855 493295 488289 CM091756.1 scf7180000183944 99.28 True fake: scaffold gap size wrong estimation (local) 223013 291210 561563 493418 CM091756.1 scf7180000183944 99.36 True local misassembly 135528 222578 648959 561754 CM091756.1 scf7180000183944 99.09 True indel: indel (> 5bp) 131661 135425 652814 649055 CM091756.1 scf7180000183944 99.07 True fake: scaffold gap size wrong estimation (local) 19349 131044 764708 652918 CM091756.1 scf7180000183944 99.51 True CONTIG scf7180000183944 766409 correct 6416973 6419056 2084 1 CM091753.1 scf7180000183945 99.86 True translocation 9335751 9521925 187967 2085 CM091762.1 scf7180000183945 98.95 True fake: scaffold gap size wrong estimation (local) 9318539 9335543 205836 188194 CM091762.1 scf7180000183945 96.02 True indel: indel (> 5bp) 9226322 9318421 297992 205999 CM091762.1 scf7180000183945 99.29 True indel: indel (<= 5bp) 9196412 9226321 327903 297994 CM091762.1 scf7180000183945 99.34 True CONTIG scf7180000183945 327903 misassembled 2724435 2726765 11 2343 CM091753.1 scf7180000183946 99.4 True fake: scaffold gap size wrong estimation (local) 2731305 2781970 2821 53499 CM091753.1 scf7180000183946 99.6 True fake: scaffold gap size wrong estimation (local) 2782718 2815104 53872 86260 CM091753.1 scf7180000183946 99.45 True fake: scaffold gap size wrong estimation (local) 2815247 2899893 86396 171482 CM091753.1 scf7180000183946 99.38 True fake: scaffold gap size wrong estimation (local) 2900053 2915971 171574 187490 CM091753.1 scf7180000183946 99.75 True fake: scaffold gap size wrong estimation (local) 2916167 2958296 187639 229505 CM091753.1 scf7180000183946 98.83 True indel: indel (> 5bp) 2958356 3116158 229571 387749 CM091753.1 scf7180000183946 98.77 True indel: indel (> 5bp) 3116230 3208336 387804 479767 CM091753.1 scf7180000183946 99.21 True fake: scaffold gap size wrong estimation (local) 3208743 3309166 479946 576664 CM091753.1 scf7180000183946 95.77 True fake: scaffold gap size wrong estimation (local) 3310771 3312660 577238 579127 CM091753.1 scf7180000183946 98.52 True fake: scaffold gap size wrong estimation (local) 3312952 3316681 579653 583391 CM091753.1 scf7180000183946 99.57 True indel: indel (> 5bp) 3317076 3317610 583769 584303 CM091753.1 scf7180000183946 99.63 True CONTIG scf7180000183946 584909 correct 887315 908118 20624 18 CM091755.1 scf7180000183947 98.99 True fake: scaffold gap size wrong estimation (local) 804416 887180 103355 20712 CM091755.1 scf7180000183947 99.69 True fake: scaffold gap size wrong estimation (local) 798031 798938 108149 107242 CM091755.1 scf7180000183947 100.0 True CONTIG scf7180000183947 108259 correct 29247 58353 652 29580 CM091766.1 scf7180000183948 99.32 True fake: scaffold gap size wrong estimation (local) 58462 137894 29711 108996 CM091766.1 scf7180000183948 99.6 True fake: scaffold gap size wrong estimation (local) 138376 367625 109238 339197 CM091766.1 scf7180000183948 99.45 True translocation 2702032 2704581 339198 341747 CM091762.1 scf7180000183948 99.96 True CONTIG scf7180000183948 341747 misassembled 213068 213743 143 818 CM091753.1 scf7180000183949 100.0 True indel: indel (> 5bp) 213791 214290 839 1338 CM091753.1 scf7180000183949 100.0 True fake: scaffold gap size wrong estimation (local) 215557 216152 2549 3144 CM091753.1 scf7180000183949 100.0 True indel: indel (> 5bp) 216163 216787 3145 3769 CM091753.1 scf7180000183949 96.16 True fake: scaffold gap size wrong estimation (local) 216788 217367 3975 4554 CM091753.1 scf7180000183949 99.48 True indel: indel (<= 5bp) 217465 218448 4649 5632 CM091753.1 scf7180000183949 97.97 True fake: scaffold gap size wrong estimation (local) 220005 221303 6646 7944 CM091753.1 scf7180000183949 100.0 True CONTIG scf7180000183949 7944 correct 4084575 4113626 28875 2 CM091755.1 scf7180000183950 98.6 True fake: scaffold gap size wrong estimation (local) 4030941 4084329 82338 29055 CM091755.1 scf7180000183950 99.18 True fake: scaffold gap size wrong estimation (local) 3896014 4030786 216968 82437 CM091755.1 scf7180000183950 99.21 True fake: scaffold gap size wrong estimation (local) 3894934 3896322 218592 217204 CM091755.1 scf7180000183950 99.87 True translocation 12043365 12091815 218593 266907 CM091757.1 scf7180000183950 98.85 True indel: indel (> 5bp) 12091846 12174105 266956 349179 CM091757.1 scf7180000183950 99.57 True fake: scaffold gap size wrong estimation (local) 12174244 12222387 349348 397488 CM091757.1 scf7180000183950 99.47 True fake: scaffold gap size wrong estimation (local) 12222491 12296253 397583 472088 CM091757.1 scf7180000183950 98.56 True CONTIG scf7180000183950 472088 misassembled 10725272 10727562 20 2310 CM091765.1 scf7180000183951 100.0 True fake: scaffold gap size wrong estimation (local) 10728182 10751248 2523 25644 CM091765.1 scf7180000183951 98.94 True fake: scaffold gap size wrong estimation (local) 10752415 10755996 26287 29868 CM091765.1 scf7180000183951 99.8 True fake: scaffold gap size wrong estimation (local) 10758971 10759607 30737 31373 CM091765.1 scf7180000183951 99.84 True fake: scaffold gap size wrong estimation (local) 10759907 10764828 31922 36842 CM091765.1 scf7180000183951 99.92 True fake: scaffold gap size wrong estimation (local) 10765212 10766309 37330 38427 CM091765.1 scf7180000183951 99.73 True CONTIG scf7180000183951 38427 correct 4670396 4688506 18119 28 CM091766.1 scf7180000183952 99.21 True indel: indel (> 5bp) 4669459 4670345 19097 18182 CM091766.1 scf7180000183952 96.67 True fake: scaffold gap size wrong estimation (local) 4647938 4657004 45527 36476 CM091766.1 scf7180000183952 99.5 True fake: scaffold gap size wrong estimation (local) 4641417 4647722 51960 45669 CM091766.1 scf7180000183952 99.03 True fake: scaffold gap size wrong estimation (local) 4564735 4641320 128400 52041 CM091766.1 scf7180000183952 98.99 True fake: scaffold gap size wrong estimation (local) 4544349 4564571 148800 128546 CM091766.1 scf7180000183952 99.13 True fake: scaffold gap size wrong estimation (local) 4503630 4544118 189541 148994 CM091766.1 scf7180000183952 99.12 True indel: stretch of mismatches 4479272 4503347 213748 189824 CM091766.1 scf7180000183952 98.59 True local misassembly 4476767 4478903 215951 213785 CM091766.1 scf7180000183952 98.79 True indel: indel (<= 5bp) 4452393 4476738 239834 215982 CM091766.1 scf7180000183952 97.18 True fake: scaffold gap size wrong estimation (local) 4354435 4452274 337946 240071 CM091766.1 scf7180000183952 99.46 True fake: scaffold gap size wrong estimation (local) 4322927 4353883 369858 338127 CM091766.1 scf7180000183952 96.02 True fake: scaffold gap size wrong estimation (local) 4277391 4322761 415365 370005 CM091766.1 scf7180000183952 99.25 True local misassembly 4047947 4277310 645040 415584 CM091766.1 scf7180000183952 99.38 True indel: indel (> 5bp) 3911817 4047548 780742 645432 CM091766.1 scf7180000183952 99.18 True CONTIG scf7180000183952 780742 correct 9546531 9574680 28233 60 CM091764.1 scf7180000183953 99.43 True indel: indel (> 5bp) 9526441 9546168 48298 28606 CM091764.1 scf7180000183953 99.05 True fake: scaffold gap size wrong estimation (local) 9311952 9526321 262746 48385 CM091764.1 scf7180000183953 99.45 True fake: scaffold gap size wrong estimation (local) 9224918 9311755 349795 262915 CM091764.1 scf7180000183953 99.56 True local misassembly 9146907 9224808 430999 353322 CM091764.1 scf7180000183953 99.09 True fake: scaffold gap size wrong estimation (local) 9136334 9146706 441580 431173 CM091764.1 scf7180000183953 98.78 True fake: scaffold gap size wrong estimation (local) 9131324 9134982 446294 442639 CM091764.1 scf7180000183953 99.48 True fake: scaffold gap size wrong estimation (local) 8963258 9131218 614909 446406 CM091764.1 scf7180000183953 99.04 True indel: indel (> 5bp) 8951728 8963234 626463 614957 CM091764.1 scf7180000183953 99.18 True fake: scaffold gap size wrong estimation (local) 8929091 8951564 649067 626583 CM091764.1 scf7180000183953 99.55 True fake: scaffold gap size wrong estimation (local) 8753953 8928862 825033 649695 CM091764.1 scf7180000183953 99.54 True CONTIG scf7180000183953 825033 correct 3206882 3229278 22204 1 CM091761.1 scf7180000183954 98.7 True fake: scaffold gap size wrong estimation (local) 3173313 3205742 55162 22743 CM091761.1 scf7180000183954 99.53 True CONTIG scf7180000183954 55488 correct 915996 1043678 127588 1 CM091765.1 scf7180000183955 99.26 True fake: scaffold gap size wrong estimation (local) 651581 915732 391775 127671 CM091765.1 scf7180000183955 99.17 True indel: indel (> 5bp) 645559 651526 397786 391813 CM091765.1 scf7180000183955 99.75 True fake: scaffold gap size wrong estimation (local) 638384 645415 404991 397897 CM091765.1 scf7180000183955 98.88 True fake: scaffold gap size wrong estimation (local) 635644 637091 407602 406157 CM091765.1 scf7180000183955 99.45 True fake: scaffold gap size wrong estimation (local) 514008 635549 529325 407692 CM091765.1 scf7180000183955 99.67 True fake: scaffold gap size wrong estimation (local) 367898 513917 675236 529424 CM091765.1 scf7180000183955 99.29 True local misassembly 369077 370136 676341 675282 CM091765.1 scf7180000183955 99.62 True fake: scaffold gap size wrong estimation (local) 292850 368947 752701 676751 CM091765.1 scf7180000183955 99.17 True fake: scaffold gap size wrong estimation (local) 289422 291475 755817 753804 CM091765.1 scf7180000183955 97.52 True CONTIG scf7180000183955 755817 correct 6130791 6153496 299 22499 CM091760.1 scf7180000183956 97.05 True fake: scaffold gap size wrong estimation (local) 6155200 6155987 23245 24032 CM091760.1 scf7180000183956 99.37 True local misassembly 6156168 6158186 24033 26051 CM091760.1 scf7180000183956 99.65 True fake: scaffold gap size wrong estimation (local) 6158279 6159115 26159 26995 CM091760.1 scf7180000183956 99.4 True fake: scaffold gap size wrong estimation (local) 6160030 6209257 27369 76647 CM091760.1 scf7180000183956 99.23 True local misassembly 6215261 6215798 79214 79751 CM091760.1 scf7180000183956 99.81 True indel: indel (<= 5bp) 6215800 6216465 79752 80417 CM091760.1 scf7180000183956 99.4 True indel: indel (<= 5bp) 6216467 6217621 80418 81572 CM091760.1 scf7180000183956 99.48 True indel: indel (> 5bp) 6218043 6218947 81985 82889 CM091760.1 scf7180000183956 97.13 True indel: indel (<= 5bp) 6218948 6220277 82892 84221 CM091760.1 scf7180000183956 99.25 True indel: indel (<= 5bp) 6220279 6222538 84222 86481 CM091760.1 scf7180000183956 99.47 True fake: scaffold gap size wrong estimation (local) 6224221 6224745 87675 88199 CM091760.1 scf7180000183956 99.81 True local misassembly 6222575 6249187 88513 115082 CM091760.1 scf7180000183956 98.94 True fake: scaffold gap size wrong estimation (local) 6249287 6256286 115585 122619 CM091760.1 scf7180000183956 99.1 True fake: scaffold gap size wrong estimation (local) 6256494 6285876 122777 152184 CM091760.1 scf7180000183956 99.31 True fake: scaffold gap size wrong estimation (local) 6286108 6361050 152325 227017 CM091760.1 scf7180000183956 99.05 True fake: scaffold gap size wrong estimation (local) 6361303 6362848 227245 228812 CM091760.1 scf7180000183956 99.74 True CONTIG scf7180000183956 228812 correct 4252879 4336496 83907 1 CM091760.1 scf7180000183957 98.86 True fake: scaffold gap size wrong estimation (local) 4235528 4252743 101236 84013 CM091760.1 scf7180000183957 99.26 True fake: scaffold gap size wrong estimation (local) 4184169 4234151 151939 101968 CM091760.1 scf7180000183957 99.28 True fake: scaffold gap size wrong estimation (local) 4113130 4183979 221992 152102 CM091760.1 scf7180000183957 98.06 True indel: indel (> 5bp) 4100641 4113047 234453 222053 CM091760.1 scf7180000183957 99.22 True fake: scaffold gap size wrong estimation (local) 4034386 4100384 300441 234557 CM091760.1 scf7180000183957 99.01 True indel: indel (> 5bp) 3986102 4034353 348774 300488 CM091760.1 scf7180000183957 99.52 True CONTIG scf7180000183957 348774 correct 10342226 10344118 392 2285 CM091765.1 scf7180000183958 99.95 True fake: scaffold gap size wrong estimation (local) 10344959 10347062 2972 5081 CM091765.1 scf7180000183958 99.67 True fake: scaffold gap size wrong estimation (local) 10347682 10354698 5162 12210 CM091765.1 scf7180000183958 95.47 True CONTIG scf7180000183958 12210 correct 4586166 4644743 57813 16 CM091765.1 scf7180000183959 98.23 True indel: indel (> 5bp) 4583016 4586092 60942 57865 CM091765.1 scf7180000183959 99.45 True fake: scaffold gap size wrong estimation (local) 4559561 4582563 84603 61598 CM091765.1 scf7180000183959 99.38 True fake: scaffold gap size wrong estimation (local) 4552160 4559033 91574 84705 CM091765.1 scf7180000183959 99.48 True fake: scaffold gap size wrong estimation (local) 4544153 4551730 99345 91793 CM091765.1 scf7180000183959 98.89 True fake: scaffold gap size wrong estimation (local) 4451512 4543489 191638 99723 CM091765.1 scf7180000183959 98.48 True indel: indel (> 5bp) 4374735 4451319 268368 191838 CM091765.1 scf7180000183959 99.01 True indel: indel (> 5bp) 4028651 4374687 614348 268428 CM091765.1 scf7180000183959 99.18 True indel: indel (> 5bp) 4020363 4028535 622633 614456 CM091765.1 scf7180000183959 99.16 True fake: scaffold gap size wrong estimation (local) 3953823 4019962 688620 622785 CM091765.1 scf7180000183959 98.94 True local misassembly 3947263 3953174 694750 688807 CM091765.1 scf7180000183959 99.27 True local misassembly 3893281 3946954 748608 694879 CM091765.1 scf7180000183959 98.62 True fake: scaffold gap size wrong estimation (local) 3830161 3892753 811273 748823 CM091765.1 scf7180000183959 98.8 True CONTIG scf7180000183959 811273 correct 13399537 13400108 693 122 CM091759.1 scf7180000183960 97.55 True fake: scaffold gap size wrong estimation (local) 13374423 13398990 25838 1631 CM091759.1 scf7180000183960 98.14 True fake: scaffold gap size wrong estimation (local) 13330571 13374295 69409 25955 CM091759.1 scf7180000183960 97.93 True indel: indel (> 5bp) 13329504 13330414 70510 69603 CM091759.1 scf7180000183960 97.88 True indel: indel (> 5bp) 13328262 13329463 71723 70538 CM091759.1 scf7180000183960 97.84 True fake: scaffold gap size wrong estimation (local) 13310184 13327936 89576 71805 CM091759.1 scf7180000183960 99.2 True fake: scaffold gap size wrong estimation (local) 13272142 13309996 127439 89804 CM091759.1 scf7180000183960 98.57 True fake: scaffold gap size wrong estimation (local) 13271046 13271655 129073 128464 CM091759.1 scf7180000183960 99.51 True indel: indel (<= 5bp) 13269097 13270675 131017 129439 CM091759.1 scf7180000183960 99.62 True indel: indel (<= 5bp) 13268393 13269095 131720 131018 CM091759.1 scf7180000183960 99.57 True indel: indel (<= 5bp) 13267008 13268392 133106 131722 CM091759.1 scf7180000183960 99.57 True indel: indel (> 5bp) 13264968 13266582 135153 133539 CM091759.1 scf7180000183960 96.84 True local misassembly 13261201 13264350 138914 135765 CM091759.1 scf7180000183960 99.52 True indel: indel (<= 5bp) 13259808 13260930 140309 139187 CM091759.1 scf7180000183960 99.55 True indel: indel (<= 5bp) 13258692 13259807 141429 140314 CM091759.1 scf7180000183960 99.73 True local misassembly 13256917 13257686 143203 142434 CM091759.1 scf7180000183960 100.0 True indel: indel (<= 5bp) 13255655 13256550 144463 143568 CM091759.1 scf7180000183960 99.67 True local misassembly 13252313 13254567 147790 145536 CM091759.1 scf7180000183960 99.47 True indel: stretch of mismatches 13250507 13252277 149596 147826 CM091759.1 scf7180000183960 99.38 True indel: stretch of mismatches 13248294 13250028 151809 150075 CM091759.1 scf7180000183960 99.6 True indel: indel (<= 5bp) 13246977 13248108 153128 151997 CM091759.1 scf7180000183960 99.2 True indel: stretch of mismatches 13245736 13246894 154369 153211 CM091759.1 scf7180000183960 99.65 True fake: scaffold gap size wrong estimation (local) 13241453 13242690 155762 154525 CM091759.1 scf7180000183960 99.6 True indel: indel (<= 5bp) 13240404 13241452 156812 155764 CM091759.1 scf7180000183960 99.52 True fake: scaffold gap size wrong estimation (local) 13238410 13240270 158828 156968 CM091759.1 scf7180000183960 99.41 True indel: indel (> 5bp) 13237199 13238409 160046 158836 CM091759.1 scf7180000183960 99.34 True local misassembly 13235814 13236347 161431 160898 CM091759.1 scf7180000183960 99.63 True indel: indel (<= 5bp) 13234206 13235813 163041 161434 CM091759.1 scf7180000183960 99.63 True indel: indel (<= 5bp) 13233331 13234095 163919 163155 CM091759.1 scf7180000183960 99.61 True indel: stretch of mismatches 13232090 13232863 165160 164387 CM091759.1 scf7180000183960 99.1 True indel: indel (<= 5bp) 13231442 13232089 165809 165162 CM091759.1 scf7180000183960 99.69 True indel: indel (<= 5bp) 13230699 13231440 166551 165810 CM091759.1 scf7180000183960 100.0 True indel: indel (<= 5bp) 13229857 13230597 167392 166652 CM091759.1 scf7180000183960 99.46 True indel: indel (<= 5bp) 13229235 13229856 168015 167394 CM091759.1 scf7180000183960 99.36 True indel: indel (<= 5bp) 13227417 13229233 169832 168016 CM091759.1 scf7180000183960 99.61 True indel: stretch of mismatches 13225598 13227395 171651 169854 CM091759.1 scf7180000183960 99.67 True indel: indel (<= 5bp) 13224772 13225596 172476 171652 CM091759.1 scf7180000183960 100.0 True indel: indel (<= 5bp) 13224100 13224771 173149 172478 CM091759.1 scf7180000183960 99.11 True indel: indel (<= 5bp) 13223021 13224098 174227 173150 CM091759.1 scf7180000183960 99.63 True indel: indel (<= 5bp) 13221422 13222525 175822 174719 CM091759.1 scf7180000183960 99.28 True indel: indel (<= 5bp) 13220625 13221414 176623 175834 CM091759.1 scf7180000183960 99.49 True fake: scaffold gap size wrong estimation (local) 13215771 13220403 181292 176804 CM091759.1 scf7180000183960 98.65 True fake: scaffold gap size wrong estimation (local) 13191534 13215562 205540 181426 CM091759.1 scf7180000183960 99.09 True local misassembly 13152980 13190926 244331 206370 CM091759.1 scf7180000183960 99.54 True fake: scaffold gap size wrong estimation (local) 13032217 13152648 364782 244490 CM091759.1 scf7180000183960 98.94 True fake: not a misassembly (possible transposable element) 8344918 8346341 364803 366227 CM091760.1 scf7180000183960 99.93 True fake: not a misassembly (possible transposable element) 13012335 13032269 386178 366228 CM091759.1 scf7180000183960 99.61 True local misassembly 13010570 13011070 387965 387465 CM091759.1 scf7180000183960 99.4 True indel: indel (> 5bp) 13008566 13010085 389979 388460 CM091759.1 scf7180000183960 99.14 True fake: scaffold gap size wrong estimation (local) 13007885 13008565 391179 390499 CM091759.1 scf7180000183960 99.41 True indel: indel (> 5bp) 13006840 13007633 392233 391440 CM091759.1 scf7180000183960 98.87 True indel: indel (<= 5bp) 13006109 13006650 392966 392425 CM091759.1 scf7180000183960 99.82 True indel: indel (<= 5bp) 13003848 13005854 395228 393222 CM091759.1 scf7180000183960 99.7 True fake: scaffold gap size wrong estimation (local) 12958041 13003681 440967 395311 CM091759.1 scf7180000183960 99.13 True fake: not a misassembly (possible transposable element) 1599541 1600680 441076 442211 CM091764.1 scf7180000183960 98.33 True fake: not a misassembly (possible transposable element) 12844981 12958121 555330 442233 CM091759.1 scf7180000183960 99.24 True CONTIG scf7180000183960 555366 correct 14644165 14649981 3 5818 CM091758.1 scf7180000183961 98.88 True local misassembly 14650870 14651863 6746 7739 CM091758.1 scf7180000183961 99.7 True fake: scaffold gap size wrong estimation (local) 14652050 14682140 7908 37969 CM091758.1 scf7180000183961 99.13 True fake: scaffold gap size wrong estimation (local) 14682532 14690899 38196 46289 CM091758.1 scf7180000183961 96.11 True fake: scaffold gap size wrong estimation (local) 14691026 14694963 46405 50348 CM091758.1 scf7180000183961 99.04 True fake: scaffold gap size wrong estimation (local) 14695250 14702897 50633 58144 CM091758.1 scf7180000183961 96.08 True fake: scaffold gap size wrong estimation (local) 14703726 14705994 58599 60862 CM091758.1 scf7180000183961 99.38 True fake: scaffold gap size wrong estimation (local) 14706502 14716634 61313 71267 CM091758.1 scf7180000183961 97.75 True fake: scaffold gap size wrong estimation (local) 14717286 14718650 71538 72901 CM091758.1 scf7180000183961 99.49 True fake: scaffold gap size wrong estimation (local) 14719465 14723603 73562 77700 CM091758.1 scf7180000183961 99.13 True fake: scaffold gap size wrong estimation (local) 14723837 14725623 77756 79501 CM091758.1 scf7180000183961 96.52 True local misassembly 14727826 14729568 80925 82667 CM091758.1 scf7180000183961 99.08 True fake: scaffold gap size wrong estimation (local) 14729794 14742235 82892 95223 CM091758.1 scf7180000183961 97.16 True fake: scaffold gap size wrong estimation (local) 14743319 14746041 95557 98301 CM091758.1 scf7180000183961 98.79 True fake: scaffold gap size wrong estimation (local) 14746427 14759148 98495 111215 CM091758.1 scf7180000183961 99.05 True CONTIG scf7180000183961 111215 correct 13023913 13027787 3878 1 CM091758.1 scf7180000183962 99.69 True translocation 5135792 5138604 6691 3879 CM091766.1 scf7180000183962 100.0 True fake: scaffold gap size wrong estimation (local) 5132132 5134931 9792 6996 CM091766.1 scf7180000183962 99.79 True fake: scaffold gap size wrong estimation (local) 5128527 5131260 13028 10294 CM091766.1 scf7180000183962 99.93 True fake: scaffold gap size wrong estimation (local) 5124684 5128395 16965 13144 CM091766.1 scf7180000183962 96.97 True fake: scaffold gap size wrong estimation (local) 5109310 5123947 31766 17130 CM091766.1 scf7180000183962 99.78 True fake: scaffold gap size wrong estimation (local) 5071251 5108771 69334 32070 CM091766.1 scf7180000183962 99.04 True fake: scaffold gap size wrong estimation (local) 4922409 5070986 217277 69484 CM091766.1 scf7180000183962 98.9 True fake: scaffold gap size wrong estimation (local) 4873121 4922247 266488 217376 CM091766.1 scf7180000183962 98.16 True fake: scaffold gap size wrong estimation (local) 4795454 4872974 344047 266728 CM091766.1 scf7180000183962 99.39 True fake: scaffold gap size wrong estimation (local) 4752392 4795389 387127 344142 CM091766.1 scf7180000183962 99.95 True fake: scaffold gap size wrong estimation (local) 4708714 4752286 430821 387249 CM091766.1 scf7180000183962 99.89 True CONTIG scf7180000183962 430821 misassembled 8226578 8229827 1 3262 CM091766.1 scf7180000183963 99.69 True fake: scaffold gap size wrong estimation (local) 8230583 8350413 3392 123296 CM091766.1 scf7180000183963 99.61 True indel: indel (> 5bp) 8350566 8434505 123373 207993 CM091766.1 scf7180000183963 98.83 True fake: scaffold gap size wrong estimation (local) 8434751 8457230 208129 230587 CM091766.1 scf7180000183963 99.78 True fake: scaffold gap size wrong estimation (local) 8457436 8458818 230860 232253 CM091766.1 scf7180000183963 99.93 True fake: scaffold gap size wrong estimation (local) 8460971 8467041 233286 239367 CM091766.1 scf7180000183963 99.55 True translocation, scaffold gap is present 17288263 17291954 241051 244742 CM091751.1 scf7180000183963 99.34 True CONTIG scf7180000183963 244744 misassembled 10940971 10968692 7 27755 CM091765.1 scf7180000183964 97.95 True fake: scaffold gap size wrong estimation (local) 10969677 10972653 28303 31258 CM091765.1 scf7180000183964 97.76 True CONTIG scf7180000183964 31273 correct 1335611 1400052 64509 80 CM091762.1 scf7180000183965 99.49 True fake: scaffold gap size wrong estimation (local) 1326604 1335359 73682 64940 CM091762.1 scf7180000183965 99.55 True indel: indel (> 5bp) 1250646 1326537 149596 73726 CM091762.1 scf7180000183965 99.57 True fake: scaffold gap size wrong estimation (local) 997421 1250502 402766 149720 CM091762.1 scf7180000183965 99.58 True CONTIG scf7180000183965 402786 correct CONTIG scf7180000183966 39017 unaligned 10317265 10399353 82136 38 CM091763.1 scf7180000183967 99.64 True local misassembly 10280437 10316876 118554 82309 CM091763.1 scf7180000183967 98.68 True fake: scaffold gap size wrong estimation (local) 10200164 10280289 198333 118575 CM091763.1 scf7180000183967 98.78 True fake: scaffold gap size wrong estimation (local) 10196852 10198908 201588 199532 CM091763.1 scf7180000183967 99.47 True indel: indel (<= 5bp) 10196172 10196847 202264 201589 CM091763.1 scf7180000183967 99.7 True indel: indel (<= 5bp) 10195450 10196171 202987 202266 CM091763.1 scf7180000183967 99.86 True indel: indel (<= 5bp) 10194677 10195365 203757 203069 CM091763.1 scf7180000183967 99.85 True indel: indel (<= 5bp) 10192968 10194676 205467 203759 CM091763.1 scf7180000183967 99.41 True indel: indel (<= 5bp) 10191629 10192532 206804 205901 CM091763.1 scf7180000183967 99.56 True local misassembly 10188481 10190661 209951 207771 CM091763.1 scf7180000183967 99.36 True local misassembly 10186583 10187622 211837 210798 CM091763.1 scf7180000183967 99.33 True indel: indel (<= 5bp) 10184647 10186582 213774 211839 CM091763.1 scf7180000183967 99.95 True indel: indel (> 5bp) 10184095 10184604 214311 213802 CM091763.1 scf7180000183967 100.0 True indel: indel (<= 5bp) 10181087 10184094 217320 214313 CM091763.1 scf7180000183967 99.9 True indel: indel (<= 5bp) 10178963 10181029 219446 217380 CM091763.1 scf7180000183967 99.9 True indel: indel (<= 5bp) 10177532 10178962 220878 219448 CM091763.1 scf7180000183967 99.65 True indel: indel (<= 5bp) 10175858 10177529 222550 220879 CM091763.1 scf7180000183967 99.76 True indel: indel (<= 5bp) 10174755 10175824 223651 222582 CM091763.1 scf7180000183967 99.72 True indel: indel (<= 5bp) 10172661 10174754 225749 223656 CM091763.1 scf7180000183967 99.86 True indel: indel (<= 5bp) 10170754 10172659 227655 225750 CM091763.1 scf7180000183967 99.9 True indel: indel (<= 5bp) 10169382 10170497 229028 227913 CM091763.1 scf7180000183967 99.82 True indel: indel (<= 5bp) 10164506 10169229 233905 229182 CM091763.1 scf7180000183967 99.89 True indel: indel (<= 5bp) 10163532 10164505 234881 233908 CM091763.1 scf7180000183967 99.9 True indel: indel (<= 5bp) 10161820 10163526 236592 234886 CM091763.1 scf7180000183967 99.47 True indel: indel (<= 5bp) 10159734 10161760 238680 236654 CM091763.1 scf7180000183967 99.8 True indel: indel (<= 5bp) 10158602 10159363 239813 239052 CM091763.1 scf7180000183967 99.87 True fake: scaffold gap size wrong estimation (local) 10157406 10158393 241037 240050 CM091763.1 scf7180000183967 99.29 True indel: indel (<= 5bp) 10155354 10157405 243090 241039 CM091763.1 scf7180000183967 99.9 True indel: indel (<= 5bp) 10154697 10155350 243744 243091 CM091763.1 scf7180000183967 99.85 True fake: scaffold gap size wrong estimation (local) 10153113 10153963 245121 244271 CM091763.1 scf7180000183967 99.53 True indel: indel (<= 5bp) 10152110 10153099 246126 245137 CM091763.1 scf7180000183967 99.49 True indel: indel (<= 5bp) 10150145 10151665 248092 246572 CM091763.1 scf7180000183967 99.8 True indel: indel (<= 5bp) 10149396 10150140 248837 248093 CM091763.1 scf7180000183967 99.6 True indel: indel (<= 5bp) 10147403 10149276 250832 248959 CM091763.1 scf7180000183967 99.95 True indel: indel (<= 5bp) 10145182 10147016 253050 251216 CM091763.1 scf7180000183967 99.67 True indel: indel (<= 5bp) 10143586 10145180 254645 253051 CM091763.1 scf7180000183967 99.62 True indel: indel (<= 5bp) 10142862 10143585 255370 254647 CM091763.1 scf7180000183967 99.45 True indel: indel (<= 5bp) 10142205 10142782 256032 255455 CM091763.1 scf7180000183967 100.0 True indel: indel (<= 5bp) 10141079 10141981 257159 256257 CM091763.1 scf7180000183967 99.89 True indel: indel (<= 5bp) 10140106 10140868 258134 257372 CM091763.1 scf7180000183967 99.48 True indel: indel (<= 5bp) 10138915 10139940 259327 258302 CM091763.1 scf7180000183967 99.61 True indel: indel (<= 5bp) 10137774 10138914 260469 259329 CM091763.1 scf7180000183967 99.91 True indel: indel (> 5bp) 10136583 10137671 261669 260581 CM091763.1 scf7180000183967 99.45 True indel: indel (<= 5bp) 10135915 10136581 262336 261670 CM091763.1 scf7180000183967 100.0 True indel: indel (<= 5bp) 10134633 10135880 263620 262373 CM091763.1 scf7180000183967 99.76 True fake: scaffold gap size wrong estimation (local) 10134084 10134632 264197 263649 CM091763.1 scf7180000183967 100.0 True indel: indel (> 5bp) 10133280 10133926 265012 264366 CM091763.1 scf7180000183967 99.54 True indel: indel (<= 5bp) 10132178 10133169 266118 265127 CM091763.1 scf7180000183967 99.4 True indel: indel (> 5bp) 10130089 10132177 268218 266130 CM091763.1 scf7180000183967 99.81 True indel: indel (<= 5bp) 10126384 10130088 271924 268220 CM091763.1 scf7180000183967 99.84 True indel: indel (<= 5bp) 10120322 10126383 277987 271926 CM091763.1 scf7180000183967 99.77 True indel: indel (> 5bp) 10118767 10119985 279557 278339 CM091763.1 scf7180000183967 99.75 True indel: indel (> 5bp) 10118061 10118766 280276 279571 CM091763.1 scf7180000183967 100.0 True indel: indel (<= 5bp) 10115998 10117715 282340 280623 CM091763.1 scf7180000183967 98.78 True indel: indel (<= 5bp) 10114087 10115997 284252 282342 CM091763.1 scf7180000183967 99.53 True local misassembly 10107847 10108826 285232 284253 CM091763.1 scf7180000183967 99.08 True indel: indel (<= 5bp) 10105342 10107846 287738 285234 CM091763.1 scf7180000183967 99.92 True indel: indel (<= 5bp) 10099415 10105341 293666 287740 CM091763.1 scf7180000183967 99.92 True indel: indel (<= 5bp) 10097470 10099192 295612 293890 CM091763.1 scf7180000183967 99.83 True indel: indel (<= 5bp) 10095682 10097044 297404 296042 CM091763.1 scf7180000183967 99.56 True indel: indel (<= 5bp) 10095041 10095681 298046 297406 CM091763.1 scf7180000183967 99.84 True indel: stretch of mismatches 10094265 10094892 298822 298195 CM091763.1 scf7180000183967 99.68 True indel: indel (<= 5bp) 10093077 10094049 300012 299040 CM091763.1 scf7180000183967 99.18 True indel: indel (<= 5bp) 10092347 10092999 300743 300091 CM091763.1 scf7180000183967 99.54 True indel: indel (<= 5bp) 10091695 10092302 301399 300792 CM091763.1 scf7180000183967 99.67 True indel: indel (<= 5bp) 10091080 10091694 302015 301401 CM091763.1 scf7180000183967 99.67 True indel: indel (<= 5bp) 10090523 10091075 302568 302016 CM091763.1 scf7180000183967 99.46 True indel: indel (> 5bp) 10089946 10090473 303152 302625 CM091763.1 scf7180000183967 99.81 True indel: indel (<= 5bp) 10088656 10089475 304441 303622 CM091763.1 scf7180000183967 99.88 True indel: indel (> 5bp) 10087250 10088433 305838 304655 CM091763.1 scf7180000183967 99.07 True indel: indel (<= 5bp) 10086552 10087249 306537 305840 CM091763.1 scf7180000183967 98.85 True indel: indel (<= 5bp) 10085149 10086550 307939 306538 CM091763.1 scf7180000183967 99.43 True fake: scaffold gap size wrong estimation (local) 10071642 10084012 320778 308398 CM091763.1 scf7180000183967 99.25 True indel: indel (> 5bp) 10046487 10071453 345877 320938 CM091763.1 scf7180000183967 99.07 True fake: scaffold gap size wrong estimation (local) 10036723 10046607 355914 346024 CM091763.1 scf7180000183967 99.38 True indel: indel (> 5bp) 9948319 10036651 443226 355939 CM091763.1 scf7180000183967 98.02 True fake: scaffold gap size wrong estimation (local) 9920088 9947428 471261 443926 CM091763.1 scf7180000183967 99.3 True fake: scaffold gap size wrong estimation (local) 9917658 9919879 473613 471376 CM091763.1 scf7180000183967 98.57 True indel: indel (> 5bp) 9916697 9917533 474561 473725 CM091763.1 scf7180000183967 99.28 True indel: indel (<= 5bp) 9914893 9916696 476366 474563 CM091763.1 scf7180000183967 99.06 True local misassembly 9912990 9914197 478039 476832 CM091763.1 scf7180000183967 99.83 True indel: indel (<= 5bp) 9912236 9912988 478792 478040 CM091763.1 scf7180000183967 99.47 True local misassembly 9910970 9911703 480056 479323 CM091763.1 scf7180000183967 100.0 True local misassembly 9908702 9910096 482328 480934 CM091763.1 scf7180000183967 99.78 True fake: scaffold gap size wrong estimation (local) 9906024 9907029 487732 486727 CM091763.1 scf7180000183967 100.0 True indel: stretch of mismatches 9905233 9905942 488523 487814 CM091763.1 scf7180000183967 95.63 True local misassembly 9902647 9904959 490836 488524 CM091763.1 scf7180000183967 99.48 True fake: scaffold gap size wrong estimation (local) 9901321 9902401 492138 491059 CM091763.1 scf7180000183967 99.35 True CONTIG scf7180000183967 492138 correct 8045758 8051182 2 5470 CM091755.1 scf7180000183968 98.9 True fake: scaffold gap size wrong estimation (local) 8051512 8053921 5657 8062 CM091755.1 scf7180000183968 98.88 True indel: indel (> 5bp) 8054176 8156751 8251 109934 CM091755.1 scf7180000183968 98.06 True fake: scaffold gap size wrong estimation (local) 8157053 8248558 110485 201531 CM091755.1 scf7180000183968 98.67 True fake: scaffold gap size wrong estimation (local) 8248801 8268487 201745 221449 CM091755.1 scf7180000183968 99.19 True fake: scaffold gap size wrong estimation (local) 8268785 8291312 222215 244725 CM091755.1 scf7180000183968 99.26 True fake: scaffold gap size wrong estimation (local) 8291674 8301922 244897 255130 CM091755.1 scf7180000183968 99.4 True fake: scaffold gap size wrong estimation (local) 8302509 8303396 255788 256675 CM091755.1 scf7180000183968 99.44 True local misassembly 8301942 8324675 256696 279442 CM091755.1 scf7180000183968 99.22 True fake: scaffold gap size wrong estimation (local) 8324992 8375393 279745 329834 CM091755.1 scf7180000183968 98.46 True fake: scaffold gap size wrong estimation (local) 8375889 8425744 330063 379793 CM091755.1 scf7180000183968 99.09 True fake: scaffold gap size wrong estimation (local) 8425972 8428948 379985 382961 CM091755.1 scf7180000183968 99.29 True fake: scaffold gap size wrong estimation (local) 8429237 8459324 383050 412931 CM091755.1 scf7180000183968 98.81 True fake: scaffold gap size wrong estimation (local) 8459830 8467017 413447 420638 CM091755.1 scf7180000183968 99.47 True fake: scaffold gap size wrong estimation (local) 8467168 8479134 420782 432766 CM091755.1 scf7180000183968 98.78 True indel: indel (> 5bp) 8479176 8480835 432828 434487 CM091755.1 scf7180000183968 99.7 True indel: indel (<= 5bp) 8480838 8481433 434488 435083 CM091755.1 scf7180000183968 97.32 True local misassembly 8481762 8482356 435084 435678 CM091755.1 scf7180000183968 95.8 True fake: scaffold gap size wrong estimation (local) 8482405 8486670 435770 440035 CM091755.1 scf7180000183968 99.41 True fake: scaffold gap size wrong estimation (local) 8487425 8509665 440595 462607 CM091755.1 scf7180000183968 97.21 True fake: scaffold gap size wrong estimation (local) 8509888 8510715 462751 463578 CM091755.1 scf7180000183968 99.88 True local misassembly 8511229 8511812 463932 464515 CM091755.1 scf7180000183968 96.06 True indel: indel (> 5bp) 8511822 8513285 464516 465979 CM091755.1 scf7180000183968 99.8 True fake: scaffold gap size wrong estimation (local) 8513891 8514897 466309 467347 CM091755.1 scf7180000183968 96.44 True CONTIG scf7180000183968 467379 correct 1956666 1959606 33 2966 CM091752.1 scf7180000183969 99.15 True fake: scaffold gap size wrong estimation (local) 1959723 1989090 3064 32412 CM091752.1 scf7180000183969 99.45 True fake: scaffold gap size wrong estimation (local) 1989456 2007955 32771 51294 CM091752.1 scf7180000183969 99.49 True fake: scaffold gap size wrong estimation (local) 2008153 2025788 51427 69144 CM091752.1 scf7180000183969 99.4 True indel: indel (> 5bp) 2025972 2052098 69335 94979 CM091752.1 scf7180000183969 97.3 True fake: scaffold gap size wrong estimation (local) 2052328 2063839 95444 106996 CM091752.1 scf7180000183969 99.2 True fake: scaffold gap size wrong estimation (local) 2064584 2067101 107737 110285 CM091752.1 scf7180000183969 99.21 True local misassembly 2068062 2152949 110349 193930 CM091752.1 scf7180000183969 97.75 True fake: scaffold gap size wrong estimation (local) 2153179 2217525 194136 256955 CM091752.1 scf7180000183969 96.97 True fake: scaffold gap size wrong estimation (local) 2217829 2362602 257107 401661 CM091752.1 scf7180000183969 99.15 True fake: scaffold gap size wrong estimation (local) 2362739 2397575 401773 436607 CM091752.1 scf7180000183969 99.17 True fake: scaffold gap size wrong estimation (local) 2397867 2583772 436757 622762 CM091752.1 scf7180000183969 99.48 True fake: scaffold gap size wrong estimation (local) 2584462 2848567 622885 887255 CM091752.1 scf7180000183969 99.29 True CONTIG scf7180000183969 887270 correct 3306818 3352599 18 45758 CM091758.1 scf7180000183970 99.53 True indel: indel (> 5bp) 3352696 3359353 45786 52428 CM091758.1 scf7180000183970 99.43 True indel: indel (> 5bp) 3359396 3531282 52438 224443 CM091758.1 scf7180000183970 99.49 True fake: scaffold gap size wrong estimation (local) 3532389 3688165 224892 380978 CM091758.1 scf7180000183970 98.97 True fake: scaffold gap size wrong estimation (local) 3688817 3933360 381157 625428 CM091758.1 scf7180000183970 99.27 True indel: indel (> 5bp) 3933468 3994643 625500 686768 CM091758.1 scf7180000183970 99.28 True indel: indel (> 5bp) 3994717 4037743 686821 729845 CM091758.1 scf7180000183970 99.56 True fake: scaffold gap size wrong estimation (local) 4038167 4077803 730176 769858 CM091758.1 scf7180000183970 99.49 True fake: scaffold gap size wrong estimation (local) 4077925 4110204 770087 802134 CM091758.1 scf7180000183970 99.02 True translocation 9574650 9619743 802135 847220 CM091764.1 scf7180000183970 99.52 True fake: scaffold gap size wrong estimation (local) 9619872 9687074 847323 914277 CM091764.1 scf7180000183970 99.07 True fake: scaffold gap size wrong estimation (local) 9687218 9698580 914430 925459 CM091764.1 scf7180000183970 95.55 True fake: scaffold gap size wrong estimation (local) 9699056 9965368 925650 1191414 CM091764.1 scf7180000183970 99.15 True fake: scaffold gap size wrong estimation (local) 9966082 10004975 1191882 1230827 CM091764.1 scf7180000183970 99.19 True CONTIG scf7180000183970 1230827 misassembled 7407079 7606039 350 199454 CM091763.1 scf7180000183971 99.52 True fake: scaffold gap size wrong estimation (local) 7606303 7872687 199543 464992 CM091763.1 scf7180000183971 99.21 True indel: indel (<= 5bp) 7872691 8017299 464993 609542 CM091763.1 scf7180000183971 99.15 True fake: scaffold gap size wrong estimation (local) 8017515 8066498 609770 658797 CM091763.1 scf7180000183971 99.41 True indel: indel (> 5bp) 8066560 8067754 658839 660033 CM091763.1 scf7180000183971 99.41 True fake: scaffold gap size wrong estimation (local) 8068650 8070293 660446 662086 CM091763.1 scf7180000183971 99.64 True fake: scaffold gap size wrong estimation (local) 8070485 8093046 662167 684714 CM091763.1 scf7180000183971 99.47 True indel: indel (> 5bp) 8093104 8216660 684797 808098 CM091763.1 scf7180000183971 99.22 True local misassembly 8217745 8422788 809076 1014395 CM091763.1 scf7180000183971 99.33 True fake: scaffold gap size wrong estimation (local) 8422927 8469862 1014519 1061506 CM091763.1 scf7180000183971 99.48 True fake: scaffold gap size wrong estimation (local) 8470556 8472323 1062199 1063957 CM091763.1 scf7180000183971 98.08 True CONTIG scf7180000183971 1063957 correct 3624006 3649910 26193 813 CM091764.1 scf7180000183972 97.32 True local misassembly 3555786 3623771 94281 26262 CM091764.1 scf7180000183972 99.58 True indel: indel (> 5bp) 3496744 3555752 153382 94339 CM091764.1 scf7180000183972 99.55 True fake: scaffold gap size wrong estimation (local) 3345393 3496617 304830 153493 CM091764.1 scf7180000183972 99.56 True indel: indel (> 5bp) 3255634 3345357 395750 304899 CM091764.1 scf7180000183972 99.58 True fake: scaffold gap size wrong estimation (local) 3201565 3255527 449961 395838 CM091764.1 scf7180000183972 99.48 True fake: scaffold gap size wrong estimation (local) 3043114 3201282 608014 450236 CM091764.1 scf7180000183972 99.37 True fake: scaffold gap size wrong estimation (local) 2835290 3043143 812140 608524 CM091764.1 scf7180000183972 97.4 True indel: indel (<= 5bp) 2757413 2835212 889871 812222 CM091764.1 scf7180000183972 99.52 True local misassembly 2690823 2756670 956239 890374 CM091764.1 scf7180000183972 99.61 True local misassembly 2677404 2690247 969731 956807 CM091764.1 scf7180000183972 99.09 True fake: scaffold gap size wrong estimation (local) 2675427 2676706 971325 970046 CM091764.1 scf7180000183972 99.84 True local misassembly 2663665 2670348 978399 971716 CM091764.1 scf7180000183972 99.88 True indel: indel (> 5bp) 2662277 2663613 979736 978400 CM091764.1 scf7180000183972 99.7 True indel: indel (> 5bp) 2661001 2662276 981022 979747 CM091764.1 scf7180000183972 99.37 True fake: scaffold gap size wrong estimation (local) 2659075 2661000 983006 981081 CM091764.1 scf7180000183972 99.95 True indel: indel (> 5bp) 2657176 2659059 984890 983007 CM091764.1 scf7180000183972 99.89 True indel: indel (<= 5bp) 2655972 2657175 986095 984892 CM091764.1 scf7180000183972 98.75 True indel: indel (> 5bp) 2655106 2655647 986968 986427 CM091764.1 scf7180000183972 100.0 True indel: indel (<= 5bp) 2641021 2655105 1001054 986970 CM091764.1 scf7180000183972 99.94 True indel: indel (<= 5bp) 2636812 2640765 1005259 1001306 CM091764.1 scf7180000183972 99.9 True indel: indel (<= 5bp) 2635752 2636811 1006320 1005261 CM091764.1 scf7180000183972 100.0 True indel: indel (<= 5bp) 2634618 2635495 1007456 1006579 CM091764.1 scf7180000183972 99.89 True indel: indel (<= 5bp) 2633399 2634617 1008676 1007458 CM091764.1 scf7180000183972 99.92 True indel: indel (<= 5bp) 2631858 2633398 1010219 1008679 CM091764.1 scf7180000183972 99.87 True indel: indel (> 5bp) 2630162 2631632 1011929 1010459 CM091764.1 scf7180000183972 99.52 True indel: indel (<= 5bp) 2629628 2630160 1012462 1011930 CM091764.1 scf7180000183972 99.62 True indel: indel (<= 5bp) 2628090 2629626 1013999 1012463 CM091764.1 scf7180000183972 99.93 True fake: scaffold gap size wrong estimation (local) 2625955 2628089 1016451 1014317 CM091764.1 scf7180000183972 99.72 True indel: indel (<= 5bp) 2623053 2625954 1019358 1016457 CM091764.1 scf7180000183972 99.97 True indel: indel (<= 5bp) 2618994 2623051 1023416 1019359 CM091764.1 scf7180000183972 99.95 True indel: indel (<= 5bp) 2618008 2618993 1024403 1023418 CM091764.1 scf7180000183972 100.0 True indel: indel (<= 5bp) 2616486 2618007 1025928 1024407 CM091764.1 scf7180000183972 100.0 True local misassembly 2613243 2615490 1029181 1026934 CM091764.1 scf7180000183972 100.0 True indel: indel (<= 5bp) 2607353 2613242 1035072 1029183 CM091764.1 scf7180000183972 99.9 True indel: indel (> 5bp) 2605681 2607303 1036759 1035137 CM091764.1 scf7180000183972 99.88 True indel: indel (<= 5bp) 2603903 2605679 1038536 1036760 CM091764.1 scf7180000183972 99.89 True indel: indel (<= 5bp) 2602842 2603901 1039596 1038537 CM091764.1 scf7180000183972 99.91 True indel: indel (<= 5bp) 2599899 2602841 1042543 1039601 CM091764.1 scf7180000183972 100.0 True indel: indel (<= 5bp) 2597077 2599898 1045366 1042545 CM091764.1 scf7180000183972 100.0 True indel: indel (<= 5bp) 2594166 2597076 1048279 1045369 CM091764.1 scf7180000183972 99.97 True indel: indel (<= 5bp) 2592420 2594165 1050026 1048281 CM091764.1 scf7180000183972 100.0 True indel: indel (<= 5bp) 2587575 2592418 1054870 1050027 CM091764.1 scf7180000183972 99.9 True indel: indel (<= 5bp) 2586626 2587573 1055818 1054871 CM091764.1 scf7180000183972 99.79 True indel: indel (> 5bp) 2583022 2586619 1059416 1055819 CM091764.1 scf7180000183972 99.97 True indel: indel (> 5bp) 2547766 2582548 1094511 1059900 CM091764.1 scf7180000183972 99.3 True indel: stretch of mismatches 2544008 2547712 1098274 1094565 CM091764.1 scf7180000183972 99.73 True translocation 5300477 5302513 1100315 1098275 CM091766.1 scf7180000183972 99.37 True CONTIG scf7180000183972 1100315 misassembled 2368205 2388789 22311 1738 CM091760.1 scf7180000183973 99.84 True translocation 11279729 11280407 22991 22312 CM091766.1 scf7180000183973 98.91 True translocation, scaffold gap is present 3595984 3596522 23015 23553 CM091762.1 scf7180000183973 99.2 True translocation 2320867 2368288 70705 23554 CM091760.1 scf7180000183973 99.34 True fake: scaffold gap size wrong estimation (local) 2162978 2320734 228567 70854 CM091760.1 scf7180000183973 99.68 True fake: scaffold gap size wrong estimation (local) 2083047 2162854 308522 228668 CM091760.1 scf7180000183973 99.66 True indel: indel (<= 5bp) 2056766 2082971 334823 308599 CM091760.1 scf7180000183973 99.59 True fake: scaffold gap size wrong estimation (local) 1948496 2055873 442564 335094 CM091760.1 scf7180000183973 99.64 True fake: scaffold gap size wrong estimation (local) 1493663 1948343 897701 442670 CM091760.1 scf7180000183973 99.62 True CONTIG scf7180000183973 897701 misassembled 15562091 15563647 1 1558 CM091754.1 scf7180000183974 99.68 True translocation, scaffold gap is present 10832029 10841676 2479 12143 CM091758.1 scf7180000183974 99.56 True fake: scaffold gap size wrong estimation (local) 10841777 10872044 12232 42342 CM091758.1 scf7180000183974 99.08 True fake: scaffold gap size wrong estimation (local) 10872616 10873651 42718 43754 CM091758.1 scf7180000183974 99.81 True fake: scaffold gap size wrong estimation (local) 10874262 10875337 44310 45391 CM091758.1 scf7180000183974 99.17 True CONTIG scf7180000183974 45391 misassembled 8299141 8323064 24 23972 CM091765.1 scf7180000183975 99.38 True fake: scaffold gap size wrong estimation (local) 8323406 8327321 24153 28068 CM091765.1 scf7180000183975 99.57 True indel: indel (> 5bp) 8327557 8333749 28363 34561 CM091765.1 scf7180000183975 99.37 True indel: indel (<= 5bp) 8333797 8365712 34605 66524 CM091765.1 scf7180000183975 99.65 True indel: indel (> 5bp) 8365921 8387813 66787 88554 CM091765.1 scf7180000183975 98.37 True fake: scaffold gap size wrong estimation (local) 8388008 8425949 88639 126492 CM091765.1 scf7180000183975 99.16 True indel: indel (> 5bp) 8426000 8527467 126553 227311 CM091765.1 scf7180000183975 97.67 True fake: scaffold gap size wrong estimation (local) 8527674 8562699 227468 262827 CM091765.1 scf7180000183975 96.91 True fake: scaffold gap size wrong estimation (local) 8562795 8585170 262994 285317 CM091765.1 scf7180000183975 99.04 True indel: indel (<= 5bp) 8585331 8614836 285482 314925 CM091765.1 scf7180000183975 99.08 True indel: indel (<= 5bp) 8614898 8638137 314989 338002 CM091765.1 scf7180000183975 98.27 True CONTIG scf7180000183975 338014 correct 3360858 3362466 472 2080 CM091754.1 scf7180000183976 99.32 True local misassembly 3363019 3365182 2663 4826 CM091754.1 scf7180000183976 99.17 True indel: indel (> 5bp) 3365520 3366145 5154 5779 CM091754.1 scf7180000183976 99.52 True fake: scaffold gap size wrong estimation (local) 3370205 3371033 6033 6861 CM091754.1 scf7180000183976 99.76 True indel: indel (<= 5bp) 3371036 3372497 6862 8323 CM091754.1 scf7180000183976 99.18 True indel: indel (> 5bp) 3372788 3374052 8533 9797 CM091754.1 scf7180000183976 95.89 True fake: scaffold gap size wrong estimation (local) 3375196 3389978 10666 25163 CM091754.1 scf7180000183976 97.23 True fake: scaffold gap size wrong estimation (local) 3389865 3390505 26971 27611 CM091754.1 scf7180000183976 99.38 True indel: indel (<= 5bp) 3390508 3391292 27612 28396 CM091754.1 scf7180000183976 96.31 True local misassembly 3391800 3392407 28768 29375 CM091754.1 scf7180000183976 99.67 True indel: indel (> 5bp) 3392416 3393618 29395 30597 CM091754.1 scf7180000183976 99.83 True fake: scaffold gap size wrong estimation (local) 3394103 3395073 31366 32336 CM091754.1 scf7180000183976 99.28 True fake: scaffold gap size wrong estimation (local) 3396050 3409329 32864 46177 CM091754.1 scf7180000183976 98.74 True fake: scaffold gap size wrong estimation (local) 3410002 3421194 46485 57594 CM091754.1 scf7180000183976 97.98 True translocation 14299934 14300806 57595 58470 CM091758.1 scf7180000183976 98.72 True fake: scaffold gap size wrong estimation (local) 14300988 14336372 58601 93587 CM091758.1 scf7180000183976 98.03 True fake: scaffold gap size wrong estimation (local) 14337394 14341282 94288 98188 CM091758.1 scf7180000183976 99.15 True fake: scaffold gap size wrong estimation (local) 14342822 14344759 99182 101119 CM091758.1 scf7180000183976 99.07 True local misassembly 14345272 14346020 101120 101868 CM091758.1 scf7180000183976 99.6 True fake: scaffold gap size wrong estimation (local) 14346809 14348403 102635 104229 CM091758.1 scf7180000183976 99.19 True fake: scaffold gap size wrong estimation (local) 14349229 14350101 104599 105470 CM091758.1 scf7180000183976 99.66 True fake: scaffold gap size wrong estimation (local) 14350215 14354083 105663 109538 CM091758.1 scf7180000183976 99.48 True fake: scaffold gap size wrong estimation (local) 14355583 14362224 111184 117827 CM091758.1 scf7180000183976 98.46 True fake: scaffold gap size wrong estimation (local) 14362412 14364709 117962 120264 CM091758.1 scf7180000183976 99.52 True fake: scaffold gap size wrong estimation (local) 14366494 14367278 121604 122395 CM091758.1 scf7180000183976 97.73 True fake: scaffold gap size wrong estimation (local) 14367677 14372808 122775 127940 CM091758.1 scf7180000183976 98.93 True fake: scaffold gap size wrong estimation (local) 14373342 14378177 128088 132919 CM091758.1 scf7180000183976 99.38 True fake: scaffold gap size wrong estimation (local) 14378608 14395579 133102 150116 CM091758.1 scf7180000183976 99.39 True fake: scaffold gap size wrong estimation (local) 14396419 14399705 150616 153903 CM091758.1 scf7180000183976 99.57 True fake: scaffold gap size wrong estimation (local) 14400383 14431161 154201 185016 CM091758.1 scf7180000183976 99.41 True translocation 4944786 4947702 185017 187934 CM091767.1 scf7180000183976 99.9 True CONTIG scf7180000183976 187934 misassembled 10994951 11131510 165 136428 CM091764.1 scf7180000183977 99.24 True indel: indel (<= 5bp) 11131539 11333409 136462 338575 CM091764.1 scf7180000183977 99.24 True fake: scaffold gap size wrong estimation (local) 11333618 11458877 338616 463953 CM091764.1 scf7180000183977 99.45 True fake: scaffold gap size wrong estimation (local) 11459503 11487094 464609 492211 CM091764.1 scf7180000183977 99.67 True fake: scaffold gap size wrong estimation (local) 11487698 11640966 492676 645936 CM091764.1 scf7180000183977 99.55 True indel: indel (> 5bp) 11641154 11643862 646141 648849 CM091764.1 scf7180000183977 99.89 True indel: indel (<= 5bp) 11643863 11645171 648851 650159 CM091764.1 scf7180000183977 99.92 True indel: indel (<= 5bp) 11645174 11647414 650160 652400 CM091764.1 scf7180000183977 99.91 True indel: indel (<= 5bp) 11647416 11647994 652401 652979 CM091764.1 scf7180000183977 100.0 True indel: indel (<= 5bp) 11647995 11648785 652981 653771 CM091764.1 scf7180000183977 100.0 True indel: indel (<= 5bp) 11648790 11651508 653772 656490 CM091764.1 scf7180000183977 99.71 True indel: indel (> 5bp) 11651509 11652122 656497 657110 CM091764.1 scf7180000183977 99.51 True indel: indel (<= 5bp) 11652124 11655287 657111 660274 CM091764.1 scf7180000183977 99.72 True indel: indel (<= 5bp) 11655288 11656422 660276 661410 CM091764.1 scf7180000183977 99.91 True indel: indel (> 5bp) 11656809 11658859 661783 663833 CM091764.1 scf7180000183977 99.66 True local misassembly 11659757 11661935 664737 666915 CM091764.1 scf7180000183977 99.5 True indel: indel (<= 5bp) 11661936 11665648 666918 670630 CM091764.1 scf7180000183977 99.68 True indel: indel (> 5bp) 11665665 11666745 670640 671720 CM091764.1 scf7180000183977 99.91 True indel: indel (<= 5bp) 11666746 11668172 671722 673148 CM091764.1 scf7180000183977 99.86 True indel: indel (> 5bp) 11668200 11668905 673149 673854 CM091764.1 scf7180000183977 99.86 True local misassembly 11672877 11674863 674132 676118 CM091764.1 scf7180000183977 99.75 True indel: indel (<= 5bp) 11674864 11676615 676123 677874 CM091764.1 scf7180000183977 99.54 True indel: indel (<= 5bp) 11676616 11677617 677878 678879 CM091764.1 scf7180000183977 99.7 True indel: indel (<= 5bp) 11678095 11680493 679358 681756 CM091764.1 scf7180000183977 99.75 True indel: indel (> 5bp) 11680494 11681528 681777 682811 CM091764.1 scf7180000183977 99.61 True indel: indel (> 5bp) 11681529 11683144 682818 684433 CM091764.1 scf7180000183977 99.44 True indel: stretch of mismatches 11683236 11685255 684525 686544 CM091764.1 scf7180000183977 99.9 True indel: indel (<= 5bp) 11685257 11685798 686545 687086 CM091764.1 scf7180000183977 99.45 True local misassembly 11686411 11699768 689196 702560 CM091764.1 scf7180000183977 99.74 True relocation, scaffold gap is present, inconsistency = -280114 11706478 11733322 989384 1016110 CM091764.1 scf7180000183977 99.27 True CONTIG scf7180000183977 1186096 misassembled 12293322 12303107 1 9784 CM091757.1 scf7180000183978 99.53 True fake: scaffold gap size wrong estimation (local) 12303417 12332633 10008 39184 CM091757.1 scf7180000183978 99.46 True fake: scaffold gap size wrong estimation (local) 12332789 12538400 39444 245133 CM091757.1 scf7180000183978 99.28 True fake: scaffold gap size wrong estimation (local) 12538668 12542478 245446 249217 CM091757.1 scf7180000183978 98.19 True local misassembly 12543188 12614026 250550 321551 CM091757.1 scf7180000183978 99.82 True fake: scaffold gap size wrong estimation (local) 12614952 12620507 321951 327296 CM091757.1 scf7180000183978 96.22 True CONTIG scf7180000183978 327296 correct 16557631 16558245 615 1 CM091753.1 scf7180000183979 99.35 True fake: scaffold gap size wrong estimation (local) 16554011 16557381 4624 1252 CM091753.1 scf7180000183979 99.08 True relocation, scaffold gap is present, inconsistency = -14003 16566700 16567993 5940 4645 CM091753.1 scf7180000183979 98.69 True CONTIG scf7180000183979 6271 misassembled 16222627 16223624 1079 82 CM091752.1 scf7180000183980 100.0 True CONTIG scf7180000183980 1079 correct 15593095 15602111 1 9108 CM091754.1 scf7180000183981 98.32 True local misassembly 15602469 15623347 9291 30090 CM091754.1 scf7180000183981 99.1 True fake: scaffold gap size wrong estimation (local) 15623719 15631459 30224 37966 CM091754.1 scf7180000183981 99.83 True fake: scaffold gap size wrong estimation (local) 15632042 15645274 38107 51379 CM091754.1 scf7180000183981 99.77 True fake: scaffold gap size wrong estimation (local) 15645745 15650172 51574 55927 CM091754.1 scf7180000183981 98.08 True fake: scaffold gap size wrong estimation (local) 15651128 15652059 56572 57503 CM091754.1 scf7180000183981 100.0 True indel: indel (<= 5bp) 15652060 15654667 57505 60112 CM091754.1 scf7180000183981 99.85 True fake: scaffold gap size wrong estimation (local) 15655185 15738234 60359 143496 CM091754.1 scf7180000183981 99.62 True fake: scaffold gap size wrong estimation (local) 15738056 15740814 143828 146586 CM091754.1 scf7180000183981 99.67 True indel: stretch of mismatches 15740922 15766495 146694 172256 CM091754.1 scf7180000183981 99.58 True indel: indel (> 5bp) 15766669 15796220 172436 201944 CM091754.1 scf7180000183981 99.43 True fake: scaffold gap size wrong estimation (local) 15796522 15978067 202108 383237 CM091754.1 scf7180000183981 99.38 True indel: indel (> 5bp) 15978225 15988937 383384 394121 CM091754.1 scf7180000183981 98.82 True indel: indel (> 5bp) 15989039 16143154 394174 548332 CM091754.1 scf7180000183981 99.36 True fake: scaffold gap size wrong estimation (local) 16143951 16155170 549170 560415 CM091754.1 scf7180000183981 99.14 True fake: scaffold gap size wrong estimation (local) 16155657 16158014 560935 563292 CM091754.1 scf7180000183981 99.62 True indel: stretch of mismatches 16158251 16158808 563529 564086 CM091754.1 scf7180000183981 99.28 True fake: scaffold gap size wrong estimation (local) 16158809 16159610 564583 565384 CM091754.1 scf7180000183981 99.88 True fake: scaffold gap size wrong estimation (local) 16159674 16457019 567338 864819 CM091754.1 scf7180000183981 99.5 True fake: scaffold gap size wrong estimation (local) 16457627 16551823 865034 958660 CM091754.1 scf7180000183981 98.97 True fake: scaffold gap size wrong estimation (local) 16551932 16637632 958771 1044567 CM091754.1 scf7180000183981 99.58 True local misassembly 16638095 16726128 1046124 1133954 CM091754.1 scf7180000183981 99.08 True CONTIG scf7180000183981 1133963 correct 4598616 4726330 17 127688 CM091762.1 scf7180000183982 99.41 True CONTIG scf7180000183982 127688 correct 4720384 4722943 3006 443 CM091768.1 scf7180000183983 99.4 True CONTIG scf7180000183983 3006 correct 9360579 9361549 1815 2785 CM091752.1 scf7180000183984 99.9 True fake: scaffold gap size wrong estimation (local) 9362228 9362969 2982 3723 CM091752.1 scf7180000183984 100.0 True fake: scaffold gap size wrong estimation (local) 9363635 9364835 4526 5726 CM091752.1 scf7180000183984 99.83 True CONTIG scf7180000183984 5726 correct 8896681 8899047 1589 3934 CM091767.1 scf7180000183985 98.87 True CONTIG scf7180000183985 3934 correct 139709 140233 1 518 CM091763.1 scf7180000183986 98.61 True fake: scaffold gap size wrong estimation (local) 140376 141001 833 1458 CM091763.1 scf7180000183986 100.0 True fake: scaffold gap size wrong estimation (local) 141684 147591 2205 8076 CM091763.1 scf7180000183986 98.56 True fake: scaffold gap size wrong estimation (local) 148307 159100 8665 19324 CM091763.1 scf7180000183986 98.51 True CONTIG scf7180000183986 19324 correct CONTIG scf7180000183987 647 unaligned 3405221 3447807 42592 1 CM091765.1 scf7180000183988 99.45 True indel: indel (<= 5bp) 3398077 3405149 49720 42669 CM091765.1 scf7180000183988 98.69 True fake: scaffold gap size wrong estimation (local) 3385749 3397891 61973 49825 CM091765.1 scf7180000183988 99.22 True fake: scaffold gap size wrong estimation (local) 3369086 3385275 77694 62058 CM091765.1 scf7180000183988 95.28 True local misassembly 3351469 3368770 95065 77799 CM091765.1 scf7180000183988 98.9 True indel: indel (> 5bp) 3340044 3351415 106347 95143 CM091765.1 scf7180000183988 96.95 True fake: scaffold gap size wrong estimation (local) 3325307 3339758 121148 106515 CM091765.1 scf7180000183988 98.39 True fake: scaffold gap size wrong estimation (local) 3320836 3324639 125202 121389 CM091765.1 scf7180000183988 99.45 True fake: scaffold gap size wrong estimation (local) 3320085 3320663 125910 125332 CM091765.1 scf7180000183988 100.0 True indel: indel (<= 5bp) 3319085 3320084 126911 125912 CM091765.1 scf7180000183988 99.3 True local misassembly 3317419 3318262 128562 127719 CM091765.1 scf7180000183988 99.29 True indel: stretch of mismatches 3316067 3316949 129914 129032 CM091765.1 scf7180000183988 99.32 True fake: scaffold gap size wrong estimation (local) 3314019 3314877 131620 130762 CM091765.1 scf7180000183988 99.42 True fake: scaffold gap size wrong estimation (local) 3312165 3313245 133275 132195 CM091765.1 scf7180000183988 99.63 True indel: indel (<= 5bp) 3311510 3312163 133929 133276 CM091765.1 scf7180000183988 99.24 True indel: indel (> 5bp) 3310257 3311316 135175 134116 CM091765.1 scf7180000183988 99.34 True local misassembly 3308462 3309333 136973 136102 CM091765.1 scf7180000183988 96.9 True local misassembly 3306841 3308236 138369 136974 CM091765.1 scf7180000183988 99.79 True indel: stretch of mismatches 3305282 3306745 139928 138465 CM091765.1 scf7180000183988 99.39 True local misassembly 3273724 3304754 171483 140442 CM091765.1 scf7180000183988 99.35 True local misassembly 3263039 3273333 181908 171591 CM091765.1 scf7180000183988 98.86 True fake: scaffold gap size wrong estimation (local) 3258874 3262985 186047 181973 CM091765.1 scf7180000183988 97.96 True fake: scaffold gap size wrong estimation (local) 3256590 3258617 188266 186239 CM091765.1 scf7180000183988 99.7 True fake: scaffold gap size wrong estimation (local) 3254114 3255720 190563 188957 CM091765.1 scf7180000183988 99.44 True fake: scaffold gap size wrong estimation (local) 3253409 3254008 191425 190826 CM091765.1 scf7180000183988 99.33 True indel: indel (<= 5bp) 3252432 3253407 192401 191426 CM091765.1 scf7180000183988 99.08 True indel: indel (<= 5bp) 3251647 3252429 193184 192402 CM091765.1 scf7180000183988 99.23 True indel: indel (<= 5bp) 3250118 3251613 194710 193215 CM091765.1 scf7180000183988 99.33 True indel: indel (<= 5bp) 3249525 3250079 195305 194751 CM091765.1 scf7180000183988 99.46 True indel: indel (> 5bp) 3248916 3249515 195905 195306 CM091765.1 scf7180000183988 99.17 True indel: indel (<= 5bp) 3246972 3248658 197845 196159 CM091765.1 scf7180000183988 99.64 True indel: indel (<= 5bp) 3245549 3246969 199266 197846 CM091765.1 scf7180000183988 99.44 True indel: indel (<= 5bp) 3243476 3245546 201337 199267 CM091765.1 scf7180000183988 99.13 True local misassembly 3242528 3243323 202175 201380 CM091765.1 scf7180000183988 97.61 True fake: scaffold gap size wrong estimation (local) 3240594 3241376 204746 203964 CM091765.1 scf7180000183988 99.74 True indel: indel (<= 5bp) 3239457 3240577 205885 204765 CM091765.1 scf7180000183988 99.11 True indel: indel (<= 5bp) 3238178 3239456 207167 205889 CM091765.1 scf7180000183988 99.61 True indel: indel (<= 5bp) 3237634 3238177 207712 207169 CM091765.1 scf7180000183988 99.63 True fake: scaffold gap size wrong estimation (local) 3236668 3237178 208686 208176 CM091765.1 scf7180000183988 99.02 True indel: indel (> 5bp) 3235572 3236660 209775 208687 CM091765.1 scf7180000183988 99.63 True fake: scaffold gap size wrong estimation (local) 3233114 3233886 212235 211463 CM091765.1 scf7180000183988 96.51 True local misassembly 3231542 3232721 213589 212410 CM091765.1 scf7180000183988 99.75 True indel: indel (> 5bp) 3230577 3231403 214533 213707 CM091765.1 scf7180000183988 99.88 True local misassembly 3229199 3230177 215727 214749 CM091765.1 scf7180000183988 98.47 True indel: indel (<= 5bp) 3227433 3229198 217494 215729 CM091765.1 scf7180000183988 99.83 True local misassembly 3225584 3226133 219346 218797 CM091765.1 scf7180000183988 99.64 True indel: indel (<= 5bp) 3223200 3225583 221731 219348 CM091765.1 scf7180000183988 99.54 True local misassembly 3221050 3222287 223573 222336 CM091765.1 scf7180000183988 98.95 True local misassembly 3201543 3220286 243017 224329 CM091765.1 scf7180000183988 98.93 True indel: indel (> 5bp) 3186075 3201437 258341 243157 CM091765.1 scf7180000183988 97.81 True local misassembly 3184685 3185490 259783 258978 CM091765.1 scf7180000183988 99.01 True indel: indel (<= 5bp) 3183691 3184487 260779 259983 CM091765.1 scf7180000183988 99.12 True indel: indel (<= 5bp) 3182940 3183690 261531 260781 CM091765.1 scf7180000183988 100.0 True indel: indel (> 5bp) 3182257 3182931 262206 261532 CM091765.1 scf7180000183988 99.85 True fake: scaffold gap size wrong estimation (local) 3179818 3180545 264632 263905 CM091765.1 scf7180000183988 99.04 True fake: scaffold gap size wrong estimation (local) 3156914 3179087 287011 265347 CM091765.1 scf7180000183988 95.83 True fake: scaffold gap size wrong estimation (local) 3147837 3156809 295919 287114 CM091765.1 scf7180000183988 97.47 True fake: scaffold gap size wrong estimation (local) 3145589 3147570 298149 296168 CM091765.1 scf7180000183988 99.55 True local misassembly 3140011 3141894 300033 298150 CM091765.1 scf7180000183988 99.52 True indel: indel (<= 5bp) 3139417 3140005 300622 300034 CM091765.1 scf7180000183988 99.15 True indel: indel (<= 5bp) 3137895 3139413 302141 300623 CM091765.1 scf7180000183988 99.47 True indel: indel (<= 5bp) 3136940 3137858 303095 302177 CM091765.1 scf7180000183988 99.35 True local misassembly 3134576 3135883 305390 304088 CM091765.1 scf7180000183988 98.24 True fake: scaffold gap size wrong estimation (local) 3132700 3134009 307294 305954 CM091765.1 scf7180000183988 98.49 True CONTIG scf7180000183988 307294 correct 6985510 6993774 8293 2 CM091764.1 scf7180000183989 98.89 True fake: scaffold gap size wrong estimation (local) 6924121 6985176 69488 8493 CM091764.1 scf7180000183989 99.42 True fake: scaffold gap size wrong estimation (local) 6859852 6922880 132962 70137 CM091764.1 scf7180000183989 99.29 True fake: scaffold gap size wrong estimation (local) 6678241 6859317 315708 133082 CM091764.1 scf7180000183989 99.21 True local misassembly 6578381 6678136 415475 315723 CM091764.1 scf7180000183989 99.39 True indel: indel (> 5bp) 6496207 6578286 497588 415588 CM091764.1 scf7180000183989 99.07 True indel: indel (> 5bp) 6469707 6496021 524184 497782 CM091764.1 scf7180000183989 99.47 True indel: indel (> 5bp) 6462680 6469668 531283 524236 CM091764.1 scf7180000183989 98.78 True fake: scaffold gap size wrong estimation (local) 6434474 6462230 559313 531527 CM091764.1 scf7180000183989 99.51 True fake: scaffold gap size wrong estimation (local) 6287623 6434395 706371 559383 CM091764.1 scf7180000183989 99.42 True indel: indel (<= 5bp) 6076172 6287592 918035 706405 CM091764.1 scf7180000183989 99.66 True indel: indel (> 5bp) 6061794 6076126 932441 918088 CM091764.1 scf7180000183989 99.1 True fake: scaffold gap size wrong estimation (local) 5906029 6061691 1088304 932698 CM091764.1 scf7180000183989 99.39 True fake: scaffold gap size wrong estimation (local) 5898101 5905846 1096605 1088879 CM091764.1 scf7180000183989 99.42 True fake: scaffold gap size wrong estimation (local) 5875459 5898079 1119316 1096710 CM091764.1 scf7180000183989 99.39 True CONTIG scf7180000183989 1119340 correct 3562187 3562989 793 1 CM091768.1 scf7180000183990 98.66 True fake: scaffold gap size wrong estimation (local) 3526931 3561952 36114 1224 CM091768.1 scf7180000183990 99.31 True indel: indel (> 5bp) 3518569 3526885 44554 36144 CM091768.1 scf7180000183990 98.81 True fake: scaffold gap size wrong estimation (local) 3517634 3518333 45450 44751 CM091768.1 scf7180000183990 100.0 True indel: indel (<= 5bp) 3515448 3517632 47635 45451 CM091768.1 scf7180000183990 99.95 True indel: indel (<= 5bp) 3514767 3515446 48315 47636 CM091768.1 scf7180000183990 99.56 True indel: indel (<= 5bp) 3512734 3514766 50349 48317 CM091768.1 scf7180000183990 97.69 True fake: scaffold gap size wrong estimation (local) 3511229 3512733 51867 50363 CM091768.1 scf7180000183990 100.0 True local misassembly 3510205 3510920 52583 51868 CM091768.1 scf7180000183990 100.0 True local misassembly 3507357 3509885 55112 52584 CM091768.1 scf7180000183990 99.92 True indel: indel (<= 5bp) 3506443 3507168 56028 55303 CM091768.1 scf7180000183990 98.48 True fake: scaffold gap size wrong estimation (local) 3503317 3504034 58600 57864 CM091768.1 scf7180000183990 99.1 True fake: scaffold gap size wrong estimation (local) 3498051 3502891 63836 59006 CM091768.1 scf7180000183990 97.15 True fake: scaffold gap size wrong estimation (local) 3480018 3497611 81589 64001 CM091768.1 scf7180000183990 98.93 True CONTIG scf7180000183990 81589 correct 7525105 7527058 1 1954 CM091764.1 scf7180000183991 99.9 True CONTIG scf7180000183991 1954 correct CONTIG scf7180000183992 414 unaligned 1398097 1413196 1 15118 CM091762.1 scf7180000183993 99.58 True fake: scaffold gap size wrong estimation (local) 1413375 1423085 15246 24952 CM091762.1 scf7180000183993 99.92 True fake: scaffold gap size wrong estimation (local) 1423711 1433503 25570 35362 CM091762.1 scf7180000183993 99.96 True indel: indel (> 5bp) 1433504 1435205 35374 37075 CM091762.1 scf7180000183993 99.88 True indel: indel (<= 5bp) 1435206 1436853 37080 38727 CM091762.1 scf7180000183993 99.82 True indel: indel (<= 5bp) 1436854 1440838 38731 42715 CM091762.1 scf7180000183993 99.9 True indel: indel (<= 5bp) 1440840 1444402 42716 46278 CM091762.1 scf7180000183993 99.94 True indel: indel (<= 5bp) 1444403 1447099 46280 48976 CM091762.1 scf7180000183993 99.89 True relocation, inconsistency = 7744 1454844 1455427 48977 49560 CM091762.1 scf7180000183993 99.49 True indel: indel (<= 5bp) 1455429 1456578 49561 50710 CM091762.1 scf7180000183993 100.0 True fake: scaffold gap size wrong estimation (local) 1457420 1463770 51571 57921 CM091762.1 scf7180000183993 99.86 True indel: indel (<= 5bp) 1463771 1466186 57923 60338 CM091762.1 scf7180000183993 99.67 True indel: indel (> 5bp) 1466202 1468203 60339 62340 CM091762.1 scf7180000183993 99.75 True fake: scaffold gap size wrong estimation (local) 1468204 1469822 62366 63984 CM091762.1 scf7180000183993 99.69 True indel: indel (<= 5bp) 1469823 1472572 63986 66735 CM091762.1 scf7180000183993 99.96 True indel: indel (<= 5bp) 1472573 1474830 66737 68994 CM091762.1 scf7180000183993 99.73 True indel: indel (<= 5bp) 1474831 1475481 68996 69646 CM091762.1 scf7180000183993 100.0 True indel: indel (<= 5bp) 1475829 1476328 69997 70496 CM091762.1 scf7180000183993 99.8 True local misassembly 1477142 1478123 71313 72294 CM091762.1 scf7180000183993 99.49 True indel: indel (<= 5bp) 1478124 1482213 72296 76385 CM091762.1 scf7180000183993 99.85 True indel: indel (<= 5bp) 1482214 1484057 76387 78230 CM091762.1 scf7180000183993 100.0 True indel: indel (> 5bp) 1484088 1486758 78267 80937 CM091762.1 scf7180000183993 99.89 True indel: indel (<= 5bp) 1486759 1487976 80941 82158 CM091762.1 scf7180000183993 98.93 True local misassembly 1488509 1491120 82700 85311 CM091762.1 scf7180000183993 99.81 True indel: indel (<= 5bp) 1491121 1492267 85313 86459 CM091762.1 scf7180000183993 99.91 True indel: indel (<= 5bp) 1492269 1493465 86460 87656 CM091762.1 scf7180000183993 99.92 True indel: indel (> 5bp) 1493466 1494296 87669 88499 CM091762.1 scf7180000183993 99.76 True indel: indel (<= 5bp) 1494297 1496317 88501 90521 CM091762.1 scf7180000183993 99.9 True indel: indel (<= 5bp) 1496318 1499415 90523 93620 CM091762.1 scf7180000183993 99.74 True indel: indel (<= 5bp) 1499417 1500644 93621 94848 CM091762.1 scf7180000183993 99.84 True indel: indel (<= 5bp) 1500645 1501921 94852 96128 CM091762.1 scf7180000183993 99.77 True indel: indel (<= 5bp) 1501923 1503580 96129 97786 CM091762.1 scf7180000183993 99.94 True fake: scaffold gap size wrong estimation (local) 1504353 1547764 98304 141752 CM091762.1 scf7180000183993 99.62 True indel: indel (> 5bp) 1547959 1569233 141906 163199 CM091762.1 scf7180000183993 99.69 True fake: scaffold gap size wrong estimation (local) 1569836 1643566 163592 237444 CM091762.1 scf7180000183993 99.49 True fake: scaffold gap size wrong estimation (local) 1643932 1660923 237534 254402 CM091762.1 scf7180000183993 98.37 True CONTIG scf7180000183993 254418 misassembled 5704354 5719353 15042 38 CM091759.1 scf7180000183994 99.49 True fake: scaffold gap size wrong estimation (local) 5614851 5701987 102509 15752 CM091759.1 scf7180000183994 99.13 True local misassembly 5568370 5614185 148455 102689 CM091759.1 scf7180000183994 99.33 True indel: indel (> 5bp) 5470404 5568036 246463 148758 CM091759.1 scf7180000183994 99.65 True fake: scaffold gap size wrong estimation (local) 5287093 5470195 429243 246618 CM091759.1 scf7180000183994 99.08 True CONTIG scf7180000183994 429243 correct 403114 412074 587 9498 CM091764.1 scf7180000183995 98.37 True fake: scaffold gap size wrong estimation (local) 412292 421823 9622 18959 CM091764.1 scf7180000183995 97.9 True fake: scaffold gap size wrong estimation (local) 423397 435036 20085 31726 CM091764.1 scf7180000183995 99.89 True fake: scaffold gap size wrong estimation (extensive) 443934 447634 31862 35579 CM091764.1 scf7180000183995 99.95 True CONTIG scf7180000183995 35579 correct 14451081 14455667 4571 1 CM091757.1 scf7180000183996 99.04 True fake: scaffold gap size wrong estimation (local) 14448429 14450426 7024 5027 CM091757.1 scf7180000183996 99.6 True fake: scaffold gap size wrong estimation (local) 14445573 14446073 9900 9400 CM091757.1 scf7180000183996 98.4 True fake: scaffold gap size wrong estimation (local) 14444298 14445328 11038 10006 CM091757.1 scf7180000183996 99.4 True fake: scaffold gap size wrong estimation (local) 14443295 14443879 11736 11152 CM091757.1 scf7180000183996 99.83 True fake: scaffold gap size wrong estimation (local) 14194945 14443136 259758 11908 CM091757.1 scf7180000183996 99.69 True indel: indel (<= 5bp) 14188242 14194916 266272 259784 CM091757.1 scf7180000183996 95.76 True fake: scaffold gap size wrong estimation (local) 14169801 14188067 284527 266418 CM091757.1 scf7180000183996 97.51 True fake: scaffold gap size wrong estimation (local) 14168574 14169075 285498 284998 CM091757.1 scf7180000183996 99.8 True fake: scaffold gap size wrong estimation (local) 14165702 14167801 287926 285832 CM091757.1 scf7180000183996 99.29 True fake: scaffold gap size wrong estimation (local) 14155251 14164867 297964 288354 CM091757.1 scf7180000183996 99.77 True fake: scaffold gap size wrong estimation (local) 14151651 14152271 300400 299780 CM091757.1 scf7180000183996 99.68 True CONTIG scf7180000183996 300400 correct 1558310 1562649 4360 28 CM091768.1 scf7180000183997 98.46 True local misassembly 1557479 1557984 4988 4483 CM091768.1 scf7180000183997 99.01 True indel: indel (> 5bp) 1555290 1557082 7170 5378 CM091768.1 scf7180000183997 99.22 True indel: indel (<= 5bp) 1554264 1555287 8194 7171 CM091768.1 scf7180000183997 99.22 True local misassembly 1552265 1553143 9073 8195 CM091768.1 scf7180000183997 99.66 True indel: indel (> 5bp) 1551635 1552250 9689 9074 CM091768.1 scf7180000183997 99.51 True indel: indel (> 5bp) 1550744 1551632 10590 9702 CM091768.1 scf7180000183997 98.65 True local misassembly 1549284 1550353 11660 10591 CM091768.1 scf7180000183997 99.44 True indel: indel (<= 5bp) 1548760 1549280 12181 11661 CM091768.1 scf7180000183997 99.23 True indel: indel (<= 5bp) 1526866 1548440 33905 12497 CM091768.1 scf7180000183997 98.6 True fake: scaffold gap size wrong estimation (local) 1525692 1526575 35063 34180 CM091768.1 scf7180000183997 98.87 True indel: indel (> 5bp) 1523525 1525426 37250 35349 CM091768.1 scf7180000183997 99.74 True indel: indel (> 5bp) 1522534 1523524 38258 37268 CM091768.1 scf7180000183997 99.5 True fake: scaffold gap size wrong estimation (local) 1520299 1521463 40431 39267 CM091768.1 scf7180000183997 99.31 True indel: indel (<= 5bp) 1519565 1520294 41161 40432 CM091768.1 scf7180000183997 99.59 True indel: indel (> 5bp) 1517419 1519060 43301 41660 CM091768.1 scf7180000183997 99.63 True indel: indel (<= 5bp) 1516501 1517338 44221 43384 CM091768.1 scf7180000183997 99.52 True indel: indel (<= 5bp) 1514674 1516500 46049 44223 CM091768.1 scf7180000183997 99.62 True local misassembly 1512977 1513673 47746 47050 CM091768.1 scf7180000183997 99.43 True indel: indel (<= 5bp) 1512356 1512976 48368 47748 CM091768.1 scf7180000183997 99.36 True indel: indel (> 5bp) 1511482 1512348 49235 48369 CM091768.1 scf7180000183997 99.65 True indel: stretch of mismatches 1510423 1511219 50294 49498 CM091768.1 scf7180000183997 99.87 True indel: indel (<= 5bp) 1509859 1510422 50859 50296 CM091768.1 scf7180000183997 99.29 True local misassembly 1505476 1508596 55250 52130 CM091768.1 scf7180000183997 99.42 True indel: indel (<= 5bp) 1504021 1505335 56700 55386 CM091768.1 scf7180000183997 99.77 True indel: indel (<= 5bp) 1502891 1504020 57831 56702 CM091768.1 scf7180000183997 99.73 True indel: indel (<= 5bp) 1502350 1502890 58373 57833 CM091768.1 scf7180000183997 99.45 True indel: indel (<= 5bp) 1501752 1502347 58969 58374 CM091768.1 scf7180000183997 100.0 True indel: indel (<= 5bp) 1501092 1501751 59630 58971 CM091768.1 scf7180000183997 98.94 True indel: indel (> 5bp) 1500272 1501048 60444 59668 CM091768.1 scf7180000183997 99.49 True indel: indel (> 5bp) 1498769 1500253 61929 60445 CM091768.1 scf7180000183997 99.87 True indel: indel (<= 5bp) 1498172 1498768 62527 61931 CM091768.1 scf7180000183997 98.83 True indel: indel (> 5bp) 1496972 1497769 63721 62924 CM091768.1 scf7180000183997 100.0 True indel: indel (<= 5bp) 1496312 1496960 64383 63735 CM091768.1 scf7180000183997 99.23 True indel: indel (<= 5bp) 1495807 1496308 64885 64384 CM091768.1 scf7180000183997 100.0 True local misassembly 1493785 1495200 66910 65495 CM091768.1 scf7180000183997 99.79 True indel: indel (<= 5bp) 1492761 1493483 67933 67211 CM091768.1 scf7180000183997 99.72 True local misassembly 1489397 1491584 71299 69112 CM091768.1 scf7180000183997 99.82 True indel: indel (<= 5bp) 1486510 1488973 74188 71725 CM091768.1 scf7180000183997 99.76 True indel: indel (<= 5bp) 1485997 1486508 74700 74189 CM091768.1 scf7180000183997 98.83 True local misassembly 1482648 1484735 77580 75493 CM091768.1 scf7180000183997 99.76 True fake: scaffold gap size wrong estimation (local) 1477421 1478618 81140 79943 CM091768.1 scf7180000183997 99.33 True indel: indel (<= 5bp) 1476139 1477105 82419 81453 CM091768.1 scf7180000183997 99.79 True indel: indel (<= 5bp) 1474721 1476138 83838 82421 CM091768.1 scf7180000183997 99.72 True indel: indel (<= 5bp) 1473058 1474719 85500 83839 CM091768.1 scf7180000183997 99.64 True local misassembly 1471500 1472338 86449 85611 CM091768.1 scf7180000183997 99.64 True indel: indel (<= 5bp) 1469675 1471498 88273 86450 CM091768.1 scf7180000183997 99.29 True indel: indel (<= 5bp) 1468392 1469673 89555 88274 CM091768.1 scf7180000183997 95.48 True fake: scaffold gap size wrong estimation (local) 1467192 1468073 90688 89807 CM091768.1 scf7180000183997 99.55 True indel: indel (<= 5bp) 1466646 1467191 91235 90690 CM091768.1 scf7180000183997 98.53 True local misassembly 1463174 1465510 94670 92334 CM091768.1 scf7180000183997 99.79 True indel: indel (<= 5bp) 1461973 1463043 95872 94802 CM091768.1 scf7180000183997 99.07 True indel: indel (<= 5bp) 1460503 1461652 97345 96196 CM091768.1 scf7180000183997 99.48 True indel: indel (<= 5bp) 1459606 1460502 98243 97347 CM091768.1 scf7180000183997 98.44 True indel: indel (<= 5bp) 1459065 1459582 98786 98269 CM091768.1 scf7180000183997 99.61 True indel: indel (> 5bp) 1458485 1458986 99359 98858 CM091768.1 scf7180000183997 99.4 True indel: indel (<= 5bp) 1457625 1458484 100220 99361 CM091768.1 scf7180000183997 99.07 True local misassembly 1456088 1456746 100879 100221 CM091768.1 scf7180000183997 99.54 True local misassembly 1452757 1454493 103314 101578 CM091768.1 scf7180000183997 99.25 True indel: indel (<= 5bp) 1451069 1452393 105000 103676 CM091768.1 scf7180000183997 99.85 True indel: indel (<= 5bp) 1450559 1451067 105509 105001 CM091768.1 scf7180000183997 100.0 True indel: indel (<= 5bp) 1449358 1450558 106711 105511 CM091768.1 scf7180000183997 99.5 True local misassembly 1422580 1446679 132739 109289 CM091768.1 scf7180000183997 96.22 True fake: scaffold gap size wrong estimation (local) 1420494 1421623 134871 133742 CM091768.1 scf7180000183997 97.35 True indel: indel (<= 5bp) 1419824 1420488 135536 134872 CM091768.1 scf7180000183997 99.25 True local misassembly 1418396 1418907 136991 136480 CM091768.1 scf7180000183997 98.83 True local misassembly 1413732 1417766 141651 137617 CM091768.1 scf7180000183997 99.38 True local misassembly 1409060 1411329 145526 143257 CM091768.1 scf7180000183997 99.3 True indel: indel (<= 5bp) 1408031 1409038 146556 145549 CM091768.1 scf7180000183997 99.21 True indel: indel (<= 5bp) 1407284 1408030 147306 146560 CM091768.1 scf7180000183997 99.46 True local misassembly 1405634 1406588 148959 148005 CM091768.1 scf7180000183997 99.69 True indel: indel (<= 5bp) 1404971 1405633 149623 148961 CM091768.1 scf7180000183997 99.7 True indel: indel (> 5bp) 1403277 1404505 151305 150077 CM091768.1 scf7180000183997 99.84 True local misassembly 1394958 1402604 159614 151966 CM091768.1 scf7180000183997 99.36 True local misassembly 1390624 1393728 163381 160277 CM091768.1 scf7180000183997 99.48 True indel: indel (> 5bp) 1387914 1390613 166083 163384 CM091768.1 scf7180000183997 99.63 True indel: indel (<= 5bp) 1384536 1387913 169462 166085 CM091768.1 scf7180000183997 99.29 True indel: indel (<= 5bp) 1382845 1384535 171157 169467 CM091768.1 scf7180000183997 99.59 True indel: stretch of mismatches 1381313 1382712 172689 171290 CM091768.1 scf7180000183997 99.5 True local misassembly 1379645 1381005 174050 172690 CM091768.1 scf7180000183997 99.63 True indel: indel (<= 5bp) 1378888 1379644 174808 174052 CM091768.1 scf7180000183997 99.6 True local misassembly 1374359 1378239 178774 174894 CM091768.1 scf7180000183997 99.54 True local misassembly 1370413 1372280 181716 179849 CM091768.1 scf7180000183997 99.57 True indel: indel (<= 5bp) 1368260 1370332 183868 181796 CM091768.1 scf7180000183997 99.42 True local misassembly 1366537 1367622 185585 184500 CM091768.1 scf7180000183997 99.26 True local misassembly 1365028 1365797 187097 186328 CM091768.1 scf7180000183997 99.87 True indel: indel (<= 5bp) 1363912 1364843 188214 187283 CM091768.1 scf7180000183997 99.89 True local misassembly 1361418 1362210 190505 189713 CM091768.1 scf7180000183997 99.62 True indel: indel (<= 5bp) 1360868 1361417 191056 190507 CM091768.1 scf7180000183997 100.0 True indel: indel (<= 5bp) 1359362 1360636 192564 191290 CM091768.1 scf7180000183997 99.45 True indel: indel (<= 5bp) 1358543 1359356 193378 192565 CM091768.1 scf7180000183997 98.77 True local misassembly 1356718 1357484 194832 194066 CM091768.1 scf7180000183997 98.83 True indel: indel (> 5bp) 1355861 1356717 195709 194853 CM091768.1 scf7180000183997 99.07 True indel: indel (<= 5bp) 1354795 1355860 196776 195711 CM091768.1 scf7180000183997 99.44 True indel: indel (<= 5bp) 1353707 1354542 197867 197032 CM091768.1 scf7180000183997 99.52 True indel: indel (<= 5bp) 1352169 1353350 199407 198226 CM091768.1 scf7180000183997 98.98 True indel: indel (<= 5bp) 1351579 1352168 199998 199409 CM091768.1 scf7180000183997 99.83 True local misassembly 1348266 1350206 202378 200438 CM091768.1 scf7180000183997 98.87 True indel: indel (<= 5bp) 1347044 1348265 203601 202380 CM091768.1 scf7180000183997 99.67 True local misassembly 1344376 1345888 205336 203824 CM091768.1 scf7180000183997 99.41 True local misassembly 1342384 1343171 206750 205963 CM091768.1 scf7180000183997 99.37 True indel: stretch of mismatches 1341447 1342066 207687 207068 CM091768.1 scf7180000183997 99.84 True indel: indel (<= 5bp) 1340128 1341169 209011 207970 CM091768.1 scf7180000183997 99.14 True indel: indel (> 5bp) 1337724 1340103 211408 209029 CM091768.1 scf7180000183997 99.79 True indel: indel (<= 5bp) 1336917 1337627 212214 211504 CM091768.1 scf7180000183997 99.16 True local misassembly 1335085 1335741 214053 213397 CM091768.1 scf7180000183997 99.54 True indel: indel (> 5bp) 1334297 1334799 214808 214306 CM091768.1 scf7180000183997 100.0 True indel: indel (<= 5bp) 1332393 1334021 216714 215086 CM091768.1 scf7180000183997 99.02 True indel: indel (<= 5bp) 1331251 1332392 217857 216716 CM091768.1 scf7180000183997 99.65 True indel: indel (<= 5bp) 1330388 1331249 218719 217858 CM091768.1 scf7180000183997 98.96 True indel: indel (> 5bp) 1329759 1330380 219341 218720 CM091768.1 scf7180000183997 99.84 True indel: indel (<= 5bp) 1328990 1329515 220112 219587 CM091768.1 scf7180000183997 97.53 True indel: indel (> 5bp) 1327611 1328989 221498 220120 CM091768.1 scf7180000183997 99.64 True local misassembly 1324319 1326220 223811 221910 CM091768.1 scf7180000183997 99.47 True indel: indel (<= 5bp) 1323739 1324316 224389 223812 CM091768.1 scf7180000183997 99.31 True indel: indel (> 5bp) 1321950 1323738 226194 224406 CM091768.1 scf7180000183997 99.61 True indel: indel (<= 5bp) 1320877 1321948 227266 226195 CM091768.1 scf7180000183997 99.25 True indel: indel (> 5bp) 1319770 1320452 228353 227671 CM091768.1 scf7180000183997 99.12 True indel: indel (<= 5bp) 1318052 1319768 230070 228354 CM091768.1 scf7180000183997 99.53 True local misassembly 1313329 1317347 234242 230224 CM091768.1 scf7180000183997 99.63 True indel: indel (<= 5bp) 1312425 1313327 235145 234243 CM091768.1 scf7180000183997 99.34 True local misassembly 1308531 1310551 237697 235677 CM091768.1 scf7180000183997 99.65 True indel: indel (<= 5bp) 1307051 1308528 239175 237698 CM091768.1 scf7180000183997 99.86 True indel: indel (<= 5bp) 1304153 1307050 242074 239177 CM091768.1 scf7180000183997 99.83 True local misassembly 1301355 1303617 244873 242611 CM091768.1 scf7180000183997 99.91 True indel: indel (> 5bp) 1299474 1301173 246765 245066 CM091768.1 scf7180000183997 99.35 True local misassembly 1297199 1298393 249050 247856 CM091768.1 scf7180000183997 99.5 True indel: indel (<= 5bp) 1295901 1297198 250349 249052 CM091768.1 scf7180000183997 99.54 True indel: indel (> 5bp) 1294270 1295634 251988 250624 CM091768.1 scf7180000183997 99.56 True local misassembly 1293062 1293741 252933 252254 CM091768.1 scf7180000183997 99.56 True indel: indel (<= 5bp) 1291801 1293061 254195 252935 CM091768.1 scf7180000183997 99.76 True local misassembly 1289286 1290797 256704 255193 CM091768.1 scf7180000183997 99.54 True fake: scaffold gap size wrong estimation (local) 1286581 1288200 259384 257765 CM091768.1 scf7180000183997 99.57 True fake: scaffold gap size wrong estimation (local) 1284946 1285677 260998 260267 CM091768.1 scf7180000183997 99.59 True fake: scaffold gap size wrong estimation (local) 1283332 1284214 262599 261717 CM091768.1 scf7180000183997 98.64 True local misassembly 1280747 1282378 265204 263573 CM091768.1 scf7180000183997 99.33 True local misassembly 1279567 1280234 266386 265719 CM091768.1 scf7180000183997 99.4 True indel: indel (<= 5bp) 1278758 1279566 267196 266388 CM091768.1 scf7180000183997 99.13 True fake: scaffold gap size wrong estimation (local) 1276684 1277659 269249 268274 CM091768.1 scf7180000183997 99.59 True local misassembly 1274072 1275967 271202 269307 CM091768.1 scf7180000183997 99.16 True indel: indel (<= 5bp) 1273515 1274071 271760 271204 CM091768.1 scf7180000183997 99.64 True local misassembly 1259296 1272832 285744 272415 CM091768.1 scf7180000183997 95.59 True local misassembly 1252366 1257899 291832 286281 CM091768.1 scf7180000183997 99.28 True fake: scaffold gap size wrong estimation (local) 1248114 1252182 296017 291947 CM091768.1 scf7180000183997 99.8 True fake: scaffold gap size wrong estimation (local) 972671 1247895 569489 296166 CM091768.1 scf7180000183997 98.32 True indel: indel (> 5bp) 950179 972464 591992 569704 CM091768.1 scf7180000183997 99.04 True fake: scaffold gap size wrong estimation (local) 917468 949599 624066 592243 CM091768.1 scf7180000183997 98.05 True fake: scaffold gap size wrong estimation (local) 888146 917175 653152 624179 CM091768.1 scf7180000183997 99.16 True CONTIG scf7180000183997 653152 correct 13155306 13156022 708 1 CM091751.1 scf7180000183998 98.7 True fake: scaffold gap size wrong estimation (local) 13152336 13154532 3822 1617 CM091751.1 scf7180000183998 99.72 True fake: scaffold gap size wrong estimation (local) 13143861 13152117 12258 3992 CM091751.1 scf7180000183998 99.66 True indel: indel (> 5bp) 13101320 13143689 54855 12410 CM091751.1 scf7180000183998 98.62 True fake: scaffold gap size wrong estimation (local) 13090619 13100885 65419 55134 CM091751.1 scf7180000183998 99.02 True fake: scaffold gap size wrong estimation (local) 13076519 13090219 79055 65559 CM091751.1 scf7180000183998 97.7 True relocation, inconsistency = 24576 13000589 13051942 130383 79056 CM091751.1 scf7180000183998 98.93 True fake: scaffold gap size wrong estimation (local) 12997515 12998114 132344 131745 CM091751.1 scf7180000183998 99.83 True indel: indel (<= 5bp) 12995193 12997514 134667 132346 CM091751.1 scf7180000183998 99.7 True indel: indel (<= 5bp) 12994206 12995192 135655 134669 CM091751.1 scf7180000183998 99.8 True indel: indel (<= 5bp) 12992910 12994073 136954 135791 CM091751.1 scf7180000183998 99.57 True local misassembly 12991128 12992370 138741 137499 CM091751.1 scf7180000183998 99.84 True indel: indel (<= 5bp) 12988722 12990648 141146 139220 CM091751.1 scf7180000183998 99.84 True indel: indel (<= 5bp) 12987296 12988349 142571 141518 CM091751.1 scf7180000183998 99.72 True indel: indel (<= 5bp) 12984646 12987295 145222 142573 CM091751.1 scf7180000183998 99.74 True indel: indel (<= 5bp) 12983898 12984574 145974 145298 CM091751.1 scf7180000183998 99.85 True local misassembly 12982599 12983211 147326 146714 CM091751.1 scf7180000183998 100.0 True indel: indel (> 5bp) 12981571 12982458 148381 147494 CM091751.1 scf7180000183998 100.0 True fake: scaffold gap size wrong estimation (local) 12979201 12979812 150419 149808 CM091751.1 scf7180000183998 100.0 True local misassembly 12975131 12978213 154554 151474 CM091751.1 scf7180000183998 99.35 True fake: scaffold gap size wrong estimation (local) 12971275 12974522 158005 154748 CM091751.1 scf7180000183998 98.99 True fake: scaffold gap size wrong estimation (local) 12963518 12971159 165747 158090 CM091751.1 scf7180000183998 98.96 True fake: scaffold gap size wrong estimation (local) 12944070 12963290 185173 165967 CM091751.1 scf7180000183998 99.18 True CONTIG scf7180000183998 185230 misassembled 10937232 10987225 620 49841 CM091756.1 scf7180000183999 95.74 True fake: scaffold gap size wrong estimation (local) 10987395 10992532 50073 55241 CM091756.1 scf7180000183999 98.78 True fake: scaffold gap size wrong estimation (local) 10992691 10996570 55349 59236 CM091756.1 scf7180000183999 98.64 True fake: scaffold gap size wrong estimation (local) 10996896 10997499 59317 59920 CM091756.1 scf7180000183999 99.67 True indel: indel (> 5bp) 10997716 10998675 60145 61104 CM091756.1 scf7180000183999 99.69 True indel: indel (<= 5bp) 10998676 10999475 61107 61906 CM091756.1 scf7180000183999 99.5 True indel: indel (> 5bp) 10999550 11000451 61995 62896 CM091756.1 scf7180000183999 98.78 True indel: indel (<= 5bp) 11000452 11001570 62898 64016 CM091756.1 scf7180000183999 99.46 True fake: scaffold gap size wrong estimation (local) 11006530 11007369 67539 68378 CM091756.1 scf7180000183999 98.81 True indel: indel (<= 5bp) 11007370 11007932 68381 68943 CM091756.1 scf7180000183999 98.4 True indel: indel (<= 5bp) 11007933 11008710 68945 69722 CM091756.1 scf7180000183999 99.49 True indel: indel (<= 5bp) 11009041 11009646 70055 70660 CM091756.1 scf7180000183999 99.34 True fake: scaffold gap size wrong estimation (local) 11011896 11012550 72168 72822 CM091756.1 scf7180000183999 99.39 True indel: indel (> 5bp) 11012551 11013110 72841 73400 CM091756.1 scf7180000183999 98.57 True indel: indel (<= 5bp) 11013184 11013898 73477 74191 CM091756.1 scf7180000183999 99.3 True fake: scaffold gap size wrong estimation (local) 11014517 11015392 74783 75668 CM091756.1 scf7180000183999 96.73 True local misassembly 11016974 11017566 77167 77759 CM091756.1 scf7180000183999 99.83 True indel: indel (<= 5bp) 11017567 11019066 77761 79260 CM091756.1 scf7180000183999 99.27 True local misassembly 11020200 11021922 79562 81284 CM091756.1 scf7180000183999 99.13 True indel: indel (<= 5bp) 11021923 11022674 81287 82038 CM091756.1 scf7180000183999 99.73 True fake: scaffold gap size wrong estimation (local) 11025631 11026639 85428 86436 CM091756.1 scf7180000183999 99.21 True local misassembly 11027250 11028354 86824 87928 CM091756.1 scf7180000183999 99.46 True local misassembly 11029501 11030105 89085 89689 CM091756.1 scf7180000183999 97.85 True local misassembly 11030844 11031411 89690 90257 CM091756.1 scf7180000183999 98.94 True indel: indel (<= 5bp) 11031820 11032354 90670 91204 CM091756.1 scf7180000183999 99.63 True local misassembly 11033559 11034912 92433 93786 CM091756.1 scf7180000183999 99.41 True local misassembly 11036393 11037191 95282 96080 CM091756.1 scf7180000183999 99.25 True fake: scaffold gap size wrong estimation (local) 11038654 11040108 97548 99005 CM091756.1 scf7180000183999 97.66 True fake: scaffold gap size wrong estimation (local) 11041064 11072042 99542 129526 CM091756.1 scf7180000183999 95.71 True fake: scaffold gap size wrong estimation (local) 11072424 11079924 130088 137584 CM091756.1 scf7180000183999 99.08 True fake: scaffold gap size wrong estimation (local) 11080301 11153769 138204 209630 CM091756.1 scf7180000183999 95.14 True fake: not a misassembly (possible transposable element) 15563911 15564767 210505 209651 CM091754.1 scf7180000183999 99.53 True fake: not a misassembly (possible transposable element) 11153711 11155362 210565 212221 CM091756.1 scf7180000183999 99.03 True translocation, scaffold gap is present 15527682 15563382 247443 212259 CM091754.1 scf7180000183999 97.98 True fake: scaffold gap size wrong estimation (local) 15484866 15527274 288599 247589 CM091754.1 scf7180000183999 96.23 True CONTIG scf7180000183999 288599 misassembled 2583791 2585553 1758 1 CM091752.1 scf7180000184000 99.39 True translocation 8703946 8748858 1759 46684 CM091764.1 scf7180000184000 99.77 True fake: scaffold gap size wrong estimation (local) 8749053 8754013 46779 51741 CM091764.1 scf7180000184000 99.88 True relocation, scaffold gap is present, inconsistency = 1249795 10003829 10167086 51762 214909 CM091764.1 scf7180000184000 99.49 True fake: scaffold gap size wrong estimation (local) 10167456 10189894 215246 237714 CM091764.1 scf7180000184000 99.21 True indel: indel (> 5bp) 10190000 10346963 237828 395043 CM091764.1 scf7180000184000 99.26 True indel: stretch of mismatches 10347146 10397249 395226 445381 CM091764.1 scf7180000184000 99.25 True indel: indel (<= 5bp) 10397285 10961371 445416 1007644 CM091764.1 scf7180000184000 99.01 True fake: scaffold gap size wrong estimation (local) 10961969 10976523 1007864 1022401 CM091764.1 scf7180000184000 99.37 True fake: scaffold gap size wrong estimation (local) 10976702 10986187 1022526 1031886 CM091764.1 scf7180000184000 98.13 True CONTIG scf7180000184000 1031913 misassembled 5418689 5420248 1 1562 CM091761.1 scf7180000184001 99.87 True translocation 5560823 5577744 18508 1563 CM091763.1 scf7180000184001 99.19 True fake: scaffold gap size wrong estimation (local) 5551096 5560592 28181 18690 CM091763.1 scf7180000184001 99.57 True fake: scaffold gap size wrong estimation (local) 5519856 5550956 59390 28312 CM091763.1 scf7180000184001 99.84 True fake: scaffold gap size wrong estimation (local) 5333619 5519625 243774 59612 CM091763.1 scf7180000184001 98.41 True local misassembly 5329153 5333343 248139 243948 CM091763.1 scf7180000184001 99.02 True fake: scaffold gap size wrong estimation (local) 5293327 5328857 283651 248441 CM091763.1 scf7180000184001 97.56 True fake: scaffold gap size wrong estimation (local) 5231872 5292458 343884 284319 CM091763.1 scf7180000184001 97.3 True fake: scaffold gap size wrong estimation (local) 5052039 5231863 523690 343964 CM091763.1 scf7180000184001 99.66 True fake: scaffold gap size wrong estimation (local) 5046067 5051854 529507 523875 CM091763.1 scf7180000184001 96.11 True fake: scaffold gap size wrong estimation (local) 4993016 5045597 582450 529904 CM091763.1 scf7180000184001 99.27 True fake: scaffold gap size wrong estimation (local) 4990665 4992806 584772 582707 CM091763.1 scf7180000184001 95.02 True fake: scaffold gap size wrong estimation (local) 4969459 4990093 605438 585060 CM091763.1 scf7180000184001 97.67 True fake: scaffold gap size wrong estimation (local) 4966717 4969199 608195 605712 CM091763.1 scf7180000184001 99.56 True fake: scaffold gap size wrong estimation (local) 4965393 4966310 609754 608837 CM091763.1 scf7180000184001 99.78 True CONTIG scf7180000184001 609754 misassembled 12612669 12649824 11 37353 CM091755.1 scf7180000184002 98.77 True fake: scaffold gap size wrong estimation (local) 12650091 12669249 37626 56441 CM091755.1 scf7180000184002 97.26 True fake: scaffold gap size wrong estimation (local) 12669744 12725728 57354 113360 CM091755.1 scf7180000184002 98.9 True CONTIG scf7180000184002 113441 correct 2295913 2306290 1 10323 CM091757.1 scf7180000184003 99.03 True fake: scaffold gap size wrong estimation (local) 2306437 2314931 10468 18962 CM091757.1 scf7180000184003 98.55 True fake: scaffold gap size wrong estimation (local) 2315587 2340840 19685 44979 CM091757.1 scf7180000184003 99.16 True local misassembly 2341036 2392982 45053 95414 CM091757.1 scf7180000184003 96.3 True indel: indel (> 5bp) 2393016 2510841 95442 210975 CM091757.1 scf7180000184003 97.32 True fake: scaffold gap size wrong estimation (local) 2511696 2535365 211515 235216 CM091757.1 scf7180000184003 99.35 True fake: scaffold gap size wrong estimation (local) 2535759 2591404 235386 290992 CM091757.1 scf7180000184003 98.74 True fake: scaffold gap size wrong estimation (local) 2591610 2596930 291214 296541 CM091757.1 scf7180000184003 99.51 True fake: scaffold gap size wrong estimation (local) 2597021 2636501 296617 336111 CM091757.1 scf7180000184003 99.62 True fake: scaffold gap size wrong estimation (local) 2637436 2704592 336610 403853 CM091757.1 scf7180000184003 99.35 True fake: scaffold gap size wrong estimation (local) 2705062 2727037 404263 426274 CM091757.1 scf7180000184003 95.59 True fake: scaffold gap size wrong estimation (local) 2727355 2760125 426547 458547 CM091757.1 scf7180000184003 96.65 True local misassembly 2760530 2818363 458857 516541 CM091757.1 scf7180000184003 98.31 True fake: scaffold gap size wrong estimation (local) 2818489 2856167 516661 554275 CM091757.1 scf7180000184003 98.66 True indel: indel (> 5bp) 2856202 2862449 554329 560631 CM091757.1 scf7180000184003 98.89 True fake: scaffold gap size wrong estimation (local) 2862852 2916659 560763 615201 CM091757.1 scf7180000184003 97.49 True fake: scaffold gap size wrong estimation (local) 2917168 2962125 615568 660541 CM091757.1 scf7180000184003 99.5 True fake: scaffold gap size wrong estimation (local) 2962320 3002026 660721 700494 CM091757.1 scf7180000184003 99.4 True fake: scaffold gap size wrong estimation (local) 3002228 3059739 700677 758309 CM091757.1 scf7180000184003 98.33 True CONTIG scf7180000184003 758795 correct 10314153 10825912 512198 31 CM091754.1 scf7180000184004 99.4 True fake: not a misassembly (possible transposable element) 11637421 11638684 513483 512219 CM091754.1 scf7180000184004 99.92 True fake: not a misassembly (possible transposable element) 10039324 10314920 788173 513484 CM091754.1 scf7180000184004 99.2 True fake: scaffold gap size wrong estimation (local) 9991766 10039811 836273 788194 CM091754.1 scf7180000184004 99.23 True fake: scaffold gap size wrong estimation (local) 9986559 9991447 841322 836453 CM091754.1 scf7180000184004 99.16 True indel: indel (> 5bp) 9959094 9986462 868752 841439 CM091754.1 scf7180000184004 99.03 True fake: scaffold gap size wrong estimation (local) 9935839 9958888 891967 869223 CM091754.1 scf7180000184004 98.06 True fake: scaffold gap size wrong estimation (local) 9889259 9935711 938790 892047 CM091754.1 scf7180000184004 99.17 True fake: scaffold gap size wrong estimation (local) 9823277 9889171 1004826 938993 CM091754.1 scf7180000184004 99.26 True fake: scaffold gap size wrong estimation (local) 9617477 9823069 1210495 1005113 CM091754.1 scf7180000184004 99.0 True fake: scaffold gap size wrong estimation (local) 9580649 9616861 1246810 1210615 CM091754.1 scf7180000184004 99.19 True indel: indel (> 5bp) 9407800 9580556 1419794 1246964 CM091754.1 scf7180000184004 99.27 True indel: indel (> 5bp) 9385722 9407619 1441766 1419918 CM091754.1 scf7180000184004 99.21 True indel: indel (> 5bp) 9136939 9385659 1690725 1441810 CM091754.1 scf7180000184004 99.31 True fake: scaffold gap size wrong estimation (local) 9135642 9136281 1691967 1691328 CM091754.1 scf7180000184004 99.84 True CONTIG scf7180000184004 1691967 correct 3691144 3692374 1248 18 CM091752.1 scf7180000184005 99.68 True fake: scaffold gap size wrong estimation (local) 3685707 3690209 6284 1964 CM091752.1 scf7180000184005 95.48 True fake: scaffold gap size wrong estimation (local) 3677658 3685481 14238 6449 CM091752.1 scf7180000184005 99.03 True fake: scaffold gap size wrong estimation (local) 3676761 3677763 15731 14729 CM091752.1 scf7180000184005 99.7 True fake: scaffold gap size wrong estimation (local) 3630622 3675408 62249 17087 CM091752.1 scf7180000184005 97.93 True fake: not a misassembly (possible transposable element) 1491728 1492542 62250 63064 CM091764.1 scf7180000184005 100.0 True fake: not a misassembly (possible transposable element) 3604610 3630319 88912 63085 CM091752.1 scf7180000184005 99.07 True fake: scaffold gap size wrong estimation (local) 3591310 3604212 102378 89277 CM091752.1 scf7180000184005 95.33 True fake: scaffold gap size wrong estimation (local) 3567548 3590627 125041 102691 CM091752.1 scf7180000184005 96.29 True fake: scaffold gap size wrong estimation (local) 3565759 3566381 126418 125797 CM091752.1 scf7180000184005 99.52 True fake: scaffold gap size wrong estimation (local) 3554356 3565321 137625 126651 CM091752.1 scf7180000184005 99.79 True fake: not a misassembly (possible transposable element) 12034787 12035815 137626 138652 CM091762.1 scf7180000184005 99.72 True fake: not a misassembly (possible transposable element) 3484222 3552705 207143 138685 CM091752.1 scf7180000184005 99.29 True fake: scaffold gap size wrong estimation (local) 3481425 3483388 209747 207797 CM091752.1 scf7180000184005 98.93 True CONTIG scf7180000184005 209747 correct 15236785 15239530 2745 6 CM091751.1 scf7180000184006 98.94 True fake: scaffold gap size wrong estimation (local) 15131793 15236542 106445 2960 CM091751.1 scf7180000184006 98.26 True fake: not a misassembly (possible transposable element) 15984721 15985985 106467 107731 CM091757.1 scf7180000184006 100.0 True fake: not a misassembly (possible transposable element) 15107281 15131656 131864 107825 CM091751.1 scf7180000184006 97.19 True fake: scaffold gap size wrong estimation (local) 15065914 15106574 172942 132426 CM091751.1 scf7180000184006 98.97 True fake: scaffold gap size wrong estimation (local) 15038807 15065016 199489 173323 CM091751.1 scf7180000184006 99.07 True fake: not a misassembly (possible transposable element) 11336392 11337611 200746 199527 CM091761.1 scf7180000184006 99.92 True fake: not a misassembly (possible transposable element) 15033922 15038711 205649 200841 CM091751.1 scf7180000184006 99.38 True fake: scaffold gap size wrong estimation (local) 15015480 15033582 224117 205968 CM091751.1 scf7180000184006 99.45 True fake: scaffold gap size wrong estimation (local) 15010085 15015149 229284 224198 CM091751.1 scf7180000184006 98.66 True fake: scaffold gap size wrong estimation (local) 14982220 15009844 257546 229342 CM091751.1 scf7180000184006 97.65 True fake: scaffold gap size wrong estimation (local) 14968940 14982018 270395 257737 CM091751.1 scf7180000184006 96.13 True translocation 11494236 11494764 270924 270396 CM091762.1 scf7180000184006 99.82 True CONTIG scf7180000184006 270924 misassembled 9570105 9573482 3375 1 CM091762.1 scf7180000184007 99.17 True local misassembly 9574273 9576568 5689 3396 CM091762.1 scf7180000184007 98.56 True local misassembly 9567998 9568513 6228 5713 CM091762.1 scf7180000184007 98.84 True fake: scaffold gap size wrong estimation (local) 9565942 9566508 7259 6693 CM091762.1 scf7180000184007 99.29 True indel: indel (<= 5bp) 9564850 9565941 8352 7261 CM091762.1 scf7180000184007 99.54 True indel: indel (<= 5bp) 9563324 9564849 9879 8354 CM091762.1 scf7180000184007 99.8 True indel: indel (> 5bp) 9562729 9563323 10480 9886 CM091762.1 scf7180000184007 99.83 True fake: scaffold gap size wrong estimation (local) 9521910 9560833 50277 12104 CM091762.1 scf7180000184007 96.95 True CONTIG scf7180000184007 50292 correct 12657487 12659823 1 2335 CM091757.1 scf7180000184008 99.91 True fake: scaffold gap size wrong estimation (local) 12660493 12762897 2440 104935 CM091757.1 scf7180000184008 99.42 True indel: indel (> 5bp) 12762928 12892978 104959 234871 CM091757.1 scf7180000184008 99.31 True fake: scaffold gap size wrong estimation (local) 12893789 13014077 235631 355595 CM091757.1 scf7180000184008 99.51 True fake: scaffold gap size wrong estimation (local) 13014345 13071325 355741 412793 CM091757.1 scf7180000184008 99.85 True fake: scaffold gap size wrong estimation (local) 13071818 13072758 413513 414453 CM091757.1 scf7180000184008 99.89 True CONTIG scf7180000184008 414458 correct 8497593 8567237 70395 855 CM091761.1 scf7180000184009 99.31 True fake: scaffold gap size wrong estimation (local) 8470385 8496903 97342 70822 CM091761.1 scf7180000184009 99.43 True local misassembly 8394729 8470236 172937 97366 CM091761.1 scf7180000184009 99.47 True fake: scaffold gap size wrong estimation (local) 8328642 8394494 239382 173473 CM091761.1 scf7180000184009 99.48 True fake: scaffold gap size wrong estimation (local) 7956739 8327210 610963 240194 CM091761.1 scf7180000184009 99.53 True indel: indel (<= 5bp) 7811742 7956675 756097 611029 CM091761.1 scf7180000184009 99.58 True indel: indel (> 5bp) 7645032 7811733 922730 756099 CM091761.1 scf7180000184009 99.48 True indel: indel (<= 5bp) 7625443 7644976 942388 922791 CM091761.1 scf7180000184009 99.44 True fake: scaffold gap size wrong estimation (local) 7369878 7625521 1197697 942960 CM091761.1 scf7180000184009 99.25 True fake: scaffold gap size wrong estimation (local) 7367897 7369796 1199664 1197764 CM091761.1 scf7180000184009 99.47 True indel: indel (> 5bp) 7262629 7367821 1304379 1199733 CM091761.1 scf7180000184009 98.82 True indel: indel (> 5bp) 7218822 7262425 1348112 1304549 CM091761.1 scf7180000184009 99.25 True fake: scaffold gap size wrong estimation (local) 7119282 7218212 1447484 1348484 CM091761.1 scf7180000184009 99.68 True translocation 173075 174304 1448721 1447492 CM091757.1 scf7180000184009 99.92 True translocation, scaffold gap is present 14403441 14404988 1450947 1449393 CM091754.1 scf7180000184009 99.36 True translocation, scaffold gap is present 6928409 7118269 1640887 1450968 CM091761.1 scf7180000184009 99.67 True fake: scaffold gap size wrong estimation (local) 6892393 6928207 1677222 1641400 CM091761.1 scf7180000184009 99.78 True indel: indel (> 5bp) 6335145 6892292 2234746 1677348 CM091761.1 scf7180000184009 99.52 True CONTIG scf7180000184009 2234746 misassembled 4730043 4771332 41275 1 CM091767.1 scf7180000184010 98.9 True fake: scaffold gap size wrong estimation (local) 4723407 4730181 48349 41670 CM091767.1 scf7180000184010 98.27 True fake: scaffold gap size wrong estimation (local) 4695888 4722734 76047 49168 CM091767.1 scf7180000184010 98.97 True fake: scaffold gap size wrong estimation (local) 4633614 4695567 137021 76276 CM091767.1 scf7180000184010 97.41 True fake: scaffold gap size wrong estimation (local) 4470332 4633375 299374 137291 CM091767.1 scf7180000184010 98.64 True fake: scaffold gap size wrong estimation (local) 4426945 4469958 342058 299511 CM091767.1 scf7180000184010 97.29 True fake: scaffold gap size wrong estimation (local) 4425058 4426414 343623 342265 CM091767.1 scf7180000184010 99.48 True indel: indel (> 5bp) 4423940 4424913 344754 343781 CM091767.1 scf7180000184010 99.69 True indel: stretch of mismatches 4422700 4423802 345994 344892 CM091767.1 scf7180000184010 99.27 True indel: indel (> 5bp) 4421915 4422699 346787 346003 CM091767.1 scf7180000184010 99.24 True fake: scaffold gap size wrong estimation (local) 4420732 4421914 348598 347416 CM091767.1 scf7180000184010 99.49 True indel: indel (> 5bp) 4394516 4420248 375234 349075 CM091767.1 scf7180000184010 97.88 True fake: not a misassembly (possible transposable element) 6404622 6405308 375921 375235 CM091760.1 scf7180000184010 99.57 True fake: not a misassembly (possible transposable element) 4342100 4394368 428281 375942 CM091767.1 scf7180000184010 98.83 True indel: indel (> 5bp) 4317617 4341910 452766 428446 CM091767.1 scf7180000184010 99.36 True fake: scaffold gap size wrong estimation (local) 4239797 4317491 530616 452955 CM091767.1 scf7180000184010 99.43 True fake: scaffold gap size wrong estimation (local) 4147001 4239363 623225 530927 CM091767.1 scf7180000184010 99.63 True indel: indel (> 5bp) 4117620 4146839 652593 623350 CM091767.1 scf7180000184010 99.49 True fake: scaffold gap size wrong estimation (local) 4087765 4117217 682168 652697 CM091767.1 scf7180000184010 99.65 True indel: indel (> 5bp) 4012862 4087668 754453 682292 CM091767.1 scf7180000184010 95.35 True fake: scaffold gap size wrong estimation (local) 4007309 4012607 759885 754619 CM091767.1 scf7180000184010 98.05 True indel: stretch of mismatches 3985346 4007262 782090 759932 CM091767.1 scf7180000184010 98.08 True fake: scaffold gap size wrong estimation (local) 3984504 3985240 783285 782549 CM091767.1 scf7180000184010 99.86 True CONTIG scf7180000184010 783289 correct 9576588 9579706 1 3122 CM091762.1 scf7180000184011 99.36 True indel: indel (> 5bp) 9580013 9624780 3420 48225 CM091762.1 scf7180000184011 99.54 True fake: scaffold gap size wrong estimation (local) 9625402 9725631 48510 148750 CM091762.1 scf7180000184011 99.4 True fake: scaffold gap size wrong estimation (local) 9726258 9774844 149169 197753 CM091762.1 scf7180000184011 99.43 True indel: indel (> 5bp) 9774903 9860292 197863 283858 CM091762.1 scf7180000184011 98.8 True fake: scaffold gap size wrong estimation (local) 9860568 9874485 283926 297932 CM091762.1 scf7180000184011 98.8 True fake: scaffold gap size wrong estimation (local) 9874975 9988741 298133 411864 CM091762.1 scf7180000184011 99.15 True local misassembly 9989460 10017716 412633 440905 CM091762.1 scf7180000184011 99.48 True indel: indel (> 5bp) 10017765 10026434 440967 449640 CM091762.1 scf7180000184011 98.97 True fake: scaffold gap size wrong estimation (local) 10026520 10126921 449839 550509 CM091762.1 scf7180000184011 98.71 True fake: scaffold gap size wrong estimation (local) 10126982 10253766 550585 677165 CM091762.1 scf7180000184011 99.12 True fake: scaffold gap size wrong estimation (local) 10254506 10268627 677585 691719 CM091762.1 scf7180000184011 99.01 True indel: stretch of mismatches 10268628 10303267 691720 726390 CM091762.1 scf7180000184011 99.27 True CONTIG scf7180000184011 726390 correct CONTIG scf7180000184012 49634 unaligned 4251955 4257048 2083 7175 CM091754.1 scf7180000184013 99.96 True CONTIG scf7180000184013 7175 correct CONTIG scf7180000184014 119102 unaligned 13100539 13133804 70 33333 CM091758.1 scf7180000184015 99.91 True fake: scaffold gap size wrong estimation (local) 13135280 13211674 34428 110404 CM091758.1 scf7180000184015 99.23 True fake: scaffold gap size wrong estimation (local) 13212123 13233598 110538 131819 CM091758.1 scf7180000184015 98.93 True fake: scaffold gap size wrong estimation (local) 13233775 13241460 131954 139593 CM091758.1 scf7180000184015 99.26 True fake: scaffold gap size wrong estimation (local) 13245572 13246397 140924 141749 CM091758.1 scf7180000184015 99.88 True indel: indel (> 5bp) 13246480 13250446 141797 145763 CM091758.1 scf7180000184015 99.85 True local misassembly 13254137 13255843 145764 147470 CM091758.1 scf7180000184015 99.94 True indel: indel (<= 5bp) 13255844 13256733 147472 148361 CM091758.1 scf7180000184015 99.66 True indel: indel (<= 5bp) 13256902 13260017 148529 151644 CM091758.1 scf7180000184015 99.94 True indel: indel (<= 5bp) 13260018 13263986 151648 155616 CM091758.1 scf7180000184015 99.85 True indel: indel (<= 5bp) 13263987 13265170 155618 156801 CM091758.1 scf7180000184015 100.0 True indel: indel (<= 5bp) 13265171 13266489 156803 158121 CM091758.1 scf7180000184015 99.92 True indel: indel (<= 5bp) 13266491 13268483 158122 160114 CM091758.1 scf7180000184015 99.85 True indel: indel (<= 5bp) 13268485 13272994 160115 164624 CM091758.1 scf7180000184015 99.98 True indel: indel (<= 5bp) 13272995 13275229 164627 166861 CM091758.1 scf7180000184015 99.91 True indel: indel (<= 5bp) 13275231 13276088 166862 167719 CM091758.1 scf7180000184015 100.0 True fake: scaffold gap size wrong estimation (local) 13277388 13278653 168982 170247 CM091758.1 scf7180000184015 100.0 True indel: indel (<= 5bp) 13278654 13281872 170249 173467 CM091758.1 scf7180000184015 99.97 True indel: indel (<= 5bp) 13281873 13285981 173469 177577 CM091758.1 scf7180000184015 100.0 True indel: indel (<= 5bp) 13285983 13287266 177578 178861 CM091758.1 scf7180000184015 100.0 True indel: indel (<= 5bp) 13287269 13289251 178862 180844 CM091758.1 scf7180000184015 99.95 True indel: indel (<= 5bp) 13289252 13290153 180846 181747 CM091758.1 scf7180000184015 99.89 True indel: indel (<= 5bp) 13290549 13292877 182139 184467 CM091758.1 scf7180000184015 100.0 True CONTIG scf7180000184015 184467 correct 8258269 8324767 66570 1 CM091753.1 scf7180000184016 99.41 True fake: scaffold gap size wrong estimation (local) 8209022 8258157 115813 66667 CM091753.1 scf7180000184016 99.64 True fake: scaffold gap size wrong estimation (local) 8149734 8208919 175088 115904 CM091753.1 scf7180000184016 99.51 True fake: scaffold gap size wrong estimation (local) 8116899 8149694 207900 175140 CM091753.1 scf7180000184016 99.4 True fake: scaffold gap size wrong estimation (local) 8100756 8116686 224021 208114 CM091753.1 scf7180000184016 99.28 True fake: scaffold gap size wrong estimation (local) 8032144 8100497 292916 224393 CM091753.1 scf7180000184016 99.17 True indel: indel (<= 5bp) 7950868 8032097 374131 292962 CM091753.1 scf7180000184016 99.35 True fake: scaffold gap size wrong estimation (local) 7947951 7950621 376936 374267 CM091753.1 scf7180000184016 99.89 True CONTIG scf7180000184016 376977 correct 18777251 18778188 1026 89 CM091751.1 scf7180000184017 99.04 True indel: indel (<= 5bp) 18774438 18776977 3844 1295 CM091751.1 scf7180000184017 98.36 True fake: scaffold gap size wrong estimation (local) 18772034 18773050 5682 4687 CM091751.1 scf7180000184017 95.32 True local misassembly 18770120 18771084 7515 6551 CM091751.1 scf7180000184017 99.69 True fake: scaffold gap size wrong estimation (local) 18757553 18768953 19641 8585 CM091751.1 scf7180000184017 95.08 True fake: scaffold gap size wrong estimation (local) 18755583 18756362 21219 20440 CM091751.1 scf7180000184017 99.36 True indel: indel (> 5bp) 18754398 18755426 22398 21370 CM091751.1 scf7180000184017 98.93 True local misassembly 18751525 18752898 24303 22930 CM091751.1 scf7180000184017 99.05 True fake: scaffold gap size wrong estimation (local) 18749423 18750364 26515 25574 CM091751.1 scf7180000184017 98.94 True fake: scaffold gap size wrong estimation (local) 18740204 18748023 35100 27408 CM091751.1 scf7180000184017 96.76 True fake: scaffold gap size wrong estimation (local) 18737019 18740071 38259 35210 CM091751.1 scf7180000184017 98.63 True fake: scaffold gap size wrong estimation (local) 18700639 18736859 73923 38412 CM091751.1 scf7180000184017 96.94 True fake: scaffold gap size wrong estimation (local) 18695789 18700507 78762 74032 CM091751.1 scf7180000184017 98.49 True indel: indel (> 5bp) 18688855 18695661 85715 78850 CM091751.1 scf7180000184017 97.88 True fake: scaffold gap size wrong estimation (local) 18687521 18688597 87001 85925 CM091751.1 scf7180000184017 98.89 True local misassembly 18685639 18687217 88666 87088 CM091751.1 scf7180000184017 98.92 True local misassembly 18684101 18685437 90058 88722 CM091751.1 scf7180000184017 98.65 True indel: indel (<= 5bp) 18683159 18683799 91003 90363 CM091751.1 scf7180000184017 99.38 True indel: indel (> 5bp) 18681784 18683158 92384 91010 CM091751.1 scf7180000184017 98.84 True local misassembly 18678845 18680073 93613 92385 CM091751.1 scf7180000184017 98.94 True fake: scaffold gap size wrong estimation (local) 18647847 18678182 124241 94207 CM091751.1 scf7180000184017 97.88 True fake: scaffold gap size wrong estimation (local) 18636523 18647537 135290 124408 CM091751.1 scf7180000184017 97.64 True fake: scaffold gap size wrong estimation (local) 18634945 18635498 136771 136218 CM091751.1 scf7180000184017 98.74 True indel: indel (<= 5bp) 18633897 18634454 137821 137264 CM091751.1 scf7180000184017 99.64 True local misassembly 18630170 18631374 140904 139700 CM091751.1 scf7180000184017 98.92 True indel: stretch of mismatches 18629388 18630038 141686 141036 CM091751.1 scf7180000184017 99.39 True indel: indel (> 5bp) 18628274 18629085 142818 142007 CM091751.1 scf7180000184017 99.38 True indel: stretch of mismatches 18626678 18628185 144414 142907 CM091751.1 scf7180000184017 99.93 True local misassembly 18625157 18626156 145942 144943 CM091751.1 scf7180000184017 99.6 True fake: scaffold gap size wrong estimation (local) 18619168 18622904 151458 147726 CM091751.1 scf7180000184017 96.72 True fake: scaffold gap size wrong estimation (local) 18607221 18618947 163365 151637 CM091751.1 scf7180000184017 99.29 True CONTIG scf7180000184017 163365 correct 4389125 4389899 2 785 CM091754.1 scf7180000184018 99.87 True fake: not a misassembly (possible transposable element) 7233969 7236575 3410 806 CM091765.1 scf7180000184018 99.04 True fake: not a misassembly (possible transposable element) 4390968 4391857 3411 4300 CM091754.1 scf7180000184018 100.0 True fake: scaffold gap size wrong estimation (local) 4392703 4397027 5130 9448 CM091754.1 scf7180000184018 99.84 True fake: scaffold gap size wrong estimation (local) 4397844 4399649 9940 11745 CM091754.1 scf7180000184018 100.0 True indel: indel (<= 5bp) 4399650 4401774 11747 13871 CM091754.1 scf7180000184018 100.0 True fake: scaffold gap size wrong estimation (local) 4401877 4403411 14266 15800 CM091754.1 scf7180000184018 99.8 True local misassembly 4403723 4405222 15801 17300 CM091754.1 scf7180000184018 97.13 True indel: indel (<= 5bp) 4405223 4407971 17302 20050 CM091754.1 scf7180000184018 99.89 True fake: scaffold gap size wrong estimation (local) 4408607 4412121 20438 23952 CM091754.1 scf7180000184018 98.89 True indel: indel (<= 5bp) 4412122 4412933 23954 24765 CM091754.1 scf7180000184018 100.0 True indel: indel (> 5bp) 4412934 4415155 24774 26995 CM091754.1 scf7180000184018 99.46 True CONTIG scf7180000184018 26995 correct 16997041 16997746 3043 2337 CM091754.1 scf7180000184019 97.03 True fake: scaffold gap size wrong estimation (local) 16973320 16996943 27191 3608 CM091754.1 scf7180000184019 99.69 True fake: scaffold gap size wrong estimation (local) 16875621 16972914 124056 27457 CM091754.1 scf7180000184019 98.87 True fake: scaffold gap size wrong estimation (local) 16830434 16875491 169070 124127 CM091754.1 scf7180000184019 99.14 True fake: scaffold gap size wrong estimation (local) 16729692 16830291 269883 169196 CM091754.1 scf7180000184019 99.43 True CONTIG scf7180000184019 269883 correct CONTIG scf7180000184020 5070 unaligned 13517984 13520667 2684 1 CM091753.1 scf7180000184021 99.33 True fake: scaffold gap size wrong estimation (local) 13505445 13517514 14551 2864 CM091753.1 scf7180000184021 95.94 True fake: scaffold gap size wrong estimation (local) 13503991 13505307 16049 14708 CM091753.1 scf7180000184021 96.39 True indel: indel (<= 5bp) 13487488 13503892 32607 16153 CM091753.1 scf7180000184021 98.86 True fake: scaffold gap size wrong estimation (local) 13485641 13486292 34382 33731 CM091753.1 scf7180000184021 99.39 True indel: indel (<= 5bp) 13485055 13485640 34970 34385 CM091753.1 scf7180000184021 99.49 True fake: scaffold gap size wrong estimation (local) 13481968 13482832 38195 37331 CM091753.1 scf7180000184021 99.42 True indel: indel (<= 5bp) 13477217 13481966 42945 38196 CM091753.1 scf7180000184021 99.6 True fake: scaffold gap size wrong estimation (local) 13474548 13477216 45642 42974 CM091753.1 scf7180000184021 99.85 True indel: indel (<= 5bp) 13472789 13474547 47403 45645 CM091753.1 scf7180000184021 99.89 True indel: indel (<= 5bp) 13471974 13472786 48216 47404 CM091753.1 scf7180000184021 99.88 True local misassembly 13469929 13471059 50241 49111 CM091753.1 scf7180000184021 99.73 True indel: indel (<= 5bp) 13468955 13469697 51217 50475 CM091753.1 scf7180000184021 99.19 True fake: scaffold gap size wrong estimation (local) 13467147 13468302 52849 51694 CM091753.1 scf7180000184021 99.74 True fake: scaffold gap size wrong estimation (local) 13460567 13466935 59279 53046 CM091753.1 scf7180000184021 97.07 True fake: scaffold gap size wrong estimation (local) 13458952 13459824 60379 59507 CM091753.1 scf7180000184021 99.89 True indel: stretch of mismatches 13457978 13458601 61353 60730 CM091753.1 scf7180000184021 100.0 True indel: indel (<= 5bp) 13455918 13457977 63414 61355 CM091753.1 scf7180000184021 99.76 True indel: indel (<= 5bp) 13455356 13455917 63977 63416 CM091753.1 scf7180000184021 99.82 True fake: scaffold gap size wrong estimation (local) 13454118 13455301 65806 64623 CM091753.1 scf7180000184021 99.32 True indel: indel (<= 5bp) 13451180 13453744 68742 66178 CM091753.1 scf7180000184021 99.69 True fake: scaffold gap size wrong estimation (local) 13332841 13450469 187062 69423 CM091753.1 scf7180000184021 99.23 True fake: scaffold gap size wrong estimation (local) 13317785 13332618 201872 187247 CM091753.1 scf7180000184021 97.71 True fake: scaffold gap size wrong estimation (local) 13301022 13317598 218547 201931 CM091753.1 scf7180000184021 99.12 True fake: scaffold gap size wrong estimation (local) 13294121 13300843 225449 218721 CM091753.1 scf7180000184021 99.36 True fake: scaffold gap size wrong estimation (local) 13093286 13293896 425721 225637 CM091753.1 scf7180000184021 99.04 True fake: scaffold gap size wrong estimation (local) 13086111 13093098 432815 425912 CM091753.1 scf7180000184021 98.21 True indel: indel (> 5bp) 12937152 13086067 580033 432840 CM091753.1 scf7180000184021 98.05 True fake: scaffold gap size wrong estimation (local) 12908110 12931482 603444 580054 CM091753.1 scf7180000184021 99.42 True fake: scaffold gap size wrong estimation (local) 12905001 12907958 606420 603548 CM091753.1 scf7180000184021 96.26 True fake: scaffold gap size wrong estimation (local) 12904184 12904903 607320 606601 CM091753.1 scf7180000184021 99.58 True fake: scaffold gap size wrong estimation (local) 12894987 12903927 616330 607378 CM091753.1 scf7180000184021 98.9 True fake: scaffold gap size wrong estimation (local) 12802574 12894690 708241 616569 CM091753.1 scf7180000184021 98.85 True CONTIG scf7180000184021 708241 correct CONTIG scf7180000184022 1369 unaligned 3900132 3962842 62493 1 CM091753.1 scf7180000184023 99.6 True local misassembly 3869619 3899569 93081 63230 CM091753.1 scf7180000184023 99.31 True fake: scaffold gap size wrong estimation (local) 3858851 3869387 103859 93314 CM091753.1 scf7180000184023 99.22 True indel: indel (> 5bp) 3744543 3858774 218004 103958 CM091753.1 scf7180000184023 99.23 True indel: indel (> 5bp) 3726663 3744427 235782 218050 CM091753.1 scf7180000184023 99.45 True fake: scaffold gap size wrong estimation (local) 3639024 3725818 323131 236366 CM091753.1 scf7180000184023 99.65 True fake: scaffold gap size wrong estimation (local) 3622148 3638640 339646 323283 CM091753.1 scf7180000184023 99.02 True fake: scaffold gap size wrong estimation (local) 3614992 3621238 346020 339775 CM091753.1 scf7180000184023 99.74 True fake: scaffold gap size wrong estimation (local) 3613204 3614107 347207 346304 CM091753.1 scf7180000184023 99.89 True fake: scaffold gap size wrong estimation (local) 3612064 3612808 348398 347654 CM091753.1 scf7180000184023 99.19 True indel: indel (> 5bp) 3609606 3611660 350881 348827 CM091753.1 scf7180000184023 99.85 True indel: indel (> 5bp) 3608464 3609365 352029 351128 CM091753.1 scf7180000184023 98.23 True indel: indel (> 5bp) 3607822 3608463 352679 352038 CM091753.1 scf7180000184023 99.84 True indel: indel (<= 5bp) 3606379 3607821 354123 352681 CM091753.1 scf7180000184023 99.86 True indel: indel (<= 5bp) 3605487 3606076 355017 354428 CM091753.1 scf7180000184023 99.83 True indel: indel (<= 5bp) 3604818 3605486 355687 355019 CM091753.1 scf7180000184023 96.56 True indel: indel (> 5bp) 3601853 3604765 358600 355688 CM091753.1 scf7180000184023 99.79 True indel: indel (<= 5bp) 3599753 3601852 360702 358603 CM091753.1 scf7180000184023 99.67 True indel: indel (> 5bp) 3598827 3599712 361588 360703 CM091753.1 scf7180000184023 99.66 True indel: indel (<= 5bp) 3594777 3598825 365637 361589 CM091753.1 scf7180000184023 99.8 True indel: indel (<= 5bp) 3594182 3594776 366233 365639 CM091753.1 scf7180000184023 96.13 True fake: scaffold gap size wrong estimation (local) 3583261 3592493 375800 366568 CM091753.1 scf7180000184023 99.86 True CONTIG scf7180000184023 375800 correct 16663463 16665784 3961 1640 CM091756.1 scf7180000184024 99.96 True fake: scaffold gap size wrong estimation (local) 16384721 16663269 283346 4035 CM091756.1 scf7180000184024 99.46 True fake: scaffold gap size wrong estimation (local) 16352715 16384597 314958 283438 CM091756.1 scf7180000184024 98.6 True fake: scaffold gap size wrong estimation (local) 16352304 16353022 315914 315196 CM091756.1 scf7180000184024 100.0 True fake: scaffold gap size wrong estimation (local) 16348516 16349847 319400 318065 CM091756.1 scf7180000184024 99.55 True translocation, scaffold gap is present 10212543 10219744 319443 326645 CM091765.1 scf7180000184024 99.92 True CONTIG scf7180000184024 329407 misassembled 2364811 2375224 1 10021 CM091751.1 scf7180000184025 95.24 True fake: scaffold gap size wrong estimation (local) 2377108 2377811 11412 12115 CM091751.1 scf7180000184025 99.86 True fake: scaffold gap size wrong estimation (local) 2378838 2381245 13027 15434 CM091751.1 scf7180000184025 99.88 True indel: indel (> 5bp) 2381246 2382814 15451 17019 CM091751.1 scf7180000184025 98.28 True indel: indel (> 5bp) 2383086 2384170 17265 18349 CM091751.1 scf7180000184025 99.45 True fake: scaffold gap size wrong estimation (local) 2384824 2385815 20442 21433 CM091751.1 scf7180000184025 99.9 True indel: indel (> 5bp) 2385929 2386783 21557 22411 CM091751.1 scf7180000184025 99.42 True fake: scaffold gap size wrong estimation (local) 2388297 2389701 23483 24887 CM091751.1 scf7180000184025 99.22 True indel: indel (<= 5bp) 2389702 2391902 24893 27093 CM091751.1 scf7180000184025 99.64 True local misassembly 2393029 2396378 27364 30713 CM091751.1 scf7180000184025 99.7 True fake: scaffold gap size wrong estimation (local) 2395011 2398763 31143 34939 CM091751.1 scf7180000184025 99.25 True fake: scaffold gap size wrong estimation (local) 2398872 2399583 35039 35750 CM091751.1 scf7180000184025 99.72 True fake: scaffold gap size wrong estimation (local) 2401077 2401720 36748 37391 CM091751.1 scf7180000184025 98.91 True local misassembly 2403219 2403938 38355 39074 CM091751.1 scf7180000184025 99.58 True indel: indel (> 5bp) 2403939 2405106 39088 40255 CM091751.1 scf7180000184025 99.4 True indel: indel (> 5bp) 2405209 2406055 40364 41210 CM091751.1 scf7180000184025 99.29 True indel: indel (<= 5bp) 2406056 2406818 41212 41974 CM091751.1 scf7180000184025 99.48 True indel: indel (<= 5bp) 2407090 2408498 42248 43656 CM091751.1 scf7180000184025 99.72 True indel: indel (<= 5bp) 2408499 2412332 43658 47491 CM091751.1 scf7180000184025 99.87 True indel: indel (<= 5bp) 2412334 2414571 47492 49729 CM091751.1 scf7180000184025 99.87 True indel: indel (> 5bp) 2414958 2415885 50131 51058 CM091751.1 scf7180000184025 99.68 True indel: indel (<= 5bp) 2415944 2417238 51120 52414 CM091751.1 scf7180000184025 99.77 True local misassembly 2418297 2419062 53478 54243 CM091751.1 scf7180000184025 99.48 True indel: indel (<= 5bp) 2419103 2419717 54286 54900 CM091751.1 scf7180000184025 99.84 True indel: indel (<= 5bp) 2419718 2420656 54903 55841 CM091751.1 scf7180000184025 100.0 True local misassembly 2421211 2423611 56394 58794 CM091751.1 scf7180000184025 99.83 True indel: indel (<= 5bp) 2423612 2424607 58798 59793 CM091751.1 scf7180000184025 99.8 True indel: indel (<= 5bp) 2425070 2425602 60259 60791 CM091751.1 scf7180000184025 99.81 True indel: indel (> 5bp) 2425609 2426882 60792 62065 CM091751.1 scf7180000184025 99.53 True indel: indel (<= 5bp) 2426883 2428787 62067 63971 CM091751.1 scf7180000184025 99.74 True fake: scaffold gap size wrong estimation (local) 2428971 2429626 64671 65326 CM091751.1 scf7180000184025 100.0 True fake: scaffold gap size wrong estimation (local) 2429887 2431800 65613 67526 CM091751.1 scf7180000184025 99.53 True fake: scaffold gap size wrong estimation (local) 2432749 2434047 68178 69478 CM091751.1 scf7180000184025 99.62 True indel: indel (> 5bp) 2434141 2487948 69598 122456 CM091751.1 scf7180000184025 97.39 True fake: scaffold gap size wrong estimation (local) 2488387 2489030 123046 123689 CM091751.1 scf7180000184025 99.53 True indel: indel (<= 5bp) 2489188 2491441 123849 126102 CM091751.1 scf7180000184025 99.6 True indel: indel (<= 5bp) 2491443 2492243 126103 126903 CM091751.1 scf7180000184025 100.0 True fake: scaffold gap size wrong estimation (local) 2493312 2495870 127953 130511 CM091751.1 scf7180000184025 99.88 True local misassembly 2497287 2497941 131461 132115 CM091751.1 scf7180000184025 100.0 True indel: indel (<= 5bp) 2497943 2502311 132116 136484 CM091751.1 scf7180000184025 99.84 True indel: stretch of mismatches 2502745 2504780 136918 138953 CM091751.1 scf7180000184025 99.8 True indel: indel (<= 5bp) 2504782 2507122 138954 141294 CM091751.1 scf7180000184025 99.66 True fake: scaffold gap size wrong estimation (local) 2509680 2510191 142452 142963 CM091751.1 scf7180000184025 99.41 True indel: indel (<= 5bp) 2510192 2511018 142965 143791 CM091751.1 scf7180000184025 99.27 True fake: scaffold gap size wrong estimation (local) 2513435 2535529 144692 166783 CM091751.1 scf7180000184025 99.57 True fake: scaffold gap size wrong estimation (local) 2535725 2536748 166967 167990 CM091751.1 scf7180000184025 99.61 True indel: indel (<= 5bp) 2536750 2537292 167991 168533 CM091751.1 scf7180000184025 99.63 True indel: indel (<= 5bp) 2537294 2540155 168534 171395 CM091751.1 scf7180000184025 99.51 True local misassembly 2543759 2544319 171488 172048 CM091751.1 scf7180000184025 99.82 True indel: stretch of mismatches 2544336 2544939 172065 172668 CM091751.1 scf7180000184025 99.34 True indel: indel (<= 5bp) 2544940 2545574 172670 173304 CM091751.1 scf7180000184025 99.84 True local misassembly 2546375 2548491 174106 176222 CM091751.1 scf7180000184025 99.48 True indel: indel (> 5bp) 2548732 2549507 176500 177275 CM091751.1 scf7180000184025 100.0 True local misassembly 2550673 2552543 178447 180317 CM091751.1 scf7180000184025 99.57 True indel: indel (<= 5bp) 2552989 2555449 180767 183227 CM091751.1 scf7180000184025 99.55 True indel: indel (<= 5bp) 2555451 2556347 183228 184124 CM091751.1 scf7180000184025 99.89 True local misassembly 2557007 2557707 184788 185488 CM091751.1 scf7180000184025 99.86 True indel: indel (<= 5bp) 2557940 2559071 185724 186855 CM091751.1 scf7180000184025 99.65 True indel: indel (<= 5bp) 2559073 2561198 186856 188981 CM091751.1 scf7180000184025 99.62 True indel: indel (<= 5bp) 2561199 2561819 188983 189603 CM091751.1 scf7180000184025 99.84 True indel: indel (> 5bp) 2561892 2562739 189658 190505 CM091751.1 scf7180000184025 98.23 True local misassembly 2563469 2564016 191242 191789 CM091751.1 scf7180000184025 99.27 True indel: indel (<= 5bp) 2564351 2566697 192127 194473 CM091751.1 scf7180000184025 99.7 True translocation 1221639 1223573 196840 194906 CM091757.1 scf7180000184025 99.64 True CONTIG scf7180000184025 196840 misassembled 11344874 11345460 590 4 CM091765.1 scf7180000184026 97.44 True translocation, scaffold gap is present 834005 862845 962 29870 CM091756.1 scf7180000184026 99.17 True indel: indel (> 5bp) 862896 919066 29934 85989 CM091756.1 scf7180000184026 99.17 True fake: scaffold gap size wrong estimation (local) 919397 919953 86272 86828 CM091756.1 scf7180000184026 99.64 True local misassembly 920571 922742 87460 89631 CM091756.1 scf7180000184026 99.63 True indel: indel (<= 5bp) 922745 924028 89632 90915 CM091756.1 scf7180000184026 99.53 True local misassembly 925168 926254 92020 93106 CM091756.1 scf7180000184026 100.0 True indel: indel (<= 5bp) 926260 927054 93107 93901 CM091756.1 scf7180000184026 99.5 True fake: scaffold gap size wrong estimation (local) 927996 928661 96199 96864 CM091756.1 scf7180000184026 99.85 True indel: indel (<= 5bp) 928662 929340 96866 97544 CM091756.1 scf7180000184026 100.0 True indel: indel (> 5bp) 929341 930146 97553 98358 CM091756.1 scf7180000184026 100.0 True fake: scaffold gap size wrong estimation (local) 931114 932105 98909 99900 CM091756.1 scf7180000184026 99.9 True indel: indel (<= 5bp) 932520 933117 100317 100914 CM091756.1 scf7180000184026 100.0 True indel: indel (<= 5bp) 933118 934279 100916 102077 CM091756.1 scf7180000184026 99.66 True indel: indel (<= 5bp) 934281 935605 102078 103402 CM091756.1 scf7180000184026 99.4 True indel: stretch of mismatches 935917 939887 103714 107684 CM091756.1 scf7180000184026 99.75 True local misassembly 940774 941667 108581 109474 CM091756.1 scf7180000184026 99.66 True indel: indel (<= 5bp) 941669 942740 109475 110546 CM091756.1 scf7180000184026 99.81 True indel: indel (<= 5bp) 942761 944331 110569 112139 CM091756.1 scf7180000184026 99.87 True indel: indel (<= 5bp) 944332 945134 112141 112943 CM091756.1 scf7180000184026 99.63 True fake: scaffold gap size wrong estimation (local) 946676 1062246 114632 229788 CM091756.1 scf7180000184026 99.08 True fake: scaffold gap size wrong estimation (local) 1062364 1161622 229897 329168 CM091756.1 scf7180000184026 99.3 True indel: indel (> 5bp) 1161658 1201960 329179 369522 CM091756.1 scf7180000184026 99.45 True indel: indel (> 5bp) 1202137 1321005 369617 488433 CM091756.1 scf7180000184026 99.46 True fake: scaffold gap size wrong estimation (local) 1321454 1356938 488545 524113 CM091756.1 scf7180000184026 99.14 True fake: scaffold gap size wrong estimation (local) 1357209 1359629 524308 526728 CM091756.1 scf7180000184026 99.71 True indel: indel (<= 5bp) 1359634 1360479 526729 527574 CM091756.1 scf7180000184026 98.94 True local misassembly 1360867 1362096 527575 528804 CM091756.1 scf7180000184026 99.67 True fake: scaffold gap size wrong estimation (local) 1363392 1364053 529693 530354 CM091756.1 scf7180000184026 99.7 True fake: scaffold gap size wrong estimation (local) 1364609 1369477 530934 535802 CM091756.1 scf7180000184026 99.57 True fake: scaffold gap size wrong estimation (local) 1369563 1396777 535911 563149 CM091756.1 scf7180000184026 99.56 True indel: indel (> 5bp) 1396810 1406724 563193 573163 CM091756.1 scf7180000184026 98.64 True fake: scaffold gap size wrong estimation (local) 1406846 1476573 573708 642969 CM091756.1 scf7180000184026 98.3 True fake: scaffold gap size wrong estimation (local) 1477411 1480430 643165 646191 CM091756.1 scf7180000184026 99.04 True fake: scaffold gap size wrong estimation (local) 1480888 1620342 646294 785216 CM091756.1 scf7180000184026 99.31 True local misassembly 1620876 1684838 785768 850239 CM091756.1 scf7180000184026 97.89 True indel: indel (> 5bp) 1684879 1766612 850331 932261 CM091756.1 scf7180000184026 99.33 True fake: scaffold gap size wrong estimation (local) 1766907 1813521 932449 979335 CM091756.1 scf7180000184026 99.07 True fake: scaffold gap size wrong estimation (local) 1813941 1866207 979404 1031422 CM091756.1 scf7180000184026 98.73 True fake: scaffold gap size wrong estimation (local) 1866432 1936544 1031819 1101834 CM091756.1 scf7180000184026 99.09 True fake: scaffold gap size wrong estimation (local) 1937437 2140356 1102135 1304364 CM091756.1 scf7180000184026 99.12 True indel: stretch of mismatches 2140357 2145639 1304365 1309650 CM091756.1 scf7180000184026 99.2 True fake: scaffold gap size wrong estimation (local) 2145798 2148319 1309733 1312286 CM091756.1 scf7180000184026 98.78 True CONTIG scf7180000184026 1312286 misassembled 13718758 13724414 5660 9 CM091759.1 scf7180000184027 99.58 True fake: not a misassembly (possible transposable element) 553507 554924 5661 7078 CM091755.1 scf7180000184027 100.0 True fake: not a misassembly (possible transposable element) 13713064 13720107 14151 7099 CM091759.1 scf7180000184027 99.33 True fake: scaffold gap size wrong estimation (local) 13613206 13712902 112701 14231 CM091759.1 scf7180000184027 98.5 True indel: indel (<= 5bp) 13584930 13613190 141005 112722 CM091759.1 scf7180000184027 99.74 True fake: scaffold gap size wrong estimation (local) 13572514 13584790 153056 141124 CM091759.1 scf7180000184027 96.73 True fake: scaffold gap size wrong estimation (local) 13532736 13572260 192628 153211 CM091759.1 scf7180000184027 99.05 True indel: indel (> 5bp) 13511674 13532715 214132 192629 CM091759.1 scf7180000184027 97.15 True indel: indel (> 5bp) 13437090 13511636 288065 214182 CM091759.1 scf7180000184027 98.1 True indel: indel (> 5bp) 13425657 13437048 299554 288157 CM091759.1 scf7180000184027 99.06 True CONTIG scf7180000184027 299565 correct 4187146 4187654 2984 2476 CM091768.1 scf7180000184028 100.0 True CONTIG scf7180000184028 3003 correct 3212025 3217011 5008 14 CM091760.1 scf7180000184029 99.46 True fake: scaffold gap size wrong estimation (local) 3210191 3211332 6686 5543 CM091760.1 scf7180000184029 99.74 True local misassembly 3178011 3209666 39590 8255 CM091760.1 scf7180000184029 98.19 True fake: scaffold gap size wrong estimation (local) 3024508 3177906 191010 39686 CM091760.1 scf7180000184029 98.02 True indel: indel (> 5bp) 3008866 3024485 206706 191071 CM091760.1 scf7180000184029 99.36 True fake: scaffold gap size wrong estimation (local) 2944869 3008204 270224 207079 CM091760.1 scf7180000184029 99.23 True fake: scaffold gap size wrong estimation (local) 2930836 2943888 283657 270602 CM091760.1 scf7180000184029 99.61 True fake: scaffold gap size wrong estimation (local) 2884995 2930440 329140 283769 CM091760.1 scf7180000184029 99.16 True fake: scaffold gap size wrong estimation (local) 2825917 2884821 388090 329272 CM091760.1 scf7180000184029 99.29 True indel: indel (> 5bp) 2819075 2825688 394878 388282 CM091760.1 scf7180000184029 99.24 True local misassembly 2816573 2818113 397405 395863 CM091760.1 scf7180000184029 99.74 True fake: scaffold gap size wrong estimation (local) 2625494 2816386 588488 397544 CM091760.1 scf7180000184029 99.52 True indel: indel (> 5bp) 2588391 2625198 626009 588718 CM091760.1 scf7180000184029 98.35 True fake: scaffold gap size wrong estimation (local) 2477018 2588247 737239 626046 CM091760.1 scf7180000184029 99.73 True fake: not a misassembly (possible transposable element) 1948431 1949283 737240 738092 CM091764.1 scf7180000184029 98.81 True fake: not a misassembly (possible transposable element) 2453621 2476856 761350 738113 CM091760.1 scf7180000184029 99.86 True CONTIG scf7180000184029 763533 correct 1799250 1806889 7474 5 CM091753.1 scf7180000184030 97.27 True fake: scaffold gap size wrong estimation (local) 1794888 1798908 11829 7811 CM091753.1 scf7180000184030 99.55 True fake: scaffold gap size wrong estimation (local) 1792746 1794337 13565 12015 CM091753.1 scf7180000184030 96.99 True fake: scaffold gap size wrong estimation (local) 1789196 1792584 17053 13640 CM091753.1 scf7180000184030 97.38 True fake: scaffold gap size wrong estimation (local) 1782747 1789058 23502 17183 CM091753.1 scf7180000184030 99.35 True fake: scaffold gap size wrong estimation (local) 1781799 1782519 24722 24002 CM091753.1 scf7180000184030 99.72 True indel: indel (> 5bp) 1780662 1781515 25840 24987 CM091753.1 scf7180000184030 99.53 True indel: indel (<= 5bp) 1779672 1780661 26831 25842 CM091753.1 scf7180000184030 99.6 True indel: indel (> 5bp) 1778949 1779543 27540 26946 CM091753.1 scf7180000184030 99.83 True fake: scaffold gap size wrong estimation (local) 1778219 1778881 28566 27904 CM091753.1 scf7180000184030 99.4 True indel: indel (<= 5bp) 1777131 1777998 29652 28785 CM091753.1 scf7180000184030 99.65 True fake: scaffold gap size wrong estimation (local) 1763124 1777015 44051 29756 CM091753.1 scf7180000184030 96.82 True fake: scaffold gap size wrong estimation (local) 1742994 1762659 64589 44912 CM091753.1 scf7180000184030 99.69 True fake: scaffold gap size wrong estimation (local) 1721380 1738060 82493 65796 CM091753.1 scf7180000184030 99.26 True indel: indel (> 5bp) 1713704 1721281 90201 82624 CM091753.1 scf7180000184030 99.56 True fake: scaffold gap size wrong estimation (local) 1697968 1713471 105464 90415 CM091753.1 scf7180000184030 96.54 True fake: scaffold gap size wrong estimation (local) 1680750 1697877 122655 105543 CM091753.1 scf7180000184030 99.79 True fake: scaffold gap size wrong estimation (local) 1679300 1680499 123919 122719 CM091753.1 scf7180000184030 99.92 True fake: scaffold gap size wrong estimation (local) 1672816 1679102 130139 124051 CM091753.1 scf7180000184030 96.82 True fake: scaffold gap size wrong estimation (local) 1666957 1672653 135958 130253 CM091753.1 scf7180000184030 99.37 True fake: scaffold gap size wrong estimation (local) 1656878 1666734 146000 136183 CM091753.1 scf7180000184030 99.52 True fake: scaffold gap size wrong estimation (local) 1633128 1656711 169742 146134 CM091753.1 scf7180000184030 99.92 True fake: scaffold gap size wrong estimation (local) 1631390 1632960 171437 169867 CM091753.1 scf7180000184030 100.0 True fake: scaffold gap size wrong estimation (local) 1628845 1631389 174255 171711 CM091753.1 scf7180000184030 100.0 True local misassembly 1627086 1628211 176016 174891 CM091753.1 scf7180000184030 97.69 True indel: indel (<= 5bp) 1625997 1627085 177107 176019 CM091753.1 scf7180000184030 100.0 True local misassembly 1624831 1625695 178048 177184 CM091753.1 scf7180000184030 100.0 True fake: scaffold gap size wrong estimation (local) 1622377 1623601 180436 179212 CM091753.1 scf7180000184030 99.76 True indel: indel (<= 5bp) 1621825 1622376 180989 180438 CM091753.1 scf7180000184030 96.2 True fake: scaffold gap size wrong estimation (local) 1598899 1620094 203378 181936 CM091753.1 scf7180000184030 95.78 True fake: scaffold gap size wrong estimation (local) 1591503 1598687 210699 203515 CM091753.1 scf7180000184030 99.96 True fake: scaffold gap size wrong estimation (local) 1586855 1590182 214894 211567 CM091753.1 scf7180000184030 99.97 True fake: scaffold gap size wrong estimation (local) 1583196 1586170 218361 215387 CM091753.1 scf7180000184030 99.93 True fake: scaffold gap size wrong estimation (local) 1542473 1582971 258917 218429 CM091753.1 scf7180000184030 99.92 True fake: scaffold gap size wrong estimation (local) 1534195 1542125 267182 259248 CM091753.1 scf7180000184030 99.94 True fake: scaffold gap size wrong estimation (local) 1529511 1533579 271595 267628 CM091753.1 scf7180000184030 96.56 True relocation, scaffold gap is present, inconsistency = 27686 1467028 1480410 306341 293010 CM091753.1 scf7180000184030 99.57 True relocation, scaffold gap is present, inconsistency = -352906 1806905 1818807 319349 307468 CM091753.1 scf7180000184030 99.5 True CONTIG scf7180000184030 319377 misassembled 9011684 9013715 2025 1 CM091756.1 scf7180000184031 98.63 True CONTIG scf7180000184031 3583 correct 13832118 13832730 58 670 CM091754.1 scf7180000184032 99.18 True fake: scaffold gap size wrong estimation (local) 13833437 13834407 1475 2452 CM091754.1 scf7180000184032 98.57 True indel: indel (> 5bp) 13834512 13837764 2564 5807 CM091754.1 scf7180000184032 96.66 True fake: scaffold gap size wrong estimation (local) 13837645 13845087 6425 13837 CM091754.1 scf7180000184032 99.07 True fake: scaffold gap size wrong estimation (local) 13845766 13849572 14039 17792 CM091754.1 scf7180000184032 97.67 True CONTIG scf7180000184032 17792 correct 11547953 11627517 1021 80555 CM091755.1 scf7180000184033 99.18 True indel: indel (> 5bp) 11627606 11630367 80632 83391 CM091755.1 scf7180000184033 99.31 True fake: scaffold gap size wrong estimation (local) 11630583 11698163 83550 151087 CM091755.1 scf7180000184033 99.23 True fake: scaffold gap size wrong estimation (local) 11699748 11714756 151861 166870 CM091755.1 scf7180000184033 99.21 True fake: scaffold gap size wrong estimation (local) 11714907 11764965 166954 217025 CM091755.1 scf7180000184033 99.29 True fake: scaffold gap size wrong estimation (extensive) 11756388 11757188 217061 217859 CM091755.1 scf7180000184033 99.13 True fake: scaffold gap size wrong estimation (extensive) 11764968 11783054 217880 235977 CM091755.1 scf7180000184033 99.6 True local misassembly 11784319 11855748 235978 306287 CM091755.1 scf7180000184033 96.66 True indel: indel (<= 5bp) 11855789 12050510 306333 500537 CM091755.1 scf7180000184033 99.19 True indel: indel (> 5bp) 12050721 12326238 500758 775959 CM091755.1 scf7180000184033 99.21 True fake: scaffold gap size wrong estimation (local) 12326356 12459306 776050 909097 CM091755.1 scf7180000184033 99.3 True fake: scaffold gap size wrong estimation (local) 12459378 12572216 909172 1021782 CM091755.1 scf7180000184033 99.13 True fake: scaffold gap size wrong estimation (local) 12572478 12612721 1022046 1062022 CM091755.1 scf7180000184033 98.8 True translocation 3724060 3726035 1063999 1062023 CM091763.1 scf7180000184033 98.79 True CONTIG scf7180000184033 1064068 misassembled 9458776 9472715 17439 3450 CM091765.1 scf7180000184034 99.18 True fake: scaffold gap size wrong estimation (local) 9406390 9458565 69423 17503 CM091765.1 scf7180000184034 98.85 True fake: scaffold gap size wrong estimation (local) 9398106 9406001 78086 70196 CM091765.1 scf7180000184034 99.53 True fake: scaffold gap size wrong estimation (local) 9312705 9397253 162953 78517 CM091765.1 scf7180000184034 99.41 True fake: scaffold gap size wrong estimation (local) 9308378 9311893 166860 163346 CM091765.1 scf7180000184034 99.8 True fake: scaffold gap size wrong estimation (local) 9306227 9308275 168999 166960 CM091765.1 scf7180000184034 98.68 True fake: scaffold gap size wrong estimation (local) 9300839 9305888 174546 169473 CM091765.1 scf7180000184034 99.7 True fake: scaffold gap size wrong estimation (local) 9256118 9300649 219341 174600 CM091765.1 scf7180000184034 97.15 True fake: scaffold gap size wrong estimation (local) 9255194 9255865 220721 220050 CM091765.1 scf7180000184034 100.0 True CONTIG scf7180000184034 222517 correct 9364556 9367051 2496 1 CM091751.1 scf7180000184035 99.73 True translocation 13718386 13758500 42634 2497 CM091755.1 scf7180000184035 99.62 True fake: scaffold gap size wrong estimation (local) 13711765 13714958 47202 44000 CM091755.1 scf7180000184035 99.41 True CONTIG scf7180000184035 47202 misassembled 19525343 19526802 3167 1739 CM091751.1 scf7180000184036 96.51 True fake: not a misassembly (possible transposable element) 19509717 19510967 4438 3188 CM091751.1 scf7180000184036 99.84 True fake: not a misassembly (possible transposable element) 19522673 19525053 6852 4459 CM091751.1 scf7180000184036 97.58 True fake: scaffold gap size wrong estimation (local) 19520628 19522139 9462 7954 CM091751.1 scf7180000184036 98.81 True CONTIG scf7180000184036 9462 correct CONTIG scf7180000184037 727 unaligned 12216817 12221977 1 5207 CM091756.1 scf7180000184038 99.2 True fake: scaffold gap size wrong estimation (local) 12225592 12226505 6799 7706 CM091756.1 scf7180000184038 98.7 True fake: scaffold gap size wrong estimation (local) 12226686 12230460 7861 11648 CM091756.1 scf7180000184038 99.1 True fake: scaffold gap size wrong estimation (local) 12232474 12272762 12805 52514 CM091756.1 scf7180000184038 98.08 True indel: indel (> 5bp) 12272947 12281184 52658 60898 CM091756.1 scf7180000184038 99.87 True fake: scaffold gap size wrong estimation (local) 12281743 12287223 61395 66690 CM091756.1 scf7180000184038 96.32 True fake: scaffold gap size wrong estimation (local) 12287399 12289125 66827 68554 CM091756.1 scf7180000184038 99.6 True CONTIG scf7180000184038 68568 correct 27589 65357 853 38417 CM091767.1 scf7180000184039 99.08 True fake: scaffold gap size wrong estimation (local) 65731 70174 38505 42993 CM091767.1 scf7180000184039 97.36 True fake: scaffold gap size wrong estimation (local) 70383 97033 43178 69757 CM091767.1 scf7180000184039 98.81 True fake: scaffold gap size wrong estimation (local) 97114 127863 69865 100618 CM091767.1 scf7180000184039 99.16 True fake: scaffold gap size wrong estimation (local) 128166 362248 100711 334316 CM091767.1 scf7180000184039 99.26 True local misassembly 362296 365425 334456 337595 CM091767.1 scf7180000184039 99.33 True fake: scaffold gap size wrong estimation (local) 366270 572454 337958 544121 CM091767.1 scf7180000184039 99.44 True local misassembly 572703 661455 544267 633013 CM091767.1 scf7180000184039 99.4 True inversion 664116 666809 635707 633014 CM091767.1 scf7180000184039 99.37 True relocation, inconsistency = 10658 677468 729712 635708 687989 CM091767.1 scf7180000184039 99.44 True fake: scaffold gap size wrong estimation (local) 729744 781992 688065 740204 CM091767.1 scf7180000184039 99.07 True indel: indel (<= 5bp) 782048 879400 740264 837641 CM091767.1 scf7180000184039 99.46 True fake: scaffold gap size wrong estimation (local) 879951 952007 837819 909839 CM091767.1 scf7180000184039 99.36 True indel: indel (> 5bp) 952052 1048919 909893 1006775 CM091767.1 scf7180000184039 99.47 True indel: indel (> 5bp) 1048995 1050823 1006837 1008665 CM091767.1 scf7180000184039 99.84 True indel: indel (<= 5bp) 1050825 1052661 1008666 1010502 CM091767.1 scf7180000184039 99.56 True indel: indel (<= 5bp) 1052662 1053549 1010504 1011391 CM091767.1 scf7180000184039 99.77 True indel: indel (<= 5bp) 1053550 1056364 1011396 1014210 CM091767.1 scf7180000184039 99.86 True local misassembly 1057009 1057783 1014867 1015641 CM091767.1 scf7180000184039 99.87 True indel: indel (<= 5bp) 1057786 1058799 1015642 1016655 CM091767.1 scf7180000184039 99.9 True local misassembly 1059381 1060129 1017238 1017986 CM091767.1 scf7180000184039 99.87 True indel: indel (<= 5bp) 1060130 1062712 1017988 1020570 CM091767.1 scf7180000184039 99.77 True indel: indel (<= 5bp) 1062714 1065180 1020571 1023037 CM091767.1 scf7180000184039 99.88 True indel: indel (<= 5bp) 1065181 1065737 1023042 1023598 CM091767.1 scf7180000184039 99.82 True indel: indel (<= 5bp) 1065738 1066850 1023602 1024714 CM091767.1 scf7180000184039 99.64 True indel: indel (<= 5bp) 1066852 1067365 1024715 1025228 CM091767.1 scf7180000184039 99.61 True local misassembly 1068091 1069293 1025957 1027159 CM091767.1 scf7180000184039 99.83 True indel: indel (<= 5bp) 1069295 1070097 1027160 1027962 CM091767.1 scf7180000184039 99.63 True indel: indel (<= 5bp) 1070180 1072561 1028048 1030429 CM091767.1 scf7180000184039 99.96 True indel: indel (> 5bp) 1072933 1076163 1030811 1034041 CM091767.1 scf7180000184039 99.66 True indel: indel (> 5bp) 1076172 1076993 1034042 1034863 CM091767.1 scf7180000184039 99.76 True indel: indel (<= 5bp) 1076994 1077896 1034865 1035767 CM091767.1 scf7180000184039 99.45 True indel: indel (<= 5bp) 1078245 1078808 1036119 1036682 CM091767.1 scf7180000184039 99.47 True indel: indel (<= 5bp) 1078810 1080961 1036683 1038834 CM091767.1 scf7180000184039 99.77 True indel: indel (<= 5bp) 1080962 1081937 1038837 1039812 CM091767.1 scf7180000184039 99.28 True indel: indel (<= 5bp) 1081938 1082454 1039814 1040330 CM091767.1 scf7180000184039 99.42 True indel: indel (<= 5bp) 1082456 1083305 1040331 1041180 CM091767.1 scf7180000184039 99.88 True local misassembly 1084112 1084845 1041983 1042716 CM091767.1 scf7180000184039 99.86 True indel: indel (<= 5bp) 1085276 1088682 1043149 1046555 CM091767.1 scf7180000184039 99.5 True indel: indel (> 5bp) 1089122 1089900 1046946 1047724 CM091767.1 scf7180000184039 99.36 True indel: indel (<= 5bp) 1089902 1090599 1047725 1048422 CM091767.1 scf7180000184039 99.86 True indel: indel (<= 5bp) 1090600 1091167 1048424 1048991 CM091767.1 scf7180000184039 100.0 True indel: indel (> 5bp) 1091174 1091912 1048992 1049730 CM091767.1 scf7180000184039 100.0 True indel: indel (<= 5bp) 1091919 1092478 1049741 1050300 CM091767.1 scf7180000184039 99.46 True indel: indel (<= 5bp) 1092479 1093354 1050302 1051177 CM091767.1 scf7180000184039 100.0 True indel: indel (> 5bp) 1093355 1095078 1051185 1052908 CM091767.1 scf7180000184039 99.65 True indel: indel (<= 5bp) 1095079 1095855 1052910 1053686 CM091767.1 scf7180000184039 100.0 True indel: indel (<= 5bp) 1095856 1096919 1053691 1054754 CM091767.1 scf7180000184039 99.62 True indel: indel (<= 5bp) 1096925 1098860 1054755 1056690 CM091767.1 scf7180000184039 99.79 True indel: indel (<= 5bp) 1098874 1100289 1056706 1058121 CM091767.1 scf7180000184039 99.93 True indel: indel (<= 5bp) 1100290 1101433 1058123 1059266 CM091767.1 scf7180000184039 99.91 True indel: indel (<= 5bp) 1101598 1102710 1059428 1060540 CM091767.1 scf7180000184039 99.82 True indel: indel (> 5bp) 1103200 1104595 1061038 1062433 CM091767.1 scf7180000184039 100.0 True indel: indel (<= 5bp) 1105007 1105534 1062850 1063377 CM091767.1 scf7180000184039 99.62 True indel: indel (> 5bp) 1105551 1106524 1063378 1064351 CM091767.1 scf7180000184039 99.69 True indel: stretch of mismatches 1106568 1109103 1064395 1066930 CM091767.1 scf7180000184039 99.65 True indel: indel (<= 5bp) 1109104 1112219 1066932 1070047 CM091767.1 scf7180000184039 99.78 True indel: indel (<= 5bp) 1112567 1113071 1070397 1070901 CM091767.1 scf7180000184039 99.21 True indel: indel (> 5bp) 1113072 1113751 1070909 1071588 CM091767.1 scf7180000184039 100.0 True local misassembly 1114306 1117875 1072142 1075711 CM091767.1 scf7180000184039 99.72 True local misassembly 1123452 1124555 1075982 1077085 CM091767.1 scf7180000184039 99.64 True indel: indel (<= 5bp) 1124556 1126653 1077087 1079184 CM091767.1 scf7180000184039 99.57 True indel: indel (<= 5bp) 1126654 1129569 1079186 1082101 CM091767.1 scf7180000184039 99.73 True indel: indel (<= 5bp) 1129858 1132994 1082391 1085527 CM091767.1 scf7180000184039 99.68 True indel: indel (<= 5bp) 1132995 1137812 1085529 1090346 CM091767.1 scf7180000184039 99.61 True indel: indel (<= 5bp) 1137813 1138487 1090348 1091022 CM091767.1 scf7180000184039 99.56 True indel: indel (<= 5bp) 1138489 1139089 1091023 1091623 CM091767.1 scf7180000184039 100.0 True indel: indel (> 5bp) 1139140 1233717 1091686 1186068 CM091767.1 scf7180000184039 99.0 True fake: scaffold gap size wrong estimation (local) 1233871 1288253 1186181 1240149 CM091767.1 scf7180000184039 98.2 True indel: indel (> 5bp) 1288427 1343987 1240313 1295652 CM091767.1 scf7180000184039 98.88 True fake: scaffold gap size wrong estimation (local) 1344146 1359806 1295804 1311459 CM091767.1 scf7180000184039 99.23 True indel: indel (> 5bp) 1359879 1377972 1311565 1329693 CM091767.1 scf7180000184039 99.4 True indel: indel (<= 5bp) 1378032 1441678 1329758 1393325 CM091767.1 scf7180000184039 98.92 True fake: not a misassembly (possible transposable element) 381695 382586 1394237 1393346 CM091757.1 scf7180000184039 99.78 True fake: not a misassembly (possible transposable element) 1441618 1568922 1394238 1520575 CM091767.1 scf7180000184039 98.45 True fake: scaffold gap size wrong estimation (local) 1569276 1599737 1520701 1551196 CM091767.1 scf7180000184039 99.15 True fake: scaffold gap size wrong estimation (local) 1600126 1622283 1551375 1573350 CM091767.1 scf7180000184039 98.58 True fake: scaffold gap size wrong estimation (local) 1622685 1629558 1573560 1580444 CM091767.1 scf7180000184039 99.59 True fake: scaffold gap size wrong estimation (local) 1629785 1765497 1580525 1715645 CM091767.1 scf7180000184039 99.0 True fake: scaffold gap size wrong estimation (local) 1765706 1776446 1715899 1726641 CM091767.1 scf7180000184039 99.46 True fake: scaffold gap size wrong estimation (local) 1776588 1786184 1726778 1736342 CM091767.1 scf7180000184039 99.3 True indel: indel (<= 5bp) 1786289 1845608 1736452 1795956 CM091767.1 scf7180000184039 99.37 True fake: scaffold gap size wrong estimation (local) 1845757 1866346 1796047 1816643 CM091767.1 scf7180000184039 99.66 True fake: scaffold gap size wrong estimation (local) 1866893 1976296 1817013 1926310 CM091767.1 scf7180000184039 99.24 True fake: scaffold gap size wrong estimation (local) 1976362 2031234 1926377 1981302 CM091767.1 scf7180000184039 99.73 True fake: scaffold gap size wrong estimation (local) 2031400 2048702 1981440 1998566 CM091767.1 scf7180000184039 97.86 True fake: scaffold gap size wrong estimation (local) 2048809 2051238 1998671 2001126 CM091767.1 scf7180000184039 98.97 True fake: scaffold gap size wrong estimation (local) 2051364 2066505 2001209 2016241 CM091767.1 scf7180000184039 98.5 True fake: scaffold gap size wrong estimation (local) 2066600 2106413 2016325 2055998 CM091767.1 scf7180000184039 99.45 True fake: scaffold gap size wrong estimation (local) 2107049 2114287 2056226 2063473 CM091767.1 scf7180000184039 99.43 True indel: indel (<= 5bp) 2114414 2115104 2063602 2064292 CM091767.1 scf7180000184039 99.71 True fake: scaffold gap size wrong estimation (local) 2115326 2132777 2064452 2081934 CM091767.1 scf7180000184039 99.13 True fake: scaffold gap size wrong estimation (local) 2133179 2148749 2082020 2097595 CM091767.1 scf7180000184039 99.53 True translocation 10299388 10559027 2357216 2097596 CM091762.1 scf7180000184039 99.21 True CONTIG scf7180000184039 2357250 misassembled 176708 177950 782 2024 CM091764.1 scf7180000184040 99.84 True fake: scaffold gap size wrong estimation (local) 178291 178987 2370 3066 CM091764.1 scf7180000184040 100.0 True fake: scaffold gap size wrong estimation (local) 181234 189048 4204 12014 CM091764.1 scf7180000184040 99.86 True fake: scaffold gap size wrong estimation (local) 189911 191354 12633 14057 CM091764.1 scf7180000184040 98.31 True fake: scaffold gap size wrong estimation (local) 191560 192346 14202 14986 CM091764.1 scf7180000184040 99.61 True fake: scaffold gap size wrong estimation (local) 192492 194619 15092 17219 CM091764.1 scf7180000184040 100.0 True fake: scaffold gap size wrong estimation (local) 194754 212936 17460 35647 CM091764.1 scf7180000184040 99.93 True fake: scaffold gap size wrong estimation (local) 213631 220110 36310 42822 CM091764.1 scf7180000184040 99.45 True CONTIG scf7180000184040 42822 correct 20472915 20473561 647 1 CM091751.1 scf7180000184041 100.0 True fake: scaffold gap size wrong estimation (local) 20439437 20472070 34473 2027 CM091751.1 scf7180000184041 99.17 True fake: scaffold gap size wrong estimation (local) 20393504 20437764 79327 35543 CM091751.1 scf7180000184041 98.38 True fake: scaffold gap size wrong estimation (local) 20372026 20393103 100533 79435 CM091751.1 scf7180000184041 99.02 True fake: scaffold gap size wrong estimation (local) 20369981 20371790 102539 100730 CM091751.1 scf7180000184041 99.34 True local misassembly 20368650 20369683 103573 102540 CM091751.1 scf7180000184041 99.42 True indel: indel (<= 5bp) 20367660 20368648 104562 103574 CM091751.1 scf7180000184041 99.7 True fake: scaffold gap size wrong estimation (local) 20363887 20367460 108347 104771 CM091751.1 scf7180000184041 99.64 True fake: scaffold gap size wrong estimation (local) 20361753 20363621 110406 108537 CM091751.1 scf7180000184041 99.41 True fake: scaffold gap size wrong estimation (local) 20356709 20360848 115299 111110 CM091751.1 scf7180000184041 97.79 True CONTIG scf7180000184041 115322 correct 2077564 2098628 1 20923 CM091762.1 scf7180000184042 99.0 True fake: scaffold gap size wrong estimation (local) 2099228 2134786 21175 56742 CM091762.1 scf7180000184042 99.83 True fake: scaffold gap size wrong estimation (local) 2134959 2145213 56938 67178 CM091762.1 scf7180000184042 99.68 True fake: scaffold gap size wrong estimation (local) 2145287 2227439 67722 149875 CM091762.1 scf7180000184042 99.61 True fake: scaffold gap size wrong estimation (local) 2227800 2229072 150096 151367 CM091762.1 scf7180000184042 99.76 True fake: scaffold gap size wrong estimation (local) 2230046 2566333 152127 487061 CM091762.1 scf7180000184042 99.41 True fake: scaffold gap size wrong estimation (local) 2567377 2634685 487633 554638 CM091762.1 scf7180000184042 99.51 True fake: scaffold gap size wrong estimation (local) 2634777 2701936 554719 621600 CM091762.1 scf7180000184042 99.5 True fake: scaffold gap size wrong estimation (local) 2702790 2730008 621985 649008 CM091762.1 scf7180000184042 99.24 True fake: scaffold gap size wrong estimation (local) 2730161 2766614 649096 685305 CM091762.1 scf7180000184042 99.3 True fake: scaffold gap size wrong estimation (local) 2768675 2819644 687429 738198 CM091762.1 scf7180000184042 99.47 True indel: indel (> 5bp) 2819815 2832283 738375 750837 CM091762.1 scf7180000184042 99.93 True fake: scaffold gap size wrong estimation (local) 2832897 2838257 751026 756373 CM091762.1 scf7180000184042 99.64 True fake: scaffold gap size wrong estimation (local) 2838607 2839171 756971 757535 CM091762.1 scf7180000184042 99.65 True local misassembly 2839263 2839929 757536 758202 CM091762.1 scf7180000184042 96.7 True CONTIG scf7180000184042 758202 correct 10162881 10251712 88833 1 CM091753.1 scf7180000184043 99.61 True indel: indel (> 5bp) 9693353 10162807 557689 88917 CM091753.1 scf7180000184043 99.31 True fake: scaffold gap size wrong estimation (local) 9554159 9693137 696975 557874 CM091753.1 scf7180000184043 99.54 True indel: indel (> 5bp) 9445826 9554119 805111 697036 CM091753.1 scf7180000184043 99.35 True translocation 616617 618631 805112 807131 CM091768.1 scf7180000184043 99.61 True CONTIG scf7180000184043 807131 misassembled 11332586 11333346 765 1 CM091758.1 scf7180000184044 99.48 True fake: scaffold gap size wrong estimation (local) 11166705 11331709 166578 1502 CM091758.1 scf7180000184044 99.58 True indel: indel (<= 5bp) 11144231 11166675 189024 166611 CM091758.1 scf7180000184044 99.43 True CONTIG scf7180000184044 190462 correct 2574524 2587676 13378 1 CM091754.1 scf7180000184045 97.24 True fake: scaffold gap size wrong estimation (local) 2568806 2573994 18701 13439 CM091754.1 scf7180000184045 96.26 True fake: scaffold gap size wrong estimation (local) 2559164 2568415 28074 18822 CM091754.1 scf7180000184045 99.56 True CONTIG scf7180000184045 28098 correct 1234930 1236060 1 1132 CM091751.1 scf7180000184046 99.73 True fake: scaffold gap size wrong estimation (local) 1236828 1237350 2371 2893 CM091751.1 scf7180000184046 99.81 True indel: indel (<= 5bp) 1237353 1238497 2894 4038 CM091751.1 scf7180000184046 99.74 True indel: stretch of mismatches 1238637 1239343 4178 4884 CM091751.1 scf7180000184046 99.86 True local misassembly 1241013 1242054 6549 7590 CM091751.1 scf7180000184046 99.71 True indel: indel (<= 5bp) 1242055 1244232 7592 9769 CM091751.1 scf7180000184046 99.77 True indel: indel (> 5bp) 1244296 1246340 9775 11819 CM091751.1 scf7180000184046 99.76 True indel: indel (<= 5bp) 1246341 1249063 11823 14545 CM091751.1 scf7180000184046 99.45 True indel: indel (<= 5bp) 1249129 1250695 14613 16179 CM091751.1 scf7180000184046 99.3 True indel: indel (<= 5bp) 1250697 1254722 16180 20205 CM091751.1 scf7180000184046 99.8 True indel: stretch of mismatches 1254888 1256668 20371 22151 CM091751.1 scf7180000184046 99.83 True indel: indel (<= 5bp) 1256669 1257212 22153 22696 CM091751.1 scf7180000184046 100.0 True local misassembly 1258164 1260778 23152 25766 CM091751.1 scf7180000184046 99.43 True indel: indel (<= 5bp) 1260779 1262539 25768 27528 CM091751.1 scf7180000184046 99.89 True local misassembly 1263078 1263787 28094 28803 CM091751.1 scf7180000184046 99.58 True indel: indel (<= 5bp) 1263789 1266134 28804 31149 CM091751.1 scf7180000184046 99.66 True fake: scaffold gap size wrong estimation (local) 1266415 1267438 31689 32712 CM091751.1 scf7180000184046 99.22 True indel: indel (<= 5bp) 1267439 1268372 32714 33647 CM091751.1 scf7180000184046 99.46 True indel: indel (<= 5bp) 1268475 1269717 33753 34995 CM091751.1 scf7180000184046 99.76 True local misassembly 1270717 1271721 34996 36000 CM091751.1 scf7180000184046 99.5 True relocation, scaffold gap is present, inconsistency = 307703 1579466 1602746 59112 36042 CM091751.1 scf7180000184046 98.06 True CONTIG scf7180000184046 59112 misassembled 8187703 8188789 1087 1 CM091767.1 scf7180000184047 100.0 True fake: scaffold gap size wrong estimation (local) 8185350 8187184 3620 1748 CM091767.1 scf7180000184047 98.81 True fake: scaffold gap size wrong estimation (local) 8182829 8185125 6384 4066 CM091767.1 scf7180000184047 99.78 True fake: scaffold gap size wrong estimation (local) 8178599 8181165 10084 7514 CM091767.1 scf7180000184047 99.84 True fake: scaffold gap size wrong estimation (local) 8175493 8176588 12612 11517 CM091767.1 scf7180000184047 100.0 True fake: scaffold gap size wrong estimation (local) 8169385 8173967 18546 13964 CM091767.1 scf7180000184047 99.93 True CONTIG scf7180000184047 18546 correct 5440298 5440998 1639 2339 CM091768.1 scf7180000184048 100.0 True fake: scaffold gap size wrong estimation (local) 5440999 5445781 3026 7808 CM091768.1 scf7180000184048 100.0 True fake: scaffold gap size wrong estimation (local) 5446125 5455333 7958 17166 CM091768.1 scf7180000184048 99.97 True fake: scaffold gap size wrong estimation (local) 5456727 5494972 18157 56541 CM091768.1 scf7180000184048 97.76 True relocation, scaffold gap is present, inconsistency = 68320 5563479 5576983 56728 69928 CM091768.1 scf7180000184048 96.2 True fake: scaffold gap size wrong estimation (local) 5577406 5579837 70112 72565 CM091768.1 scf7180000184048 99.92 True CONTIG scf7180000184048 72565 misassembled 8993685 9006054 2 12395 CM091763.1 scf7180000184049 99.14 True fake: scaffold gap size wrong estimation (local) 9006170 9015978 12521 22336 CM091763.1 scf7180000184049 99.2 True fake: scaffold gap size wrong estimation (local) 9016697 9030866 23455 37335 CM091763.1 scf7180000184049 96.82 True fake: scaffold gap size wrong estimation (local) 9031207 9036864 37542 43201 CM091763.1 scf7180000184049 99.35 True translocation 5906086 5909733 47656 43998 CM091762.1 scf7180000184049 99.34 True fake: scaffold gap size wrong estimation (local) 5741403 5905060 212826 48991 CM091762.1 scf7180000184049 99.33 True fake: scaffold gap size wrong estimation (local) 5690468 5741212 263461 212884 CM091762.1 scf7180000184049 99.23 True fake: scaffold gap size wrong estimation (local) 5454722 5690114 498672 263560 CM091762.1 scf7180000184049 99.42 True fake: scaffold gap size wrong estimation (local) 5110493 5454548 844312 498806 CM091762.1 scf7180000184049 99.16 True fake: scaffold gap size wrong estimation (local) 4797440 5110299 1155622 844430 CM091762.1 scf7180000184049 99.0 True fake: scaffold gap size wrong estimation (local) 4759246 4797185 1193764 1155819 CM091762.1 scf7180000184049 99.63 True fake: scaffold gap size wrong estimation (local) 4726262 4758798 1226598 1194049 CM091762.1 scf7180000184049 99.56 True relocation, inconsistency = 6671815 11430614 11526246 1226599 1321325 CM091762.1 scf7180000184049 98.5 True fake: scaffold gap size wrong estimation (local) 11526447 11779839 1321494 1574764 CM091762.1 scf7180000184049 99.43 True fake: scaffold gap size wrong estimation (local) 11780046 11831846 1574966 1626401 CM091762.1 scf7180000184049 98.59 True indel: indel (> 5bp) 11831887 12033998 1626429 1828067 CM091762.1 scf7180000184049 99.37 True fake: scaffold gap size wrong estimation (local) 12034175 12101363 1828723 1893726 CM091762.1 scf7180000184049 96.4 True CONTIG scf7180000184049 1893726 misassembled 914345 916045 2218 521 CM091754.1 scf7180000184050 99.12 True fake: scaffold gap size wrong estimation (local) 912051 913101 4314 3264 CM091754.1 scf7180000184050 99.52 True local misassembly 910188 910971 5289 4506 CM091754.1 scf7180000184050 97.96 True indel: indel (> 5bp) 909120 910061 6368 5427 CM091754.1 scf7180000184050 98.83 True fake: scaffold gap size wrong estimation (local) 907359 908311 7907 6955 CM091754.1 scf7180000184050 99.58 True indel: indel (<= 5bp) 906601 907342 8667 7926 CM091754.1 scf7180000184050 99.6 True fake: scaffold gap size wrong estimation (local) 902007 905643 13029 9401 CM091754.1 scf7180000184050 98.67 True fake: scaffold gap size wrong estimation (local) 900254 901338 14594 13510 CM091754.1 scf7180000184050 99.63 True indel: indel (<= 5bp) 899471 900253 15378 14596 CM091754.1 scf7180000184050 99.62 True local misassembly 897999 899199 16749 15549 CM091754.1 scf7180000184050 99.17 True indel: stretch of mismatches 896977 897931 17771 16817 CM091754.1 scf7180000184050 99.06 True indel: indel (<= 5bp) 894963 896976 19787 17774 CM091754.1 scf7180000184050 99.21 True indel: indel (<= 5bp) 893063 894961 21686 19788 CM091754.1 scf7180000184050 99.74 True indel: indel (<= 5bp) 891493 892815 23258 21936 CM091754.1 scf7180000184050 97.43 True local misassembly 890108 891074 24507 23541 CM091754.1 scf7180000184050 99.48 True indel: indel (<= 5bp) 889356 890107 25263 24512 CM091754.1 scf7180000184050 99.34 True local misassembly 887992 888587 26132 25537 CM091754.1 scf7180000184050 100.0 True indel: indel (<= 5bp) 886890 887583 27233 26540 CM091754.1 scf7180000184050 99.42 True fake: scaffold gap size wrong estimation (local) 886073 886617 27881 27337 CM091754.1 scf7180000184050 99.27 True local misassembly 883854 884775 30034 29113 CM091754.1 scf7180000184050 99.67 True indel: indel (<= 5bp) 882554 883853 31335 30036 CM091754.1 scf7180000184050 99.85 True indel: indel (<= 5bp) 881930 882494 31961 31397 CM091754.1 scf7180000184050 98.23 True indel: indel (<= 5bp) 881081 881905 32813 31989 CM091754.1 scf7180000184050 99.52 True fake: scaffold gap size wrong estimation (local) 868805 880198 44993 33654 CM091754.1 scf7180000184050 97.91 True fake: scaffold gap size wrong estimation (local) 846772 868538 67095 45234 CM091754.1 scf7180000184050 98.16 True indel: indel (> 5bp) 841829 846576 72032 67285 CM091754.1 scf7180000184050 99.41 True fake: scaffold gap size wrong estimation (local) 818675 841749 95734 72198 CM091754.1 scf7180000184050 96.86 True fake: scaffold gap size wrong estimation (local) 816379 818614 98037 95800 CM091754.1 scf7180000184050 99.29 True fake: scaffold gap size wrong estimation (local) 802436 816247 111641 98138 CM091754.1 scf7180000184050 96.17 True fake: scaffold gap size wrong estimation (local) 798833 801031 115504 113306 CM091754.1 scf7180000184050 99.41 True local misassembly 795721 797534 117690 115877 CM091754.1 scf7180000184050 99.72 True local misassembly 793994 794740 119391 118645 CM091754.1 scf7180000184050 99.6 True indel: indel (<= 5bp) 793107 793720 120276 119663 CM091754.1 scf7180000184050 99.51 True fake: scaffold gap size wrong estimation (local) 791714 792872 121677 120519 CM091754.1 scf7180000184050 98.96 True local misassembly 789602 790591 123515 122526 CM091754.1 scf7180000184050 99.39 True local misassembly 788113 788684 124484 123913 CM091754.1 scf7180000184050 99.83 True fake: scaffold gap size wrong estimation (local) 786533 787672 126086 124947 CM091754.1 scf7180000184050 99.65 True local misassembly 783880 784983 127435 126332 CM091754.1 scf7180000184050 99.82 True fake: scaffold gap size wrong estimation (local) 781778 782717 129391 128452 CM091754.1 scf7180000184050 99.04 True local misassembly 779948 780640 131226 130534 CM091754.1 scf7180000184050 99.42 True indel: indel (<= 5bp) 778927 779661 132249 131515 CM091754.1 scf7180000184050 99.73 True fake: scaffold gap size wrong estimation (local) 777540 778195 133566 132911 CM091754.1 scf7180000184050 98.78 True indel: indel (<= 5bp) 776988 777538 134117 133567 CM091754.1 scf7180000184050 99.27 True local misassembly 775029 776272 135494 134251 CM091754.1 scf7180000184050 99.44 True fake: scaffold gap size wrong estimation (local) 771990 774664 138517 135838 CM091754.1 scf7180000184050 99.33 True CONTIG scf7180000184050 138517 correct 9198514 9208981 12036 1547 CM091761.1 scf7180000184051 99.02 True indel: indel (> 5bp) 9132698 9198183 77974 12385 CM091761.1 scf7180000184051 99.36 True fake: scaffold gap size wrong estimation (local) 9108092 9132523 102611 78174 CM091761.1 scf7180000184051 99.59 True CONTIG scf7180000184051 102831 correct 1704266 1706611 3000 655 CM091768.1 scf7180000184052 99.57 True local misassembly 1699732 1702282 5551 3001 CM091768.1 scf7180000184052 98.9 True indel: indel (<= 5bp) 1698649 1699731 6636 5554 CM091768.1 scf7180000184052 98.71 True local misassembly 1696806 1697563 8483 7726 CM091768.1 scf7180000184052 99.21 True indel: indel (<= 5bp) 1675364 1696690 29511 8595 CM091768.1 scf7180000184052 96.68 True fake: scaffold gap size wrong estimation (local) 1659717 1675268 44808 29611 CM091768.1 scf7180000184052 96.55 True indel: indel (> 5bp) 1633214 1659622 71301 44879 CM091768.1 scf7180000184052 97.03 True indel: indel (<= 5bp) 1582212 1633163 122286 71356 CM091768.1 scf7180000184052 99.77 True fake: scaffold gap size wrong estimation (local) 1580416 1581301 123742 122857 CM091768.1 scf7180000184052 98.98 True indel: indel (<= 5bp) 1579638 1580413 124518 123743 CM091768.1 scf7180000184052 98.84 True indel: indel (<= 5bp) 1578579 1579637 125578 124520 CM091768.1 scf7180000184052 99.43 True indel: indel (> 5bp) 1574985 1578562 129161 125584 CM091768.1 scf7180000184052 99.5 True fake: scaffold gap size wrong estimation (local) 1574167 1574984 129997 129180 CM091768.1 scf7180000184052 99.63 True indel: indel (<= 5bp) 1572762 1574166 131403 129999 CM091768.1 scf7180000184052 97.22 True local misassembly 1570417 1571821 133593 132189 CM091768.1 scf7180000184052 99.36 True indel: indel (<= 5bp) 1569837 1570413 134170 133594 CM091768.1 scf7180000184052 100.0 True indel: indel (<= 5bp) 1569237 1569832 134766 134171 CM091768.1 scf7180000184052 99.5 True local misassembly 1565567 1567924 137124 134767 CM091768.1 scf7180000184052 99.28 True indel: indel (<= 5bp) 1563337 1565566 139355 137126 CM091768.1 scf7180000184052 99.19 True indel: indel (> 5bp) 1562649 1563336 140049 139362 CM091768.1 scf7180000184052 99.58 True translocation 14836164 14838358 142244 140050 CM091753.1 scf7180000184052 99.54 True CONTIG scf7180000184052 142244 misassembled 4427071 4427779 709 1 CM091754.1 scf7180000184053 97.04 True fake: scaffold gap size wrong estimation (local) 4424756 4426294 3532 1994 CM091754.1 scf7180000184053 100.0 True fake: scaffold gap size wrong estimation (local) 4419996 4423315 7709 4389 CM091754.1 scf7180000184053 99.91 True fake: scaffold gap size wrong estimation (local) 4419076 4419861 8771 7993 CM091754.1 scf7180000184053 96.64 True CONTIG scf7180000184053 8772 correct 15565119 15585744 66 20028 CM091754.1 scf7180000184054 96.11 True indel: stretch of mismatches 15585831 15592518 20115 26830 CM091754.1 scf7180000184054 99.6 True translocation 9171260 9176667 32360 26947 CM091760.1 scf7180000184054 99.43 True CONTIG scf7180000184054 32360 misassembled 4996090 4998443 2417 57 CM091768.1 scf7180000184055 99.79 True CONTIG scf7180000184055 2422 correct 4232270 4233073 1 804 CM091768.1 scf7180000184056 97.14 True CONTIG scf7180000184056 5605 correct_unaligned 4422549 4464649 41941 1 CM091760.1 scf7180000184057 98.8 True CONTIG scf7180000184057 43321 correct 556693 558035 3607 2262 CM091764.1 scf7180000184058 99.78 True fake: scaffold gap size wrong estimation (local) 553767 555838 6540 4486 CM091764.1 scf7180000184058 99.11 True CONTIG scf7180000184058 7702 correct 31292 34525 1750 4983 CM091761.1 scf7180000184059 99.81 True fake: scaffold gap size wrong estimation (local) 34924 35618 5247 5941 CM091761.1 scf7180000184059 99.71 True indel: indel (<= 5bp) 35620 36239 5942 6561 CM091761.1 scf7180000184059 99.35 True fake: scaffold gap size wrong estimation (local) 40467 44738 6615 10886 CM091761.1 scf7180000184059 99.95 True indel: indel (> 5bp) 44752 46899 10908 13055 CM091761.1 scf7180000184059 99.95 True indel: indel (> 5bp) 46992 50675 13120 16803 CM091761.1 scf7180000184059 99.95 True indel: indel (<= 5bp) 50677 51965 16804 18092 CM091761.1 scf7180000184059 99.92 True indel: indel (<= 5bp) 52413 53869 18543 19999 CM091761.1 scf7180000184059 100.0 True indel: indel (<= 5bp) 53871 56447 20000 22576 CM091761.1 scf7180000184059 99.96 True indel: indel (<= 5bp) 56448 59549 22579 25680 CM091761.1 scf7180000184059 99.87 True indel: indel (<= 5bp) 59550 62879 25686 29015 CM091761.1 scf7180000184059 99.97 True indel: indel (<= 5bp) 62880 66855 29017 32992 CM091761.1 scf7180000184059 99.97 True indel: indel (<= 5bp) 66858 68189 32993 34324 CM091761.1 scf7180000184059 99.93 True relocation, inconsistency = 34097 102287 123464 34325 55727 CM091761.1 scf7180000184059 98.49 True CONTIG scf7180000184059 55866 misassembled 7469355 7470139 1 784 CM091764.1 scf7180000184060 97.34 True local misassembly 7467162 7467787 2734 3362 CM091764.1 scf7180000184060 99.21 True relocation, scaffold gap is present, inconsistency = -15773 7452847 7464178 4195 15402 CM091764.1 scf7180000184060 97.77 True CONTIG scf7180000184060 16564 misassembled 17388137 17389778 4330 2689 CM091751.1 scf7180000184061 100.0 True CONTIG scf7180000184061 4953 correct_unaligned 9170098 9171998 1941 4 CM091762.1 scf7180000184062 98.48 True fake: scaffold gap size wrong estimation (local) 9104411 9167467 65427 2438 CM091762.1 scf7180000184062 99.33 True fake: not a misassembly (possible transposable element) 11248757 11249691 65593 66529 CM091753.1 scf7180000184062 99.69 True fake: not a misassembly (possible transposable element) 9089015 9105059 82621 66530 CM091762.1 scf7180000184062 99.23 True indel: indel (> 5bp) 8900767 9088969 270914 82622 CM091762.1 scf7180000184062 99.13 True indel: indel (> 5bp) 8872510 8900711 298833 270963 CM091762.1 scf7180000184062 97.67 True fake: scaffold gap size wrong estimation (local) 8806957 8872338 364220 298919 CM091762.1 scf7180000184062 99.36 True indel: indel (<= 5bp) 8782566 8806874 388603 364299 CM091762.1 scf7180000184062 99.19 True fake: scaffold gap size wrong estimation (local) 8772193 8782465 398953 388688 CM091762.1 scf7180000184062 99.05 True fake: scaffold gap size wrong estimation (local) 8757742 8771942 413393 399175 CM091762.1 scf7180000184062 99.31 True CONTIG scf7180000184062 413393 correct 19955819 19958990 7 3179 CM091751.1 scf7180000184063 99.69 True local misassembly 19959365 19961528 3208 5638 CM091751.1 scf7180000184063 97.2 True fake: scaffold gap size wrong estimation (local) 19963377 19965061 7356 9040 CM091751.1 scf7180000184063 98.75 True indel: indel (<= 5bp) 19965062 19966142 9042 10122 CM091751.1 scf7180000184063 99.44 True fake: scaffold gap size wrong estimation (local) 19966634 19967707 10235 11308 CM091751.1 scf7180000184063 98.88 True fake: scaffold gap size wrong estimation (local) 19969757 19973719 13180 17150 CM091751.1 scf7180000184063 99.02 True fake: scaffold gap size wrong estimation (local) 19973853 19975648 17398 19175 CM091751.1 scf7180000184063 95.98 True fake: scaffold gap size wrong estimation (local) 19976027 19977622 19387 20983 CM091751.1 scf7180000184063 98.38 True fake: scaffold gap size wrong estimation (local) 19980212 19982164 22375 24327 CM091751.1 scf7180000184063 98.82 True indel: indel (> 5bp) 19982295 19982893 24452 25050 CM091751.1 scf7180000184063 99.83 True indel: indel (<= 5bp) 19983347 19983846 25502 26001 CM091751.1 scf7180000184063 99.0 True indel: indel (<= 5bp) 19983850 19984383 26002 26535 CM091751.1 scf7180000184063 99.25 True fake: scaffold gap size wrong estimation (local) 19984776 19985975 26943 28142 CM091751.1 scf7180000184063 99.08 True indel: indel (> 5bp) 19986311 19987547 28468 29704 CM091751.1 scf7180000184063 99.43 True indel: indel (<= 5bp) 19987548 19988523 29706 30681 CM091751.1 scf7180000184063 98.77 True indel: indel (> 5bp) 19988957 19989665 31121 31829 CM091751.1 scf7180000184063 99.58 True fake: scaffold gap size wrong estimation (local) 19990179 19994299 32129 36202 CM091751.1 scf7180000184063 97.89 True fake: scaffold gap size wrong estimation (local) 19994719 19998270 36399 39964 CM091751.1 scf7180000184063 98.77 True indel: indel (> 5bp) 19998320 20004048 40061 45819 CM091751.1 scf7180000184063 99.1 True fake: scaffold gap size wrong estimation (local) 20004771 20013170 46300 54478 CM091751.1 scf7180000184063 96.85 True fake: scaffold gap size wrong estimation (local) 20013777 20019634 54984 60848 CM091751.1 scf7180000184063 99.22 True fake: scaffold gap size wrong estimation (local) 20020085 20021441 61302 62658 CM091751.1 scf7180000184063 99.71 True indel: indel (<= 5bp) 20021446 20022882 62659 64095 CM091751.1 scf7180000184063 99.37 True indel: indel (<= 5bp) 20022883 20023761 64097 64975 CM091751.1 scf7180000184063 99.54 True indel: indel (<= 5bp) 20024057 20024730 65269 65942 CM091751.1 scf7180000184063 99.55 True fake: scaffold gap size wrong estimation (local) 20025839 20026783 66710 67654 CM091751.1 scf7180000184063 98.84 True indel: indel (> 5bp) 20026897 20030245 67760 71108 CM091751.1 scf7180000184063 99.11 True indel: indel (> 5bp) 20030358 20033588 71230 74456 CM091751.1 scf7180000184063 98.12 True indel: indel (<= 5bp) 20033784 20054576 74654 95195 CM091751.1 scf7180000184063 98.06 True fake: scaffold gap size wrong estimation (local) 20055539 20063506 96165 104115 CM091751.1 scf7180000184063 98.57 True fake: scaffold gap size wrong estimation (local) 20063782 20066048 104423 106705 CM091751.1 scf7180000184063 99.07 True CONTIG scf7180000184063 106705 correct 7483059 7486265 3245 40 CM091751.1 scf7180000184064 99.08 True translocation 6993812 7067954 3246 77440 CM091764.1 scf7180000184064 99.32 True fake: scaffold gap size wrong estimation (local) 7068206 7433154 77597 441911 CM091764.1 scf7180000184064 99.23 True fake: scaffold gap size wrong estimation (local) 7435428 7436054 444014 444640 CM091764.1 scf7180000184064 98.56 True local misassembly 7440534 7441608 444641 445715 CM091764.1 scf7180000184064 96.0 True indel: indel (<= 5bp) 7441609 7443127 445721 447239 CM091764.1 scf7180000184064 100.0 True indel: indel (<= 5bp) 7443128 7444645 447241 448758 CM091764.1 scf7180000184064 99.87 True indel: indel (<= 5bp) 7444646 7446994 448760 451108 CM091764.1 scf7180000184064 99.87 True indel: indel (<= 5bp) 7446995 7449719 451110 453834 CM091764.1 scf7180000184064 99.74 True indel: indel (<= 5bp) 7449720 7451747 453836 455863 CM091764.1 scf7180000184064 99.51 True indel: indel (<= 5bp) 7451928 7452459 456046 456577 CM091764.1 scf7180000184064 98.31 True relocation, scaffold gap is present, inconsistency = 17214 7470802 7503541 457706 490409 CM091764.1 scf7180000184064 99.54 True fake: scaffold gap size wrong estimation (local) 7503704 7513390 490556 500177 CM091764.1 scf7180000184064 99.16 True fake: scaffold gap size wrong estimation (local) 7517114 7519111 501331 503328 CM091764.1 scf7180000184064 99.95 True indel: indel (<= 5bp) 7519117 7520914 503329 505126 CM091764.1 scf7180000184064 98.78 True fake: scaffold gap size wrong estimation (local) 7520915 7521939 505749 506773 CM091764.1 scf7180000184064 99.22 True relocation, inconsistency = 7356 7529296 7532280 506774 509758 CM091764.1 scf7180000184064 98.66 True fake: scaffold gap size wrong estimation (local) 7532512 7548151 509851 524717 CM091764.1 scf7180000184064 95.01 True local misassembly 7548750 7634686 525616 611568 CM091764.1 scf7180000184064 99.73 True fake: scaffold gap size wrong estimation (local) 7636799 7814582 612793 790564 CM091764.1 scf7180000184064 99.47 True fake: scaffold gap size wrong estimation (local) 7814778 7833709 790696 809051 CM091764.1 scf7180000184064 96.13 True fake: scaffold gap size wrong estimation (local) 7833825 7848027 809167 823333 CM091764.1 scf7180000184064 99.21 True fake: scaffold gap size wrong estimation (local) 7848178 8196205 823528 1171331 CM091764.1 scf7180000184064 99.17 True fake: scaffold gap size wrong estimation (local) 8196930 8466093 1171835 1440961 CM091764.1 scf7180000184064 99.28 True fake: scaffold gap size wrong estimation (local) 8466384 8514291 1441247 1489225 CM091764.1 scf7180000184064 99.27 True fake: scaffold gap size wrong estimation (local) 8514445 8580875 1489339 1555797 CM091764.1 scf7180000184064 99.45 True fake: scaffold gap size wrong estimation (local) 8581069 8623028 1555939 1597980 CM091764.1 scf7180000184064 99.53 True fake: scaffold gap size wrong estimation (local) 8623239 8644960 1598080 1619822 CM091764.1 scf7180000184064 99.36 True fake: scaffold gap size wrong estimation (local) 8645138 8703942 1619951 1678838 CM091764.1 scf7180000184064 99.48 True CONTIG scf7180000184064 1678838 misassembled 14152222 14156508 4286 1 CM091757.1 scf7180000184065 99.98 True fake: not a misassembly (possible transposable element) 6624037 6625198 5441 4287 CM091760.1 scf7180000184065 99.09 True fake: not a misassembly (possible transposable element) 14147599 14151654 9515 5462 CM091757.1 scf7180000184065 99.68 True local misassembly 14022886 14147222 134108 9676 CM091757.1 scf7180000184065 99.43 True indel: indel (<= 5bp) 14001994 14022848 155037 134147 CM091757.1 scf7180000184065 99.55 True CONTIG scf7180000184065 155037 correct 3152659 3154496 1837 1 CM091758.1 scf7180000184066 99.78 True translocation 6419576 6430732 1849 12972 CM091767.1 scf7180000184066 99.46 True relocation, inconsistency = 36875 6467967 6571191 13332 116445 CM091767.1 scf7180000184066 99.69 True translocation, scaffold gap is present 4225664 4228793 122820 119690 CM091754.1 scf7180000184066 99.9 True relocation, scaffold gap is present, inconsistency = 12790 4210053 4212370 125640 123324 CM091754.1 scf7180000184066 99.96 True fake: scaffold gap size wrong estimation (local) 4205397 4208743 129908 126562 CM091754.1 scf7180000184066 99.97 True fake: scaffold gap size wrong estimation (local) 4203021 4204319 132259 130961 CM091754.1 scf7180000184066 99.85 True CONTIG scf7180000184066 132881 misassembled 5712221 5752295 41975 1522 CM091764.1 scf7180000184067 98.65 True fake: scaffold gap size wrong estimation (local) 5683727 5711581 70171 42328 CM091764.1 scf7180000184067 99.67 True fake: scaffold gap size wrong estimation (local) 5432539 5683467 321549 70341 CM091764.1 scf7180000184067 99.23 True fake: scaffold gap size wrong estimation (local) 5426768 5431821 327246 322211 CM091764.1 scf7180000184067 99.05 True relocation, scaffold gap is present, inconsistency = 32586 5392592 5393974 327454 328815 CM091764.1 scf7180000184067 97.47 True CONTIG scf7180000184067 328815 misassembled 7981472 7982183 704 1 CM091767.1 scf7180000184068 98.74 True fake: not a misassembly (possible transposable element) 7994164 7995923 1188 2947 CM091767.1 scf7180000184068 99.94 True fake: not a misassembly (possible transposable element) 7979913 7980513 3569 2969 CM091767.1 scf7180000184068 96.34 True fake: scaffold gap size wrong estimation (local) 7978332 7979272 5053 4113 CM091767.1 scf7180000184068 100.0 True indel: indel (<= 5bp) 7976973 7978330 6411 5054 CM091767.1 scf7180000184068 100.0 True fake: scaffold gap size wrong estimation (local) 7974713 7976256 8333 6790 CM091767.1 scf7180000184068 99.81 True fake: scaffold gap size wrong estimation (local) 7970651 7974070 11972 8567 CM091767.1 scf7180000184068 99.56 True fake: scaffold gap size wrong estimation (local) 7969809 7970503 12816 12122 CM091767.1 scf7180000184068 99.86 True fake: scaffold gap size wrong estimation (local) 7968198 7969007 14575 13766 CM091767.1 scf7180000184068 99.75 True CONTIG scf7180000184068 14575 correct 2942259 2942879 3003 2383 CM091754.1 scf7180000184069 95.17 True local misassembly 2937774 2939900 6545 4419 CM091754.1 scf7180000184069 99.53 True fake: not a misassembly (possible transposable element) 12841708 12842678 7537 6567 CM091754.1 scf7180000184069 99.07 True fake: not a misassembly (possible transposable element) 2935773 2937624 9448 7590 CM091754.1 scf7180000184069 97.08 True fake: scaffold gap size wrong estimation (local) 2934066 2934706 10839 10199 CM091754.1 scf7180000184069 99.84 True local misassembly 2931942 2932546 12973 12369 CM091754.1 scf7180000184069 99.17 True indel: indel (> 5bp) 2930714 2931495 14188 13407 CM091754.1 scf7180000184069 99.23 True local misassembly 2928949 2930049 15959 14859 CM091754.1 scf7180000184069 99.36 True local misassembly 2925894 2927647 18389 16636 CM091754.1 scf7180000184069 99.14 True fake: scaffold gap size wrong estimation (local) 2921455 2925240 22504 18697 CM091754.1 scf7180000184069 98.61 True fake: scaffold gap size wrong estimation (local) 2919710 2920981 24098 22826 CM091754.1 scf7180000184069 97.59 True fake: scaffold gap size wrong estimation (local) 2918146 2919119 25371 24398 CM091754.1 scf7180000184069 99.08 True indel: indel (> 5bp) 2916938 2918145 26602 25395 CM091754.1 scf7180000184069 99.75 True local misassembly 2915220 2916732 28115 26603 CM091754.1 scf7180000184069 99.54 True indel: indel (<= 5bp) 2913267 2915219 30069 28117 CM091754.1 scf7180000184069 99.59 True indel: indel (> 5bp) 2912230 2913231 31100 30099 CM091754.1 scf7180000184069 99.6 True fake: scaffold gap size wrong estimation (local) 2910986 2911984 32140 31142 CM091754.1 scf7180000184069 99.5 True fake: scaffold gap size wrong estimation (local) 2909548 2910851 33561 32255 CM091754.1 scf7180000184069 99.08 True local misassembly 2902292 2909299 40710 33711 CM091754.1 scf7180000184069 98.52 True fake: scaffold gap size wrong estimation (local) 2900660 2901371 42804 42093 CM091754.1 scf7180000184069 100.0 True indel: indel (<= 5bp) 2899041 2900409 44422 43054 CM091754.1 scf7180000184069 98.61 True indel: indel (<= 5bp) 2898235 2898872 45229 44592 CM091754.1 scf7180000184069 99.84 True local misassembly 2896865 2897426 46598 46037 CM091754.1 scf7180000184069 100.0 True fake: scaffold gap size wrong estimation (local) 2891594 2893768 51047 48873 CM091754.1 scf7180000184069 99.77 True indel: indel (<= 5bp) 2890564 2891592 52076 51048 CM091754.1 scf7180000184069 99.81 True indel: indel (<= 5bp) 2889352 2890563 53289 52078 CM091754.1 scf7180000184069 100.0 True indel: indel (<= 5bp) 2886930 2889351 55712 53291 CM091754.1 scf7180000184069 99.71 True indel: indel (<= 5bp) 2886023 2886546 56621 56098 CM091754.1 scf7180000184069 99.43 True fake: scaffold gap size wrong estimation (local) 2882034 2882560 60059 59533 CM091754.1 scf7180000184069 99.62 True indel: indel (> 5bp) 2881018 2882013 61055 60060 CM091754.1 scf7180000184069 99.0 True indel: indel (<= 5bp) 2880341 2881017 61733 61057 CM091754.1 scf7180000184069 99.41 True indel: indel (> 5bp) 2879125 2880322 62955 61758 CM091754.1 scf7180000184069 99.83 True fake: scaffold gap size wrong estimation (local) 2876355 2878191 65314 63478 CM091754.1 scf7180000184069 98.86 True indel: indel (<= 5bp) 2874954 2875943 66712 65723 CM091754.1 scf7180000184069 98.99 True indel: stretch of mismatches 2874439 2874944 67227 66722 CM091754.1 scf7180000184069 99.8 True local misassembly 2871558 2872281 70110 69387 CM091754.1 scf7180000184069 99.72 True local misassembly 2869307 2870911 72393 70789 CM091754.1 scf7180000184069 99.56 True indel: indel (<= 5bp) 2868739 2869302 72965 72402 CM091754.1 scf7180000184069 99.65 True indel: indel (<= 5bp) 2867497 2868737 74206 72966 CM091754.1 scf7180000184069 99.36 True indel: indel (> 5bp) 2866570 2867188 75157 74539 CM091754.1 scf7180000184069 98.38 True indel: indel (<= 5bp) 2866066 2866568 75660 75158 CM091754.1 scf7180000184069 98.41 True local misassembly 2862849 2864108 77810 76551 CM091754.1 scf7180000184069 98.33 True local misassembly 2859319 2862083 80575 77811 CM091754.1 scf7180000184069 99.39 True fake: scaffold gap size wrong estimation (local) 2857334 2858712 82394 81016 CM091754.1 scf7180000184069 99.2 True indel: indel (> 5bp) 2856276 2856989 83437 82724 CM091754.1 scf7180000184069 96.36 True fake: scaffold gap size wrong estimation (local) 2854852 2856074 84786 83564 CM091754.1 scf7180000184069 99.43 True fake: scaffold gap size wrong estimation (local) 2853801 2854406 85852 85208 CM091754.1 scf7180000184069 97.72 True fake: scaffold gap size wrong estimation (local) 2850275 2851139 88753 87889 CM091754.1 scf7180000184069 99.77 True indel: indel (<= 5bp) 2849611 2850274 89418 88755 CM091754.1 scf7180000184069 99.85 True fake: scaffold gap size wrong estimation (local) 2845718 2848638 93061 90141 CM091754.1 scf7180000184069 99.79 True indel: indel (<= 5bp) 2844681 2845716 94097 93062 CM091754.1 scf7180000184069 99.03 True indel: indel (> 5bp) 2842656 2844636 96078 94098 CM091754.1 scf7180000184069 99.95 True indel: indel (<= 5bp) 2841349 2842654 97384 96079 CM091754.1 scf7180000184069 99.92 True indel: indel (<= 5bp) 2840379 2841005 98352 97726 CM091754.1 scf7180000184069 99.84 True indel: indel (<= 5bp) 2837950 2840363 100785 98372 CM091754.1 scf7180000184069 99.67 True indel: indel (<= 5bp) 2837078 2837615 101653 101116 CM091754.1 scf7180000184069 100.0 True indel: indel (<= 5bp) 2834962 2837076 103768 101654 CM091754.1 scf7180000184069 99.76 True indel: indel (<= 5bp) 2832422 2834961 106309 103770 CM091754.1 scf7180000184069 99.76 True indel: indel (<= 5bp) 2829682 2832421 109050 106311 CM091754.1 scf7180000184069 99.42 True fake: scaffold gap size wrong estimation (local) 2823115 2827545 114709 110261 CM091754.1 scf7180000184069 99.21 True fake: scaffold gap size wrong estimation (local) 2804804 2822967 132434 114843 CM091754.1 scf7180000184069 95.53 True fake: scaffold gap size wrong estimation (local) 2795634 2804668 141420 132527 CM091754.1 scf7180000184069 97.08 True fake: scaffold gap size wrong estimation (local) 2788382 2795437 148372 141601 CM091754.1 scf7180000184069 95.3 True fake: scaffold gap size wrong estimation (local) 2758187 2788079 177555 148534 CM091754.1 scf7180000184069 96.4 True local misassembly 2756415 2757533 179086 177968 CM091754.1 scf7180000184069 99.46 True fake: scaffold gap size wrong estimation (local) 2753578 2754468 181347 180457 CM091754.1 scf7180000184069 98.09 True fake: scaffold gap size wrong estimation (local) 2752309 2752989 182682 182002 CM091754.1 scf7180000184069 99.71 True fake: scaffold gap size wrong estimation (local) 2750170 2751272 183961 182859 CM091754.1 scf7180000184069 99.27 True local misassembly 2748320 2749300 185212 184232 CM091754.1 scf7180000184069 99.29 True indel: indel (<= 5bp) 2747645 2748317 185885 185213 CM091754.1 scf7180000184069 98.51 True fake: scaffold gap size wrong estimation (local) 2745092 2746080 188235 187247 CM091754.1 scf7180000184069 99.39 True fake: scaffold gap size wrong estimation (local) 2743162 2743919 189655 188898 CM091754.1 scf7180000184069 99.34 True local misassembly 2739899 2740740 192303 191462 CM091754.1 scf7180000184069 99.17 True fake: scaffold gap size wrong estimation (local) 2737476 2738368 194653 193761 CM091754.1 scf7180000184069 98.77 True fake: scaffold gap size wrong estimation (local) 2733314 2733846 197830 197298 CM091754.1 scf7180000184069 99.44 True local misassembly 2728973 2731487 202147 199596 CM091754.1 scf7180000184069 97.3 True CONTIG scf7180000184069 202147 correct 3516573 3526609 13236 3222 CM091759.1 scf7180000184070 99.3 True fake: scaffold gap size wrong estimation (local) 3512144 3516308 17589 13453 CM091759.1 scf7180000184070 98.68 True fake: scaffold gap size wrong estimation (local) 3457626 3511817 72078 17928 CM091759.1 scf7180000184070 99.37 True fake: scaffold gap size wrong estimation (local) 3442293 3457412 87344 72256 CM091759.1 scf7180000184070 99.18 True fake: scaffold gap size wrong estimation (local) 3395088 3442141 134570 87464 CM091759.1 scf7180000184070 99.77 True fake: scaffold gap size wrong estimation (local) 3374087 3394752 155357 134681 CM091759.1 scf7180000184070 99.87 True fake: scaffold gap size wrong estimation (local) 3354495 3373879 174946 155543 CM091759.1 scf7180000184070 99.77 True fake: scaffold gap size wrong estimation (local) 3350268 3354276 179101 175092 CM091759.1 scf7180000184070 99.63 True CONTIG scf7180000184070 179101 correct 226295 226880 1 586 CM091753.1 scf7180000184071 99.83 True fake: scaffold gap size wrong estimation (local) 227363 228056 1240 1933 CM091753.1 scf7180000184071 99.42 True fake: scaffold gap size wrong estimation (local) 228057 231205 2335 5483 CM091753.1 scf7180000184071 99.46 True fake: scaffold gap size wrong estimation (local) 231539 235023 6170 9654 CM091753.1 scf7180000184071 99.91 True local misassembly 235349 240528 9655 14834 CM091753.1 scf7180000184071 99.56 True fake: scaffold gap size wrong estimation (local) 242679 244864 16009 18194 CM091753.1 scf7180000184071 99.04 True fake: scaffold gap size wrong estimation (local) 245616 246338 18356 19078 CM091753.1 scf7180000184071 96.54 True fake: scaffold gap size wrong estimation (local) 246339 247932 19101 20694 CM091753.1 scf7180000184071 100.0 True fake: scaffold gap size wrong estimation (local) 248378 249202 21311 22135 CM091753.1 scf7180000184071 99.88 True indel: indel (<= 5bp) 249204 253796 22136 26728 CM091753.1 scf7180000184071 99.78 True CONTIG scf7180000184071 28658 correct 520448 522850 2469 77 CM091764.1 scf7180000184072 99.33 True fake: scaffold gap size wrong estimation (local) 517546 518580 5459 4425 CM091764.1 scf7180000184072 97.87 True local misassembly 516211 516837 6465 5839 CM091764.1 scf7180000184072 100.0 True fake: scaffold gap size wrong estimation (local) 505549 515131 16692 7094 CM091764.1 scf7180000184072 99.3 True fake: scaffold gap size wrong estimation (local) 500268 505270 21941 16823 CM091764.1 scf7180000184072 98.35 True fake: scaffold gap size wrong estimation (local) 495548 499308 26151 22391 CM091764.1 scf7180000184072 99.55 True fake: scaffold gap size wrong estimation (local) 493057 495378 28660 26339 CM091764.1 scf7180000184072 99.14 True local misassembly 489487 490863 30037 28661 CM091764.1 scf7180000184072 99.93 True indel: indel (<= 5bp) 488514 489486 31011 30039 CM091764.1 scf7180000184072 99.9 True indel: indel (> 5bp) 487038 488513 32493 31018 CM091764.1 scf7180000184072 99.25 True indel: indel (> 5bp) 483271 487037 36269 32503 CM091764.1 scf7180000184072 99.55 True indel: indel (<= 5bp) 477968 483270 41574 36272 CM091764.1 scf7180000184072 99.02 True fake: scaffold gap size wrong estimation (local) 467493 477029 51583 42047 CM091764.1 scf7180000184072 99.96 True fake: scaffold gap size wrong estimation (local) 454749 467378 64312 51689 CM091764.1 scf7180000184072 99.86 True fake: scaffold gap size wrong estimation (local) 452187 454374 66810 64611 CM091764.1 scf7180000184072 99.86 True CONTIG scf7180000184072 66810 correct 15591088 15591590 699 197 CM091759.1 scf7180000184073 99.6 True fake: scaffold gap size wrong estimation (local) 15518612 15590673 72922 1413 CM091759.1 scf7180000184073 99.02 True fake: scaffold gap size wrong estimation (local) 15515459 15516346 74760 73873 CM091759.1 scf7180000184073 100.0 True fake: scaffold gap size wrong estimation (local) 15513213 15514973 77479 75718 CM091759.1 scf7180000184073 99.94 True fake: scaffold gap size wrong estimation (local) 15509262 15512301 81047 77976 CM091759.1 scf7180000184073 99.54 True fake: scaffold gap size wrong estimation (local) 15477114 15508751 112914 81340 CM091759.1 scf7180000184073 99.62 True fake: scaffold gap size wrong estimation (local) 15464097 15476305 125577 113346 CM091759.1 scf7180000184073 99.86 True fake: scaffold gap size wrong estimation (local) 15218855 15464009 371235 126264 CM091759.1 scf7180000184073 99.38 True fake: scaffold gap size wrong estimation (local) 14900333 15218803 690527 371306 CM091759.1 scf7180000184073 99.44 True indel: indel (> 5bp) 14736401 14900186 854348 690660 CM091759.1 scf7180000184073 99.45 True fake: scaffold gap size wrong estimation (local) 14722501 14736265 868198 854443 CM091759.1 scf7180000184073 99.5 True local misassembly 14224236 14721807 1366798 868917 CM091759.1 scf7180000184073 99.54 True fake: scaffold gap size wrong estimation (local) 14203718 14223862 1387095 1366914 CM091759.1 scf7180000184073 99.45 True CONTIG scf7180000184073 1387128 correct 6424593 6523977 1 99627 CM091763.1 scf7180000184074 99.56 True fake: scaffold gap size wrong estimation (local) 6524185 6545277 99801 120904 CM091763.1 scf7180000184074 99.98 True relocation, inconsistency = 40019 6585297 6636986 120905 172594 CM091763.1 scf7180000184074 99.99 True fake: scaffold gap size wrong estimation (local) 6637141 6741914 173352 277880 CM091763.1 scf7180000184074 99.24 True indel: indel (> 5bp) 6741963 6843454 277942 379451 CM091763.1 scf7180000184074 99.54 True fake: scaffold gap size wrong estimation (local) 6844876 6845657 381077 381858 CM091763.1 scf7180000184074 99.23 True fake: scaffold gap size wrong estimation (local) 6848492 6891965 383049 426555 CM091763.1 scf7180000184074 99.76 True indel: indel (> 5bp) 6892085 6926833 426686 461441 CM091763.1 scf7180000184074 99.7 True local misassembly 6927866 6936734 462425 471279 CM091763.1 scf7180000184074 99.49 True indel: indel (<= 5bp) 6936775 6995965 471325 530578 CM091763.1 scf7180000184074 99.38 True indel: indel (<= 5bp) 6996142 7139414 530750 673980 CM091763.1 scf7180000184074 99.12 True CONTIG scf7180000184074 675486 misassembled 8841267 8879650 47 38439 CM091766.1 scf7180000184075 99.65 True fake: scaffold gap size wrong estimation (local) 8879967 8885039 38667 43739 CM091766.1 scf7180000184075 99.92 True fake: scaffold gap size wrong estimation (local) 8886143 8978942 44125 136783 CM091766.1 scf7180000184075 99.77 True local misassembly 8979484 8980035 137169 137720 CM091766.1 scf7180000184075 98.21 True local misassembly 8983063 9280558 137721 434676 CM091766.1 scf7180000184075 99.15 True indel: indel (<= 5bp) 9280584 9314148 434707 468263 CM091766.1 scf7180000184075 99.8 True CONTIG scf7180000184075 468263 correct 13758466 13763154 11 4681 CM091755.1 scf7180000184076 99.25 True fake: scaffold gap size wrong estimation (local) 13763292 13786684 4789 27970 CM091755.1 scf7180000184076 98.55 True fake: scaffold gap size wrong estimation (local) 13787583 13799644 28434 40204 CM091755.1 scf7180000184076 95.77 True fake: scaffold gap size wrong estimation (local) 13801638 13963536 41160 202548 CM091755.1 scf7180000184076 98.68 True fake: scaffold gap size wrong estimation (local) 13964058 13968661 202669 207261 CM091755.1 scf7180000184076 98.0 True fake: scaffold gap size wrong estimation (local) 13968897 13971088 207457 209658 CM091755.1 scf7180000184076 99.27 True fake: scaffold gap size wrong estimation (local) 13971995 13973391 210248 211645 CM091755.1 scf7180000184076 99.29 True fake: scaffold gap size wrong estimation (local) 13973578 13995820 211846 234531 CM091755.1 scf7180000184076 97.73 True fake: scaffold gap size wrong estimation (local) 13996315 14001948 235041 240647 CM091755.1 scf7180000184076 98.69 True fake: scaffold gap size wrong estimation (local) 14002031 14018037 240768 256966 CM091755.1 scf7180000184076 98.28 True fake: scaffold gap size wrong estimation (local) 14018273 14020074 257099 258909 CM091755.1 scf7180000184076 99.22 True fake: scaffold gap size wrong estimation (local) 14020150 14076776 258979 316715 CM091755.1 scf7180000184076 96.03 True fake: scaffold gap size wrong estimation (local) 14077094 14098907 316805 338636 CM091755.1 scf7180000184076 99.32 True fake: scaffold gap size wrong estimation (local) 14099579 14107131 338997 346530 CM091755.1 scf7180000184076 99.15 True fake: scaffold gap size wrong estimation (local) 14107599 14108134 346637 347172 CM091755.1 scf7180000184076 99.25 True local misassembly 14108585 14109642 347200 348257 CM091755.1 scf7180000184076 99.05 True indel: indel (<= 5bp) 14109643 14111240 348261 349858 CM091755.1 scf7180000184076 99.62 True indel: indel (<= 5bp) 14111245 14113543 349859 352157 CM091755.1 scf7180000184076 99.35 True indel: indel (<= 5bp) 14113545 14114686 352158 353299 CM091755.1 scf7180000184076 99.65 True local misassembly 14115229 14115853 353544 354168 CM091755.1 scf7180000184076 97.6 True fake: scaffold gap size wrong estimation (local) 14116032 14116877 354351 355196 CM091755.1 scf7180000184076 99.65 True indel: indel (<= 5bp) 14116878 14117604 355198 355924 CM091755.1 scf7180000184076 99.72 True indel: stretch of mismatches 14117873 14118858 356193 357178 CM091755.1 scf7180000184076 99.39 True indel: indel (<= 5bp) 14118960 14119502 357277 357819 CM091755.1 scf7180000184076 100.0 True indel: stretch of mismatches 14119653 14121037 357970 359354 CM091755.1 scf7180000184076 99.86 True indel: indel (<= 5bp) 14121039 14121898 359355 360214 CM091755.1 scf7180000184076 99.53 True fake: scaffold gap size wrong estimation (local) 14122025 14132955 360341 371386 CM091755.1 scf7180000184076 98.04 True fake: scaffold gap size wrong estimation (local) 14133367 14142889 371809 381371 CM091755.1 scf7180000184076 98.76 True fake: scaffold gap size wrong estimation (local) 14143707 14148500 381850 386644 CM091755.1 scf7180000184076 99.35 True local misassembly 14148877 14154005 386737 391862 CM091755.1 scf7180000184076 99.11 True local misassembly 14155781 14156901 392815 393935 CM091755.1 scf7180000184076 99.64 True fake: scaffold gap size wrong estimation (local) 14157526 14158297 394348 395119 CM091755.1 scf7180000184076 99.35 True fake: scaffold gap size wrong estimation (local) 14158409 14159019 395576 396186 CM091755.1 scf7180000184076 99.18 True indel: indel (<= 5bp) 14159021 14160101 396187 397267 CM091755.1 scf7180000184076 99.91 True indel: indel (<= 5bp) 14160105 14161200 397268 398363 CM091755.1 scf7180000184076 99.82 True translocation 3828147 3830180 400651 398627 CM091766.1 scf7180000184076 99.07 True CONTIG scf7180000184076 400651 misassembled 11819275 11835424 17713 1572 CM091763.1 scf7180000184077 99.8 True fake: not a misassembly (possible transposable element) 7109732 7111013 18999 17714 CM091762.1 scf7180000184077 99.54 True fake: not a misassembly (possible transposable element) 11526991 11819174 311273 19020 CM091763.1 scf7180000184077 98.48 True fake: scaffold gap size wrong estimation (local) 11456286 11526915 382337 311327 CM091763.1 scf7180000184077 98.62 True fake: scaffold gap size wrong estimation (local) 11451947 11456175 386575 382453 CM091763.1 scf7180000184077 96.18 True fake: scaffold gap size wrong estimation (local) 11315116 11451450 523061 386981 CM091763.1 scf7180000184077 99.06 True fake: scaffold gap size wrong estimation (local) 10791743 11314987 1046219 523187 CM091763.1 scf7180000184077 99.41 True indel: indel (<= 5bp) 10709352 10791659 1128647 1046300 CM091763.1 scf7180000184077 99.58 True indel: indel (<= 5bp) 10417878 10709300 1420235 1128698 CM091763.1 scf7180000184077 99.38 True fake: scaffold gap size wrong estimation (local) 10406624 10417687 1431473 1420386 CM091763.1 scf7180000184077 98.95 True CONTIG scf7180000184077 1431490 correct 9129211 9129741 531 1 CM091756.1 scf7180000184078 98.68 True fake: scaffold gap size wrong estimation (local) 9125511 9126322 3686 2875 CM091756.1 scf7180000184078 99.26 True fake: scaffold gap size wrong estimation (local) 9123401 9125368 5800 3833 CM091756.1 scf7180000184078 99.34 True fake: scaffold gap size wrong estimation (local) 9119573 9122710 9340 6181 CM091756.1 scf7180000184078 98.16 True fake: scaffold gap size wrong estimation (local) 9115160 9119345 13713 9535 CM091756.1 scf7180000184078 98.98 True fake: scaffold gap size wrong estimation (local) 9113424 9114661 15018 13781 CM091756.1 scf7180000184078 98.47 True indel: indel (<= 5bp) 9111619 9113423 16828 15024 CM091756.1 scf7180000184078 99.56 True fake: scaffold gap size wrong estimation (local) 9110517 9111037 17961 17441 CM091756.1 scf7180000184078 99.42 True indel: indel (<= 5bp) 9110012 9110515 18465 17962 CM091756.1 scf7180000184078 99.01 True local misassembly 9108031 9109277 20440 19194 CM091756.1 scf7180000184078 99.2 True local misassembly 9105870 9107000 22209 21079 CM091756.1 scf7180000184078 99.47 True indel: indel (> 5bp) 9104708 9105413 23381 22676 CM091756.1 scf7180000184078 99.58 True local misassembly 9103320 9104392 24651 23579 CM091756.1 scf7180000184078 99.44 True indel: indel (<= 5bp) 9102588 9103318 25382 24652 CM091756.1 scf7180000184078 99.59 True fake: scaffold gap size wrong estimation (local) 9085539 9102345 42273 25623 CM091756.1 scf7180000184078 97.81 True fake: scaffold gap size wrong estimation (local) 9084190 9085348 43578 42412 CM091756.1 scf7180000184078 98.89 True local misassembly 9021206 9082072 106275 45441 CM091756.1 scf7180000184078 99.36 True fake: scaffold gap size wrong estimation (local) 9013720 9021010 113469 106392 CM091756.1 scf7180000184078 96.43 True fake: not a misassembly (possible transposable element) 11488216 11490017 113470 115271 CM091760.1 scf7180000184078 99.68 True fake: not a misassembly (possible transposable element) 9010508 9011258 116045 115296 CM091756.1 scf7180000184078 98.14 True fake: scaffold gap size wrong estimation (local) 9008827 9009890 117999 116936 CM091756.1 scf7180000184078 98.78 True local misassembly 9000996 9008015 125530 118488 CM091756.1 scf7180000184078 98.99 True local misassembly 8995337 9000390 130851 125814 CM091756.1 scf7180000184078 97.58 True fake: scaffold gap size wrong estimation (local) 8992072 8994746 133891 131201 CM091756.1 scf7180000184078 98.26 True fake: scaffold gap size wrong estimation (local) 8989185 8991618 137005 134571 CM091756.1 scf7180000184078 98.93 True fake: scaffold gap size wrong estimation (local) 8986179 8989060 140290 137376 CM091756.1 scf7180000184078 98.32 True fake: scaffold gap size wrong estimation (local) 8963250 8985908 162469 140411 CM091756.1 scf7180000184078 96.25 True fake: scaffold gap size wrong estimation (local) 8940834 8963022 184493 162657 CM091756.1 scf7180000184078 97.37 True fake: scaffold gap size wrong estimation (local) 8871543 8940580 253541 184694 CM091756.1 scf7180000184078 99.11 True indel: indel (> 5bp) 8851958 8871341 273191 253728 CM091756.1 scf7180000184078 98.96 True indel: indel (<= 5bp) 8803999 8851929 321087 273218 CM091756.1 scf7180000184078 99.08 True fake: scaffold gap size wrong estimation (local) 8795710 8802934 329117 321872 CM091756.1 scf7180000184078 99.54 True fake: scaffold gap size wrong estimation (local) 8753950 8795497 370799 329278 CM091756.1 scf7180000184078 99.79 True fake: scaffold gap size wrong estimation (local) 8722804 8753607 401688 370931 CM091756.1 scf7180000184078 99.52 True indel: indel (<= 5bp) 8626914 8722725 497606 401770 CM091756.1 scf7180000184078 99.51 True fake: not a misassembly (possible transposable element) 9907002 9908301 499264 497965 CM091755.1 scf7180000184078 99.85 True fake: not a misassembly (possible transposable element) 8423438 8626822 700275 499285 CM091756.1 scf7180000184078 98.28 True indel: indel (> 5bp) 8418802 8423257 704886 700438 CM091756.1 scf7180000184078 99.33 True fake: scaffold gap size wrong estimation (local) 8417367 8418559 706289 705097 CM091756.1 scf7180000184078 99.08 True indel: indel (<= 5bp) 8416836 8417365 706819 706290 CM091756.1 scf7180000184078 99.81 True local misassembly 8414494 8415331 708621 707784 CM091756.1 scf7180000184078 99.64 True indel: indel (<= 5bp) 8413443 8414493 709676 708626 CM091756.1 scf7180000184078 99.14 True indel: indel (<= 5bp) 8412535 8413442 710585 709678 CM091756.1 scf7180000184078 99.78 True indel: indel (> 5bp) 8410473 8412425 712654 710702 CM091756.1 scf7180000184078 99.28 True indel: indel (<= 5bp) 8409886 8410472 713242 712656 CM091756.1 scf7180000184078 98.98 True indel: indel (<= 5bp) 8409339 8409885 713790 713244 CM091756.1 scf7180000184078 99.45 True indel: indel (<= 5bp) 8408732 8409263 714393 713862 CM091756.1 scf7180000184078 99.06 True indel: indel (<= 5bp) 8407836 8408368 715291 714759 CM091756.1 scf7180000184078 97.94 True indel: indel (> 5bp) 8406719 8407724 716398 715393 CM091756.1 scf7180000184078 99.2 True local misassembly 8405189 8406217 717939 716911 CM091756.1 scf7180000184078 99.51 True local misassembly 8402607 8403568 720168 719207 CM091756.1 scf7180000184078 99.38 True indel: indel (<= 5bp) 8402028 8402589 720750 720189 CM091756.1 scf7180000184078 99.29 True indel: indel (> 5bp) 8400186 8401922 722601 720865 CM091756.1 scf7180000184078 99.6 True indel: indel (<= 5bp) 8399454 8400184 723332 722602 CM091756.1 scf7180000184078 99.59 True indel: indel (<= 5bp) 8397812 8399384 724976 723404 CM091756.1 scf7180000184078 99.75 True local misassembly 8395568 8396393 727224 726399 CM091756.1 scf7180000184078 99.64 True fake: scaffold gap size wrong estimation (local) 8393634 8394217 728882 728299 CM091756.1 scf7180000184078 100.0 True fake: scaffold gap size wrong estimation (local) 8392175 8393205 730359 729329 CM091756.1 scf7180000184078 99.61 True local misassembly 8389766 8390619 732438 731585 CM091756.1 scf7180000184078 99.41 True fake: scaffold gap size wrong estimation (local) 8386076 8389234 736544 733391 CM091756.1 scf7180000184078 98.92 True local misassembly 8383339 8384882 738900 737357 CM091756.1 scf7180000184078 98.38 True indel: stretch of mismatches 8380430 8383220 741809 739019 CM091756.1 scf7180000184078 99.57 True fake: scaffold gap size wrong estimation (local) 8379665 8380211 742592 742046 CM091756.1 scf7180000184078 99.63 True indel: indel (> 5bp) 8378472 8379229 743772 743015 CM091756.1 scf7180000184078 99.74 True fake: scaffold gap size wrong estimation (local) 8377151 8377993 744890 744048 CM091756.1 scf7180000184078 99.64 True indel: indel (<= 5bp) 8376512 8377150 745530 744892 CM091756.1 scf7180000184078 99.37 True indel: indel (<= 5bp) 8374945 8376162 747099 745882 CM091756.1 scf7180000184078 99.43 True indel: indel (<= 5bp) 8373591 8374944 748454 747101 CM091756.1 scf7180000184078 99.85 True fake: scaffold gap size wrong estimation (local) 8364257 8372651 757593 749173 CM091756.1 scf7180000184078 99.0 True fake: scaffold gap size wrong estimation (local) 8351207 8364010 770605 757756 CM091756.1 scf7180000184078 98.28 True fake: not a misassembly (possible transposable element) 9001428 9002361 770626 771559 CM091754.1 scf7180000184078 99.68 True fake: not a misassembly (possible transposable element) 8340214 8350915 782256 771560 CM091756.1 scf7180000184078 98.83 True fake: scaffold gap size wrong estimation (local) 8319982 8339960 802695 782827 CM091756.1 scf7180000184078 98.12 True fake: scaffold gap size wrong estimation (local) 8180432 8319870 942156 802839 CM091756.1 scf7180000184078 99.38 True indel: indel (> 5bp) 8177142 8180389 945438 942191 CM091756.1 scf7180000184078 95.44 True local misassembly 8175025 8175660 946720 946085 CM091756.1 scf7180000184078 99.53 True indel: indel (<= 5bp) 8171434 8175024 950312 946722 CM091756.1 scf7180000184078 99.72 True indel: indel (<= 5bp) 8170330 8171135 951420 950615 CM091756.1 scf7180000184078 100.0 True indel: indel (<= 5bp) 8169074 8169849 952675 951900 CM091756.1 scf7180000184078 99.61 True fake: scaffold gap size wrong estimation (local) 8149201 8168470 972939 953232 CM091756.1 scf7180000184078 97.12 True indel: indel (> 5bp) 8148303 8149109 973781 972976 CM091756.1 scf7180000184078 99.5 True local misassembly 8125174 8147648 997053 974616 CM091756.1 scf7180000184078 99.66 True fake: scaffold gap size wrong estimation (local) 8104992 8124829 1017040 997199 CM091756.1 scf7180000184078 99.92 True fake: scaffold gap size wrong estimation (local) 8104118 8104675 1017880 1017323 CM091756.1 scf7180000184078 100.0 True indel: indel (<= 5bp) 8103293 8104117 1018706 1017882 CM091756.1 scf7180000184078 99.76 True indel: indel (<= 5bp) 8101903 8103286 1020098 1018715 CM091756.1 scf7180000184078 99.86 True indel: indel (<= 5bp) 8099682 8101901 1022318 1020099 CM091756.1 scf7180000184078 99.82 True indel: indel (<= 5bp) 8096117 8099681 1025884 1022320 CM091756.1 scf7180000184078 99.64 True indel: indel (<= 5bp) 8095082 8096114 1026917 1025885 CM091756.1 scf7180000184078 99.23 True indel: indel (<= 5bp) 8093972 8095080 1028026 1026918 CM091756.1 scf7180000184078 99.64 True indel: indel (<= 5bp) 8092669 8093971 1029330 1028028 CM091756.1 scf7180000184078 99.69 True fake: scaffold gap size wrong estimation (local) 8090961 8092668 1032746 1031039 CM091756.1 scf7180000184078 99.59 True indel: indel (<= 5bp) 8090163 8090960 1033545 1032748 CM091756.1 scf7180000184078 100.0 True indel: indel (<= 5bp) 8089536 8090162 1034173 1033547 CM091756.1 scf7180000184078 100.0 True indel: indel (<= 5bp) 8086006 8089534 1037702 1034174 CM091756.1 scf7180000184078 99.66 True indel: indel (<= 5bp) 8085396 8086005 1038314 1037705 CM091756.1 scf7180000184078 99.34 True indel: indel (<= 5bp) 8082644 8084995 1041064 1038713 CM091756.1 scf7180000184078 99.74 True local misassembly 8080112 8081895 1043599 1041816 CM091756.1 scf7180000184078 99.5 True indel: indel (> 5bp) 8071325 8080062 1052306 1043627 CM091756.1 scf7180000184078 98.31 True indel: indel (<= 5bp) 8031958 8071315 1092197 1052319 CM091756.1 scf7180000184078 97.76 True indel: indel (> 5bp) 7953373 8031915 1170752 1092273 CM091756.1 scf7180000184078 98.78 True fake: scaffold gap size wrong estimation (local) 7945261 7953217 1178824 1170839 CM091756.1 scf7180000184078 99.36 True fake: scaffold gap size wrong estimation (local) 7877678 7945170 1246368 1178901 CM091756.1 scf7180000184078 99.04 True fake: scaffold gap size wrong estimation (local) 7787321 7877463 1336286 1246504 CM091756.1 scf7180000184078 98.84 True fake: scaffold gap size wrong estimation (local) 7735622 7787095 1387846 1336474 CM091756.1 scf7180000184078 98.92 True indel: indel (> 5bp) 7660222 7735577 1463307 1387928 CM091756.1 scf7180000184078 98.91 True fake: scaffold gap size wrong estimation (local) 7564260 7659699 1559451 1464150 CM091756.1 scf7180000184078 98.9 True CONTIG scf7180000184078 1559491 correct 15356801 15394046 37272 33 CM091754.1 scf7180000184079 99.87 True indel: indel (> 5bp) 15331054 15356756 63184 37327 CM091754.1 scf7180000184079 99.09 True fake: scaffold gap size wrong estimation (local) 15308648 15330959 84954 63282 CM091754.1 scf7180000184079 95.42 True fake: scaffold gap size wrong estimation (local) 15226190 15308323 167358 85185 CM091754.1 scf7180000184079 99.73 True fake: scaffold gap size wrong estimation (local) 15217891 15225505 175608 168064 CM091754.1 scf7180000184079 99.0 True fake: scaffold gap size wrong estimation (local) 15023993 15217119 369176 175986 CM091754.1 scf7180000184079 99.36 True fake: scaffold gap size wrong estimation (local) 14889552 15023830 505091 369276 CM091754.1 scf7180000184079 98.45 True fake: scaffold gap size wrong estimation (local) 14869213 14889899 526046 505362 CM091754.1 scf7180000184079 99.52 True indel: indel (> 5bp) 14837941 14868917 557259 526361 CM091754.1 scf7180000184079 99.19 True fake: not a misassembly (possible transposable element) 14223424 14224144 557291 558011 CM091751.1 scf7180000184079 99.6 True fake: not a misassembly (possible transposable element) 14774072 14837834 622693 558012 CM091754.1 scf7180000184079 97.0 True fake: scaffold gap size wrong estimation (local) 14773441 14773955 623328 622815 CM091754.1 scf7180000184079 99.81 True local misassembly 14767131 14773002 629949 624061 CM091754.1 scf7180000184079 99.8 True fake: scaffold gap size wrong estimation (local) 14750036 14766462 646687 630219 CM091754.1 scf7180000184079 99.5 True fake: scaffold gap size wrong estimation (local) 14675781 14749469 720778 646951 CM091754.1 scf7180000184079 99.57 True fake: scaffold gap size wrong estimation (local) 14531707 14674730 864529 721462 CM091754.1 scf7180000184079 99.86 True fake: scaffold gap size wrong estimation (local) 14491451 14530572 904305 865232 CM091754.1 scf7180000184079 99.74 True fake: scaffold gap size wrong estimation (local) 14488873 14491229 906834 904479 CM091754.1 scf7180000184079 99.45 True fake: scaffold gap size wrong estimation (local) 14480231 14488272 915456 907409 CM091754.1 scf7180000184079 99.26 True fake: scaffold gap size wrong estimation (local) 14459954 14480096 935008 915579 CM091754.1 scf7180000184079 95.53 True translocation 2327813 2328417 935674 935070 CM091751.1 scf7180000184079 98.02 True indel: indel (<= 5bp) 2327043 2327812 936445 935676 CM091751.1 scf7180000184079 99.87 True indel: indel (<= 5bp) 2325760 2326728 937724 936756 CM091751.1 scf7180000184079 99.28 True indel: indel (<= 5bp) 2325197 2325757 938285 937725 CM091751.1 scf7180000184079 99.64 True indel: indel (<= 5bp) 2324163 2324900 939320 938583 CM091751.1 scf7180000184079 99.46 True local misassembly 2321483 2323814 941652 939321 CM091751.1 scf7180000184079 99.44 True fake: scaffold gap size wrong estimation (local) 2299120 2320637 963341 942047 CM091751.1 scf7180000184079 98.38 True fake: scaffold gap size wrong estimation (local) 2296849 2298900 965576 963524 CM091751.1 scf7180000184079 99.27 True fake: scaffold gap size wrong estimation (local) 2294507 2295150 967626 966983 CM091751.1 scf7180000184079 99.07 True fake: scaffold gap size wrong estimation (local) 2290496 2292150 971607 969921 CM091751.1 scf7180000184079 98.62 True fake: scaffold gap size wrong estimation (local) 2287422 2290254 974668 971832 CM091751.1 scf7180000184079 98.7 True fake: scaffold gap size wrong estimation (local) 2262988 2286838 998912 975006 CM091751.1 scf7180000184079 99.44 True indel: indel (> 5bp) 2259527 2262900 1002390 999014 CM091751.1 scf7180000184079 99.62 True fake: scaffold gap size wrong estimation (local) 2222490 2258684 1039059 1002767 CM091751.1 scf7180000184079 99.21 True fake: scaffold gap size wrong estimation (local) 2176310 2221160 1083283 1039484 CM091751.1 scf7180000184079 96.87 True fake: scaffold gap size wrong estimation (local) 2171342 2175614 1088039 1083760 CM091751.1 scf7180000184079 99.11 True fake: scaffold gap size wrong estimation (local) 2169096 2170787 1090050 1088357 CM091751.1 scf7180000184079 99.12 True fake: scaffold gap size wrong estimation (local) 2145042 2168936 1113801 1090342 CM091751.1 scf7180000184079 96.07 True indel: indel (<= 5bp) 2140342 2144832 1118506 1114014 CM091751.1 scf7180000184079 99.33 True CONTIG scf7180000184079 1118506 misassembled 8715891 8717852 1 1960 CM091762.1 scf7180000184080 99.12 True relocation, inconsistency = -41858 8708355 8757748 51464 1961 CM091762.1 scf7180000184080 98.98 True fake: scaffold gap size wrong estimation (local) 8505701 8708152 253903 51595 CM091762.1 scf7180000184080 99.45 True fake: scaffold gap size wrong estimation (local) 8481481 8505278 278282 254096 CM091762.1 scf7180000184080 97.87 True fake: scaffold gap size wrong estimation (local) 8380599 8481079 378941 278611 CM091762.1 scf7180000184080 99.19 True fake: scaffold gap size wrong estimation (local) 8197092 8380534 562168 379035 CM091762.1 scf7180000184080 98.99 True fake: scaffold gap size wrong estimation (local) 8163337 8196751 596014 562555 CM091762.1 scf7180000184080 99.48 True fake: scaffold gap size wrong estimation (local) 8147975 8162877 610969 596035 CM091762.1 scf7180000184080 98.69 True indel: indel (> 5bp) 7853172 8147874 905933 611055 CM091762.1 scf7180000184080 99.45 True indel: indel (> 5bp) 7841139 7852826 917974 906289 CM091762.1 scf7180000184080 99.39 True local misassembly 7835041 7840687 924384 918734 CM091762.1 scf7180000184080 99.59 True indel: indel (> 5bp) 7827448 7834988 931971 924447 CM091762.1 scf7180000184080 98.91 True fake: scaffold gap size wrong estimation (local) 7814108 7822722 942743 934121 CM091762.1 scf7180000184080 99.09 True fake: scaffold gap size wrong estimation (local) 7798017 7813998 958470 942845 CM091762.1 scf7180000184080 96.31 True fake: scaffold gap size wrong estimation (local) 7789465 7797610 967061 958825 CM091762.1 scf7180000184080 98.21 True fake: scaffold gap size wrong estimation (local) 7781869 7789175 974584 967305 CM091762.1 scf7180000184080 98.74 True local misassembly 7767398 7781444 988912 974773 CM091762.1 scf7180000184080 98.54 True fake: scaffold gap size wrong estimation (local) 7756830 7767000 999699 989535 CM091762.1 scf7180000184080 99.08 True CONTIG scf7180000184080 999699 misassembled 3055018 3084294 29203 82 CM091768.1 scf7180000184081 98.65 True indel: indel (> 5bp) 3053223 3054988 31044 29254 CM091768.1 scf7180000184081 97.0 True fake: scaffold gap size wrong estimation (local) 3032476 3053104 51721 31162 CM091768.1 scf7180000184081 98.32 True fake: scaffold gap size wrong estimation (local) 3030122 3031331 53629 52420 CM091768.1 scf7180000184081 98.93 True indel: indel (> 5bp) 3028466 3030096 55260 53630 CM091768.1 scf7180000184081 99.02 True local misassembly 3008428 3026615 73819 55988 CM091768.1 scf7180000184081 96.23 True indel: indel (> 5bp) 2979409 3008398 102928 73880 CM091768.1 scf7180000184081 98.69 True translocation 14448086 14449465 104308 102929 CM091754.1 scf7180000184081 99.45 True fake: scaffold gap size wrong estimation (local) 14438486 14447920 113936 104451 CM091754.1 scf7180000184081 99.15 True CONTIG scf7180000184081 113936 misassembled 1265021 1265612 592 1 CM091763.1 scf7180000184082 100.0 True fake: scaffold gap size wrong estimation (local) 1248335 1258504 11800 1726 CM091763.1 scf7180000184082 98.81 True fake: scaffold gap size wrong estimation (local) 1195485 1246714 64076 12963 CM091763.1 scf7180000184082 99.49 True fake: scaffold gap size wrong estimation (local) 1148828 1194794 110715 64762 CM091763.1 scf7180000184082 99.43 True fake: not a misassembly (possible transposable element) 2583047 2583803 110716 111472 CM091765.1 scf7180000184082 98.22 True fake: not a misassembly (possible transposable element) 1137126 1148732 123263 111514 CM091763.1 scf7180000184082 98.77 True fake: scaffold gap size wrong estimation (local) 1126603 1136646 133494 123457 CM091763.1 scf7180000184082 99.8 True indel: indel (<= 5bp) 1125665 1126301 134436 133799 CM091763.1 scf7180000184082 96.39 True indel: indel (> 5bp) 1107854 1125513 152241 134567 CM091763.1 scf7180000184082 99.79 True fake: scaffold gap size wrong estimation (local) 1008449 1107463 251788 152373 CM091763.1 scf7180000184082 99.39 True translocation 42891 44882 251789 253750 CM091755.1 scf7180000184082 97.6 True translocation, scaffold gap is present 1247417 1248372 254908 253953 CM091763.1 scf7180000184082 98.31 True CONTIG scf7180000184082 254908 misassembled 7248713 7255817 1 7025 CM091754.1 scf7180000184083 98.23 True fake: not a misassembly (possible transposable element) 4135031 4135923 7082 7973 CM091764.1 scf7180000184083 98.95 True fake: not a misassembly (possible transposable element) 7255729 7278595 7974 31025 CM091754.1 scf7180000184083 98.64 True fake: scaffold gap size wrong estimation (local) 7278830 7301120 31164 53456 CM091754.1 scf7180000184083 99.42 True fake: scaffold gap size wrong estimation (local) 7301657 7316141 53663 68194 CM091754.1 scf7180000184083 99.27 True fake: scaffold gap size wrong estimation (local) 7316658 7348417 68450 100244 CM091754.1 scf7180000184083 99.45 True indel: indel (> 5bp) 7348448 7375359 100301 127348 CM091754.1 scf7180000184083 99.01 True fake: scaffold gap size wrong estimation (local) 7377485 7378016 129138 129669 CM091754.1 scf7180000184083 97.93 True indel: indel (<= 5bp) 7378018 7379376 129670 131028 CM091754.1 scf7180000184083 99.56 True indel: indel (> 5bp) 7379391 7379993 131029 131631 CM091754.1 scf7180000184083 99.0 True fake: scaffold gap size wrong estimation (local) 7380935 7381734 132354 133153 CM091754.1 scf7180000184083 99.75 True fake: not a misassembly (possible transposable element) 4703680 4704962 134538 133255 CM091767.1 scf7180000184083 99.38 True fake: not a misassembly (possible transposable element) 7383021 7387544 135330 139836 CM091754.1 scf7180000184083 98.77 True fake: scaffold gap size wrong estimation (local) 7387680 7405202 140000 157391 CM091754.1 scf7180000184083 98.53 True indel: indel (> 5bp) 7405289 7440923 157438 193476 CM091754.1 scf7180000184083 97.95 True fake: scaffold gap size wrong estimation (local) 7441625 7458145 193981 210036 CM091754.1 scf7180000184083 96.5 True fake: scaffold gap size wrong estimation (local) 7459642 7516569 211384 268307 CM091754.1 scf7180000184083 99.47 True fake: scaffold gap size wrong estimation (local) 7516949 7599295 268701 350889 CM091754.1 scf7180000184083 99.42 True local misassembly 7599703 7688731 351652 441200 CM091754.1 scf7180000184083 99.29 True fake: scaffold gap size wrong estimation (local) 7690386 7691127 442403 443144 CM091754.1 scf7180000184083 100.0 True fake: scaffold gap size wrong estimation (local) 7691349 7852135 443313 603688 CM091754.1 scf7180000184083 99.19 True fake: scaffold gap size wrong estimation (local) 7852253 7887885 603781 639904 CM091754.1 scf7180000184083 97.44 True fake: scaffold gap size wrong estimation (local) 7888323 7889545 640714 641913 CM091754.1 scf7180000184083 97.3 True fake: not a misassembly (possible transposable element) 11978965 11979803 642098 642936 CM091756.1 scf7180000184083 99.05 True fake: not a misassembly (possible transposable element) 7890029 7893453 642957 646384 CM091754.1 scf7180000184083 98.77 True CONTIG scf7180000184083 647342 correct 17994170 18202257 209889 41 CM091753.1 scf7180000184084 98.49 True CONTIG scf7180000184084 209889 correct 19473210 19474809 6 1609 CM091751.1 scf7180000184085 98.63 True translocation 1498245 1514996 18364 1610 CM091758.1 scf7180000184085 99.26 True fake: scaffold gap size wrong estimation (local) 1496983 1497781 19296 18498 CM091758.1 scf7180000184085 99.87 True fake: scaffold gap size wrong estimation (local) 1443163 1496753 72291 19496 CM091758.1 scf7180000184085 97.9 True indel: indel (<= 5bp) 1400283 1443103 114534 72355 CM091758.1 scf7180000184085 97.85 True fake: scaffold gap size wrong estimation (local) 1396621 1399727 118166 115006 CM091758.1 scf7180000184085 97.77 True fake: scaffold gap size wrong estimation (local) 1394525 1395276 119879 119128 CM091758.1 scf7180000184085 95.48 True local misassembly 1393507 1394101 120474 119880 CM091758.1 scf7180000184085 100.0 True fake: scaffold gap size wrong estimation (local) 1351647 1393287 162220 120710 CM091758.1 scf7180000184085 99.21 True fake: scaffold gap size wrong estimation (local) 1341022 1350848 172340 162518 CM091758.1 scf7180000184085 99.38 True fake: scaffold gap size wrong estimation (local) 1337953 1338866 174894 173981 CM091758.1 scf7180000184085 99.89 True indel: indel (<= 5bp) 1337393 1337952 175455 174896 CM091758.1 scf7180000184085 99.82 True fake: scaffold gap size wrong estimation (local) 1335309 1336133 177293 176469 CM091758.1 scf7180000184085 99.64 True indel: indel (<= 5bp) 1333954 1335308 178649 177295 CM091758.1 scf7180000184085 99.78 True indel: indel (<= 5bp) 1332600 1333951 180001 178650 CM091758.1 scf7180000184085 100.0 True fake: scaffold gap size wrong estimation (local) 1327666 1330736 184458 181388 CM091758.1 scf7180000184085 99.74 True fake: scaffold gap size wrong estimation (local) 1299279 1325031 212131 186168 CM091758.1 scf7180000184085 98.43 True fake: scaffold gap size wrong estimation (local) 1143421 1294143 362735 212340 CM091758.1 scf7180000184085 99.28 True relocation, inconsistency = 40176 988728 1103244 477432 362736 CM091758.1 scf7180000184085 99.31 True fake: scaffold gap size wrong estimation (local) 916088 988519 550035 477595 CM091758.1 scf7180000184085 99.28 True indel: indel (<= 5bp) 907303 916036 558876 550082 CM091758.1 scf7180000184085 99.01 True indel: indel (<= 5bp) 806499 907232 659785 558948 CM091758.1 scf7180000184085 99.26 True relocation, inconsistency = 644848 146393 161650 675012 659786 CM091758.1 scf7180000184085 99.43 True fake: scaffold gap size wrong estimation (local) 130199 145675 690976 675497 CM091758.1 scf7180000184085 99.81 True fake: scaffold gap size wrong estimation (local) 33982 130074 786126 691065 CM091758.1 scf7180000184085 98.55 True fake: scaffold gap size wrong estimation (local) 32887 33724 787379 786530 CM091758.1 scf7180000184085 99.4 True CONTIG scf7180000184085 788603 misassembled 15302573 15330641 29538 1463 CM091756.1 scf7180000184086 99.57 True fake: scaffold gap size wrong estimation (local) 15280825 15302471 51311 29634 CM091756.1 scf7180000184086 99.79 True fake: scaffold gap size wrong estimation (local) 15276918 15279935 54740 51726 CM091756.1 scf7180000184086 99.73 True indel: indel (> 5bp) 15269390 15276853 62172 54780 CM091756.1 scf7180000184086 98.75 True fake: scaffold gap size wrong estimation (local) 15261243 15269083 69809 62331 CM091756.1 scf7180000184086 95.02 True fake: scaffold gap size wrong estimation (local) 15237787 15260420 93257 70619 CM091756.1 scf7180000184086 99.65 True indel: stretch of mismatches 15200775 15237703 130286 93341 CM091756.1 scf7180000184086 99.68 True fake: scaffold gap size wrong estimation (local) 15144570 15197150 183165 131095 CM091756.1 scf7180000184086 98.34 True fake: scaffold gap size wrong estimation (local) 15031719 15144165 295485 183353 CM091756.1 scf7180000184086 99.28 True translocation 11494035 11637678 295486 438905 CM091758.1 scf7180000184086 99.37 True translocation 2876689 2877864 438906 440082 CM091768.1 scf7180000184086 99.83 True CONTIG scf7180000184086 440082 misassembled 8795084 8827023 32540 1 CM091766.1 scf7180000184087 98.4 True fake: scaffold gap size wrong estimation (local) 8758932 8794379 68489 33038 CM091766.1 scf7180000184087 99.75 True fake: not a misassembly (possible transposable element) 4693516 4694257 70106 69365 CM091768.1 scf7180000184087 100.0 True fake: not a misassembly (possible transposable element) 8756467 8757152 70813 70128 CM091766.1 scf7180000184087 98.98 True fake: scaffold gap size wrong estimation (local) 8755931 8756730 72332 71541 CM091766.1 scf7180000184087 97.25 True fake: scaffold gap size wrong estimation (local) 8545700 8755784 283576 72422 CM091766.1 scf7180000184087 98.9 True indel: indel (<= 5bp) 8494029 8545591 335214 283686 CM091766.1 scf7180000184087 99.76 True local misassembly 8489538 8492908 339056 335697 CM091766.1 scf7180000184087 99.19 True fake: scaffold gap size wrong estimation (local) 8486771 8488406 341488 339853 CM091766.1 scf7180000184087 98.35 True local misassembly 8483642 8485693 343540 341489 CM091766.1 scf7180000184087 99.76 True fake: scaffold gap size wrong estimation (local) 8478817 8481041 345991 343772 CM091766.1 scf7180000184087 99.06 True fake: scaffold gap size wrong estimation (local) 8469589 8473469 349908 346028 CM091766.1 scf7180000184087 99.9 True CONTIG scf7180000184087 349918 correct CONTIG scf7180000184088 38950 unaligned 14534578 14566214 171 31943 CM091751.1 scf7180000184089 99.22 True fake: scaffold gap size wrong estimation (local) 14566356 14576140 32074 41870 CM091751.1 scf7180000184089 99.5 True local misassembly 14578639 14580311 42655 44327 CM091751.1 scf7180000184089 99.46 True local misassembly 14580743 14582989 44538 46784 CM091751.1 scf7180000184089 99.07 True indel: indel (> 5bp) 14583408 14584441 47177 48210 CM091751.1 scf7180000184089 99.42 True fake: scaffold gap size wrong estimation (local) 14585508 14590189 48671 53352 CM091751.1 scf7180000184089 99.68 True indel: indel (> 5bp) 14590284 14591155 53457 54328 CM091751.1 scf7180000184089 99.31 True local misassembly 14591804 14593115 54329 55640 CM091751.1 scf7180000184089 99.24 True indel: indel (<= 5bp) 14593476 14595948 56006 58478 CM091751.1 scf7180000184089 99.19 True local misassembly 14596350 14598843 58558 61092 CM091751.1 scf7180000184089 96.13 True fake: scaffold gap size wrong estimation (local) 14599086 14600289 61242 62445 CM091751.1 scf7180000184089 99.58 True fake: scaffold gap size wrong estimation (local) 14600658 14602221 62699 64262 CM091751.1 scf7180000184089 99.55 True indel: indel (<= 5bp) 14602222 14603693 64264 65735 CM091751.1 scf7180000184089 99.59 True fake: scaffold gap size wrong estimation (local) 14604299 14604900 66364 66965 CM091751.1 scf7180000184089 99.0 True fake: scaffold gap size wrong estimation (local) 14606301 14607304 67527 68530 CM091751.1 scf7180000184089 99.5 True indel: stretch of mismatches 14607730 14609957 68956 71183 CM091751.1 scf7180000184089 99.82 True local misassembly 14610680 14611296 71824 72440 CM091751.1 scf7180000184089 99.84 True indel: indel (<= 5bp) 14611300 14612654 72441 73795 CM091751.1 scf7180000184089 99.93 True indel: indel (<= 5bp) 14612937 14613439 74080 74582 CM091751.1 scf7180000184089 99.8 True local misassembly 14613988 14614843 75134 75989 CM091751.1 scf7180000184089 99.53 True local misassembly 14615522 14618823 76671 79972 CM091751.1 scf7180000184089 99.85 True indel: indel (> 5bp) 14618824 14620292 79980 81448 CM091751.1 scf7180000184089 99.8 True fake: scaffold gap size wrong estimation (local) 14620494 14626198 81559 87379 CM091751.1 scf7180000184089 95.31 True indel: indel (> 5bp) 14626266 14642207 87414 103102 CM091751.1 scf7180000184089 97.8 True fake: scaffold gap size wrong estimation (local) 14642368 14692644 103240 153546 CM091751.1 scf7180000184089 99.71 True fake: scaffold gap size wrong estimation (local) 14692893 14704695 154028 165841 CM091751.1 scf7180000184089 99.7 True fake: scaffold gap size wrong estimation (local) 14707064 14733014 167219 193190 CM091751.1 scf7180000184089 99.59 True local misassembly 14734728 14737280 194002 196555 CM091751.1 scf7180000184089 99.26 True fake: scaffold gap size wrong estimation (local) 14740089 14748725 197401 206036 CM091751.1 scf7180000184089 99.55 True fake: scaffold gap size wrong estimation (local) 14748811 14756808 206158 214499 CM091751.1 scf7180000184089 95.09 True local misassembly 14758528 14763139 214602 219156 CM091751.1 scf7180000184089 98.22 True indel: indel (> 5bp) 14763185 14970378 219186 426318 CM091751.1 scf7180000184089 98.76 True CONTIG scf7180000184089 426318 correct 1191643 1192965 335 1657 CM091752.1 scf7180000184090 99.7 True fake: scaffold gap size wrong estimation (local) 1193405 1200804 1893 9225 CM091752.1 scf7180000184090 97.8 True fake: not a misassembly (possible transposable element) 14705897 14706559 10221 9557 CM091755.1 scf7180000184090 98.95 True fake: not a misassembly (possible transposable element) 1202602 1205173 10242 12781 CM091752.1 scf7180000184090 97.71 True fake: scaffold gap size wrong estimation (local) 1205677 1207055 13272 14649 CM091752.1 scf7180000184090 99.28 True local misassembly 1207745 1208451 15308 16014 CM091752.1 scf7180000184090 99.72 True local misassembly 1209693 1210603 16743 17653 CM091752.1 scf7180000184090 99.78 True indel: indel (<= 5bp) 1211052 1211731 18103 18782 CM091752.1 scf7180000184090 99.41 True CONTIG scf7180000184090 19494 correct 9163963 9168627 1824 6489 CM091763.1 scf7180000184091 98.84 True relocation, scaffold gap is present, inconsistency = -17450 9152224 9153276 7536 8571 CM091763.1 scf7180000184091 97.11 True fake: scaffold gap size wrong estimation (local) 9153523 9158045 8833 13415 CM091763.1 scf7180000184091 97.05 True CONTIG scf7180000184091 13878 misassembled 8908034 8909293 1260 1 CM091767.1 scf7180000184092 99.52 True fake: scaffold gap size wrong estimation (local) 8905424 8906024 3631 3031 CM091767.1 scf7180000184092 100.0 True fake: scaffold gap size wrong estimation (local) 8900387 8903266 7240 4279 CM091767.1 scf7180000184092 97.98 True translocation 3248840 3255129 13382 7241 CM091752.1 scf7180000184092 97.25 True relocation, scaffold gap is present, inconsistency = -9185 3255242 3256780 16151 14627 CM091752.1 scf7180000184092 99.01 True fake: scaffold gap size wrong estimation (extensive) 3245149 3246536 17559 16172 CM091752.1 scf7180000184092 99.93 True CONTIG scf7180000184092 17559 misassembled 7249311 7296756 47434 1 CM091759.1 scf7180000184093 99.41 True fake: scaffold gap size wrong estimation (local) 7127452 7248488 168923 47817 CM091759.1 scf7180000184093 99.52 True fake: scaffold gap size wrong estimation (local) 7078558 7126335 217155 169580 CM091759.1 scf7180000184093 98.42 True fake: scaffold gap size wrong estimation (local) 7006457 7078360 289720 217798 CM091759.1 scf7180000184093 99.4 True fake: scaffold gap size wrong estimation (local) 7004378 7006340 291743 289779 CM091759.1 scf7180000184093 99.75 True CONTIG scf7180000184093 291743 correct 2412544 2413471 1 928 CM091768.1 scf7180000184094 99.25 True local misassembly 2416035 2417933 2932 4832 CM091768.1 scf7180000184094 98.84 True local misassembly 2418629 2420066 5171 6608 CM091768.1 scf7180000184094 98.89 True local misassembly 2420738 2421264 7270 7796 CM091768.1 scf7180000184094 99.62 True indel: indel (<= 5bp) 2421265 2421939 7799 8473 CM091768.1 scf7180000184094 99.7 True indel: indel (> 5bp) 2421988 2423337 8474 9823 CM091768.1 scf7180000184094 99.26 True indel: indel (<= 5bp) 2423455 2424230 9936 10711 CM091768.1 scf7180000184094 99.36 True fake: scaffold gap size wrong estimation (local) 2425772 2428100 11423 13751 CM091768.1 scf7180000184094 99.44 True fake: scaffold gap size wrong estimation (local) 2430654 2431527 15732 16605 CM091768.1 scf7180000184094 99.43 True indel: indel (<= 5bp) 2431695 2432259 16772 17336 CM091768.1 scf7180000184094 98.76 True fake: scaffold gap size wrong estimation (local) 2433612 2434591 18095 19074 CM091768.1 scf7180000184094 98.67 True fake: scaffold gap size wrong estimation (local) 2435849 2437148 19913 21212 CM091768.1 scf7180000184094 99.77 True local misassembly 2437992 2438827 21866 22701 CM091768.1 scf7180000184094 99.64 True indel: indel (<= 5bp) 2438928 2439469 22799 23340 CM091768.1 scf7180000184094 99.82 True local misassembly 2440199 2440894 23689 24384 CM091768.1 scf7180000184094 99.14 True fake: scaffold gap size wrong estimation (local) 2441539 2444730 25172 28363 CM091768.1 scf7180000184094 98.74 True fake: scaffold gap size wrong estimation (local) 2445665 2446332 29017 29684 CM091768.1 scf7180000184094 99.85 True fake: scaffold gap size wrong estimation (local) 2446437 2447931 29782 31287 CM091768.1 scf7180000184094 98.08 True local misassembly 2448856 2450426 32120 33702 CM091768.1 scf7180000184094 97.98 True fake: not a misassembly (possible transposable element) 19977855 19979271 35352 33934 CM091751.1 scf7180000184094 98.54 True fake: not a misassembly (possible transposable element) 2450904 2457512 35353 42004 CM091768.1 scf7180000184094 98.41 True fake: scaffold gap size wrong estimation (local) 2457384 2458904 42470 43995 CM091768.1 scf7180000184094 99.15 True fake: scaffold gap size wrong estimation (local) 2460025 2461105 45252 46332 CM091768.1 scf7180000184094 99.26 True indel: indel (<= 5bp) 2461174 2461992 46403 47221 CM091768.1 scf7180000184094 98.78 True local misassembly 2463348 2463858 47401 47911 CM091768.1 scf7180000184094 98.83 True indel: indel (> 5bp) 2464202 2465081 48229 49108 CM091768.1 scf7180000184094 99.43 True indel: indel (> 5bp) 2465258 2466145 49334 50221 CM091768.1 scf7180000184094 98.99 True local misassembly 2467496 2468586 51524 52614 CM091768.1 scf7180000184094 99.36 True indel: indel (> 5bp) 2468957 2469471 52971 53485 CM091768.1 scf7180000184094 98.64 True local misassembly 2469728 2471501 53486 55259 CM091768.1 scf7180000184094 99.21 True indel: indel (<= 5bp) 2471502 2472411 55261 56170 CM091768.1 scf7180000184094 99.56 True indel: indel (<= 5bp) 2472412 2474124 56172 57884 CM091768.1 scf7180000184094 99.59 True local misassembly 2475933 2476562 58943 59572 CM091768.1 scf7180000184094 99.05 True indel: indel (<= 5bp) 2476590 2480714 59601 63725 CM091768.1 scf7180000184094 99.05 True local misassembly 2480844 2481868 63726 64750 CM091768.1 scf7180000184094 99.61 True local misassembly 2482555 2484295 65444 67184 CM091768.1 scf7180000184094 99.2 True fake: scaffold gap size wrong estimation (local) 2484888 2512152 67907 95160 CM091768.1 scf7180000184094 99.49 True fake: scaffold gap size wrong estimation (local) 2512327 2513008 95304 95985 CM091768.1 scf7180000184094 98.97 True fake: scaffold gap size wrong estimation (local) 2514694 2515298 97442 98046 CM091768.1 scf7180000184094 99.83 True indel: indel (<= 5bp) 2515299 2516141 98048 98890 CM091768.1 scf7180000184094 99.41 True local misassembly 2516925 2520097 99683 102855 CM091768.1 scf7180000184094 99.62 True indel: stretch of mismatches 2520437 2521174 103195 103932 CM091768.1 scf7180000184094 99.19 True indel: indel (<= 5bp) 2521613 2524523 104373 107283 CM091768.1 scf7180000184094 99.35 True indel: indel (<= 5bp) 2524968 2526012 107726 108770 CM091768.1 scf7180000184094 99.9 True indel: indel (<= 5bp) 2526014 2527578 108771 110335 CM091768.1 scf7180000184094 99.3 True indel: indel (> 5bp) 2527740 2528677 110490 111427 CM091768.1 scf7180000184094 99.25 True indel: indel (> 5bp) 2529066 2529971 111798 112703 CM091768.1 scf7180000184094 98.79 True indel: indel (> 5bp) 2529972 2531389 112758 114175 CM091768.1 scf7180000184094 99.29 True local misassembly 2531995 2532808 114712 115525 CM091768.1 scf7180000184094 99.39 True indel: indel (<= 5bp) 2532829 2534725 115547 117443 CM091768.1 scf7180000184094 99.63 True indel: indel (<= 5bp) 2535119 2536834 117839 119554 CM091768.1 scf7180000184094 99.42 True indel: indel (<= 5bp) 2536890 2537567 119612 120289 CM091768.1 scf7180000184094 99.56 True indel: indel (<= 5bp) 2537888 2539469 120613 122194 CM091768.1 scf7180000184094 99.62 True local misassembly 2540484 2541208 123210 123934 CM091768.1 scf7180000184094 98.21 True indel: indel (<= 5bp) 2541209 2542033 123936 124760 CM091768.1 scf7180000184094 100.0 True indel: indel (<= 5bp) 2542034 2542651 124764 125381 CM091768.1 scf7180000184094 99.84 True local misassembly 2543445 2544225 126167 126947 CM091768.1 scf7180000184094 98.34 True indel: indel (<= 5bp) 2544226 2545196 126949 127919 CM091768.1 scf7180000184094 99.69 True local misassembly 2546135 2547425 128046 129336 CM091768.1 scf7180000184094 98.68 True local misassembly 2547744 2548633 129497 130386 CM091768.1 scf7180000184094 99.55 True local misassembly 2549363 2549954 131113 131704 CM091768.1 scf7180000184094 99.32 True local misassembly 2551165 2552012 132917 133764 CM091768.1 scf7180000184094 99.17 True indel: indel (<= 5bp) 2552265 2553498 134022 135255 CM091768.1 scf7180000184094 99.68 True local misassembly 2555088 2555961 136300 137173 CM091768.1 scf7180000184094 98.86 True indel: indel (<= 5bp) 2555967 2556773 137174 137980 CM091768.1 scf7180000184094 99.26 True local misassembly 2557631 2558259 138189 138817 CM091768.1 scf7180000184094 99.36 True fake: scaffold gap size wrong estimation (local) 2558471 2559556 139042 140127 CM091768.1 scf7180000184094 99.72 True fake: scaffold gap size wrong estimation (local) 2560837 2563583 140424 143177 CM091768.1 scf7180000184094 98.77 True fake: scaffold gap size wrong estimation (local) 2564385 2569379 143844 148855 CM091768.1 scf7180000184094 98.63 True fake: scaffold gap size wrong estimation (local) 2570910 2571663 149739 150492 CM091768.1 scf7180000184094 99.2 True fake: scaffold gap size wrong estimation (local) 2571931 2572571 151033 151673 CM091768.1 scf7180000184094 98.44 True indel: indel (<= 5bp) 2572572 2573370 151677 152475 CM091768.1 scf7180000184094 99.75 True indel: indel (<= 5bp) 2573371 2573913 152479 153021 CM091768.1 scf7180000184094 99.82 True local misassembly 2574425 2622551 153526 199808 CM091768.1 scf7180000184094 95.27 True indel: stretch of mismatches 2622568 2626409 199825 203548 CM091768.1 scf7180000184094 96.07 True local misassembly 2626821 2628419 203744 205342 CM091768.1 scf7180000184094 99.62 True indel: indel (> 5bp) 2628436 2629113 205343 206020 CM091768.1 scf7180000184094 99.71 True indel: indel (<= 5bp) 2629473 2630435 206383 207345 CM091768.1 scf7180000184094 99.58 True fake: scaffold gap size wrong estimation (local) 2630823 2631674 208444 209295 CM091768.1 scf7180000184094 99.53 True indel: indel (<= 5bp) 2631737 2632508 209363 210134 CM091768.1 scf7180000184094 99.09 True indel: indel (> 5bp) 2632856 2633554 210494 211192 CM091768.1 scf7180000184094 99.0 True local misassembly 2633949 2634962 211283 212296 CM091768.1 scf7180000184094 98.92 True fake: scaffold gap size wrong estimation (local) 2636462 2637073 213898 214509 CM091768.1 scf7180000184094 99.35 True indel: indel (<= 5bp) 2637075 2637786 214510 215221 CM091768.1 scf7180000184094 98.88 True indel: indel (<= 5bp) 2638205 2639670 215638 217103 CM091768.1 scf7180000184094 99.25 True local misassembly 2641114 2641709 218554 219149 CM091768.1 scf7180000184094 99.66 True local misassembly 2643540 2644061 220818 221339 CM091768.1 scf7180000184094 99.81 True fake: scaffold gap size wrong estimation (local) 2645481 2646141 222741 223401 CM091768.1 scf7180000184094 100.0 True local misassembly 2648044 2648680 224469 225105 CM091768.1 scf7180000184094 97.65 True indel: indel (> 5bp) 2648954 2649945 225308 226299 CM091768.1 scf7180000184094 99.5 True indel: stretch of mismatches 2650325 2651554 226679 227908 CM091768.1 scf7180000184094 99.59 True local misassembly 2652363 2652917 228508 229062 CM091768.1 scf7180000184094 98.92 True local misassembly 2653429 2654365 229580 230516 CM091768.1 scf7180000184094 99.57 True indel: indel (<= 5bp) 2654369 2655213 230517 231361 CM091768.1 scf7180000184094 99.05 True fake: scaffold gap size wrong estimation (local) 2655839 2657563 232543 234267 CM091768.1 scf7180000184094 99.07 True indel: indel (> 5bp) 2657577 2659187 234293 235903 CM091768.1 scf7180000184094 99.63 True indel: indel (<= 5bp) 2659188 2659720 235905 236437 CM091768.1 scf7180000184094 99.81 True fake: scaffold gap size wrong estimation (local) 2660175 2691440 236858 268114 CM091768.1 scf7180000184094 99.5 True local misassembly 2691986 2692989 268358 269361 CM091768.1 scf7180000184094 99.5 True local misassembly 2693532 2694562 269628 270658 CM091768.1 scf7180000184094 98.25 True local misassembly 2694831 2696542 270708 272419 CM091768.1 scf7180000184094 99.12 True local misassembly 2697908 2698547 273789 274428 CM091768.1 scf7180000184094 99.69 True indel: indel (<= 5bp) 2698549 2699150 274429 275030 CM091768.1 scf7180000184094 99.17 True indel: indel (<= 5bp) 2699167 2700722 275046 276601 CM091768.1 scf7180000184094 98.65 True fake: scaffold gap size wrong estimation (local) 2700918 2703313 276730 279120 CM091768.1 scf7180000184094 97.42 True CONTIG scf7180000184094 279120 correct 2851941 2852444 1554 2057 CM091752.1 scf7180000184095 99.8 True fake: scaffold gap size wrong estimation (local) 2852929 2855569 2702 5341 CM091752.1 scf7180000184095 99.33 True fake: scaffold gap size wrong estimation (local) 2856058 2856830 5700 6472 CM091752.1 scf7180000184095 99.87 True CONTIG scf7180000184095 6472 correct 314788 331711 16576 1 CM091751.1 scf7180000184096 96.52 True translocation, scaffold gap is present 1232886 1242577 30021 20325 CM091764.1 scf7180000184096 99.87 True fake: scaffold gap size wrong estimation (local) 1215892 1232762 47008 30123 CM091764.1 scf7180000184096 99.79 True indel: indel (> 5bp) 1187420 1215571 75574 47406 CM091764.1 scf7180000184096 99.83 True fake: scaffold gap size wrong estimation (local) 1167397 1187197 95531 75770 CM091764.1 scf7180000184096 99.69 True indel: indel (<= 5bp) 1098551 1167369 164712 95556 CM091764.1 scf7180000184096 99.4 True local misassembly 1096616 1097215 165312 164713 CM091764.1 scf7180000184096 99.83 True fake: scaffold gap size wrong estimation (local) 1083234 1095044 177891 166164 CM091764.1 scf7180000184096 98.95 True fake: scaffold gap size wrong estimation (local) 1071252 1083031 189703 177926 CM091764.1 scf7180000184096 99.62 True CONTIG scf7180000184096 189710 misassembled 4223938 4225926 2151 162 CM091768.1 scf7180000184097 99.9 True fake: scaffold gap size wrong estimation (local) 4219713 4220472 5910 5151 CM091768.1 scf7180000184097 98.82 True fake: scaffold gap size wrong estimation (local) 4217747 4218469 7550 6827 CM091768.1 scf7180000184097 99.59 True relocation, scaffold gap is present, inconsistency = -119732 4336639 4337430 8374 7599 CM091768.1 scf7180000184097 97.02 True relocation, scaffold gap is present, inconsistency = 488176 3839168 3848442 8395 17569 CM091768.1 scf7180000184097 98.64 True relocation, scaffold gap is present, inconsistency = 457341 4305833 4306425 18211 17619 CM091768.1 scf7180000184097 98.82 True fake: scaffold gap size wrong estimation (local) 4304897 4305716 19138 18323 CM091768.1 scf7180000184097 95.98 True fake: scaffold gap size wrong estimation (local) 4303596 4304208 21255 20643 CM091768.1 scf7180000184097 97.88 True CONTIG scf7180000184097 21257 misassembled 978922 980492 1139 2665 CM091764.1 scf7180000184098 96.84 True fake: scaffold gap size wrong estimation (local) 981048 1003217 3559 26093 CM091764.1 scf7180000184098 98.2 True fake: scaffold gap size wrong estimation (local) 1003532 1004589 26222 27313 CM091764.1 scf7180000184098 95.33 True fake: scaffold gap size wrong estimation (local) 1005124 1006080 27773 28729 CM091764.1 scf7180000184098 98.01 True local misassembly 1006315 1007043 28730 29458 CM091764.1 scf7180000184098 97.12 True fake: scaffold gap size wrong estimation (local) 1008041 1009659 30483 32101 CM091764.1 scf7180000184098 99.81 True fake: scaffold gap size wrong estimation (local) 1009926 1010513 32180 32767 CM091764.1 scf7180000184098 100.0 True fake: scaffold gap size wrong estimation (local) 1010659 1034672 33048 57209 CM091764.1 scf7180000184098 98.81 True fake: scaffold gap size wrong estimation (local) 1034899 1050367 57367 72521 CM091764.1 scf7180000184098 97.61 True fake: scaffold gap size wrong estimation (local) 1050532 1053154 72631 75210 CM091764.1 scf7180000184098 97.99 True fake: scaffold gap size wrong estimation (local) 1053267 1063107 75400 84985 CM091764.1 scf7180000184098 96.16 True fake: scaffold gap size wrong estimation (local) 1063276 1064840 85113 86678 CM091764.1 scf7180000184098 99.87 True CONTIG scf7180000184098 86683 correct 1226783 1228396 884 2497 CM091752.1 scf7180000184099 99.5 True fake: scaffold gap size wrong estimation (local) 1228917 1231288 2962 5333 CM091752.1 scf7180000184099 98.82 True fake: scaffold gap size wrong estimation (local) 1231424 1243579 5454 17645 CM091752.1 scf7180000184099 99.11 True local misassembly 1244596 1245314 18661 19379 CM091752.1 scf7180000184099 99.58 True local misassembly 1247743 1249531 20598 22386 CM091752.1 scf7180000184099 99.78 True indel: indel (<= 5bp) 1249533 1250716 22387 23570 CM091752.1 scf7180000184099 98.99 True local misassembly 1251316 1253633 23571 25888 CM091752.1 scf7180000184099 98.96 True indel: indel (<= 5bp) 1253634 1255530 25890 27786 CM091752.1 scf7180000184099 99.63 True indel: indel (<= 5bp) 1255531 1257570 27788 29827 CM091752.1 scf7180000184099 99.51 True indel: indel (<= 5bp) 1257572 1258993 29828 31249 CM091752.1 scf7180000184099 99.37 True local misassembly 1260473 1263249 32727 35503 CM091752.1 scf7180000184099 99.42 True indel: indel (<= 5bp) 1263250 1263797 35505 36052 CM091752.1 scf7180000184099 99.82 True local misassembly 1264549 1266466 36805 38722 CM091752.1 scf7180000184099 99.58 True local misassembly 1267484 1268012 39092 39620 CM091752.1 scf7180000184099 99.81 True indel: indel (<= 5bp) 1268014 1268634 39621 40241 CM091752.1 scf7180000184099 99.19 True local misassembly 1269388 1270226 40629 41467 CM091752.1 scf7180000184099 99.17 True indel: indel (> 5bp) 1270742 1272266 41954 43478 CM091752.1 scf7180000184099 99.41 True indel: indel (<= 5bp) 1272272 1273265 43479 44472 CM091752.1 scf7180000184099 98.79 True indel: indel (<= 5bp) 1273418 1284182 44624 55407 CM091752.1 scf7180000184099 99.05 True local misassembly 1284810 1285650 55832 56672 CM091752.1 scf7180000184099 98.1 True indel: indel (<= 5bp) 1285651 1286447 56676 57472 CM091752.1 scf7180000184099 99.62 True local misassembly 1287948 1289288 58034 59374 CM091752.1 scf7180000184099 99.4 True indel: indel (<= 5bp) 1289293 1289953 59375 60035 CM091752.1 scf7180000184099 99.09 True local misassembly 1290607 1291561 60036 60990 CM091752.1 scf7180000184099 98.74 True indel: indel (<= 5bp) 1291564 1293882 60991 63309 CM091752.1 scf7180000184099 99.7 True indel: indel (<= 5bp) 1294293 1295870 63721 65298 CM091752.1 scf7180000184099 99.75 True indel: indel (<= 5bp) 1295989 1296754 65419 66184 CM091752.1 scf7180000184099 99.74 True indel: indel (<= 5bp) 1296756 1297841 66185 67270 CM091752.1 scf7180000184099 99.82 True indel: indel (> 5bp) 1297842 1298367 67277 67802 CM091752.1 scf7180000184099 99.24 True local misassembly 1298918 1300688 68353 70123 CM091752.1 scf7180000184099 99.83 True indel: stretch of mismatches 1301117 1302580 70552 72015 CM091752.1 scf7180000184099 99.86 True local misassembly 1303747 1304469 72340 73062 CM091752.1 scf7180000184099 99.03 True indel: indel (<= 5bp) 1304470 1305709 73064 74303 CM091752.1 scf7180000184099 99.27 True local misassembly 1306724 1307711 75287 76274 CM091752.1 scf7180000184099 99.19 True local misassembly 1309366 1310036 77923 78593 CM091752.1 scf7180000184099 99.4 True indel: indel (<= 5bp) 1310037 1311017 78595 79575 CM091752.1 scf7180000184099 98.98 True local misassembly 1314433 1315098 81213 81878 CM091752.1 scf7180000184099 99.4 True local misassembly 1315352 1315939 82259 82846 CM091752.1 scf7180000184099 96.09 True local misassembly 1316277 1319160 82847 85730 CM091752.1 scf7180000184099 99.76 True indel: indel (> 5bp) 1319161 1319795 85742 86376 CM091752.1 scf7180000184099 100.0 True local misassembly 1320299 1322791 86606 89098 CM091752.1 scf7180000184099 99.64 True indel: indel (> 5bp) 1322792 1323716 89107 90031 CM091752.1 scf7180000184099 98.81 True local misassembly 1324867 1326875 90301 92309 CM091752.1 scf7180000184099 99.6 True indel: indel (<= 5bp) 1326877 1328441 92310 93874 CM091752.1 scf7180000184099 99.81 True indel: indel (> 5bp) 1328607 1329584 94032 95009 CM091752.1 scf7180000184099 99.8 True indel: indel (<= 5bp) 1329585 1330906 95011 96332 CM091752.1 scf7180000184099 99.7 True indel: indel (<= 5bp) 1330907 1332469 96334 97896 CM091752.1 scf7180000184099 99.36 True indel: indel (<= 5bp) 1332472 1334167 97897 99592 CM091752.1 scf7180000184099 99.17 True local misassembly 1334792 1336271 100060 101539 CM091752.1 scf7180000184099 99.73 True indel: indel (> 5bp) 1336308 1339630 101540 104862 CM091752.1 scf7180000184099 99.31 True indel: indel (<= 5bp) 1339631 1343062 104864 108295 CM091752.1 scf7180000184099 99.77 True indel: indel (<= 5bp) 1343063 1343615 108297 108849 CM091752.1 scf7180000184099 99.64 True indel: indel (<= 5bp) 1343616 1344147 108851 109382 CM091752.1 scf7180000184099 100.0 True indel: indel (<= 5bp) 1344228 1345504 109466 110742 CM091752.1 scf7180000184099 99.45 True local misassembly 1346362 1348838 111603 114079 CM091752.1 scf7180000184099 99.6 True local misassembly 1349093 1349866 114080 114853 CM091752.1 scf7180000184099 98.84 True indel: indel (<= 5bp) 1349993 1350598 114976 115581 CM091752.1 scf7180000184099 99.34 True local misassembly 1351386 1353504 115864 117982 CM091752.1 scf7180000184099 99.62 True indel: indel (<= 5bp) 1353509 1354541 117983 119015 CM091752.1 scf7180000184099 99.9 True indel: indel (> 5bp) 1354548 1355156 119016 119624 CM091752.1 scf7180000184099 99.34 True fake: scaffold gap size wrong estimation (local) 1356077 1357184 120519 121626 CM091752.1 scf7180000184099 99.19 True fake: scaffold gap size wrong estimation (local) 1357327 1370336 121774 134838 CM091752.1 scf7180000184099 99.34 True fake: scaffold gap size wrong estimation (local) 1371010 1371604 135463 136057 CM091752.1 scf7180000184099 98.66 True indel: indel (<= 5bp) 1371630 1372682 136085 137137 CM091752.1 scf7180000184099 99.43 True indel: indel (> 5bp) 1372941 1373580 137408 138047 CM091752.1 scf7180000184099 99.69 True indel: indel (<= 5bp) 1373714 1375858 138183 140327 CM091752.1 scf7180000184099 99.53 True indel: indel (<= 5bp) 1375860 1376968 140328 141436 CM091752.1 scf7180000184099 99.28 True fake: scaffold gap size wrong estimation (local) 1379156 1380018 143645 144507 CM091752.1 scf7180000184099 98.96 True indel: indel (<= 5bp) 1380019 1380760 144509 145250 CM091752.1 scf7180000184099 99.33 True local misassembly 1381639 1382306 145251 145918 CM091752.1 scf7180000184099 99.85 True local misassembly 1383688 1387398 147145 150874 CM091752.1 scf7180000184099 98.9 True fake: scaffold gap size wrong estimation (local) 1388150 1391054 151310 154222 CM091752.1 scf7180000184099 98.36 True fake: scaffold gap size wrong estimation (local) 1391726 1395993 154703 158970 CM091752.1 scf7180000184099 98.62 True fake: scaffold gap size wrong estimation (local) 1396654 1418499 159188 180234 CM091752.1 scf7180000184099 95.59 True fake: scaffold gap size wrong estimation (local) 1418605 1422067 180369 183838 CM091752.1 scf7180000184099 99.51 True fake: not a misassembly (possible transposable element) 11197587 11202118 188397 183859 CM091756.1 scf7180000184099 99.12 True fake: not a misassembly (possible transposable element) 1422011 1422652 188398 189039 CM091752.1 scf7180000184099 99.12 True indel: indel (> 5bp) 1423080 1424121 189409 190450 CM091752.1 scf7180000184099 99.71 True indel: indel (<= 5bp) 1424123 1425431 190451 191759 CM091752.1 scf7180000184099 99.62 True fake: scaffold gap size wrong estimation (local) 1426976 1427925 192705 193654 CM091752.1 scf7180000184099 99.26 True indel: indel (<= 5bp) 1427928 1428914 193655 194641 CM091752.1 scf7180000184099 99.7 True indel: indel (<= 5bp) 1428916 1429868 194642 195594 CM091752.1 scf7180000184099 99.9 True fake: scaffold gap size wrong estimation (local) 1430602 1431572 196318 197288 CM091752.1 scf7180000184099 99.59 True indel: indel (> 5bp) 1431935 1432465 197660 198190 CM091752.1 scf7180000184099 99.62 True indel: indel (<= 5bp) 1432466 1433371 198192 199097 CM091752.1 scf7180000184099 99.56 True indel: indel (<= 5bp) 1433374 1434016 199098 199740 CM091752.1 scf7180000184099 100.0 True fake: scaffold gap size wrong estimation (local) 1435790 1437780 201300 203290 CM091752.1 scf7180000184099 99.55 True indel: indel (<= 5bp) 1438271 1439689 203783 205201 CM091752.1 scf7180000184099 99.51 True local misassembly 1440637 1441280 206151 206794 CM091752.1 scf7180000184099 99.22 True local misassembly 1442372 1443150 206795 207573 CM091752.1 scf7180000184099 99.1 True indel: indel (<= 5bp) 1443552 1446059 207973 210480 CM091752.1 scf7180000184099 99.36 True indel: indel (> 5bp) 1446075 1448637 210481 213043 CM091752.1 scf7180000184099 97.78 True indel: indel (> 5bp) 1449062 1450568 213456 214962 CM091752.1 scf7180000184099 99.07 True indel: indel (<= 5bp) 1450570 1451739 214963 216132 CM091752.1 scf7180000184099 99.91 True local misassembly 1452415 1453192 216435 217212 CM091752.1 scf7180000184099 99.36 True indel: indel (<= 5bp) 1453193 1454226 217214 218247 CM091752.1 scf7180000184099 99.71 True indel: stretch of mismatches 1454262 1454939 218283 218960 CM091752.1 scf7180000184099 99.41 True indel: indel (<= 5bp) 1454940 1455598 218962 219620 CM091752.1 scf7180000184099 99.85 True indel: indel (<= 5bp) 1456020 1456887 220044 220911 CM091752.1 scf7180000184099 99.31 True indel: indel (<= 5bp) 1456888 1459199 220913 223224 CM091752.1 scf7180000184099 99.65 True indel: indel (<= 5bp) 1459200 1459721 223226 223747 CM091752.1 scf7180000184099 99.81 True indel: indel (> 5bp) 1460104 1461093 224137 225126 CM091752.1 scf7180000184099 99.8 True indel: indel (> 5bp) 1461394 1461906 225414 225926 CM091752.1 scf7180000184099 96.3 True indel: indel (<= 5bp) 1461908 1464036 225927 228055 CM091752.1 scf7180000184099 99.3 True indel: indel (<= 5bp) 1464038 1464730 228056 228748 CM091752.1 scf7180000184099 98.41 True local misassembly 1465670 1466362 228985 229677 CM091752.1 scf7180000184099 99.42 True indel: stretch of mismatches 1466542 1467514 229857 230829 CM091752.1 scf7180000184099 99.28 True indel: stretch of mismatches 1467986 1468516 231301 231831 CM091752.1 scf7180000184099 100.0 True local misassembly 1469292 1470361 232591 233660 CM091752.1 scf7180000184099 99.63 True indel: indel (<= 5bp) 1470366 1471946 233661 235241 CM091752.1 scf7180000184099 99.62 True indel: indel (<= 5bp) 1471947 1473888 235245 237186 CM091752.1 scf7180000184099 99.28 True local misassembly 1474413 1477955 237713 241255 CM091752.1 scf7180000184099 99.83 True indel: stretch of mismatches 1477987 1481099 241287 244399 CM091752.1 scf7180000184099 99.71 True fake: scaffold gap size wrong estimation (local) 1481757 1486631 244963 249878 CM091752.1 scf7180000184099 98.25 True fake: scaffold gap size wrong estimation (local) 1486671 1508584 249967 271740 CM091752.1 scf7180000184099 97.75 True fake: scaffold gap size wrong estimation (local) 1509049 1511686 271953 274588 CM091752.1 scf7180000184099 99.24 True fake: scaffold gap size wrong estimation (local) 1512861 1513778 275413 276330 CM091752.1 scf7180000184099 99.67 True fake: scaffold gap size wrong estimation (local) 1515112 1515986 277370 278244 CM091752.1 scf7180000184099 98.4 True CONTIG scf7180000184099 278299 correct CONTIG scf7180000184100 66324 unaligned 257609 259043 2914 1480 CM091763.1 scf7180000184101 99.79 True fake: scaffold gap size wrong estimation (local) 254126 256248 6308 4186 CM091763.1 scf7180000184101 99.95 True fake: scaffold gap size wrong estimation (local) 252875 253580 7657 6952 CM091763.1 scf7180000184101 96.88 True local misassembly 251596 252757 8819 7658 CM091763.1 scf7180000184101 98.28 True fake: scaffold gap size wrong estimation (local) 249634 250379 10291 9546 CM091763.1 scf7180000184101 97.05 True local misassembly 248060 249102 11334 10292 CM091763.1 scf7180000184101 100.0 True fake: scaffold gap size wrong estimation (local) 210738 247680 48965 12476 CM091763.1 scf7180000184101 98.6 True relocation, inconsistency = 9377 198581 201360 51745 48966 CM091763.1 scf7180000184101 99.98 True fake: scaffold gap size wrong estimation (local) 195512 198202 54572 51881 CM091763.1 scf7180000184101 99.96 True fake: scaffold gap size wrong estimation (local) 187146 195360 62896 54680 CM091763.1 scf7180000184101 99.94 True fake: scaffold gap size wrong estimation (local) 171281 186386 78032 63387 CM091763.1 scf7180000184101 96.72 True fake: not a misassembly (possible transposable element) 1372054 1373501 79830 78388 CM091760.1 scf7180000184101 98.9 True fake: not a misassembly (possible transposable element) 168624 170441 81668 79851 CM091763.1 scf7180000184101 99.94 True CONTIG scf7180000184101 83469 misassembled 933111 933842 1880 1149 CM091764.1 scf7180000184102 96.45 True fake: scaffold gap size wrong estimation (local) 931822 932626 3376 2572 CM091764.1 scf7180000184102 100.0 True fake: scaffold gap size wrong estimation (local) 930889 931821 5354 4422 CM091764.1 scf7180000184102 99.89 True fake: scaffold gap size wrong estimation (local) 927742 930888 8574 5428 CM091764.1 scf7180000184102 99.24 True fake: scaffold gap size wrong estimation (local) 926497 927522 9803 8778 CM091764.1 scf7180000184102 99.9 True fake: scaffold gap size wrong estimation (local) 924030 924601 11813 11242 CM091764.1 scf7180000184102 99.65 True fake: scaffold gap size wrong estimation (local) 918978 922950 16889 12908 CM091764.1 scf7180000184102 99.9 True fake: scaffold gap size wrong estimation (local) 903593 918341 31702 17237 CM091764.1 scf7180000184102 97.86 True fake: scaffold gap size wrong estimation (local) 900730 903198 34348 31880 CM091764.1 scf7180000184102 99.8 True fake: scaffold gap size wrong estimation (local) 899247 900581 35842 34525 CM091764.1 scf7180000184102 98.51 True CONTIG scf7180000184102 35842 correct 16111756 16112266 518 1 CM091758.1 scf7180000184103 98.59 True fake: scaffold gap size wrong estimation (local) 16109817 16110427 2641 2031 CM091758.1 scf7180000184103 100.0 True relocation, scaffold gap is present, inconsistency = 642279 15463380 15466736 3443 6803 CM091758.1 scf7180000184103 99.4 True fake: scaffold gap size wrong estimation (local) 15467144 15468060 7240 8156 CM091758.1 scf7180000184103 98.15 True indel: indel (<= 5bp) 15468061 15469175 8162 9276 CM091758.1 scf7180000184103 97.94 True fake: scaffold gap size wrong estimation (local) 15469612 15471135 9464 10987 CM091758.1 scf7180000184103 99.87 True indel: indel (<= 5bp) 15471136 15472512 10989 12365 CM091758.1 scf7180000184103 99.85 True indel: indel (<= 5bp) 15472514 15478013 12366 17865 CM091758.1 scf7180000184103 99.45 True local misassembly 15478517 15479076 17866 18425 CM091758.1 scf7180000184103 96.43 True local misassembly 15479275 15479916 18426 19067 CM091758.1 scf7180000184103 96.42 True fake: scaffold gap size wrong estimation (local) 15479917 15482503 19102 21688 CM091758.1 scf7180000184103 97.84 True fake: scaffold gap size wrong estimation (local) 15483184 15491897 22130 31102 CM091758.1 scf7180000184103 96.27 True translocation 4040016 4042432 31103 33516 CM091768.1 scf7180000184103 99.53 True fake: scaffold gap size wrong estimation (local) 4043091 4065077 33827 55401 CM091768.1 scf7180000184103 97.99 True relocation, inconsistency = 13538 4078616 4081458 55402 58244 CM091768.1 scf7180000184103 99.97 True local misassembly 4082023 4084844 58245 61066 CM091768.1 scf7180000184103 100.0 True indel: indel (<= 5bp) 4084845 4086650 61068 62873 CM091768.1 scf7180000184103 100.0 True fake: scaffold gap size wrong estimation (local) 4086651 4089086 63069 65504 CM091768.1 scf7180000184103 100.0 True indel: indel (<= 5bp) 4089089 4090262 65505 66678 CM091768.1 scf7180000184103 98.21 True fake: scaffold gap size wrong estimation (local) 4091238 4092364 67235 68361 CM091768.1 scf7180000184103 100.0 True indel: indel (<= 5bp) 4092365 4093232 68363 69230 CM091768.1 scf7180000184103 100.0 True fake: scaffold gap size wrong estimation (local) 4093060 4095387 69575 71902 CM091768.1 scf7180000184103 99.91 True fake: scaffold gap size wrong estimation (local) 4096362 4097087 72809 73534 CM091768.1 scf7180000184103 96.56 True CONTIG scf7180000184103 73798 misassembled CONTIG scf7180000184104 16952 unaligned 970540 972192 1 1642 CM091764.1 scf7180000184105 99.09 True fake: scaffold gap size wrong estimation (local) 972797 975075 2473 4751 CM091764.1 scf7180000184105 99.74 True fake: scaffold gap size wrong estimation (local) 975334 976263 5118 6047 CM091764.1 scf7180000184105 98.39 True translocation, scaffold gap is present 4770148 4771262 7402 8516 CM091768.1 scf7180000184105 100.0 True fake: scaffold gap size wrong estimation (local) 4771263 4771997 8565 9299 CM091768.1 scf7180000184105 99.86 True local misassembly 4772279 4774655 9300 11676 CM091768.1 scf7180000184105 98.4 True indel: indel (> 5bp) 4774764 4776524 11802 13562 CM091768.1 scf7180000184105 98.86 True fake: scaffold gap size wrong estimation (local) 4776693 4794663 15669 33545 CM091768.1 scf7180000184105 98.39 True fake: scaffold gap size wrong estimation (local) 4801163 4803545 34101 36483 CM091768.1 scf7180000184105 99.96 True indel: indel (<= 5bp) 4803550 4808227 36484 41161 CM091768.1 scf7180000184105 99.98 True indel: indel (<= 5bp) 4808231 4808853 41162 41784 CM091768.1 scf7180000184105 100.0 True fake: scaffold gap size wrong estimation (local) 4808907 4815857 42522 49472 CM091768.1 scf7180000184105 100.0 True fake: scaffold gap size wrong estimation (local) 4816653 4817512 49848 50707 CM091768.1 scf7180000184105 100.0 True translocation, scaffold gap is present 9148181 9243816 146340 50728 CM091765.1 scf7180000184105 99.5 True fake: scaffold gap size wrong estimation (local) 9069349 9148018 224966 146486 CM091765.1 scf7180000184105 99.4 True fake: scaffold gap size wrong estimation (local) 8979357 9069082 314600 225169 CM091765.1 scf7180000184105 98.53 True fake: scaffold gap size wrong estimation (local) 8945627 8979206 348002 314743 CM091765.1 scf7180000184105 98.47 True indel: indel (<= 5bp) 8914145 8945555 379551 348071 CM091765.1 scf7180000184105 99.32 True indel: indel (> 5bp) 8638144 8914126 654200 379563 CM091765.1 scf7180000184105 98.73 True translocation 14402297 14404988 654201 656899 CM091754.1 scf7180000184105 99.52 True CONTIG scf7180000184105 656899 misassembled 2638961 2639488 1661 1134 CM091761.1 scf7180000184106 99.81 True fake: scaffold gap size wrong estimation (local) 2635389 2637383 4979 2985 CM091761.1 scf7180000184106 99.8 True fake: scaffold gap size wrong estimation (local) 2632070 2634439 7864 5484 CM091761.1 scf7180000184106 99.37 True CONTIG scf7180000184106 7864 correct 41327 44925 573 4342 CM091768.1 scf7180000184107 97.15 True fake: scaffold gap size wrong estimation (local) 45188 50017 4470 9453 CM091768.1 scf7180000184107 98.17 True fake: scaffold gap size wrong estimation (local) 50908 51464 10377 10933 CM091768.1 scf7180000184107 99.82 True fake: scaffold gap size wrong estimation (local) 55220 116200 13082 72061 CM091768.1 scf7180000184107 96.3 True fake: scaffold gap size wrong estimation (local) 116700 167215 72120 122457 CM091768.1 scf7180000184107 99.5 True relocation, inconsistency = 31644 199108 449233 122706 372630 CM091768.1 scf7180000184107 99.67 True indel: indel (> 5bp) 449342 686999 372759 610413 CM091768.1 scf7180000184107 99.46 True fake: scaffold gap size wrong estimation (local) 687758 776723 611606 700576 CM091768.1 scf7180000184107 99.67 True local misassembly 777202 834391 700779 757237 CM091768.1 scf7180000184107 97.59 True CONTIG scf7180000184107 757245 misassembled 1848901 1859658 1 10422 CM091755.1 scf7180000184108 95.63 True fake: scaffold gap size wrong estimation (local) 1860062 1860750 10661 11349 CM091755.1 scf7180000184108 99.71 True indel: indel (<= 5bp) 1860755 1862216 11350 12811 CM091755.1 scf7180000184108 99.73 True fake: scaffold gap size wrong estimation (local) 1862886 1863701 13333 14148 CM091755.1 scf7180000184108 98.77 True indel: indel (<= 5bp) 1863706 1864757 14149 15200 CM091755.1 scf7180000184108 99.81 True indel: indel (<= 5bp) 1864758 1865841 15202 16285 CM091755.1 scf7180000184108 99.63 True indel: indel (<= 5bp) 1865901 1867034 16340 17473 CM091755.1 scf7180000184108 99.03 True fake: scaffold gap size wrong estimation (local) 1867806 1870310 17796 20300 CM091755.1 scf7180000184108 99.8 True indel: indel (<= 5bp) 1870311 1872173 20302 22164 CM091755.1 scf7180000184108 99.52 True fake: scaffold gap size wrong estimation (local) 1872356 1877911 22322 27666 CM091755.1 scf7180000184108 95.53 True fake: scaffold gap size wrong estimation (local) 1878457 1891092 27735 40120 CM091755.1 scf7180000184108 97.68 True fake: scaffold gap size wrong estimation (local) 1891200 1906507 40562 55471 CM091755.1 scf7180000184108 96.71 True fake: scaffold gap size wrong estimation (local) 1906673 1918645 55674 67536 CM091755.1 scf7180000184108 98.26 True fake: scaffold gap size wrong estimation (local) 1919016 1936939 67557 85869 CM091755.1 scf7180000184108 97.7 True fake: scaffold gap size wrong estimation (local) 1940132 1945781 87993 93627 CM091755.1 scf7180000184108 98.99 True local misassembly 1946801 1947863 95054 96116 CM091755.1 scf7180000184108 95.39 True fake: scaffold gap size wrong estimation (local) 1949166 2061622 96869 209196 CM091755.1 scf7180000184108 99.6 True indel: indel (> 5bp) 2061665 2075910 209247 223502 CM091755.1 scf7180000184108 99.61 True fake: scaffold gap size wrong estimation (local) 2076115 2187407 223695 334535 CM091755.1 scf7180000184108 99.18 True local misassembly 2188090 2256937 334741 402725 CM091755.1 scf7180000184108 98.53 True fake: scaffold gap size wrong estimation (local) 2257079 2429689 402824 575251 CM091755.1 scf7180000184108 98.8 True fake: scaffold gap size wrong estimation (local) 2431329 2431916 576391 576978 CM091755.1 scf7180000184108 98.64 True indel: indel (> 5bp) 2432210 2434995 577282 580067 CM091755.1 scf7180000184108 99.46 True indel: indel (> 5bp) 2435007 2436703 580068 581764 CM091755.1 scf7180000184108 99.59 True local misassembly 2437256 2438245 582294 583283 CM091755.1 scf7180000184108 99.29 True fake: scaffold gap size wrong estimation (local) 2438454 2494545 583860 639885 CM091755.1 scf7180000184108 99.6 True fake: scaffold gap size wrong estimation (local) 2496199 2591542 642018 737221 CM091755.1 scf7180000184108 99.62 True fake: scaffold gap size wrong estimation (local) 2591727 2593672 737329 739280 CM091755.1 scf7180000184108 98.82 True fake: scaffold gap size wrong estimation (local) 2593824 2596446 739379 742001 CM091755.1 scf7180000184108 99.43 True fake: scaffold gap size wrong estimation (local) 2597150 2604415 742401 749626 CM091755.1 scf7180000184108 98.67 True fake: scaffold gap size wrong estimation (local) 2604656 2607506 749841 752692 CM091755.1 scf7180000184108 99.79 True fake: scaffold gap size wrong estimation (local) 2607949 2702481 753007 847564 CM091755.1 scf7180000184108 99.74 True fake: scaffold gap size wrong estimation (local) 2702771 2740328 847715 885230 CM091755.1 scf7180000184108 99.87 True CONTIG scf7180000184108 885853 correct 4167453 4174975 2242 9684 CM091754.1 scf7180000184109 98.88 True fake: scaffold gap size wrong estimation (local) 4176674 4179898 10223 13448 CM091754.1 scf7180000184109 99.75 True fake: scaffold gap size wrong estimation (local) 4180628 4194358 14566 28579 CM091754.1 scf7180000184109 98.17 True relocation, scaffold gap is present, inconsistency = 17798 4161032 4161877 30377 29532 CM091754.1 scf7180000184109 100.0 True fake: scaffold gap size wrong estimation (local) 4160291 4160900 31078 30469 CM091754.1 scf7180000184109 99.84 True fake: scaffold gap size wrong estimation (local) 4154651 4158545 34994 31099 CM091754.1 scf7180000184109 99.97 True local misassembly 4158696 4160332 36651 35015 CM091754.1 scf7180000184109 99.89 True fake: not a misassembly (possible transposable element) 2603012 2607496 36652 41139 CM091753.1 scf7180000184109 99.51 True fake: not a misassembly (possible transposable element) 4122148 4155020 73746 41217 CM091754.1 scf7180000184109 98.89 True fake: scaffold gap size wrong estimation (local) 4029875 4120653 164802 73941 CM091754.1 scf7180000184109 99.92 True fake: scaffold gap size wrong estimation (local) 4025126 4029690 169449 164973 CM091754.1 scf7180000184109 95.0 True fake: scaffold gap size wrong estimation (local) 4015464 4024441 178815 169839 CM091754.1 scf7180000184109 99.99 True fake: scaffold gap size wrong estimation (local) 3991641 4015198 202452 178903 CM091754.1 scf7180000184109 99.95 True fake: scaffold gap size wrong estimation (local) 3988476 3990820 204884 202540 CM091754.1 scf7180000184109 100.0 True CONTIG scf7180000184109 204891 misassembled 4373700 4376549 3170 321 CM091754.1 scf7180000184110 99.93 True fake: scaffold gap size wrong estimation (local) 4362595 4373595 13936 3271 CM091754.1 scf7180000184110 96.91 True fake: scaffold gap size wrong estimation (local) 4358653 4361744 17441 14351 CM091754.1 scf7180000184110 99.94 True fake: scaffold gap size wrong estimation (local) 4354719 4357588 20919 18017 CM091754.1 scf7180000184110 99.33 True fake: scaffold gap size wrong estimation (local) 4352340 4354094 22841 21076 CM091754.1 scf7180000184110 99.59 True relocation, inconsistency = 427656 4787382 4800735 28473 41720 CM091754.1 scf7180000184110 99.2 True fake: scaffold gap size wrong estimation (local) 4801074 4838328 41985 79245 CM091754.1 scf7180000184110 99.91 True fake: scaffold gap size wrong estimation (local) 4839083 4865221 79822 105960 CM091754.1 scf7180000184110 99.97 True fake: scaffold gap size wrong estimation (local) 4865371 4882278 106090 122969 CM091754.1 scf7180000184110 99.82 True fake: scaffold gap size wrong estimation (local) 4882496 4914800 123108 155472 CM091754.1 scf7180000184110 99.81 True indel: indel (> 5bp) 4914931 4919906 155623 160598 CM091754.1 scf7180000184110 100.0 True fake: scaffold gap size wrong estimation (local) 4920172 4972026 160718 212142 CM091754.1 scf7180000184110 99.13 True fake: scaffold gap size wrong estimation (local) 4972405 4981943 212235 221520 CM091754.1 scf7180000184110 97.28 True fake: scaffold gap size wrong estimation (local) 4982448 5002955 221625 241949 CM091754.1 scf7180000184110 99.06 True fake: scaffold gap size wrong estimation (local) 5003833 5009100 242516 247783 CM091754.1 scf7180000184110 100.0 True fake: scaffold gap size wrong estimation (local) 5009322 5012818 247939 251435 CM091754.1 scf7180000184110 100.0 True fake: scaffold gap size wrong estimation (local) 5013057 5019915 251648 258482 CM091754.1 scf7180000184110 99.65 True CONTIG scf7180000184110 258482 misassembled 2517241 2550357 34795 1834 CM091754.1 scf7180000184111 98.56 True local misassembly 2512899 2517006 39034 34918 CM091754.1 scf7180000184111 99.17 True fake: scaffold gap size wrong estimation (local) 2511272 2512614 40511 39169 CM091754.1 scf7180000184111 99.4 True indel: indel (<= 5bp) 2510262 2511271 41522 40513 CM091754.1 scf7180000184111 99.7 True fake: scaffold gap size wrong estimation (local) 2504881 2509519 46620 41988 CM091754.1 scf7180000184111 98.04 True fake: scaffold gap size wrong estimation (local) 2495179 2504485 56222 46813 CM091754.1 scf7180000184111 97.68 True fake: scaffold gap size wrong estimation (local) 2493135 2494982 58236 56378 CM091754.1 scf7180000184111 99.35 True fake: scaffold gap size wrong estimation (local) 2491555 2492296 59665 58924 CM091754.1 scf7180000184111 100.0 True indel: indel (> 5bp) 2490236 2491277 60998 59957 CM091754.1 scf7180000184111 99.81 True fake: scaffold gap size wrong estimation (local) 2486336 2487654 64155 62837 CM091754.1 scf7180000184111 99.39 True local misassembly 2484991 2485746 64911 64156 CM091754.1 scf7180000184111 97.89 True fake: scaffold gap size wrong estimation (local) 2480723 2483567 69237 66391 CM091754.1 scf7180000184111 99.58 True local misassembly 2483562 2484176 69886 69258 CM091754.1 scf7180000184111 96.51 True fake: scaffold gap size wrong estimation (local) 2477551 2480825 73201 69907 CM091754.1 scf7180000184111 98.69 True fake: scaffold gap size wrong estimation (local) 2475923 2476942 74784 73765 CM091754.1 scf7180000184111 99.71 True indel: indel (<= 5bp) 2474581 2475425 76124 75280 CM091754.1 scf7180000184111 98.93 True indel: indel (<= 5bp) 2472532 2474420 78175 76287 CM091754.1 scf7180000184111 99.15 True fake: scaffold gap size wrong estimation (local) 2468815 2469539 80425 79701 CM091754.1 scf7180000184111 99.59 True indel: stretch of mismatches 2468107 2468692 81133 80548 CM091754.1 scf7180000184111 99.66 True fake: scaffold gap size wrong estimation (local) 2465718 2466838 83737 82617 CM091754.1 scf7180000184111 99.2 True indel: indel (> 5bp) 2464646 2465717 84820 83749 CM091754.1 scf7180000184111 99.35 True indel: indel (<= 5bp) 2463970 2464642 85493 84821 CM091754.1 scf7180000184111 99.11 True local misassembly 2462434 2463231 87032 86235 CM091754.1 scf7180000184111 99.75 True indel: indel (<= 5bp) 2461809 2462433 87658 87034 CM091754.1 scf7180000184111 99.68 True indel: indel (<= 5bp) 2460912 2461807 88554 87659 CM091754.1 scf7180000184111 98.44 True local misassembly 2458828 2460352 90143 88619 CM091754.1 scf7180000184111 99.15 True fake: scaffold gap size wrong estimation (local) 2457434 2458541 91556 90449 CM091754.1 scf7180000184111 99.37 True fake: scaffold gap size wrong estimation (local) 2456269 2456940 92489 91818 CM091754.1 scf7180000184111 98.81 True fake: scaffold gap size wrong estimation (local) 2454095 2454911 94561 93745 CM091754.1 scf7180000184111 99.39 True fake: scaffold gap size wrong estimation (local) 2449595 2450596 98212 97211 CM091754.1 scf7180000184111 99.7 True indel: indel (<= 5bp) 2448724 2449593 99082 98213 CM091754.1 scf7180000184111 98.97 True fake: scaffold gap size wrong estimation (local) 2445543 2446633 101913 100821 CM091754.1 scf7180000184111 99.36 True fake: scaffold gap size wrong estimation (local) 2444563 2445300 102936 102198 CM091754.1 scf7180000184111 98.92 True fake: scaffold gap size wrong estimation (local) 2393346 2443620 152842 103124 CM091754.1 scf7180000184111 97.59 True CONTIG scf7180000184111 152865 correct CONTIG scf7180000184112 76969 unaligned 15009243 15042277 1 33025 CM091758.1 scf7180000184113 99.69 True fake: scaffold gap size wrong estimation (local) 15042548 15044464 33201 35116 CM091758.1 scf7180000184113 99.43 True fake: scaffold gap size wrong estimation (local) 15044769 15058396 35422 49106 CM091758.1 scf7180000184113 98.77 True fake: scaffold gap size wrong estimation (local) 15059009 15073343 49150 63209 CM091758.1 scf7180000184113 96.96 True fake: scaffold gap size wrong estimation (local) 15073505 15083473 63348 73338 CM091758.1 scf7180000184113 99.21 True fake: scaffold gap size wrong estimation (local) 15083733 15100334 73584 89673 CM091758.1 scf7180000184113 95.91 True fake: scaffold gap size wrong estimation (local) 15100745 15103957 89935 93148 CM091758.1 scf7180000184113 99.38 True fake: scaffold gap size wrong estimation (local) 15104382 15105360 93433 94412 CM091758.1 scf7180000184113 99.18 True fake: scaffold gap size wrong estimation (local) 15107283 15108387 95367 96471 CM091758.1 scf7180000184113 99.19 True local misassembly 15109776 15111487 97869 99580 CM091758.1 scf7180000184113 99.18 True indel: indel (<= 5bp) 15111488 15112274 99582 100368 CM091758.1 scf7180000184113 99.62 True local misassembly 15113910 15114642 101648 102380 CM091758.1 scf7180000184113 99.86 True fake: scaffold gap size wrong estimation (local) 15115054 15115771 102831 103548 CM091758.1 scf7180000184113 99.72 True indel: indel (<= 5bp) 15115772 15116671 103550 104449 CM091758.1 scf7180000184113 98.67 True fake: scaffold gap size wrong estimation (local) 15117177 15119566 104810 107177 CM091758.1 scf7180000184113 98.37 True fake: scaffold gap size wrong estimation (local) 15120497 15124738 107278 111475 CM091758.1 scf7180000184113 98.6 True fake: scaffold gap size wrong estimation (local) 15125097 15126037 111668 112608 CM091758.1 scf7180000184113 99.36 True indel: indel (<= 5bp) 15126039 15126581 112609 113151 CM091758.1 scf7180000184113 99.26 True indel: indel (<= 5bp) 15126583 15128453 113152 115022 CM091758.1 scf7180000184113 99.68 True local misassembly 15128730 15129391 115023 115684 CM091758.1 scf7180000184113 98.04 True indel: indel (<= 5bp) 15129392 15130292 115688 116588 CM091758.1 scf7180000184113 97.67 True indel: indel (<= 5bp) 15130294 15130867 116589 117162 CM091758.1 scf7180000184113 99.65 True fake: scaffold gap size wrong estimation (local) 15130931 15131900 117251 118220 CM091758.1 scf7180000184113 99.59 True fake: scaffold gap size wrong estimation (local) 15133344 15134400 118722 119778 CM091758.1 scf7180000184113 99.72 True indel: indel (<= 5bp) 15134717 15135531 120097 120911 CM091758.1 scf7180000184113 99.39 True fake: scaffold gap size wrong estimation (local) 15137861 15138707 122879 123725 CM091758.1 scf7180000184113 100.0 True indel: indel (<= 5bp) 15138708 15139924 123727 124943 CM091758.1 scf7180000184113 99.67 True indel: indel (<= 5bp) 15139926 15140454 124944 125472 CM091758.1 scf7180000184113 99.43 True indel: indel (<= 5bp) 15140455 15142020 125474 127039 CM091758.1 scf7180000184113 99.74 True local misassembly 15143040 15143803 127419 128182 CM091758.1 scf7180000184113 97.77 True indel: indel (<= 5bp) 15143878 15145993 128254 130369 CM091758.1 scf7180000184113 99.57 True indel: indel (<= 5bp) 15145994 15147024 130371 131401 CM091758.1 scf7180000184113 99.61 True CONTIG scf7180000184113 131962 correct 7900797 7901837 2460 1424 CM091767.1 scf7180000184114 99.52 True fake: scaffold gap size wrong estimation (local) 7895814 7898563 5372 2599 CM091767.1 scf7180000184114 99.75 True relocation, scaffold gap is present, inconsistency = 8857 7885919 7886936 5393 6411 CM091767.1 scf7180000184114 99.8 True inversion, scaffold gap is present 7891861 7892625 8000 7236 CM091767.1 scf7180000184114 99.87 True CONTIG scf7180000184114 8000 misassembled 2935438 2936855 2453 3870 CM091752.1 scf7180000184115 99.86 True CONTIG scf7180000184115 3945 correct 16319 16910 1 592 CM091756.1 scf7180000184116 97.13 True translocation 16908508 16910162 3440 1815 CM091755.1 scf7180000184116 96.27 True fake: scaffold gap size wrong estimation (local) 16894651 16906688 17001 4980 CM091755.1 scf7180000184116 99.63 True fake: scaffold gap size wrong estimation (local) 16867944 16893667 43240 17637 CM091755.1 scf7180000184116 99.46 True fake: scaffold gap size wrong estimation (local) 16848707 16867762 62398 43376 CM091755.1 scf7180000184116 99.7 True fake: scaffold gap size wrong estimation (local) 16837633 16847742 73154 63279 CM091755.1 scf7180000184116 97.48 True fake: scaffold gap size wrong estimation (local) 16808871 16837129 101552 73552 CM091755.1 scf7180000184116 98.65 True fake: scaffold gap size wrong estimation (local) 16358185 16808664 551967 101839 CM091755.1 scf7180000184116 99.52 True fake: scaffold gap size wrong estimation (local) 16332253 16358082 577846 552050 CM091755.1 scf7180000184116 99.62 True fake: scaffold gap size wrong estimation (local) 16263593 16331764 646118 577985 CM091755.1 scf7180000184116 99.32 True indel: indel (> 5bp) 16244873 16263540 664856 646178 CM091755.1 scf7180000184116 99.51 True fake: scaffold gap size wrong estimation (local) 16206625 16244142 703929 665191 CM091755.1 scf7180000184116 95.8 True fake: scaffold gap size wrong estimation (local) 16185802 16206453 724797 704084 CM091755.1 scf7180000184116 99.11 True fake: scaffold gap size wrong estimation (local) 16168840 16185670 741771 724927 CM091755.1 scf7180000184116 99.64 True fake: scaffold gap size wrong estimation (local) 16141915 16168225 768445 742050 CM091755.1 scf7180000184116 98.72 True fake: scaffold gap size wrong estimation (local) 16138681 16141725 771541 768512 CM091755.1 scf7180000184116 99.38 True indel: indel (> 5bp) 16136782 16138652 773443 771584 CM091755.1 scf7180000184116 98.56 True fake: scaffold gap size wrong estimation (local) 16034253 16136666 875901 773539 CM091755.1 scf7180000184116 99.28 True fake: scaffold gap size wrong estimation (local) 16018588 16034349 892131 876403 CM091755.1 scf7180000184116 99.09 True fake: scaffold gap size wrong estimation (local) 16008465 16018454 902236 892233 CM091755.1 scf7180000184116 99.43 True fake: scaffold gap size wrong estimation (local) 15986664 16008251 923875 902374 CM091755.1 scf7180000184116 98.92 True fake: scaffold gap size wrong estimation (local) 15979144 15986378 931144 923997 CM091755.1 scf7180000184116 97.92 True fake: scaffold gap size wrong estimation (local) 15955066 15979069 955752 931702 CM091755.1 scf7180000184116 99.53 True fake: scaffold gap size wrong estimation (local) 15952390 15954777 958424 956025 CM091755.1 scf7180000184116 98.9 True relocation, inconsistency = 3164482 12725610 12787907 958425 1020711 CM091755.1 scf7180000184116 99.4 True fake: scaffold gap size wrong estimation (local) 12788127 12806952 1020790 1039649 CM091755.1 scf7180000184116 99.23 True relocation, inconsistency = 71805 12878758 12887858 1039650 1048747 CM091755.1 scf7180000184116 99.52 True indel: indel (> 5bp) 12887881 12901562 1048795 1062467 CM091755.1 scf7180000184116 99.34 True fake: not a misassembly (possible transposable element) 5728698 5730651 1064406 1062468 CM091768.1 scf7180000184116 98.54 True fake: not a misassembly (possible transposable element) 12901882 12952665 1064444 1114804 CM091755.1 scf7180000184116 98.29 True fake: scaffold gap size wrong estimation (local) 12952845 13044566 1114977 1206552 CM091755.1 scf7180000184116 99.12 True local misassembly 13045314 13050347 1207338 1212372 CM091755.1 scf7180000184116 99.7 True fake: scaffold gap size wrong estimation (local) 13054984 13057255 1214961 1217232 CM091755.1 scf7180000184116 99.87 True local misassembly 13059502 13061145 1217233 1218876 CM091755.1 scf7180000184116 99.7 True indel: indel (<= 5bp) 13061577 13062135 1219312 1219870 CM091755.1 scf7180000184116 100.0 True local misassembly 13062801 13063420 1220539 1221158 CM091755.1 scf7180000184116 99.68 True indel: stretch of mismatches 13063784 13064600 1221522 1222338 CM091755.1 scf7180000184116 99.63 True indel: indel (> 5bp) 13064959 13066103 1222686 1223830 CM091755.1 scf7180000184116 99.65 True indel: indel (<= 5bp) 13066104 13068798 1223832 1226526 CM091755.1 scf7180000184116 99.59 True indel: indel (<= 5bp) 13068799 13069592 1226528 1227321 CM091755.1 scf7180000184116 100.0 True indel: stretch of mismatches 13070077 13070906 1227806 1228635 CM091755.1 scf7180000184116 99.64 True local misassembly 13071927 13075282 1228951 1232306 CM091755.1 scf7180000184116 98.99 True local misassembly 13076059 13077960 1233088 1234989 CM091755.1 scf7180000184116 99.47 True local misassembly 13078508 13079232 1235536 1236260 CM091755.1 scf7180000184116 98.9 True indel: indel (> 5bp) 13079239 13080354 1236261 1237376 CM091755.1 scf7180000184116 99.73 True indel: indel (<= 5bp) 13080355 13081186 1237378 1238209 CM091755.1 scf7180000184116 99.76 True indel: indel (<= 5bp) 13081375 13082608 1238400 1239633 CM091755.1 scf7180000184116 99.92 True indel: indel (<= 5bp) 13082609 13083132 1239636 1240159 CM091755.1 scf7180000184116 99.43 True local misassembly 13084054 13085392 1241083 1242421 CM091755.1 scf7180000184116 99.63 True fake: scaffold gap size wrong estimation (local) 13086562 13087614 1243574 1244626 CM091755.1 scf7180000184116 99.91 True indel: indel (<= 5bp) 13087615 13090977 1244628 1247990 CM091755.1 scf7180000184116 99.85 True local misassembly 13091489 13092101 1248495 1249107 CM091755.1 scf7180000184116 99.51 True indel: stretch of mismatches 13092131 13092839 1249137 1249845 CM091755.1 scf7180000184116 99.72 True indel: indel (> 5bp) 13092848 13093839 1249846 1250837 CM091755.1 scf7180000184116 99.19 True indel: indel (<= 5bp) 13093895 13094573 1250891 1251569 CM091755.1 scf7180000184116 99.85 True indel: indel (<= 5bp) 13094979 13096956 1251976 1253953 CM091755.1 scf7180000184116 99.7 True indel: indel (<= 5bp) 13096958 13098029 1253954 1255025 CM091755.1 scf7180000184116 98.97 True indel: indel (<= 5bp) 13098030 13098703 1255027 1255700 CM091755.1 scf7180000184116 99.55 True indel: indel (<= 5bp) 13098705 13099750 1255701 1256746 CM091755.1 scf7180000184116 99.14 True indel: indel (<= 5bp) 13099751 13102713 1256748 1259710 CM091755.1 scf7180000184116 99.76 True indel: indel (> 5bp) 13102724 13105270 1259728 1262274 CM091755.1 scf7180000184116 99.69 True indel: indel (<= 5bp) 13105272 13105868 1262275 1262871 CM091755.1 scf7180000184116 100.0 True indel: indel (<= 5bp) 13105869 13106457 1262873 1263461 CM091755.1 scf7180000184116 99.66 True local misassembly 13107015 13107548 1264025 1264558 CM091755.1 scf7180000184116 99.44 True fake: scaffold gap size wrong estimation (local) 13108099 13208886 1265059 1365606 CM091755.1 scf7180000184116 98.88 True fake: scaffold gap size wrong estimation (local) 13209151 13258191 1365793 1414083 CM091755.1 scf7180000184116 97.88 True indel: indel (> 5bp) 13258234 13282015 1414167 1437883 CM091755.1 scf7180000184116 99.28 True fake: scaffold gap size wrong estimation (local) 13282592 13283194 1438383 1438985 CM091755.1 scf7180000184116 99.83 True indel: indel (<= 5bp) 13283417 13284078 1439206 1439867 CM091755.1 scf7180000184116 99.85 True indel: indel (<= 5bp) 13284285 13285198 1440075 1440988 CM091755.1 scf7180000184116 99.89 True indel: indel (> 5bp) 13285264 13286741 1440989 1442466 CM091755.1 scf7180000184116 99.86 True indel: indel (<= 5bp) 13286918 13287539 1442646 1443267 CM091755.1 scf7180000184116 99.68 True indel: indel (> 5bp) 13287722 13291384 1443431 1447093 CM091755.1 scf7180000184116 99.67 True indel: indel (<= 5bp) 13291471 13292682 1447177 1448388 CM091755.1 scf7180000184116 99.67 True indel: indel (> 5bp) 13292822 13293575 1448503 1449256 CM091755.1 scf7180000184116 99.2 True indel: indel (> 5bp) 13294051 13295708 1449726 1451383 CM091755.1 scf7180000184116 99.22 True indel: indel (<= 5bp) 13295709 13298580 1451387 1454258 CM091755.1 scf7180000184116 99.62 True local misassembly 13299559 13300111 1455234 1455786 CM091755.1 scf7180000184116 99.46 True fake: scaffold gap size wrong estimation (local) 13300707 13302325 1456360 1457978 CM091755.1 scf7180000184116 99.63 True local misassembly 13307697 13309062 1458381 1459746 CM091755.1 scf7180000184116 99.27 True indel: indel (<= 5bp) 13309094 13309792 1459780 1460478 CM091755.1 scf7180000184116 99.43 True indel: indel (<= 5bp) 13309880 13310645 1460568 1461333 CM091755.1 scf7180000184116 99.48 True fake: scaffold gap size wrong estimation (local) 13311260 13312098 1461896 1462734 CM091755.1 scf7180000184116 99.88 True local misassembly 13312375 13313652 1462778 1464055 CM091755.1 scf7180000184116 97.65 True indel: indel (<= 5bp) 13313653 13314559 1464057 1464963 CM091755.1 scf7180000184116 99.45 True indel: indel (> 5bp) 13314560 13315106 1464972 1465518 CM091755.1 scf7180000184116 96.89 True indel: indel (<= 5bp) 13315107 13316622 1465521 1467036 CM091755.1 scf7180000184116 99.87 True indel: indel (<= 5bp) 13316623 13318651 1467038 1469066 CM091755.1 scf7180000184116 99.66 True indel: indel (<= 5bp) 13318923 13319998 1469341 1470416 CM091755.1 scf7180000184116 99.54 True indel: indel (<= 5bp) 13320000 13320823 1470417 1471240 CM091755.1 scf7180000184116 99.88 True indel: indel (> 5bp) 13320928 13321516 1471335 1471923 CM091755.1 scf7180000184116 98.98 True indel: indel (<= 5bp) 13321517 13324596 1471925 1475004 CM091755.1 scf7180000184116 99.42 True indel: indel (<= 5bp) 13324597 13325883 1475006 1476292 CM091755.1 scf7180000184116 99.84 True indel: indel (<= 5bp) 13325884 13326467 1476294 1476877 CM091755.1 scf7180000184116 100.0 True indel: indel (<= 5bp) 13326470 13327294 1476878 1477702 CM091755.1 scf7180000184116 99.64 True indel: indel (<= 5bp) 13327295 13328326 1477704 1478735 CM091755.1 scf7180000184116 99.52 True indel: indel (<= 5bp) 13328327 13329317 1478737 1479727 CM091755.1 scf7180000184116 99.8 True indel: stretch of mismatches 13329456 13330034 1479866 1480444 CM091755.1 scf7180000184116 99.31 True local misassembly 13330861 13331562 1481273 1481974 CM091755.1 scf7180000184116 99.86 True local misassembly 13332336 13333283 1482746 1483693 CM091755.1 scf7180000184116 99.79 True fake: scaffold gap size wrong estimation (local) 13333284 13333792 1483804 1484312 CM091755.1 scf7180000184116 99.41 True fake: scaffold gap size wrong estimation (local) 13334992 13336112 1485487 1486607 CM091755.1 scf7180000184116 99.64 True indel: indel (<= 5bp) 13336113 13337196 1486610 1487693 CM091755.1 scf7180000184116 99.82 True local misassembly 13337806 13338707 1488310 1489211 CM091755.1 scf7180000184116 99.67 True local misassembly 13339374 13340049 1489875 1490550 CM091755.1 scf7180000184116 99.11 True indel: indel (<= 5bp) 13340050 13340881 1490552 1491383 CM091755.1 scf7180000184116 99.52 True local misassembly 13341767 13343404 1492268 1493905 CM091755.1 scf7180000184116 99.69 True indel: indel (> 5bp) 13343438 13343938 1493930 1494430 CM091755.1 scf7180000184116 99.6 True indel: stretch of mismatches 13344334 13345433 1494826 1495925 CM091755.1 scf7180000184116 99.91 True indel: indel (<= 5bp) 13345434 13346332 1495927 1496825 CM091755.1 scf7180000184116 99.89 True fake: scaffold gap size wrong estimation (local) 13347134 13351134 1497209 1501209 CM091755.1 scf7180000184116 99.63 True indel: indel (<= 5bp) 13351287 13352997 1501360 1503070 CM091755.1 scf7180000184116 99.88 True indel: indel (> 5bp) 13353176 13354872 1503287 1504983 CM091755.1 scf7180000184116 99.41 True indel: indel (<= 5bp) 13355066 13356400 1505179 1506513 CM091755.1 scf7180000184116 99.55 True local misassembly 13357172 13357962 1507287 1508077 CM091755.1 scf7180000184116 99.87 True indel: indel (<= 5bp) 13357965 13358677 1508078 1508790 CM091755.1 scf7180000184116 99.86 True indel: stretch of mismatches 13358737 13362425 1508850 1512538 CM091755.1 scf7180000184116 99.76 True local misassembly 13363691 13364219 1513788 1514316 CM091755.1 scf7180000184116 99.81 True indel: indel (<= 5bp) 13364597 13365617 1514698 1515718 CM091755.1 scf7180000184116 99.9 True indel: indel (<= 5bp) 13365618 13366189 1515720 1516291 CM091755.1 scf7180000184116 99.48 True indel: indel (<= 5bp) 13366194 13367358 1516292 1517456 CM091755.1 scf7180000184116 99.57 True indel: indel (<= 5bp) 13367359 13368707 1517458 1518806 CM091755.1 scf7180000184116 99.63 True fake: scaffold gap size wrong estimation (local) 13369254 13370002 1519191 1519939 CM091755.1 scf7180000184116 99.73 True local misassembly 13370705 13371281 1520648 1521224 CM091755.1 scf7180000184116 99.83 True indel: indel (<= 5bp) 13371435 13372889 1521373 1522827 CM091755.1 scf7180000184116 99.59 True indel: indel (<= 5bp) 13372890 13373644 1522830 1523584 CM091755.1 scf7180000184116 99.47 True indel: indel (<= 5bp) 13374021 13374971 1523965 1524915 CM091755.1 scf7180000184116 99.47 True indel: indel (<= 5bp) 13374972 13376116 1524917 1526061 CM091755.1 scf7180000184116 99.91 True indel: indel (> 5bp) 13376117 13377274 1526074 1527231 CM091755.1 scf7180000184116 99.83 True local misassembly 13378239 13379494 1528200 1529455 CM091755.1 scf7180000184116 99.68 True indel: indel (<= 5bp) 13379495 13380794 1529457 1530756 CM091755.1 scf7180000184116 99.23 True indel: indel (<= 5bp) 13380835 13381773 1530799 1531737 CM091755.1 scf7180000184116 99.79 True indel: stretch of mismatches 13381990 13383464 1531954 1533428 CM091755.1 scf7180000184116 99.66 True local misassembly 13384410 13386803 1534391 1536784 CM091755.1 scf7180000184116 99.75 True indel: indel (<= 5bp) 13387003 13387557 1536987 1537541 CM091755.1 scf7180000184116 99.46 True indel: indel (<= 5bp) 13387563 13388946 1537542 1538925 CM091755.1 scf7180000184116 99.42 True indel: indel (<= 5bp) 13388947 13389468 1538927 1539448 CM091755.1 scf7180000184116 100.0 True indel: indel (<= 5bp) 13389470 13392196 1539449 1542175 CM091755.1 scf7180000184116 99.82 True indel: indel (<= 5bp) 13392590 13395811 1542567 1545788 CM091755.1 scf7180000184116 99.63 True indel: indel (<= 5bp) 13395814 13397214 1545789 1547189 CM091755.1 scf7180000184116 99.71 True indel: indel (> 5bp) 13397215 13398206 1547197 1548188 CM091755.1 scf7180000184116 99.9 True indel: indel (> 5bp) 13398218 13400383 1548230 1550395 CM091755.1 scf7180000184116 99.63 True indel: indel (<= 5bp) 13400385 13401180 1550396 1551191 CM091755.1 scf7180000184116 99.37 True indel: indel (<= 5bp) 13401181 13405165 1551193 1555177 CM091755.1 scf7180000184116 99.72 True indel: indel (> 5bp) 13405166 13406266 1555186 1556286 CM091755.1 scf7180000184116 99.73 True local misassembly 13409969 13412394 1556287 1558712 CM091755.1 scf7180000184116 99.55 True indel: indel (<= 5bp) 13412396 13413059 1558713 1559376 CM091755.1 scf7180000184116 99.4 True indel: indel (<= 5bp) 13413179 13413852 1559491 1560164 CM091755.1 scf7180000184116 99.26 True indel: indel (<= 5bp) 13413854 13415478 1560165 1561789 CM091755.1 scf7180000184116 99.26 True indel: indel (<= 5bp) 13415480 13417212 1561790 1563522 CM091755.1 scf7180000184116 99.71 True local misassembly 13417949 13418659 1564265 1564975 CM091755.1 scf7180000184116 99.72 True indel: indel (<= 5bp) 13419022 13419758 1565335 1566071 CM091755.1 scf7180000184116 100.0 True local misassembly 13424037 13425925 1566072 1567960 CM091755.1 scf7180000184116 98.73 True indel: stretch of mismatches 13425945 13427139 1567980 1569174 CM091755.1 scf7180000184116 99.25 True fake: scaffold gap size wrong estimation (local) 13427140 13428125 1569204 1570189 CM091755.1 scf7180000184116 99.39 True indel: indel (<= 5bp) 13428279 13429111 1570344 1571176 CM091755.1 scf7180000184116 99.88 True indel: indel (<= 5bp) 13429487 13431661 1571557 1573731 CM091755.1 scf7180000184116 99.45 True indel: indel (<= 5bp) 13431795 13432337 1573862 1574404 CM091755.1 scf7180000184116 99.63 True indel: indel (<= 5bp) 13432691 13433228 1574760 1575297 CM091755.1 scf7180000184116 99.81 True indel: indel (<= 5bp) 13433235 13435071 1575308 1577144 CM091755.1 scf7180000184116 99.84 True indel: indel (<= 5bp) 13435072 13436274 1577146 1578348 CM091755.1 scf7180000184116 99.67 True indel: indel (> 5bp) 13436621 13437345 1578639 1579363 CM091755.1 scf7180000184116 99.45 True local misassembly 13439399 13440236 1581420 1582257 CM091755.1 scf7180000184116 99.88 True fake: scaffold gap size wrong estimation (local) 13440237 13441697 1582284 1583744 CM091755.1 scf7180000184116 99.86 True indel: indel (<= 5bp) 13441698 13442206 1583746 1584254 CM091755.1 scf7180000184116 99.61 True indel: indel (<= 5bp) 13442208 13443252 1584255 1585299 CM091755.1 scf7180000184116 99.81 True indel: indel (<= 5bp) 13443253 13443843 1585301 1585891 CM091755.1 scf7180000184116 99.15 True indel: indel (<= 5bp) 13443844 13446969 1585893 1589018 CM091755.1 scf7180000184116 99.78 True indel: indel (<= 5bp) 13446970 13447872 1589020 1589922 CM091755.1 scf7180000184116 99.89 True indel: indel (<= 5bp) 13447874 13448481 1589923 1590530 CM091755.1 scf7180000184116 99.84 True indel: indel (<= 5bp) 13448703 13449607 1590755 1591659 CM091755.1 scf7180000184116 99.34 True indel: indel (<= 5bp) 13449703 13450472 1591760 1592529 CM091755.1 scf7180000184116 99.74 True indel: indel (<= 5bp) 13450479 13456043 1592537 1598101 CM091755.1 scf7180000184116 99.42 True indel: indel (> 5bp) 13456044 13457123 1598109 1599188 CM091755.1 scf7180000184116 99.72 True fake: scaffold gap size wrong estimation (local) 13457389 13458592 1599483 1600686 CM091755.1 scf7180000184116 99.83 True indel: indel (<= 5bp) 13458613 13459731 1600705 1601823 CM091755.1 scf7180000184116 99.64 True indel: indel (<= 5bp) 13459733 13460355 1601824 1602446 CM091755.1 scf7180000184116 100.0 True indel: indel (> 5bp) 13460390 13461623 1602447 1603680 CM091755.1 scf7180000184116 99.68 True indel: indel (<= 5bp) 13461626 13462196 1603681 1604251 CM091755.1 scf7180000184116 100.0 True indel: indel (<= 5bp) 13462478 13463255 1604535 1605312 CM091755.1 scf7180000184116 99.49 True local misassembly 13463894 13465871 1605950 1607927 CM091755.1 scf7180000184116 99.8 True indel: stretch of mismatches 13466266 13467698 1608322 1609754 CM091755.1 scf7180000184116 99.3 True fake: scaffold gap size wrong estimation (local) 13467973 13470491 1610030 1612548 CM091755.1 scf7180000184116 99.68 True fake: scaffold gap size wrong estimation (local) 13470540 13471042 1612608 1613110 CM091755.1 scf7180000184116 97.81 True indel: indel (<= 5bp) 13471096 13471754 1613165 1613823 CM091755.1 scf7180000184116 99.39 True fake: scaffold gap size wrong estimation (local) 13471809 13484754 1613860 1626844 CM091755.1 scf7180000184116 99.06 True fake: scaffold gap size wrong estimation (local) 13484881 13561423 1626947 1703513 CM091755.1 scf7180000184116 99.33 True fake: scaffold gap size wrong estimation (local) 13561682 13583102 1703736 1725108 CM091755.1 scf7180000184116 99.21 True fake: scaffold gap size wrong estimation (local) 13583278 13601915 1725208 1743885 CM091755.1 scf7180000184116 99.06 True indel: indel (> 5bp) 13602077 13646602 1744000 1788517 CM091755.1 scf7180000184116 98.8 True indel: indel (> 5bp) 13646699 13660973 1788642 1802827 CM091755.1 scf7180000184116 98.86 True relocation, scaffold gap is present, inconsistency = 27056 13688073 13707720 1822540 1802871 CM091755.1 scf7180000184116 99.35 True indel: indel (<= 5bp) 13683928 13688017 1826685 1822594 CM091755.1 scf7180000184116 98.7 True fake: scaffold gap size wrong estimation (local) 13676108 13683776 1834573 1826881 CM091755.1 scf7180000184116 99.01 True fake: scaffold gap size wrong estimation (local) 13672791 13676005 1837899 1834656 CM091755.1 scf7180000184116 98.86 True CONTIG scf7180000184116 1841141 misassembled 367694 369564 30 1873 CM091760.1 scf7180000184117 98.4 True fake: scaffold gap size wrong estimation (local) 369783 370303 2588 3108 CM091760.1 scf7180000184117 99.42 True fake: scaffold gap size wrong estimation (local) 370858 373176 3413 5743 CM091760.1 scf7180000184117 99.57 True fake: scaffold gap size wrong estimation (local) 374265 395780 6815 28111 CM091760.1 scf7180000184117 98.71 True fake: scaffold gap size wrong estimation (local) 395922 418356 28246 50674 CM091760.1 scf7180000184117 99.89 True CONTIG scf7180000184117 50674 correct 3088259 3089676 1163 2577 CM091752.1 scf7180000184118 99.29 True fake: scaffold gap size wrong estimation (local) 3090342 3090945 3530 4133 CM091752.1 scf7180000184118 99.83 True fake: scaffold gap size wrong estimation (local) 3092275 3093236 5656 6609 CM091752.1 scf7180000184118 96.58 True translocation, scaffold gap is present 10398311 10421386 6662 29543 CM091766.1 scf7180000184118 98.94 True fake: scaffold gap size wrong estimation (local) 10421794 10506395 29999 114704 CM091766.1 scf7180000184118 99.6 True fake: scaffold gap size wrong estimation (local) 10506542 10603770 114864 211909 CM091766.1 scf7180000184118 99.39 True fake: scaffold gap size wrong estimation (local) 10605219 10607292 212845 214918 CM091766.1 scf7180000184118 99.52 True indel: indel (<= 5bp) 10607293 10610270 214920 217897 CM091766.1 scf7180000184118 99.63 True fake: scaffold gap size wrong estimation (local) 10610709 10623807 218683 231779 CM091766.1 scf7180000184118 99.54 True indel: indel (> 5bp) 10623881 10691024 231900 298900 CM091766.1 scf7180000184118 99.28 True fake: scaffold gap size wrong estimation (local) 10692034 10693161 299506 300635 CM091766.1 scf7180000184118 99.37 True fake: scaffold gap size wrong estimation (local) 10694057 10702294 300947 309149 CM091766.1 scf7180000184118 99.08 True fake: scaffold gap size wrong estimation (local) 10702996 10704755 309552 311324 CM091766.1 scf7180000184118 99.04 True fake: scaffold gap size wrong estimation (local) 10705010 10735948 311580 342257 CM091766.1 scf7180000184118 97.79 True fake: scaffold gap size wrong estimation (local) 10736413 10835926 342979 442675 CM091766.1 scf7180000184118 99.61 True translocation 1398133 1400045 444588 442676 CM091762.1 scf7180000184118 99.74 True CONTIG scf7180000184118 444588 misassembled 8597785 8599480 1696 1 CM091766.1 scf7180000184119 99.71 True translocation 3578725 3579342 2313 1697 CM091768.1 scf7180000184119 99.85 True fake: not a misassembly (possible transposable element) 4977298 4978725 2774 4199 CM091768.1 scf7180000184119 99.02 True fake: not a misassembly (possible transposable element) 3574962 3575745 4983 4200 CM091768.1 scf7180000184119 98.09 True fake: scaffold gap size wrong estimation (local) 3571006 3572307 6386 5085 CM091768.1 scf7180000184119 99.92 True fake: scaffold gap size wrong estimation (local) 3567492 3568267 8268 7493 CM091768.1 scf7180000184119 100.0 True CONTIG scf7180000184119 8629 misassembled 9203995 9204512 519 1 CM091763.1 scf7180000184120 98.84 True fake: scaffold gap size wrong estimation (local) 9201903 9202816 3234 2320 CM091763.1 scf7180000184120 99.89 True fake: scaffold gap size wrong estimation (local) 9199574 9200832 5750 4523 CM091763.1 scf7180000184120 95.93 True fake: scaffold gap size wrong estimation (local) 9197561 9198479 8079 7163 CM091763.1 scf7180000184120 97.82 True relocation, scaffold gap is present, inconsistency = 15112 9180921 9182415 9608 8113 CM091763.1 scf7180000184120 99.47 True fake: scaffold gap size wrong estimation (local) 9176471 9180175 13687 10002 CM091763.1 scf7180000184120 98.43 True fake: scaffold gap size wrong estimation (local) 9172534 9176340 18316 14487 CM091763.1 scf7180000184120 99.24 True fake: scaffold gap size wrong estimation (extensive) 9162632 9163947 20097 18782 CM091763.1 scf7180000184120 99.16 True fake: not a misassembly (possible transposable element) 9136837 9138397 21678 20118 CM091763.1 scf7180000184120 99.42 True fake: not a misassembly (possible transposable element) 9160118 9161084 22645 21679 CM091763.1 scf7180000184120 98.26 True local misassembly 9157916 9159877 24607 22646 CM091763.1 scf7180000184120 99.95 True CONTIG scf7180000184120 24607 misassembled 3729751 3730928 1338 161 CM091752.1 scf7180000184121 99.83 True fake: scaffold gap size wrong estimation (local) 3727840 3728713 2592 1719 CM091752.1 scf7180000184121 99.2 True indel: indel (<= 5bp) 3725458 3727617 4977 2818 CM091752.1 scf7180000184121 99.81 True indel: indel (<= 5bp) 3724511 3725169 5929 5271 CM091752.1 scf7180000184121 96.66 True local misassembly 3721398 3724005 8858 6251 CM091752.1 scf7180000184121 99.65 True indel: indel (<= 5bp) 3719081 3721107 11177 9151 CM091752.1 scf7180000184121 99.75 True indel: indel (<= 5bp) 3717882 3719079 12375 11178 CM091752.1 scf7180000184121 99.83 True indel: indel (> 5bp) 3717059 3717881 13205 12383 CM091752.1 scf7180000184121 99.88 True fake: scaffold gap size wrong estimation (local) 3706845 3716222 23058 13767 CM091752.1 scf7180000184121 98.13 True fake: scaffold gap size wrong estimation (local) 3692345 3706409 37089 23186 CM091752.1 scf7180000184121 96.63 True relocation, inconsistency = 2573790 1117626 1118536 37108 38018 CM091752.1 scf7180000184121 99.67 True indel: indel (<= 5bp) 1118538 1119636 38019 39117 CM091752.1 scf7180000184121 99.27 True local misassembly 1119937 1120447 39133 39643 CM091752.1 scf7180000184121 98.63 True fake: scaffold gap size wrong estimation (local) 1120619 1121483 39830 40694 CM091752.1 scf7180000184121 99.42 True indel: indel (<= 5bp) 1121484 1122559 40698 41773 CM091752.1 scf7180000184121 99.26 True local misassembly 1123457 1124478 42322 43343 CM091752.1 scf7180000184121 99.51 True local misassembly 1125558 1126419 44115 44976 CM091752.1 scf7180000184121 99.65 True local misassembly 1127814 1154518 46228 72620 CM091752.1 scf7180000184121 96.7 True fake: scaffold gap size wrong estimation (local) 1154755 1161968 72674 79809 CM091752.1 scf7180000184121 96.96 True local misassembly 1162084 1163143 80063 81122 CM091752.1 scf7180000184121 99.91 True local misassembly 1163398 1165059 81123 82784 CM091752.1 scf7180000184121 99.28 True indel: indel (> 5bp) 1165132 1165982 82866 83716 CM091752.1 scf7180000184121 99.29 True local misassembly 1166844 1168151 84079 85386 CM091752.1 scf7180000184121 99.08 True indel: indel (> 5bp) 1168302 1170938 85544 88180 CM091752.1 scf7180000184121 99.62 True fake: scaffold gap size wrong estimation (local) 1172350 1173132 89437 90219 CM091752.1 scf7180000184121 99.11 True indel: indel (<= 5bp) 1173134 1174388 90220 91474 CM091752.1 scf7180000184121 99.36 True fake: scaffold gap size wrong estimation (local) 1174487 1176623 91595 93739 CM091752.1 scf7180000184121 96.48 True fake: scaffold gap size wrong estimation (local) 1176712 1180121 93775 97364 CM091752.1 scf7180000184121 95.16 True fake: scaffold gap size wrong estimation (local) 1181122 1184134 97907 100910 CM091752.1 scf7180000184121 98.02 True local misassembly 1184641 1189787 100989 106120 CM091752.1 scf7180000184121 96.42 True relocation, scaffold gap is present, inconsistency = 22582 1212524 1214624 106275 108375 CM091752.1 scf7180000184121 99.24 True local misassembly 1215631 1216402 108913 109684 CM091752.1 scf7180000184121 98.58 True local misassembly 1216941 1217458 110211 110728 CM091752.1 scf7180000184121 99.03 True indel: indel (<= 5bp) 1217733 1219658 110999 112924 CM091752.1 scf7180000184121 99.58 True local misassembly 1221015 1222328 113210 114523 CM091752.1 scf7180000184121 98.86 True fake: scaffold gap size wrong estimation (local) 1223390 1226106 115751 118488 CM091752.1 scf7180000184121 98.32 True translocation 1487810 1493823 118679 124697 CM091754.1 scf7180000184121 99.14 True fake: scaffold gap size wrong estimation (local) 1493997 1501177 124890 132093 CM091754.1 scf7180000184121 98.85 True fake: scaffold gap size wrong estimation (local) 1501377 1503569 132253 134446 CM091754.1 scf7180000184121 99.45 True fake: scaffold gap size wrong estimation (local) 1503777 1508640 134599 139460 CM091754.1 scf7180000184121 96.97 True indel: indel (> 5bp) 1508712 1602524 139519 233402 CM091754.1 scf7180000184121 99.48 True CONTIG scf7180000184121 233402 misassembled 15024739 15031387 1 6698 CM091756.1 scf7180000184122 99.15 True translocation, scaffold gap is present 15956377 16021794 8865 74345 CM091751.1 scf7180000184122 99.74 True fake: scaffold gap size wrong estimation (local) 16022030 16029069 74521 81561 CM091751.1 scf7180000184122 99.6 True fake: scaffold gap size wrong estimation (local) 16029962 16087633 82643 140192 CM091751.1 scf7180000184122 99.48 True fake: scaffold gap size wrong estimation (local) 16088548 16163204 140668 215309 CM091751.1 scf7180000184122 99.63 True relocation, inconsistency = 30138 16201911 16212951 223878 234909 CM091751.1 scf7180000184122 99.67 True fake: scaffold gap size wrong estimation (local) 16213138 16226119 235039 247716 CM091751.1 scf7180000184122 97.75 True relocation, inconsistency = 17261 16243381 16279715 247717 284054 CM091751.1 scf7180000184122 99.96 True CONTIG scf7180000184122 284054 misassembled 2101030 2103688 2662 1 CM091754.1 scf7180000184123 99.32 True translocation 2703597 2704841 2783 4027 CM091768.1 scf7180000184123 99.76 True local misassembly 2707915 2715897 5826 13568 CM091768.1 scf7180000184123 95.0 True local misassembly 2716460 2719269 14013 16822 CM091768.1 scf7180000184123 99.15 True local misassembly 2719704 2721282 17123 18701 CM091768.1 scf7180000184123 99.49 True indel: indel (<= 5bp) 2721285 2722491 18702 19908 CM091768.1 scf7180000184123 99.5 True indel: indel (> 5bp) 2722498 2723269 19909 20680 CM091768.1 scf7180000184123 99.22 True indel: indel (<= 5bp) 2723270 2727415 20682 24827 CM091768.1 scf7180000184123 99.57 True indel: indel (<= 5bp) 2727417 2728210 24828 25621 CM091768.1 scf7180000184123 99.12 True indel: indel (<= 5bp) 2728225 2730251 25640 27666 CM091768.1 scf7180000184123 99.16 True indel: indel (<= 5bp) 2730255 2731485 27667 28897 CM091768.1 scf7180000184123 98.7 True fake: scaffold gap size wrong estimation (local) 2735918 2737149 32568 33799 CM091768.1 scf7180000184123 98.94 True indel: indel (> 5bp) 2737160 2737815 33800 34455 CM091768.1 scf7180000184123 99.39 True local misassembly 2739784 2740555 35298 36069 CM091768.1 scf7180000184123 98.19 True local misassembly 2742126 2742726 37212 37812 CM091768.1 scf7180000184123 99.5 True local misassembly 2743203 2743761 37813 38371 CM091768.1 scf7180000184123 99.11 True local misassembly 2747279 2750307 39666 42693 CM091768.1 scf7180000184123 96.71 True local misassembly 2750604 2751235 43226 43857 CM091768.1 scf7180000184123 98.42 True fake: scaffold gap size wrong estimation (local) 2751593 2752766 44074 45247 CM091768.1 scf7180000184123 98.98 True local misassembly 2752958 2753484 45248 45774 CM091768.1 scf7180000184123 99.05 True indel: indel (<= 5bp) 2753987 2754678 46273 46964 CM091768.1 scf7180000184123 99.71 True indel: indel (<= 5bp) 2754825 2755437 47107 47719 CM091768.1 scf7180000184123 99.02 True indel: indel (<= 5bp) 2755492 2756292 47775 48575 CM091768.1 scf7180000184123 99.38 True fake: scaffold gap size wrong estimation (local) 2757116 2761216 49745 53845 CM091768.1 scf7180000184123 99.0 True fake: scaffold gap size wrong estimation (local) 2763956 2765070 56505 57619 CM091768.1 scf7180000184123 99.37 True indel: indel (<= 5bp) 2765071 2765702 57621 58252 CM091768.1 scf7180000184123 99.84 True indel: indel (<= 5bp) 2765703 2766583 58254 59134 CM091768.1 scf7180000184123 99.32 True local misassembly 2768179 2769315 60053 61189 CM091768.1 scf7180000184123 99.12 True indel: indel (> 5bp) 2769340 2770628 61220 62508 CM091768.1 scf7180000184123 99.07 True indel: indel (<= 5bp) 2770629 2771538 62510 63419 CM091768.1 scf7180000184123 99.12 True indel: indel (<= 5bp) 2771539 2772148 63421 64030 CM091768.1 scf7180000184123 99.84 True local misassembly 2772773 2773777 64672 65676 CM091768.1 scf7180000184123 99.4 True fake: scaffold gap size wrong estimation (local) 2774988 2777652 66383 69094 CM091768.1 scf7180000184123 97.46 True indel: indel (> 5bp) 2777682 2779279 69134 70726 CM091768.1 scf7180000184123 98.87 True fake: scaffold gap size wrong estimation (local) 2780049 2781634 71002 72594 CM091768.1 scf7180000184123 99.0 True fake: scaffold gap size wrong estimation (local) 2782674 2783931 73468 74725 CM091768.1 scf7180000184123 99.6 True indel: indel (<= 5bp) 2784289 2784862 75081 75654 CM091768.1 scf7180000184123 99.3 True local misassembly 2785274 2786177 75833 76736 CM091768.1 scf7180000184123 97.01 True fake: scaffold gap size wrong estimation (local) 2787982 2789715 78548 80281 CM091768.1 scf7180000184123 99.42 True indel: indel (> 5bp) 2790212 2790842 80760 81390 CM091768.1 scf7180000184123 99.84 True indel: indel (<= 5bp) 2791075 2792295 81619 82839 CM091768.1 scf7180000184123 99.59 True local misassembly 2793409 2794305 83903 84799 CM091768.1 scf7180000184123 99.33 True local misassembly 2795119 2795683 85630 86194 CM091768.1 scf7180000184123 99.47 True indel: indel (<= 5bp) 2795895 2796647 86407 87159 CM091768.1 scf7180000184123 99.87 True fake: scaffold gap size wrong estimation (local) 2798418 2800045 87669 89296 CM091768.1 scf7180000184123 99.51 True indel: indel (<= 5bp) 2800046 2800572 89298 89824 CM091768.1 scf7180000184123 99.24 True CONTIG scf7180000184123 89824 misassembled 4145313 4145914 3120 2519 CM091768.1 scf7180000184124 100.0 True fake: scaffold gap size wrong estimation (local) 4144451 4145012 3795 3234 CM091768.1 scf7180000184124 99.82 True fake: scaffold gap size wrong estimation (local) 4133652 4144320 15092 4423 CM091768.1 scf7180000184124 99.98 True fake: scaffold gap size wrong estimation (local) 4131593 4132877 17027 15743 CM091768.1 scf7180000184124 100.0 True fake: scaffold gap size wrong estimation (local) 4123782 4127260 23968 20490 CM091768.1 scf7180000184124 99.89 True relocation, scaffold gap is present, inconsistency = 521688 3598240 3599540 26522 27822 CM091768.1 scf7180000184124 97.77 True fake: scaffold gap size wrong estimation (local) 3599818 3602208 28349 30750 CM091768.1 scf7180000184124 99.75 True fake: scaffold gap size wrong estimation (local) 3602343 3608325 30853 36834 CM091768.1 scf7180000184124 99.98 True fake: scaffold gap size wrong estimation (local) 3609217 3616706 37125 44761 CM091768.1 scf7180000184124 97.26 True CONTIG scf7180000184124 44792 misassembled 9127478 9128846 33 1401 CM091756.1 scf7180000184125 99.78 True local misassembly 9129211 9130281 1538 2608 CM091756.1 scf7180000184125 99.25 True local misassembly 9130448 9132881 2609 5042 CM091756.1 scf7180000184125 99.47 True indel: indel (<= 5bp) 9132882 9133526 5045 5689 CM091756.1 scf7180000184125 99.84 True local misassembly 9134219 9135876 6137 7794 CM091756.1 scf7180000184125 99.22 True indel: indel (> 5bp) 9136088 9137228 7998 9138 CM091756.1 scf7180000184125 99.74 True local misassembly 9138327 9139491 9601 10765 CM091756.1 scf7180000184125 98.88 True indel: indel (<= 5bp) 9139492 9140427 10767 11702 CM091756.1 scf7180000184125 98.93 True local misassembly 9141043 9141565 12321 12843 CM091756.1 scf7180000184125 98.85 True local misassembly 9142877 9143531 14113 14767 CM091756.1 scf7180000184125 99.08 True indel: indel (> 5bp) 9143995 9145816 15246 17067 CM091756.1 scf7180000184125 99.73 True fake: scaffold gap size wrong estimation (local) 9146644 9148934 17876 20158 CM091756.1 scf7180000184125 98.61 True fake: scaffold gap size wrong estimation (local) 9149364 9163465 20478 34566 CM091756.1 scf7180000184125 98.77 True fake: scaffold gap size wrong estimation (local) 9163576 9193795 34667 64724 CM091756.1 scf7180000184125 97.87 True indel: indel (> 5bp) 9193841 9237864 64746 108316 CM091756.1 scf7180000184125 97.75 True fake: scaffold gap size wrong estimation (local) 9237983 9271852 108416 142179 CM091756.1 scf7180000184125 98.98 True CONTIG scf7180000184125 142179 correct CONTIG scf7180000184126 77334 unaligned 5583450 5587166 1 3729 CM091768.1 scf7180000184127 99.59 True fake: scaffold gap size wrong estimation (local) 5587220 5609077 3962 25959 CM091768.1 scf7180000184127 99.43 True translocation 14198548 14203590 31005 25960 CM091759.1 scf7180000184127 99.59 True fake: scaffold gap size wrong estimation (local) 14087620 14198442 142424 31093 CM091759.1 scf7180000184127 99.24 True indel: indel (> 5bp) 14085515 14087394 144552 142673 CM091759.1 scf7180000184127 99.73 True indel: indel (<= 5bp) 14084718 14085514 145350 144554 CM091759.1 scf7180000184127 99.62 True fake: scaffold gap size wrong estimation (local) 14081682 14082871 148107 146918 CM091759.1 scf7180000184127 98.24 True local misassembly 14080338 14081272 149302 148368 CM091759.1 scf7180000184127 99.79 True fake: scaffold gap size wrong estimation (local) 14063463 14079625 166117 149947 CM091759.1 scf7180000184127 99.48 True fake: scaffold gap size wrong estimation (local) 14056052 14063266 173537 166392 CM091759.1 scf7180000184127 98.5 True fake: scaffold gap size wrong estimation (local) 14045105 14055894 184766 173942 CM091759.1 scf7180000184127 99.18 True indel: indel (> 5bp) 14023678 14045052 205988 184809 CM091759.1 scf7180000184127 98.42 True indel: indel (> 5bp) 14010577 14023650 218940 206037 CM091759.1 scf7180000184127 98.03 True fake: scaffold gap size wrong estimation (local) 13929764 14010376 299122 219115 CM091759.1 scf7180000184127 97.98 True indel: indel (> 5bp) 13924055 13929532 304825 299337 CM091759.1 scf7180000184127 99.36 True indel: indel (> 5bp) 13912413 13923901 316262 305009 CM091759.1 scf7180000184127 97.33 True fake: scaffold gap size wrong estimation (local) 13905432 13912172 323230 316483 CM091759.1 scf7180000184127 99.51 True fake: scaffold gap size wrong estimation (local) 13859767 13902940 367681 324562 CM091759.1 scf7180000184127 99.5 True fake: scaffold gap size wrong estimation (local) 13852477 13859527 374789 367875 CM091759.1 scf7180000184127 97.0 True fake: scaffold gap size wrong estimation (local) 13836379 13852441 390731 374826 CM091759.1 scf7180000184127 97.95 True fake: scaffold gap size wrong estimation (local) 13828372 13835372 398150 391197 CM091759.1 scf7180000184127 97.13 True fake: scaffold gap size wrong estimation (local) 13799636 13828240 426862 398282 CM091759.1 scf7180000184127 99.53 True fake: scaffold gap size wrong estimation (local) 13718891 13799492 507530 427012 CM091759.1 scf7180000184127 99.22 True CONTIG scf7180000184127 507530 misassembled 4549972 4581686 1 31735 CM091760.1 scf7180000184128 99.72 True fake: scaffold gap size wrong estimation (local) 4582487 4600341 32146 49934 CM091760.1 scf7180000184128 99.23 True fake: scaffold gap size wrong estimation (local) 4600816 4690713 50029 139652 CM091760.1 scf7180000184128 99.34 True fake: scaffold gap size wrong estimation (local) 4691545 4692127 140309 140891 CM091760.1 scf7180000184128 99.83 True indel: indel (<= 5bp) 4692128 4692880 140893 141645 CM091760.1 scf7180000184128 99.87 True fake: scaffold gap size wrong estimation (local) 4693421 4694521 142586 143686 CM091760.1 scf7180000184128 97.64 True indel: indel (<= 5bp) 4694523 4695567 143687 144731 CM091760.1 scf7180000184128 99.9 True indel: indel (> 5bp) 4695600 4698973 144732 148105 CM091760.1 scf7180000184128 99.97 True fake: scaffold gap size wrong estimation (local) 4699339 4728635 148424 177703 CM091760.1 scf7180000184128 99.78 True fake: scaffold gap size wrong estimation (local) 4729543 4749407 178276 198008 CM091760.1 scf7180000184128 98.76 True fake: scaffold gap size wrong estimation (local) 4749625 4753339 198208 201924 CM091760.1 scf7180000184128 99.49 True fake: scaffold gap size wrong estimation (local) 4753605 4781279 202157 229831 CM091760.1 scf7180000184128 99.5 True fake: scaffold gap size wrong estimation (local) 4781439 4807419 229974 255871 CM091760.1 scf7180000184128 99.25 True fake: scaffold gap size wrong estimation (local) 4807911 4844638 256157 292874 CM091760.1 scf7180000184128 99.24 True fake: scaffold gap size wrong estimation (local) 4846306 4856311 294228 304218 CM091760.1 scf7180000184128 99.23 True fake: scaffold gap size wrong estimation (local) 4856809 5119196 304415 566640 CM091760.1 scf7180000184128 99.14 True indel: indel (<= 5bp) 5119238 5169731 566687 617157 CM091760.1 scf7180000184128 99.11 True fake: scaffold gap size wrong estimation (local) 5169936 5238184 617264 685291 CM091760.1 scf7180000184128 98.95 True fake: scaffold gap size wrong estimation (local) 5238971 5240815 685838 687681 CM091760.1 scf7180000184128 99.08 True fake: scaffold gap size wrong estimation (local) 5241312 5241864 687799 688351 CM091760.1 scf7180000184128 99.82 True local misassembly 5243607 5245414 690088 691895 CM091760.1 scf7180000184128 99.89 True fake: scaffold gap size wrong estimation (local) 5245906 5246759 692353 693206 CM091760.1 scf7180000184128 98.83 True fake: scaffold gap size wrong estimation (local) 5247507 5248705 693656 694854 CM091760.1 scf7180000184128 98.92 True indel: indel (<= 5bp) 5248706 5249486 694856 695636 CM091760.1 scf7180000184128 99.36 True fake: scaffold gap size wrong estimation (local) 5250062 5251114 696213 697250 CM091760.1 scf7180000184128 97.9 True fake: scaffold gap size wrong estimation (local) 5252443 5262680 697682 707608 CM091760.1 scf7180000184128 95.06 True fake: scaffold gap size wrong estimation (local) 5262804 5374078 707715 819639 CM091760.1 scf7180000184128 98.76 True fake: scaffold gap size wrong estimation (local) 5374389 5410711 819877 856385 CM091760.1 scf7180000184128 98.95 True fake: scaffold gap size wrong estimation (local) 5411100 5450033 856645 895598 CM091760.1 scf7180000184128 98.92 True local misassembly 5450096 5453903 895757 899565 CM091760.1 scf7180000184128 99.5 True indel: indel (> 5bp) 5453950 5471024 899603 916675 CM091760.1 scf7180000184128 99.12 True indel: indel (> 5bp) 5471094 5531649 916726 977047 CM091760.1 scf7180000184128 98.77 True fake: scaffold gap size wrong estimation (local) 5531597 5751892 977749 1197999 CM091760.1 scf7180000184128 98.98 True fake: scaffold gap size wrong estimation (local) 5752117 5931058 1198187 1377491 CM091760.1 scf7180000184128 99.36 True fake: scaffold gap size wrong estimation (local) 5931170 6070391 1377589 1516811 CM091760.1 scf7180000184128 99.84 True fake: scaffold gap size wrong estimation (local) 6070671 6080026 1516958 1526308 CM091760.1 scf7180000184128 99.72 True fake: scaffold gap size wrong estimation (local) 6080116 6124764 1526388 1571119 CM091760.1 scf7180000184128 99.59 True CONTIG scf7180000184128 1571484 correct 442185 443318 187 1320 CM091753.1 scf7180000184129 100.0 True fake: scaffold gap size wrong estimation (local) 444392 451297 2122 9149 CM091753.1 scf7180000184129 98.78 True fake: scaffold gap size wrong estimation (local) 452836 473165 11114 31448 CM091753.1 scf7180000184129 99.94 True fake: scaffold gap size wrong estimation (local) 473315 500740 31531 58947 CM091753.1 scf7180000184129 99.91 True fake: scaffold gap size wrong estimation (local) 500905 511381 59040 69519 CM091753.1 scf7180000184129 99.93 True fake: scaffold gap size wrong estimation (local) 511854 578896 69645 135585 CM091753.1 scf7180000184129 97.94 True fake: scaffold gap size wrong estimation (local) 579099 600359 136425 157685 CM091753.1 scf7180000184129 99.95 True fake: scaffold gap size wrong estimation (local) 601892 602559 158415 159082 CM091753.1 scf7180000184129 100.0 True fake: scaffold gap size wrong estimation (local) 603220 604636 159604 161028 CM091753.1 scf7180000184129 100.0 True fake: scaffold gap size wrong estimation (local) 605710 630738 161302 186293 CM091753.1 scf7180000184129 99.78 True relocation, inconsistency = 14058 644797 651267 186294 192762 CM091753.1 scf7180000184129 99.96 True fake: scaffold gap size wrong estimation (local) 652004 656217 193165 197373 CM091753.1 scf7180000184129 99.81 True fake: scaffold gap size wrong estimation (local) 656428 707042 197519 248093 CM091753.1 scf7180000184129 99.87 True indel: indel (> 5bp) 707149 716429 248218 257498 CM091753.1 scf7180000184129 99.97 True fake: scaffold gap size wrong estimation (local) 716820 717687 257977 258844 CM091753.1 scf7180000184129 99.88 True CONTIG scf7180000184129 260689 misassembled 10209349 10211230 1882 1 CM091765.1 scf7180000184130 99.79 True unknown 10204927 10208211 5875 2591 CM091765.1 scf7180000184130 99.94 True unknown 10203203 10204560 7716 6359 CM091765.1 scf7180000184130 97.28 True unknown 10202256 10203202 8679 7733 CM091765.1 scf7180000184130 97.89 True unknown 10200309 10201073 9867 9103 CM091765.1 scf7180000184130 99.74 True unknown 10195752 10198829 14160 11082 CM091765.1 scf7180000184130 99.9 True unknown 10151229 10170077 58056 39207 CM091765.1 scf7180000184130 99.89 True unknown 10148685 10151111 60584 58167 CM091765.1 scf7180000184130 99.58 True unknown 10139855 10148574 69395 60707 CM091765.1 scf7180000184130 99.07 True unknown CONTIG scf7180000184130 94592 mis_unaligned 618452 621702 1 3264 CM091755.1 scf7180000184131 99.91 True fake: scaffold gap size wrong estimation (local) 622602 623364 4604 5366 CM091755.1 scf7180000184131 99.87 True fake: scaffold gap size wrong estimation (local) 624809 627538 6374 9103 CM091755.1 scf7180000184131 100.0 True fake: scaffold gap size wrong estimation (local) 628441 630942 9878 12278 CM091755.1 scf7180000184131 95.85 True fake: scaffold gap size wrong estimation (local) 634145 686883 14617 67565 CM091755.1 scf7180000184131 99.37 True fake: scaffold gap size wrong estimation (local) 687020 710419 67705 91287 CM091755.1 scf7180000184131 99.07 True fake: scaffold gap size wrong estimation (local) 710817 712112 91374 92669 CM091755.1 scf7180000184131 100.0 True indel: indel (> 5bp) 712150 741542 92716 121880 CM091755.1 scf7180000184131 99.15 True fake: scaffold gap size wrong estimation (local) 742018 743577 122154 123735 CM091755.1 scf7180000184131 99.16 True translocation 13808090 13850204 165913 123736 CM091758.1 scf7180000184131 98.96 True fake: scaffold gap size wrong estimation (local) 13786916 13807219 185907 166068 CM091758.1 scf7180000184131 97.2 True fake: scaffold gap size wrong estimation (local) 13781011 13786323 191355 186042 CM091758.1 scf7180000184131 99.89 True fake: scaffold gap size wrong estimation (local) 13780331 13780877 191996 191450 CM091758.1 scf7180000184131 99.82 True fake: scaffold gap size wrong estimation (local) 13778727 13780107 193407 192027 CM091758.1 scf7180000184131 99.42 True fake: scaffold gap size wrong estimation (local) 13776653 13778726 195497 193424 CM091758.1 scf7180000184131 99.81 True CONTIG scf7180000184131 196003 misassembled 60946 61451 1646 1141 CM091764.1 scf7180000184132 100.0 True fake: scaffold gap size wrong estimation (local) 58160 59214 4138 3084 CM091764.1 scf7180000184132 99.53 True relocation, inconsistency = 44607 12432 13491 4200 5259 CM091764.1 scf7180000184132 99.91 True fake: scaffold gap size wrong estimation (local) 15842 16462 7563 8183 CM091764.1 scf7180000184132 100.0 True fake: scaffold gap size wrong estimation (local) 17382 18627 9343 10587 CM091764.1 scf7180000184132 99.36 True CONTIG scf7180000184132 10587 misassembled 4155013 4158715 2144 5696 CM091768.1 scf7180000184133 95.1 True relocation, scaffold gap is present, inconsistency = 526342 3626467 3627063 7900 7304 CM091768.1 scf7180000184133 95.31 True local misassembly 3625486 3626225 8640 7901 CM091768.1 scf7180000184133 97.43 True indel: indel (<= 5bp) 3624962 3625485 9165 8642 CM091768.1 scf7180000184133 98.09 True indel: indel (<= 5bp) 3624216 3624961 9912 9167 CM091768.1 scf7180000184133 99.46 True fake: scaffold gap size wrong estimation (local) 3622096 3623306 12082 10872 CM091768.1 scf7180000184133 99.01 True translocation, scaffold gap is present 12194750 12195431 12131 12812 CM091756.1 scf7180000184133 100.0 True fake: scaffold gap size wrong estimation (local) 12197102 12197604 14570 15072 CM091756.1 scf7180000184133 98.61 True fake: scaffold gap size wrong estimation (local) 12198428 12202419 15441 19386 CM091756.1 scf7180000184133 97.65 True fake: scaffold gap size wrong estimation (local) 12204090 12213417 20467 29641 CM091756.1 scf7180000184133 95.88 True fake: not a misassembly (possible transposable element) 7766507 7767649 29683 30811 CM091765.1 scf7180000184133 98.6 True fake: not a misassembly (possible transposable element) 12213500 12216740 30832 34070 CM091756.1 scf7180000184133 99.67 True translocation 7763781 7798352 34071 68133 CM091765.1 scf7180000184133 97.62 True indel: indel (> 5bp) 7798450 7808868 68249 78664 CM091765.1 scf7180000184133 98.87 True fake: not a misassembly (possible transposable element) 15329181 15329828 79615 78971 CM091755.1 scf7180000184133 98.15 True fake: not a misassembly (possible transposable element) 7809329 7863861 79680 133999 CM091765.1 scf7180000184133 98.43 True CONTIG scf7180000184133 134817 misassembled 1382378 1384869 955 3446 CM091763.1 scf7180000184134 99.84 True fake: scaffold gap size wrong estimation (local) 1386540 1397597 4005 15059 CM091763.1 scf7180000184134 99.85 True fake: scaffold gap size wrong estimation (local) 1398087 1426901 15454 44272 CM091763.1 scf7180000184134 99.93 True fake: scaffold gap size wrong estimation (local) 1427057 1476795 44371 93834 CM091763.1 scf7180000184134 99.06 True fake: scaffold gap size wrong estimation (local) 1476913 1500541 93936 117191 CM091763.1 scf7180000184134 97.92 True fake: scaffold gap size wrong estimation (local) 1500699 1507469 117298 124070 CM091763.1 scf7180000184134 99.9 True fake: scaffold gap size wrong estimation (local) 1508389 1525845 124463 141926 CM091763.1 scf7180000184134 99.92 True fake: scaffold gap size wrong estimation (local) 1526968 1648592 142474 264108 CM091763.1 scf7180000184134 99.69 True indel: indel (> 5bp) 1648622 1711057 264181 326615 CM091763.1 scf7180000184134 99.8 True fake: not a misassembly (possible transposable element) 201868 202440 326616 327188 CM091760.1 scf7180000184134 99.85 True fake: not a misassembly (possible transposable element) 1711007 1712267 327231 328467 CM091763.1 scf7180000184134 97.62 True fake: scaffold gap size wrong estimation (local) 1712416 1744458 328544 360586 CM091763.1 scf7180000184134 99.27 True fake: scaffold gap size wrong estimation (local) 1744849 1784782 360863 400262 CM091763.1 scf7180000184134 98.19 True fake: scaffold gap size wrong estimation (local) 1784987 1800410 400512 415637 CM091763.1 scf7180000184134 97.33 True indel: indel (> 5bp) 1800581 1806568 415836 421843 CM091763.1 scf7180000184134 99.12 True fake: scaffold gap size wrong estimation (local) 1807501 1823165 422468 437581 CM091763.1 scf7180000184134 96.09 True indel: indel (> 5bp) 1823485 1823986 437911 438412 CM091763.1 scf7180000184134 99.6 True local misassembly 1824685 1825586 439101 440002 CM091763.1 scf7180000184134 99.67 True indel: indel (> 5bp) 1825655 1827263 440003 441611 CM091763.1 scf7180000184134 98.26 True indel: indel (<= 5bp) 1827265 1828708 441612 443055 CM091763.1 scf7180000184134 99.52 True local misassembly 1835164 1838326 443161 446323 CM091763.1 scf7180000184134 99.84 True indel: indel (<= 5bp) 1838385 1840228 446384 448227 CM091763.1 scf7180000184134 99.95 True fake: scaffold gap size wrong estimation (local) 1842409 1844141 449611 451343 CM091763.1 scf7180000184134 100.0 True indel: stretch of mismatches 1844575 1845499 451777 452701 CM091763.1 scf7180000184134 100.0 True indel: indel (<= 5bp) 1845650 1846364 452854 453568 CM091763.1 scf7180000184134 100.0 True indel: indel (<= 5bp) 1846547 1847156 453750 454359 CM091763.1 scf7180000184134 99.67 True indel: indel (<= 5bp) 1847553 1851505 454757 458709 CM091763.1 scf7180000184134 99.6 True indel: indel (<= 5bp) 1851583 1852765 458783 459965 CM091763.1 scf7180000184134 97.13 True indel: indel (> 5bp) 1852779 1855064 459966 462251 CM091763.1 scf7180000184134 100.0 True local misassembly 1855687 1856994 462871 464178 CM091763.1 scf7180000184134 99.77 True fake: scaffold gap size wrong estimation (local) 1857668 1859487 464864 466686 CM091763.1 scf7180000184134 99.61 True CONTIG scf7180000184134 466698 correct 7906452 7907324 873 1 CM091753.1 scf7180000184135 99.77 True relocation, scaffold gap is present, inconsistency = -4875323 12779426 12781754 3246 894 CM091753.1 scf7180000184135 98.46 True fake: scaffold gap size wrong estimation (local) 12544685 12774604 236751 6784 CM091753.1 scf7180000184135 98.35 True fake: scaffold gap size wrong estimation (local) 12466963 12541133 311386 237343 CM091753.1 scf7180000184135 99.36 True fake: scaffold gap size wrong estimation (local) 12439245 12466336 338992 311826 CM091753.1 scf7180000184135 99.24 True indel: indel (> 5bp) 12406333 12439186 371779 339045 CM091753.1 scf7180000184135 99.1 True fake: scaffold gap size wrong estimation (local) 12384481 12406107 393580 371961 CM091753.1 scf7180000184135 99.54 True indel: indel (> 5bp) 12166429 12384366 611526 393711 CM091753.1 scf7180000184135 99.17 True fake: scaffold gap size wrong estimation (local) 12103140 12166302 674705 611611 CM091753.1 scf7180000184135 99.2 True fake: scaffold gap size wrong estimation (local) 11964427 12102856 813103 674914 CM091753.1 scf7180000184135 98.98 True fake: scaffold gap size wrong estimation (local) 11958413 11964311 819095 813203 CM091753.1 scf7180000184135 99.47 True fake: scaffold gap size wrong estimation (local) 11877042 11958159 900413 819288 CM091753.1 scf7180000184135 99.55 True CONTIG scf7180000184135 900421 misassembled 2636364 2641781 1 5410 CM091754.1 scf7180000184136 99.17 True fake: scaffold gap size wrong estimation (local) 2642039 2644060 5635 7653 CM091754.1 scf7180000184136 98.23 True fake: scaffold gap size wrong estimation (local) 2645095 2645602 8254 8761 CM091754.1 scf7180000184136 95.87 True local misassembly 2646333 2647176 9501 10344 CM091754.1 scf7180000184136 99.64 True fake: scaffold gap size wrong estimation (local) 2647467 2648271 10648 11452 CM091754.1 scf7180000184136 99.88 True local misassembly 2649061 2649988 12094 13021 CM091754.1 scf7180000184136 99.35 True indel: indel (<= 5bp) 2649989 2651677 13023 14711 CM091754.1 scf7180000184136 99.23 True fake: scaffold gap size wrong estimation (local) 2651678 2653699 14736 16757 CM091754.1 scf7180000184136 99.51 True indel: indel (<= 5bp) 2654060 2654805 17120 17865 CM091754.1 scf7180000184136 99.2 True indel: indel (> 5bp) 2654815 2655732 17866 18783 CM091754.1 scf7180000184136 99.24 True local misassembly 2657257 2658068 19264 20075 CM091754.1 scf7180000184136 99.51 True indel: indel (<= 5bp) 2658070 2658605 20076 20611 CM091754.1 scf7180000184136 99.63 True fake: scaffold gap size wrong estimation (local) 2660606 2661324 22404 23124 CM091754.1 scf7180000184136 99.17 True fake: scaffold gap size wrong estimation (local) 2662026 2669010 23755 30729 CM091754.1 scf7180000184136 98.88 True fake: scaffold gap size wrong estimation (local) 2669300 2669809 31056 31565 CM091754.1 scf7180000184136 99.41 True fake: scaffold gap size wrong estimation (local) 2670083 2671333 31763 33006 CM091754.1 scf7180000184136 98.28 True fake: scaffold gap size wrong estimation (local) 2674043 2676624 34438 37020 CM091754.1 scf7180000184136 99.03 True fake: scaffold gap size wrong estimation (local) 2678444 2679656 38626 39838 CM091754.1 scf7180000184136 97.2 True fake: scaffold gap size wrong estimation (local) 2680886 2682566 40911 42591 CM091754.1 scf7180000184136 99.17 True fake: scaffold gap size wrong estimation (local) 2682950 2683521 43025 43596 CM091754.1 scf7180000184136 99.83 True fake: scaffold gap size wrong estimation (local) 2684368 2685642 44175 45449 CM091754.1 scf7180000184136 99.37 True local misassembly 2685997 2687395 45450 46848 CM091754.1 scf7180000184136 99.36 True fake: scaffold gap size wrong estimation (local) 2688225 2689833 47592 49200 CM091754.1 scf7180000184136 99.38 True indel: indel (<= 5bp) 2689834 2690737 49202 50105 CM091754.1 scf7180000184136 99.34 True local misassembly 2692240 2692775 51277 51812 CM091754.1 scf7180000184136 99.44 True local misassembly 2694231 2694825 53276 53870 CM091754.1 scf7180000184136 99.5 True fake: scaffold gap size wrong estimation (local) 2696508 2697373 55092 55957 CM091754.1 scf7180000184136 98.85 True fake: scaffold gap size wrong estimation (local) 2698652 2699896 57371 58577 CM091754.1 scf7180000184136 96.31 True indel: indel (> 5bp) 2699908 2700634 58598 59317 CM091754.1 scf7180000184136 98.21 True fake: scaffold gap size wrong estimation (local) 2700840 2702559 59533 61251 CM091754.1 scf7180000184136 98.09 True fake: scaffold gap size wrong estimation (local) 2703546 2704066 61811 62331 CM091754.1 scf7180000184136 99.04 True local misassembly 2705275 2705785 63548 64058 CM091754.1 scf7180000184136 99.8 True fake: scaffold gap size wrong estimation (local) 2706165 2707100 64769 65704 CM091754.1 scf7180000184136 99.36 True fake: scaffold gap size wrong estimation (local) 2707424 2708063 66048 66687 CM091754.1 scf7180000184136 97.19 True local misassembly 2709293 2710052 67087 67846 CM091754.1 scf7180000184136 99.74 True fake: scaffold gap size wrong estimation (local) 2710872 2711428 68700 69256 CM091754.1 scf7180000184136 98.92 True indel: indel (<= 5bp) 2711795 2712717 69620 70542 CM091754.1 scf7180000184136 99.67 True indel: indel (<= 5bp) 2712952 2713763 70774 71585 CM091754.1 scf7180000184136 98.77 True local misassembly 2714481 2716013 71797 73329 CM091754.1 scf7180000184136 99.54 True local misassembly 2716914 2718540 73400 75026 CM091754.1 scf7180000184136 99.14 True indel: indel (<= 5bp) 2718541 2719102 75028 75589 CM091754.1 scf7180000184136 99.29 True local misassembly 2720149 2720668 76639 77158 CM091754.1 scf7180000184136 98.65 True indel: indel (<= 5bp) 2720915 2721681 77407 78173 CM091754.1 scf7180000184136 99.87 True local misassembly 2722626 2723294 79123 79791 CM091754.1 scf7180000184136 100.0 True fake: scaffold gap size wrong estimation (local) 2725390 2727253 81734 83597 CM091754.1 scf7180000184136 98.7 True local misassembly 2727776 2728958 83832 85014 CM091754.1 scf7180000184136 99.09 True relocation, inconsistency = -659998 2068961 2091141 85015 107631 CM091754.1 scf7180000184136 98.13 True fake: scaffold gap size wrong estimation (local) 2093824 2133672 108967 147490 CM091754.1 scf7180000184136 96.58 True translocation 20726234 20728140 147491 149397 CM091751.1 scf7180000184136 100.0 True CONTIG scf7180000184136 150046 misassembled 3421226 3422241 31 1046 CM091754.1 scf7180000184137 98.72 True indel: indel (> 5bp) 3422242 3423323 1053 2134 CM091754.1 scf7180000184137 99.26 True fake: scaffold gap size wrong estimation (local) 3424178 3424693 3209 3724 CM091754.1 scf7180000184137 99.42 True fake: scaffold gap size wrong estimation (local) 3425852 3426427 4732 5311 CM091754.1 scf7180000184137 98.62 True indel: indel (> 5bp) 3426848 3436383 5742 15413 CM091754.1 scf7180000184137 97.94 True fake: scaffold gap size wrong estimation (local) 3436710 3437681 15661 16632 CM091754.1 scf7180000184137 99.49 True fake: scaffold gap size wrong estimation (local) 3437912 3456572 16726 35341 CM091754.1 scf7180000184137 98.98 True fake: scaffold gap size wrong estimation (local) 3456981 3463347 35855 42229 CM091754.1 scf7180000184137 99.34 True fake: scaffold gap size wrong estimation (local) 3464456 3465646 43012 44202 CM091754.1 scf7180000184137 99.66 True fake: scaffold gap size wrong estimation (local) 3467318 3467964 45433 46079 CM091754.1 scf7180000184137 99.85 True indel: indel (<= 5bp) 3467966 3469723 46080 47837 CM091754.1 scf7180000184137 99.66 True indel: indel (> 5bp) 3469738 3472383 47838 50483 CM091754.1 scf7180000184137 99.62 True local misassembly 3472612 3473299 50530 51217 CM091754.1 scf7180000184137 100.0 True indel: indel (<= 5bp) 3473300 3473843 51219 51762 CM091754.1 scf7180000184137 99.26 True indel: indel (<= 5bp) 3474077 3474861 51998 52782 CM091754.1 scf7180000184137 100.0 True indel: indel (<= 5bp) 3474862 3475563 52784 53485 CM091754.1 scf7180000184137 100.0 True fake: scaffold gap size wrong estimation (local) 3475756 3494978 53623 72237 CM091754.1 scf7180000184137 95.97 True fake: scaffold gap size wrong estimation (local) 3495039 3495543 72718 73223 CM091754.1 scf7180000184137 98.42 True fake: scaffold gap size wrong estimation (local) 3495987 3497895 73306 75206 CM091754.1 scf7180000184137 99.11 True fake: scaffold gap size wrong estimation (local) 3499662 3502307 76283 78928 CM091754.1 scf7180000184137 99.51 True indel: indel (<= 5bp) 3502796 3503425 79415 80044 CM091754.1 scf7180000184137 99.84 True indel: indel (<= 5bp) 3503510 3504029 80130 80649 CM091754.1 scf7180000184137 99.81 True indel: indel (<= 5bp) 3504030 3504749 80652 81371 CM091754.1 scf7180000184137 99.58 True fake: scaffold gap size wrong estimation (local) 3505690 3507463 82797 84570 CM091754.1 scf7180000184137 99.61 True local misassembly 3508220 3509567 85122 86469 CM091754.1 scf7180000184137 99.41 True indel: indel (> 5bp) 3509875 3510796 86765 87686 CM091754.1 scf7180000184137 98.16 True indel: indel (<= 5bp) 3510798 3511643 87687 88532 CM091754.1 scf7180000184137 99.76 True fake: scaffold gap size wrong estimation (local) 3511742 3512919 88814 89991 CM091754.1 scf7180000184137 98.64 True indel: indel (> 5bp) 3513017 3513582 90077 90642 CM091754.1 scf7180000184137 98.76 True fake: scaffold gap size wrong estimation (local) 3515593 3523446 91679 99566 CM091754.1 scf7180000184137 98.81 True fake: scaffold gap size wrong estimation (local) 3523770 3534702 99701 110646 CM091754.1 scf7180000184137 98.88 True fake: scaffold gap size wrong estimation (local) 3537472 3538491 112926 113945 CM091754.1 scf7180000184137 99.61 True indel: indel (<= 5bp) 3538492 3539023 113947 114478 CM091754.1 scf7180000184137 99.06 True CONTIG scf7180000184137 114935 correct 7599008 7604883 5924 1 CM091755.1 scf7180000184138 98.8 True indel: indel (> 5bp) 7583205 7598917 21737 6004 CM091755.1 scf7180000184138 99.5 True fake: scaffold gap size wrong estimation (local) 7538365 7583083 66440 21850 CM091755.1 scf7180000184138 98.91 True fake: scaffold gap size wrong estimation (local) 7533579 7537927 70917 66565 CM091755.1 scf7180000184138 99.17 True indel: indel (> 5bp) 7510470 7533530 94047 70975 CM091755.1 scf7180000184138 99.08 True indel: indel (<= 5bp) 7507991 7510428 96525 94092 CM091755.1 scf7180000184138 99.34 True fake: scaffold gap size wrong estimation (local) 7496252 7507331 107871 96818 CM091755.1 scf7180000184138 98.69 True fake: scaffold gap size wrong estimation (local) 7445996 7495707 158020 108179 CM091755.1 scf7180000184138 98.99 True fake: scaffold gap size wrong estimation (local) 7445007 7445751 158936 158192 CM091755.1 scf7180000184138 99.73 True indel: indel (> 5bp) 7442382 7444978 161582 158974 CM091755.1 scf7180000184138 98.81 True fake: scaffold gap size wrong estimation (local) 7321304 7442017 282731 161887 CM091755.1 scf7180000184138 98.0 True fake: scaffold gap size wrong estimation (local) 7318465 7321182 285556 282824 CM091755.1 scf7180000184138 99.16 True fake: scaffold gap size wrong estimation (local) 7160968 7318298 443126 285697 CM091755.1 scf7180000184138 99.2 True indel: indel (> 5bp) 7116293 7160836 487855 443267 CM091755.1 scf7180000184138 99.27 True indel: indel (<= 5bp) 7039592 7116252 565835 487899 CM091755.1 scf7180000184138 97.73 True indel: indel (> 5bp) 6873347 7039417 731431 566019 CM091755.1 scf7180000184138 97.59 True fake: scaffold gap size wrong estimation (local) 6869787 6873185 734980 731580 CM091755.1 scf7180000184138 99.79 True fake: scaffold gap size wrong estimation (local) 6852110 6869545 752823 735139 CM091755.1 scf7180000184138 98.04 True fake: scaffold gap size wrong estimation (local) 6831143 6851240 772953 753336 CM091755.1 scf7180000184138 96.74 True fake: scaffold gap size wrong estimation (local) 6823583 6831002 780486 773054 CM091755.1 scf7180000184138 99.42 True fake: scaffold gap size wrong estimation (local) 6694226 6822811 909182 780659 CM091755.1 scf7180000184138 99.38 True local misassembly 6688953 6689866 910095 909183 CM091755.1 scf7180000184138 99.51 True local misassembly 6690812 6694251 913555 910116 CM091755.1 scf7180000184138 99.88 True fake: scaffold gap size wrong estimation (local) 6682006 6687006 918574 913576 CM091755.1 scf7180000184138 99.08 True fake: scaffold gap size wrong estimation (local) 6674129 6681103 925537 918595 CM091755.1 scf7180000184138 98.33 True fake: scaffold gap size wrong estimation (local) 6665879 6669355 928999 925558 CM091755.1 scf7180000184138 97.06 True fake: scaffold gap size wrong estimation (local) 6662350 6664062 931034 929320 CM091755.1 scf7180000184138 99.53 True fake: scaffold gap size wrong estimation (local) 6633674 6659743 957174 931083 CM091755.1 scf7180000184138 99.64 True fake: not a misassembly (possible transposable element) 6659738 6662429 959899 957198 CM091755.1 scf7180000184138 99.44 True fake: not a misassembly (possible transposable element) 6584539 6633404 1009007 959947 CM091755.1 scf7180000184138 98.94 True fake: scaffold gap size wrong estimation (local) 6573642 6584327 1019806 1009118 CM091755.1 scf7180000184138 99.14 True indel: indel (> 5bp) 6518681 6573609 1074741 1019833 CM091755.1 scf7180000184138 99.34 True indel: indel (> 5bp) 6502685 6518575 1090794 1074890 CM091755.1 scf7180000184138 99.44 True fake: scaffold gap size wrong estimation (local) 6489496 6502517 1104312 1091261 CM091755.1 scf7180000184138 99.35 True fake: scaffold gap size wrong estimation (local) 6477645 6489311 1115812 1104449 CM091755.1 scf7180000184138 96.07 True indel: indel (<= 5bp) 6476882 6477632 1116576 1115826 CM091755.1 scf7180000184138 99.73 True fake: scaffold gap size wrong estimation (local) 6409163 6476679 1184123 1116692 CM091755.1 scf7180000184138 99.31 True CONTIG scf7180000184138 1184669 correct CONTIG scf7180000184139 241176 unaligned 3668541 3669869 1 1329 CM091764.1 scf7180000184140 99.7 True indel: indel (<= 5bp) 3669871 3671160 1330 2619 CM091764.1 scf7180000184140 99.77 True indel: indel (<= 5bp) 3671161 3674149 2621 5609 CM091764.1 scf7180000184140 99.97 True indel: indel (<= 5bp) 3674150 3675802 5611 7263 CM091764.1 scf7180000184140 99.76 True local misassembly 3679495 3682270 7264 10039 CM091764.1 scf7180000184140 99.75 True indel: indel (<= 5bp) 3682585 3683348 10356 11119 CM091764.1 scf7180000184140 99.87 True fake: scaffold gap size wrong estimation (local) 3684610 3719543 12030 46845 CM091764.1 scf7180000184140 99.29 True indel: indel (> 5bp) 3719590 3758755 46919 86109 CM091764.1 scf7180000184140 99.7 True local misassembly 3759550 3771253 86932 98484 CM091764.1 scf7180000184140 98.47 True fake: scaffold gap size wrong estimation (local) 3772686 3773309 99239 99880 CM091764.1 scf7180000184140 99.68 True fake: scaffold gap size wrong estimation (local) 3774001 3795572 100620 122188 CM091764.1 scf7180000184140 99.64 True fake: scaffold gap size wrong estimation (local) 3796637 3884143 122644 210080 CM091764.1 scf7180000184140 99.43 True fake: scaffold gap size wrong estimation (local) 3884365 3900190 210264 226038 CM091764.1 scf7180000184140 98.99 True fake: scaffold gap size wrong estimation (local) 3901416 3902178 226857 227601 CM091764.1 scf7180000184140 97.25 True fake: scaffold gap size wrong estimation (local) 3903708 3905122 228220 229635 CM091764.1 scf7180000184140 99.58 True fake: scaffold gap size wrong estimation (local) 3905715 3924781 230129 249185 CM091764.1 scf7180000184140 99.28 True fake: scaffold gap size wrong estimation (local) 3925139 3944579 249510 268372 CM091764.1 scf7180000184140 96.42 True fake: scaffold gap size wrong estimation (local) 3946352 3954671 268610 276933 CM091764.1 scf7180000184140 99.72 True fake: scaffold gap size wrong estimation (local) 3955626 3956755 277221 278378 CM091764.1 scf7180000184140 98.15 True fake: scaffold gap size wrong estimation (local) 3957940 3971739 279076 292845 CM091764.1 scf7180000184140 99.38 True fake: scaffold gap size wrong estimation (local) 3972695 3974188 293572 295073 CM091764.1 scf7180000184140 98.34 True CONTIG scf7180000184140 295073 correct 5297498 5330718 1243 34027 CM091765.1 scf7180000184141 97.4 True fake: scaffold gap size wrong estimation (local) 5331667 5341727 34714 44726 CM091765.1 scf7180000184141 98.5 True local misassembly 5341994 5342781 44797 45584 CM091765.1 scf7180000184141 99.11 True fake: scaffold gap size wrong estimation (local) 5343176 5346883 45998 49714 CM091765.1 scf7180000184141 99.25 True local misassembly 5347468 5373092 49928 75011 CM091765.1 scf7180000184141 97.09 True fake: scaffold gap size wrong estimation (local) 5373617 5399623 75347 101424 CM091765.1 scf7180000184141 99.23 True indel: indel (> 5bp) 5399714 5407132 101522 108941 CM091765.1 scf7180000184141 99.42 True fake: scaffold gap size wrong estimation (local) 5408000 5408560 109649 110209 CM091765.1 scf7180000184141 99.82 True fake: scaffold gap size wrong estimation (local) 5409201 5442287 110510 143544 CM091765.1 scf7180000184141 98.99 True fake: scaffold gap size wrong estimation (local) 5442540 5486872 143743 187975 CM091765.1 scf7180000184141 99.07 True fake: scaffold gap size wrong estimation (local) 5487337 5518639 188427 219508 CM091765.1 scf7180000184141 98.63 True fake: scaffold gap size wrong estimation (local) 5518730 5586178 219597 287033 CM091765.1 scf7180000184141 99.46 True CONTIG scf7180000184141 287033 correct 927013 989570 62310 1 CM091753.1 scf7180000184142 98.91 True fake: scaffold gap size wrong estimation (local) 914445 926164 74693 62949 CM091753.1 scf7180000184142 99.88 True fake: scaffold gap size wrong estimation (local) 911658 913920 77148 74886 CM091753.1 scf7180000184142 100.0 True fake: scaffold gap size wrong estimation (local) 910457 911141 78147 77448 CM091753.1 scf7180000184142 100.0 True fake: scaffold gap size wrong estimation (local) 898759 909726 89991 79016 CM091753.1 scf7180000184142 99.86 True fake: scaffold gap size wrong estimation (local) 858132 897017 129397 90662 CM091753.1 scf7180000184142 99.47 True fake: scaffold gap size wrong estimation (local) 857078 857746 130514 129846 CM091753.1 scf7180000184142 98.17 True translocation 98934 99778 130515 131359 CM091760.1 scf7180000184142 100.0 True local misassembly 104083 112754 131360 140040 CM091760.1 scf7180000184142 99.05 True fake: scaffold gap size wrong estimation (local) 112950 142725 140153 169736 CM091760.1 scf7180000184142 99.32 True fake: not a misassembly (possible transposable element) 15902867 15904901 169737 171771 CM091758.1 scf7180000184142 99.71 True fake: not a misassembly (possible transposable element) 142855 148954 171792 177872 CM091760.1 scf7180000184142 99.5 True fake: scaffold gap size wrong estimation (local) 150265 153272 179299 182346 CM091760.1 scf7180000184142 99.21 True fake: scaffold gap size wrong estimation (local) 154027 172943 182837 201166 CM091760.1 scf7180000184142 96.7 True fake: scaffold gap size wrong estimation (local) 175537 176613 202786 203862 CM091760.1 scf7180000184142 100.0 True fake: scaffold gap size wrong estimation (local) 177553 178646 204396 205481 CM091760.1 scf7180000184142 97.32 True fake: scaffold gap size wrong estimation (local) 179136 195857 206131 222669 CM091760.1 scf7180000184142 98.67 True fake: scaffold gap size wrong estimation (local) 196007 198776 222792 225561 CM091760.1 scf7180000184142 100.0 True CONTIG scf7180000184142 226518 misassembled 10661570 10933667 251 271728 CM091760.1 scf7180000184143 99.05 True indel: indel (> 5bp) 10933693 11225298 271776 563432 CM091760.1 scf7180000184143 99.35 True fake: scaffold gap size wrong estimation (local) 11225686 11252473 563546 590341 CM091760.1 scf7180000184143 99.66 True fake: scaffold gap size wrong estimation (local) 11253695 11257365 590989 594651 CM091760.1 scf7180000184143 99.15 True fake: scaffold gap size wrong estimation (local) 11257683 11288861 594804 625782 CM091760.1 scf7180000184143 98.94 True fake: scaffold gap size wrong estimation (local) 11289068 11308724 625950 645613 CM091760.1 scf7180000184143 99.12 True indel: indel (<= 5bp) 11308810 11379616 645701 717292 CM091760.1 scf7180000184143 98.32 True fake: scaffold gap size wrong estimation (local) 11380240 11408041 717489 745306 CM091760.1 scf7180000184143 99.46 True fake: scaffold gap size wrong estimation (local) 11408832 11455915 745867 793017 CM091760.1 scf7180000184143 99.45 True fake: scaffold gap size wrong estimation (local) 11455983 11511515 793131 848306 CM091760.1 scf7180000184143 98.92 True fake: scaffold gap size wrong estimation (local) 11511628 11692122 848400 1028970 CM091760.1 scf7180000184143 99.47 True indel: indel (> 5bp) 11692292 11798524 1029126 1135503 CM091760.1 scf7180000184143 99.6 True fake: scaffold gap size wrong estimation (local) 11798643 12103425 1135649 1440566 CM091760.1 scf7180000184143 99.47 True fake: scaffold gap size wrong estimation (local) 12103623 12138364 1440792 1475282 CM091760.1 scf7180000184143 97.5 True fake: scaffold gap size wrong estimation (local) 12138569 12166294 1475477 1502486 CM091760.1 scf7180000184143 97.05 True fake: scaffold gap size wrong estimation (local) 12166421 12171750 1502605 1507768 CM091760.1 scf7180000184143 96.08 True indel: indel (> 5bp) 12171863 12195395 1507849 1531385 CM091760.1 scf7180000184143 99.59 True fake: scaffold gap size wrong estimation (local) 12195920 12336915 1531777 1671917 CM091760.1 scf7180000184143 98.67 True fake: scaffold gap size wrong estimation (local) 12337573 12341657 1672317 1676397 CM091760.1 scf7180000184143 98.97 True fake: scaffold gap size wrong estimation (local) 12341830 12342770 1676539 1677479 CM091760.1 scf7180000184143 99.79 True indel: indel (> 5bp) 12342810 12344509 1677480 1679179 CM091760.1 scf7180000184143 97.35 True local misassembly 12344988 12346847 1679370 1681229 CM091760.1 scf7180000184143 99.52 True indel: indel (<= 5bp) 12346848 12348358 1681231 1682741 CM091760.1 scf7180000184143 99.54 True local misassembly 12349051 12483941 1683390 1818093 CM091760.1 scf7180000184143 99.14 True fake: scaffold gap size wrong estimation (local) 12484207 12495899 1818230 1829934 CM091760.1 scf7180000184143 99.61 True fake: scaffold gap size wrong estimation (local) 12496551 12568022 1830797 1902435 CM091760.1 scf7180000184143 99.2 True indel: indel (> 5bp) 12568090 12696527 1902510 2029985 CM091760.1 scf7180000184143 98.34 True fake: scaffold gap size wrong estimation (local) 12697458 12742960 2030425 2076020 CM091760.1 scf7180000184143 99.1 True indel: indel (> 5bp) 12743010 12762129 2076079 2094959 CM091760.1 scf7180000184143 98.06 True CONTIG scf7180000184143 2094982 correct 964830 965846 1577 561 CM091764.1 scf7180000184144 99.21 True fake: scaffold gap size wrong estimation (local) 963896 964829 2523 1590 CM091764.1 scf7180000184144 97.86 True local misassembly 962957 963685 3252 2524 CM091764.1 scf7180000184144 99.73 True indel: indel (<= 5bp) 961468 962955 4740 3253 CM091764.1 scf7180000184144 99.93 True indel: indel (<= 5bp) 960824 961466 5383 4741 CM091764.1 scf7180000184144 100.0 True fake: scaffold gap size wrong estimation (local) 959406 959977 6483 5912 CM091764.1 scf7180000184144 99.83 True fake: scaffold gap size wrong estimation (local) 956680 958322 9183 7559 CM091764.1 scf7180000184144 98.48 True fake: scaffold gap size wrong estimation (local) 950346 955952 15279 9673 CM091764.1 scf7180000184144 99.93 True fake: scaffold gap size wrong estimation (local) 947105 950213 18481 15373 CM091764.1 scf7180000184144 99.16 True local misassembly 946101 946899 19280 18482 CM091764.1 scf7180000184144 100.0 True fake: scaffold gap size wrong estimation (local) 944093 945201 20961 19887 CM091764.1 scf7180000184144 96.79 True fake: scaffold gap size wrong estimation (local) 940617 943590 24452 21487 CM091764.1 scf7180000184144 98.91 True fake: scaffold gap size wrong estimation (local) 937797 939765 26982 25013 CM091764.1 scf7180000184144 99.95 True translocation, scaffold gap is present 4181899 4182970 28720 27647 CM091762.1 scf7180000184144 97.58 True fake: scaffold gap size wrong estimation (local) 4179638 4180819 30629 29439 CM091762.1 scf7180000184144 99.49 True fake: scaffold gap size wrong estimation (local) 4058789 4179375 151075 30969 CM091762.1 scf7180000184144 98.84 True fake: scaffold gap size wrong estimation (local) 3989394 4055713 217812 151982 CM091762.1 scf7180000184144 98.36 True fake: scaffold gap size wrong estimation (local) 3966074 3988855 240843 217969 CM091762.1 scf7180000184144 98.48 True fake: not a misassembly (possible transposable element) 10809311 10810285 241818 240844 CM091756.1 scf7180000184144 99.7 True fake: not a misassembly (possible transposable element) 3945632 3966411 262577 241858 CM091762.1 scf7180000184144 98.73 True fake: scaffold gap size wrong estimation (local) 3906395 3945083 301466 262943 CM091762.1 scf7180000184144 98.5 True translocation 15482457 15484674 303684 301467 CM091754.1 scf7180000184144 99.75 True fake: scaffold gap size wrong estimation (local) 15394046 15482018 392028 303969 CM091754.1 scf7180000184144 99.78 True translocation 4418476 4420420 392029 393971 CM091759.1 scf7180000184144 99.9 True CONTIG scf7180000184144 393971 misassembled 10308451 10327033 19380 827 CM091765.1 scf7180000184145 99.74 True local misassembly 10300972 10305155 23567 19381 CM091765.1 scf7180000184145 99.65 True fake: scaffold gap size wrong estimation (local) 10296557 10300768 28028 23709 CM091765.1 scf7180000184145 97.12 True fake: scaffold gap size wrong estimation (local) 10293867 10295663 32216 30421 CM091765.1 scf7180000184145 99.39 True indel: indel (> 5bp) 10292225 10293742 33863 32334 CM091765.1 scf7180000184145 99.54 True fake: scaffold gap size wrong estimation (local) 10282187 10284776 37118 34488 CM091765.1 scf7180000184145 99.11 True fake: scaffold gap size wrong estimation (local) 10280903 10281974 38276 37205 CM091765.1 scf7180000184145 99.81 True fake: scaffold gap size wrong estimation (local) 10263961 10280172 55045 38771 CM091765.1 scf7180000184145 99.53 True inversion, scaffold gap is present 10248131 10259969 55953 67803 CM091765.1 scf7180000184145 99.8 True inversion, scaffold gap is present 10243812 10244605 74355 73563 CM091765.1 scf7180000184145 99.62 True fake: scaffold gap size wrong estimation (local) 10237635 10239824 77395 75206 CM091765.1 scf7180000184145 99.73 True fake: scaffold gap size wrong estimation (local) 10235661 10237634 79737 77764 CM091765.1 scf7180000184145 99.8 True CONTIG scf7180000184145 79821 misassembled 4121448 4122566 1119 1 CM091768.1 scf7180000184146 100.0 True fake: scaffold gap size wrong estimation (local) 4113756 4120560 8956 2150 CM091768.1 scf7180000184146 99.97 True fake: scaffold gap size wrong estimation (local) 4106435 4113395 16049 9072 CM091768.1 scf7180000184146 99.94 True translocation 7894538 7965376 16050 86922 CM091754.1 scf7180000184146 99.37 True fake: scaffold gap size wrong estimation (local) 7965591 7969024 87001 90457 CM091754.1 scf7180000184146 98.1 True indel: indel (<= 5bp) 7969056 8123356 90488 244830 CM091754.1 scf7180000184146 99.55 True indel: indel (> 5bp) 8123382 8174315 244862 295853 CM091754.1 scf7180000184146 99.61 True indel: indel (> 5bp) 8174496 8284586 296051 406185 CM091754.1 scf7180000184146 99.53 True fake: scaffold gap size wrong estimation (local) 8284879 8285390 406239 406750 CM091754.1 scf7180000184146 99.61 True indel: indel (<= 5bp) 8285549 8286053 406914 407449 CM091754.1 scf7180000184146 97.1 True fake: scaffold gap size wrong estimation (local) 8286223 8565511 407686 686551 CM091754.1 scf7180000184146 99.14 True fake: scaffold gap size wrong estimation (local) 8565694 8590279 686664 711193 CM091754.1 scf7180000184146 99.34 True fake: scaffold gap size wrong estimation (local) 8590528 8592657 711397 713524 CM091754.1 scf7180000184146 99.39 True fake: scaffold gap size wrong estimation (local) 8592865 8596650 713683 717472 CM091754.1 scf7180000184146 99.53 True fake: scaffold gap size wrong estimation (local) 8596834 8721939 717561 842692 CM091754.1 scf7180000184146 99.67 True fake: scaffold gap size wrong estimation (local) 8722906 8834957 843209 955143 CM091754.1 scf7180000184146 99.59 True fake: not a misassembly (possible transposable element) 5344312 5345208 955201 956101 CM091754.1 scf7180000184146 98.85 True fake: not a misassembly (possible transposable element) 8835329 8839553 956102 960326 CM091754.1 scf7180000184146 99.69 True fake: scaffold gap size wrong estimation (local) 8839699 9106571 960454 1227618 CM091754.1 scf7180000184146 99.28 True CONTIG scf7180000184146 1227618 misassembled CONTIG scf7180000184147 441612 unaligned 8231653 8232160 509 1 CM091767.1 scf7180000184148 99.8 True fake: scaffold gap size wrong estimation (local) 8231052 8231568 1140 628 CM091767.1 scf7180000184148 98.99 True fake: scaffold gap size wrong estimation (local) 8226669 8229669 5287 2286 CM091767.1 scf7180000184148 99.97 True translocation, scaffold gap is present 5024162 5028684 5865 10390 CM091754.1 scf7180000184148 99.89 True fake: not a misassembly (possible transposable element) 16721265 16722909 12016 10422 CM091752.1 scf7180000184148 95.33 True fake: not a misassembly (possible transposable element) 5028939 5031927 12128 15222 CM091754.1 scf7180000184148 96.99 True fake: not a misassembly (possible transposable element) 16719310 16720304 16238 15243 CM091752.1 scf7180000184148 97.09 True fake: not a misassembly (possible transposable element) 5032687 5033283 16675 17271 CM091754.1 scf7180000184148 98.83 True fake: scaffold gap size wrong estimation (local) 5033453 5034840 18461 19878 CM091754.1 scf7180000184148 98.21 True translocation, scaffold gap is present 656485 657080 20259 20854 CM091760.1 scf7180000184148 99.5 True fake: scaffold gap size wrong estimation (local) 657081 658092 21142 22153 CM091760.1 scf7180000184148 100.0 True fake: scaffold gap size wrong estimation (local) 658506 664799 22635 28930 CM091760.1 scf7180000184148 99.92 True fake: scaffold gap size wrong estimation (local) 664990 713270 29096 77219 CM091760.1 scf7180000184148 99.63 True fake: scaffold gap size wrong estimation (local) 713319 749625 77262 113432 CM091760.1 scf7180000184148 99.19 True fake: scaffold gap size wrong estimation (local) 749866 751062 113651 114844 CM091760.1 scf7180000184148 99.58 True CONTIG scf7180000184148 114901 misassembled 14463542 14477094 34 13588 CM091757.1 scf7180000184149 99.72 True fake: scaffold gap size wrong estimation (local) 14477648 14479889 13891 16141 CM091757.1 scf7180000184149 98.49 True fake: scaffold gap size wrong estimation (local) 14479984 14480707 16339 17066 CM091757.1 scf7180000184149 97.8 True fake: scaffold gap size wrong estimation (local) 14482215 14507212 17552 42067 CM091757.1 scf7180000184149 97.27 True fake: scaffold gap size wrong estimation (local) 14508258 14509829 42991 44562 CM091757.1 scf7180000184149 99.94 True fake: scaffold gap size wrong estimation (local) 14510078 14521061 44602 55611 CM091757.1 scf7180000184149 99.47 True fake: scaffold gap size wrong estimation (local) 14521291 14531692 55794 66045 CM091757.1 scf7180000184149 96.77 True fake: scaffold gap size wrong estimation (local) 14531807 14532805 66113 67111 CM091757.1 scf7180000184149 99.4 True indel: indel (<= 5bp) 14532807 14534242 67112 68547 CM091757.1 scf7180000184149 99.79 True indel: indel (<= 5bp) 14534243 14534754 68549 69060 CM091757.1 scf7180000184149 99.02 True local misassembly 14535251 14536028 69228 70005 CM091757.1 scf7180000184149 100.0 True indel: indel (<= 5bp) 14536030 14537159 70006 71135 CM091757.1 scf7180000184149 99.82 True fake: scaffold gap size wrong estimation (local) 14538640 14539990 72385 73735 CM091757.1 scf7180000184149 100.0 True fake: scaffold gap size wrong estimation (local) 14540975 14543773 74565 77363 CM091757.1 scf7180000184149 99.89 True fake: scaffold gap size wrong estimation (local) 14544193 14544800 77673 78280 CM091757.1 scf7180000184149 100.0 True indel: indel (> 5bp) 14544841 14547248 78309 80716 CM091757.1 scf7180000184149 99.83 True indel: indel (<= 5bp) 14547600 14549128 81073 82601 CM091757.1 scf7180000184149 99.74 True indel: indel (<= 5bp) 14549130 14552595 82602 86067 CM091757.1 scf7180000184149 99.68 True indel: indel (<= 5bp) 14553013 14554178 86490 87655 CM091757.1 scf7180000184149 98.89 True fake: scaffold gap size wrong estimation (local) 14554179 14555128 87991 88940 CM091757.1 scf7180000184149 99.05 True fake: scaffold gap size wrong estimation (local) 14555522 14573986 89079 107539 CM091757.1 scf7180000184149 99.62 True fake: scaffold gap size wrong estimation (local) 14574349 14670002 107611 203022 CM091757.1 scf7180000184149 99.2 True fake: scaffold gap size wrong estimation (local) 14670126 14694195 203134 226988 CM091757.1 scf7180000184149 98.85 True fake: scaffold gap size wrong estimation (local) 14694367 14699459 227104 232196 CM091757.1 scf7180000184149 99.9 True fake: scaffold gap size wrong estimation (local) 14699672 14731235 232268 263858 CM091757.1 scf7180000184149 99.51 True fake: scaffold gap size wrong estimation (local) 14732022 14816785 264220 348709 CM091757.1 scf7180000184149 99.38 True fake: scaffold gap size wrong estimation (local) 14817710 14846729 349096 378092 CM091757.1 scf7180000184149 98.53 True fake: scaffold gap size wrong estimation (local) 14846955 14906458 378209 437549 CM091757.1 scf7180000184149 99.38 True fake: scaffold gap size wrong estimation (local) 14907492 14908867 438497 439877 CM091757.1 scf7180000184149 99.57 True CONTIG scf7180000184149 439877 correct 9134056 9135646 1 1519 CM091763.1 scf7180000184150 95.16 True fake: scaffold gap size wrong estimation (local) 9135812 9136937 1684 3534 CM091763.1 scf7180000184150 99.25 True relocation, scaffold gap is present, inconsistency = -98815 9038143 9066858 3555 31983 CM091763.1 scf7180000184150 97.52 True fake: scaffold gap size wrong estimation (local) 9067023 9115997 32075 80867 CM091763.1 scf7180000184150 98.89 True fake: scaffold gap size wrong estimation (local) 9116396 9133726 81643 99001 CM091763.1 scf7180000184150 99.58 True fake: scaffold gap size wrong estimation (local) 9140274 9140942 99022 99690 CM091763.1 scf7180000184150 99.85 True indel: indel (<= 5bp) 9140943 9141682 99692 100431 CM091763.1 scf7180000184150 100.0 True indel: indel (> 5bp) 9141694 9143588 100432 102326 CM091763.1 scf7180000184150 99.1 True local misassembly 9143589 9144816 103025 104252 CM091763.1 scf7180000184150 99.03 True relocation, inconsistency = 41167 9185984 9187455 104253 105723 CM091763.1 scf7180000184150 99.01 True relocation, inconsistency = 22483 9209939 9212339 105724 108123 CM091763.1 scf7180000184150 99.96 True fake: scaffold gap size wrong estimation (local) 9212239 9213100 108616 109477 CM091763.1 scf7180000184150 99.07 True fake: scaffold gap size wrong estimation (local) 9213239 9215158 109851 111792 CM091763.1 scf7180000184150 99.74 True fake: scaffold gap size wrong estimation (local) 9215906 9219125 113090 116174 CM091763.1 scf7180000184150 95.57 True local misassembly 9219761 9220323 116843 117404 CM091763.1 scf7180000184150 99.11 True fake: scaffold gap size wrong estimation (local) 9220456 9221320 117530 118394 CM091763.1 scf7180000184150 99.54 True CONTIG scf7180000184150 119097 misassembled 78103 78705 603 1 CM091753.1 scf7180000184151 99.83 True fake: scaffold gap size wrong estimation (local) 74500 75171 3352 2681 CM091753.1 scf7180000184151 99.55 True fake: scaffold gap size wrong estimation (local) 72676 73374 5394 4696 CM091753.1 scf7180000184151 99.86 True fake: scaffold gap size wrong estimation (local) 64851 72192 13241 5953 CM091753.1 scf7180000184151 99.19 True fake: scaffold gap size wrong estimation (local) 62568 64244 15476 13792 CM091753.1 scf7180000184151 99.58 True translocation, scaffold gap is present 16443809 16445316 17851 16346 CM091752.1 scf7180000184151 97.35 True fake: scaffold gap size wrong estimation (local) 16439753 16441261 20683 19216 CM091752.1 scf7180000184151 97.02 True fake: scaffold gap size wrong estimation (local) 16437160 16438973 23770 21961 CM091752.1 scf7180000184151 99.17 True fake: scaffold gap size wrong estimation (local) 16435549 16436211 25252 24590 CM091752.1 scf7180000184151 98.19 True fake: scaffold gap size wrong estimation (local) 16433900 16434711 26452 25641 CM091752.1 scf7180000184151 99.38 True translocation, scaffold gap is present 5234103 5235342 27267 28506 CM091768.1 scf7180000184151 99.11 True fake: scaffold gap size wrong estimation (local) 5235343 5237205 28760 30622 CM091768.1 scf7180000184151 99.52 True fake: scaffold gap size wrong estimation (local) 5237207 5239804 32218 34819 CM091768.1 scf7180000184151 99.77 True fake: scaffold gap size wrong estimation (local) 5240515 5248953 35515 43896 CM091768.1 scf7180000184151 98.75 True indel: indel (> 5bp) 5249036 5254740 44008 49877 CM091768.1 scf7180000184151 98.15 True relocation, inconsistency = 20744 5275485 5302788 49878 77234 CM091768.1 scf7180000184151 99.65 True fake: scaffold gap size wrong estimation (local) 5303164 5354034 77334 128405 CM091768.1 scf7180000184151 98.79 True fake: scaffold gap size wrong estimation (local) 5354275 5373047 128499 147335 CM091768.1 scf7180000184151 99.7 True CONTIG scf7180000184151 147335 misassembled 1260452 1261622 1174 3 CM091753.1 scf7180000184152 99.91 True fake: scaffold gap size wrong estimation (local) 1254693 1259547 6808 1954 CM091753.1 scf7180000184152 99.96 True fake: scaffold gap size wrong estimation (local) 1247468 1253033 13172 7609 CM091753.1 scf7180000184152 99.91 True fake: not a misassembly (possible transposable element) 422079 423375 13209 14505 CM091764.1 scf7180000184152 99.93 True fake: not a misassembly (possible transposable element) 1209184 1247545 51983 14506 CM091753.1 scf7180000184152 97.55 True fake: scaffold gap size wrong estimation (local) 1203127 1207837 57904 53196 CM091753.1 scf7180000184152 99.62 True fake: scaffold gap size wrong estimation (local) 1200029 1202668 60929 58276 CM091753.1 scf7180000184152 99.43 True fake: scaffold gap size wrong estimation (local) 1197361 1198361 63153 62153 CM091753.1 scf7180000184152 99.9 True fake: scaffold gap size wrong estimation (local) 1189795 1197286 70749 63581 CM091753.1 scf7180000184152 95.31 True fake: scaffold gap size wrong estimation (local) 1176030 1188075 83763 71714 CM091753.1 scf7180000184152 99.73 True fake: scaffold gap size wrong estimation (local) 1172699 1175899 87057 83855 CM091753.1 scf7180000184152 99.88 True fake: scaffold gap size wrong estimation (local) 1168276 1170947 90531 87860 CM091753.1 scf7180000184152 99.96 True fake: scaffold gap size wrong estimation (local) 1166352 1168514 93118 90959 CM091753.1 scf7180000184152 99.72 True fake: scaffold gap size wrong estimation (local) 1152702 1164298 105643 94047 CM091753.1 scf7180000184152 99.96 True fake: scaffold gap size wrong estimation (local) 1094494 1151038 161620 106751 CM091753.1 scf7180000184152 96.97 True fake: scaffold gap size wrong estimation (local) 1088551 1094379 167640 161803 CM091753.1 scf7180000184152 99.83 True fake: scaffold gap size wrong estimation (local) 1086486 1087924 169525 168087 CM091753.1 scf7180000184152 99.86 True fake: scaffold gap size wrong estimation (local) 1057282 1085042 197871 170513 CM091753.1 scf7180000184152 98.41 True fake: scaffold gap size wrong estimation (local) 1053628 1056490 201173 198311 CM091753.1 scf7180000184152 100.0 True fake: scaffold gap size wrong estimation (local) 1051214 1051848 202911 202277 CM091753.1 scf7180000184152 99.69 True fake: scaffold gap size wrong estimation (local) 1044559 1048930 209424 205052 CM091753.1 scf7180000184152 99.93 True fake: scaffold gap size wrong estimation (local) 1042333 1043678 211350 210005 CM091753.1 scf7180000184152 100.0 True fake: scaffold gap size wrong estimation (local) 1041075 1042332 212661 211404 CM091753.1 scf7180000184152 99.84 True indel: indel (<= 5bp) 1038349 1041074 215388 212663 CM091753.1 scf7180000184152 99.85 True indel: indel (> 5bp) 1037405 1038339 216323 215389 CM091753.1 scf7180000184152 99.57 True indel: indel (<= 5bp) 1036424 1037403 217303 216324 CM091753.1 scf7180000184152 99.8 True fake: scaffold gap size wrong estimation (local) 1028528 1035042 223890 217376 CM091753.1 scf7180000184152 99.98 True indel: indel (<= 5bp) 1024261 1028527 228158 223892 CM091753.1 scf7180000184152 98.15 True indel: indel (> 5bp) 1023703 1024205 228661 228159 CM091753.1 scf7180000184152 100.0 True indel: indel (<= 5bp) 1019727 1023702 232638 228663 CM091753.1 scf7180000184152 99.92 True fake: scaffold gap size wrong estimation (local) 1014644 1018754 237158 233048 CM091753.1 scf7180000184152 99.9 True fake: scaffold gap size wrong estimation (local) 1008834 1014477 242907 237263 CM091753.1 scf7180000184152 99.77 True fake: scaffold gap size wrong estimation (local) 996942 1008361 254182 243105 CM091753.1 scf7180000184152 96.68 True fake: scaffold gap size wrong estimation (local) 995893 996513 255148 254528 CM091753.1 scf7180000184152 99.68 True CONTIG scf7180000184152 255148 correct 17561384 17576330 1 14754 CM091751.1 scf7180000184153 98.36 True fake: scaffold gap size wrong estimation (local) 17577115 17578833 15413 17131 CM091751.1 scf7180000184153 100.0 True fake: scaffold gap size wrong estimation (local) 17578948 17604014 17333 42315 CM091751.1 scf7180000184153 99.29 True fake: scaffold gap size wrong estimation (local) 17604399 17617964 42448 56046 CM091751.1 scf7180000184153 99.82 True fake: scaffold gap size wrong estimation (local) 17617809 17619617 56514 58322 CM091751.1 scf7180000184153 100.0 True fake: scaffold gap size wrong estimation (local) 17620299 17620813 58716 59230 CM091751.1 scf7180000184153 100.0 True fake: scaffold gap size wrong estimation (local) 17621574 17622408 59369 60203 CM091751.1 scf7180000184153 99.64 True fake: scaffold gap size wrong estimation (local) 17623179 17624422 60965 62208 CM091751.1 scf7180000184153 99.68 True fake: scaffold gap size wrong estimation (local) 17624907 17635924 62301 73321 CM091751.1 scf7180000184153 99.86 True CONTIG scf7180000184153 73327 correct 336903 337881 1728 2706 CM091751.1 scf7180000184154 99.59 True indel: indel (<= 5bp) 337886 338646 2707 3467 CM091751.1 scf7180000184154 99.47 True fake: scaffold gap size wrong estimation (local) 339072 353634 3746 18383 CM091751.1 scf7180000184154 99.02 True fake: scaffold gap size wrong estimation (local) 353969 368116 18586 32695 CM091751.1 scf7180000184154 98.6 True fake: scaffold gap size wrong estimation (local) 368290 573028 32934 236644 CM091751.1 scf7180000184154 99.11 True fake: scaffold gap size wrong estimation (local) 574007 663992 237378 327317 CM091751.1 scf7180000184154 99.44 True fake: scaffold gap size wrong estimation (local) 663871 664398 327507 328034 CM091751.1 scf7180000184154 99.81 True fake: scaffold gap size wrong estimation (local) 664694 740787 328090 404086 CM091751.1 scf7180000184154 99.51 True fake: scaffold gap size wrong estimation (local) 740998 785944 404251 449159 CM091751.1 scf7180000184154 98.8 True indel: stretch of mismatches 786098 838275 449313 501682 CM091751.1 scf7180000184154 98.89 True indel: indel (> 5bp) 838392 842660 501747 506014 CM091751.1 scf7180000184154 99.65 True indel: indel (<= 5bp) 842711 905152 506061 568435 CM091751.1 scf7180000184154 99.47 True fake: scaffold gap size wrong estimation (local) 905495 932124 568684 595304 CM091751.1 scf7180000184154 99.55 True fake: scaffold gap size wrong estimation (local) 932707 934099 595736 597129 CM091751.1 scf7180000184154 99.21 True local misassembly 934887 935671 597384 598167 CM091751.1 scf7180000184154 99.11 True fake: scaffold gap size wrong estimation (local) 935714 1092853 598207 756965 CM091751.1 scf7180000184154 97.65 True fake: scaffold gap size wrong estimation (local) 1093265 1094813 757200 758748 CM091751.1 scf7180000184154 100.0 True fake: scaffold gap size wrong estimation (local) 1094946 1114098 758866 778040 CM091751.1 scf7180000184154 99.25 True fake: scaffold gap size wrong estimation (local) 1114378 1132895 778547 797044 CM091751.1 scf7180000184154 99.02 True fake: scaffold gap size wrong estimation (local) 1133113 1182761 797199 846877 CM091751.1 scf7180000184154 99.29 True fake: scaffold gap size wrong estimation (local) 1183294 1236237 847177 900162 CM091751.1 scf7180000184154 99.22 True translocation 9872725 9901175 927803 900163 CM091763.1 scf7180000184154 95.05 True fake: scaffold gap size wrong estimation (local) 9866296 9872571 934176 927913 CM091763.1 scf7180000184154 98.96 True fake: scaffold gap size wrong estimation (local) 9864259 9865473 936650 935436 CM091763.1 scf7180000184154 99.34 True local misassembly 9862717 9863750 938208 937175 CM091763.1 scf7180000184154 99.32 True fake: scaffold gap size wrong estimation (local) 9861040 9862171 940427 939296 CM091763.1 scf7180000184154 99.03 True fake: scaffold gap size wrong estimation (local) 9857969 9860455 943012 940518 CM091763.1 scf7180000184154 98.8 True local misassembly 9856539 9857267 944169 943441 CM091763.1 scf7180000184154 99.18 True fake: scaffold gap size wrong estimation (local) 9854899 9855664 945836 945071 CM091763.1 scf7180000184154 99.35 True indel: indel (<= 5bp) 9854011 9854898 946727 945840 CM091763.1 scf7180000184154 99.66 True indel: indel (> 5bp) 9852823 9853861 947907 946869 CM091763.1 scf7180000184154 99.33 True local misassembly 9851017 9852398 949354 947973 CM091763.1 scf7180000184154 99.78 True indel: stretch of mismatches 9848843 9850747 951528 949624 CM091763.1 scf7180000184154 99.16 True fake: scaffold gap size wrong estimation (local) 9844934 9846711 954008 952196 CM091763.1 scf7180000184154 98.05 True indel: indel (> 5bp) 9840107 9844873 958834 954076 CM091763.1 scf7180000184154 98.54 True indel: indel (<= 5bp) 9839332 9840082 959614 958864 CM091763.1 scf7180000184154 99.6 True indel: indel (<= 5bp) 9838528 9839331 960419 959616 CM091763.1 scf7180000184154 99.75 True local misassembly 9836778 9837893 962164 961049 CM091763.1 scf7180000184154 99.82 True indel: indel (<= 5bp) 9836149 9836773 962796 962172 CM091763.1 scf7180000184154 100.0 True local misassembly 9834235 9834899 964176 963512 CM091763.1 scf7180000184154 99.4 True indel: stretch of mismatches 9832866 9833833 965545 964578 CM091763.1 scf7180000184154 99.38 True indel: indel (<= 5bp) 9831954 9832865 966458 965547 CM091763.1 scf7180000184154 99.78 True indel: indel (> 5bp) 9831113 9831880 967281 966514 CM091763.1 scf7180000184154 99.87 True local misassembly 9828877 9829547 969306 968636 CM091763.1 scf7180000184154 99.55 True indel: indel (<= 5bp) 9827755 9828876 970429 969308 CM091763.1 scf7180000184154 99.82 True local misassembly 9825952 9827186 972236 971002 CM091763.1 scf7180000184154 99.51 True indel: indel (<= 5bp) 9824477 9825951 973712 972238 CM091763.1 scf7180000184154 99.19 True fake: scaffold gap size wrong estimation (local) 9821914 9824362 976423 973975 CM091763.1 scf7180000184154 99.06 True local misassembly 9817779 9819304 979905 978380 CM091763.1 scf7180000184154 99.67 True local misassembly 9814795 9815958 982915 981752 CM091763.1 scf7180000184154 98.71 True indel: indel (<= 5bp) 9813406 9814441 984306 983271 CM091763.1 scf7180000184154 99.52 True indel: indel (<= 5bp) 9812601 9813268 985115 984448 CM091763.1 scf7180000184154 100.0 True indel: indel (<= 5bp) 9811486 9812312 986235 985409 CM091763.1 scf7180000184154 99.15 True local misassembly 9809741 9810278 987980 987443 CM091763.1 scf7180000184154 99.44 True fake: scaffold gap size wrong estimation (local) 9808424 9809277 989295 988442 CM091763.1 scf7180000184154 99.3 True indel: indel (> 5bp) 9807197 9808423 990530 989304 CM091763.1 scf7180000184154 99.19 True local misassembly 9805358 9806548 992171 990981 CM091763.1 scf7180000184154 98.91 True indel: indel (<= 5bp) 9804484 9805356 993044 992172 CM091763.1 scf7180000184154 99.43 True indel: indel (> 5bp) 9803395 9804483 994149 993061 CM091763.1 scf7180000184154 99.54 True indel: indel (<= 5bp) 9802743 9803394 994803 994152 CM091763.1 scf7180000184154 99.69 True local misassembly 9800035 9801079 997520 996476 CM091763.1 scf7180000184154 99.9 True indel: indel (<= 5bp) 9798807 9800032 998746 997521 CM091763.1 scf7180000184154 99.43 True indel: indel (<= 5bp) 9797991 9798806 999563 998748 CM091763.1 scf7180000184154 99.75 True indel: indel (<= 5bp) 9796816 9797629 1000734 999921 CM091763.1 scf7180000184154 99.63 True fake: scaffold gap size wrong estimation (local) 9795726 9796633 1001841 1000934 CM091763.1 scf7180000184154 99.56 True indel: indel (<= 5bp) 9794522 9795253 1003043 1002312 CM091763.1 scf7180000184154 99.59 True indel: indel (<= 5bp) 9793254 9794521 1004312 1003045 CM091763.1 scf7180000184154 99.53 True local misassembly 9789356 9792339 1007784 1004801 CM091763.1 scf7180000184154 99.6 True local misassembly 9787218 9788449 1009781 1008550 CM091763.1 scf7180000184154 99.59 True indel: indel (<= 5bp) 9785579 9787217 1011421 1009783 CM091763.1 scf7180000184154 99.39 True local misassembly 9783365 9784913 1012970 1011422 CM091763.1 scf7180000184154 98.39 True indel: indel (<= 5bp) 9781215 9783364 1015121 1012972 CM091763.1 scf7180000184154 98.19 True local misassembly 9778242 9778752 1017223 1016713 CM091763.1 scf7180000184154 98.63 True indel: indel (<= 5bp) 9776929 9778070 1018538 1017397 CM091763.1 scf7180000184154 99.56 True indel: indel (<= 5bp) 9775715 9776928 1019753 1018540 CM091763.1 scf7180000184154 99.26 True indel: indel (<= 5bp) 9774981 9775711 1020484 1019754 CM091763.1 scf7180000184154 98.91 True local misassembly 9772636 9773558 1022055 1021133 CM091763.1 scf7180000184154 99.67 True local misassembly 9769853 9772062 1024824 1022615 CM091763.1 scf7180000184154 99.28 True indel: indel (> 5bp) 9768765 9769732 1025932 1024965 CM091763.1 scf7180000184154 99.48 True local misassembly 9741059 9768447 1053162 1026045 CM091763.1 scf7180000184154 97.46 True fake: scaffold gap size wrong estimation (local) 9569484 9740821 1223658 1053312 CM091763.1 scf7180000184154 98.59 True fake: scaffold gap size wrong estimation (local) 9505636 9569211 1287166 1223881 CM091763.1 scf7180000184154 98.46 True fake: scaffold gap size wrong estimation (local) 9479010 9505451 1313115 1287300 CM091763.1 scf7180000184154 96.39 True indel: indel (> 5bp) 9298098 9478977 1494986 1313142 CM091763.1 scf7180000184154 98.54 True indel: indel (> 5bp) 9254848 9297954 1538251 1495153 CM091763.1 scf7180000184154 99.21 True relocation, scaffold gap is present, inconsistency = 13930 9239002 9239814 1540151 1539355 CM091763.1 scf7180000184154 95.97 True fake: scaffold gap size wrong estimation (local) 9236916 9237869 1541124 1540172 CM091763.1 scf7180000184154 99.27 True local misassembly 9238522 9239038 1543583 1543067 CM091763.1 scf7180000184154 100.0 True fake: scaffold gap size wrong estimation (local) 9227934 9230108 1547643 1545470 CM091763.1 scf7180000184154 99.26 True fake: not a misassembly (possible transposable element) 11434921 11439464 1552291 1547695 CM091765.1 scf7180000184154 98.42 True fake: not a misassembly (possible transposable element) 9223803 9226365 1555346 1552784 CM091763.1 scf7180000184154 99.8 True translocation, scaffold gap is present 16594452 16597843 1559285 1555905 CM091752.1 scf7180000184154 98.93 True translocation, scaffold gap is present 11432478 11434112 1560926 1559319 CM091765.1 scf7180000184154 96.9 True fake: scaffold gap size wrong estimation (local) 11429333 11432654 1564764 1561449 CM091765.1 scf7180000184154 99.37 True fake: scaffold gap size wrong estimation (local) 11427276 11429163 1566856 1565015 CM091765.1 scf7180000184154 97.43 True CONTIG scf7180000184154 1566856 misassembled 3235741 3237226 2233 748 CM091754.1 scf7180000184155 99.6 True fake: scaffold gap size wrong estimation (local) 3234155 3235614 3846 2387 CM091754.1 scf7180000184155 99.66 True indel: indel (<= 5bp) 3233327 3234154 4675 3848 CM091754.1 scf7180000184155 98.19 True local misassembly 3232252 3232760 5184 4676 CM091754.1 scf7180000184155 99.41 True indel: indel (<= 5bp) 3231230 3232250 6205 5185 CM091754.1 scf7180000184155 99.22 True indel: indel (<= 5bp) 3230465 3231229 6971 6207 CM091754.1 scf7180000184155 99.61 True indel: indel (<= 5bp) 3227699 3230461 9734 6972 CM091754.1 scf7180000184155 99.35 True indel: indel (<= 5bp) 3226294 3227338 11141 10097 CM091754.1 scf7180000184155 99.9 True indel: indel (> 5bp) 3225571 3226287 11858 11142 CM091754.1 scf7180000184155 99.44 True indel: stretch of mismatches 3223248 3225186 14181 12243 CM091754.1 scf7180000184155 99.07 True indel: indel (<= 5bp) 3222698 3223243 14727 14182 CM091754.1 scf7180000184155 99.27 True indel: indel (<= 5bp) 3220774 3222697 16654 14731 CM091754.1 scf7180000184155 99.74 True local misassembly 3218831 3219575 17399 16655 CM091754.1 scf7180000184155 99.06 True local misassembly 3217203 3218175 18991 18019 CM091754.1 scf7180000184155 99.18 True local misassembly 3215508 3216217 19701 18992 CM091754.1 scf7180000184155 99.72 True indel: indel (> 5bp) 3214504 3215500 20698 19702 CM091754.1 scf7180000184155 99.7 True indel: indel (<= 5bp) 3213942 3214501 21258 20699 CM091754.1 scf7180000184155 98.21 True indel: indel (<= 5bp) 3213034 3213941 22168 21261 CM091754.1 scf7180000184155 99.56 True fake: scaffold gap size wrong estimation (local) 3211039 3212616 24143 22566 CM091754.1 scf7180000184155 99.05 True indel: indel (<= 5bp) 3208563 3211037 26618 24144 CM091754.1 scf7180000184155 99.39 True indel: indel (<= 5bp) 3207799 3208562 27383 26620 CM091754.1 scf7180000184155 98.82 True indel: indel (<= 5bp) 3205843 3207798 29340 27385 CM091754.1 scf7180000184155 99.8 True indel: indel (<= 5bp) 3204735 3205840 30446 29341 CM091754.1 scf7180000184155 99.28 True indel: indel (<= 5bp) 3203088 3204364 32088 30812 CM091754.1 scf7180000184155 99.77 True local misassembly 3201796 3202333 33292 32755 CM091754.1 scf7180000184155 99.44 True indel: indel (> 5bp) 3201134 3201795 33967 33306 CM091754.1 scf7180000184155 96.83 True indel: indel (> 5bp) 3199884 3201095 35226 34015 CM091754.1 scf7180000184155 99.59 True indel: indel (> 5bp) 3199113 3199650 35951 35414 CM091754.1 scf7180000184155 99.81 True fake: scaffold gap size wrong estimation (local) 3196321 3198383 38864 36802 CM091754.1 scf7180000184155 99.47 True fake: scaffold gap size wrong estimation (local) 3188005 3196078 47107 39069 CM091754.1 scf7180000184155 98.14 True fake: scaffold gap size wrong estimation (local) 3185064 3185668 49666 49062 CM091754.1 scf7180000184155 100.0 True fake: scaffold gap size wrong estimation (local) 3180881 3183335 54112 51658 CM091754.1 scf7180000184155 99.27 True fake: scaffold gap size wrong estimation (local) 3179931 3180435 55061 54557 CM091754.1 scf7180000184155 99.6 True indel: indel (<= 5bp) 3178791 3179489 56202 55504 CM091754.1 scf7180000184155 98.86 True indel: indel (<= 5bp) 3178141 3178790 56853 56204 CM091754.1 scf7180000184155 99.38 True indel: indel (<= 5bp) 3176671 3178140 58324 56855 CM091754.1 scf7180000184155 99.59 True local misassembly 3175481 3176467 59311 58325 CM091754.1 scf7180000184155 99.7 True indel: indel (> 5bp) 3174829 3175393 59971 59407 CM091754.1 scf7180000184155 98.76 True indel: indel (<= 5bp) 3173170 3174827 61629 59972 CM091754.1 scf7180000184155 99.1 True local misassembly 3171432 3171957 63146 62621 CM091754.1 scf7180000184155 98.48 True fake: scaffold gap size wrong estimation (local) 3168839 3170019 65919 64739 CM091754.1 scf7180000184155 99.75 True fake: scaffold gap size wrong estimation (local) 3166807 3167357 67944 67394 CM091754.1 scf7180000184155 99.46 True fake: scaffold gap size wrong estimation (local) 3164106 3165184 70480 69402 CM091754.1 scf7180000184155 99.91 True indel: indel (<= 5bp) 3163001 3164104 71584 70481 CM091754.1 scf7180000184155 99.46 True fake: scaffold gap size wrong estimation (local) 3160455 3162828 74121 71755 CM091754.1 scf7180000184155 99.11 True fake: scaffold gap size wrong estimation (local) 3154144 3156178 79830 77796 CM091754.1 scf7180000184155 98.82 True fake: scaffold gap size wrong estimation (local) 3152481 3153093 81502 80890 CM091754.1 scf7180000184155 99.35 True fake: scaffold gap size wrong estimation (local) 3151871 3152480 82141 81532 CM091754.1 scf7180000184155 99.18 True indel: indel (> 5bp) 3151218 3151850 82774 82142 CM091754.1 scf7180000184155 100.0 True local misassembly 3149583 3150202 84410 83791 CM091754.1 scf7180000184155 98.06 True local misassembly 3147097 3149016 86389 84470 CM091754.1 scf7180000184155 99.11 True fake: scaffold gap size wrong estimation (local) 3145654 3146510 87852 86996 CM091754.1 scf7180000184155 99.3 True indel: indel (<= 5bp) 3144822 3145452 88685 88055 CM091754.1 scf7180000184155 98.26 True fake: scaffold gap size wrong estimation (local) 3140983 3142996 92739 90726 CM091754.1 scf7180000184155 99.45 True fake: scaffold gap size wrong estimation (local) 3122134 3140141 111371 93327 CM091754.1 scf7180000184155 99.42 True fake: scaffold gap size wrong estimation (local) 3113466 3121898 120015 111570 CM091754.1 scf7180000184155 99.29 True fake: scaffold gap size wrong estimation (local) 3105284 3113161 127752 120108 CM091754.1 scf7180000184155 95.43 True fake: scaffold gap size wrong estimation (local) 3100266 3105081 132761 127920 CM091754.1 scf7180000184155 98.56 True fake: scaffold gap size wrong estimation (local) 3097876 3100143 135136 132861 CM091754.1 scf7180000184155 98.95 True fake: scaffold gap size wrong estimation (local) 3091778 3095647 140796 136897 CM091754.1 scf7180000184155 98.61 True fake: scaffold gap size wrong estimation (local) 3077753 3091643 154310 140942 CM091754.1 scf7180000184155 95.09 True indel: indel (> 5bp) 3063188 3077691 168818 154388 CM091754.1 scf7180000184155 98.82 True fake: scaffold gap size wrong estimation (local) 3060903 3062977 171066 168992 CM091754.1 scf7180000184155 99.37 True fake: scaffold gap size wrong estimation (local) 3059078 3059709 172858 172227 CM091754.1 scf7180000184155 99.21 True indel: stretch of mismatches 3057579 3058842 174357 173094 CM091754.1 scf7180000184155 99.84 True indel: indel (<= 5bp) 3056160 3057578 175779 174361 CM091754.1 scf7180000184155 99.65 True indel: indel (<= 5bp) 3055379 3056158 176559 175780 CM091754.1 scf7180000184155 99.49 True local misassembly 3054251 3054807 177116 176560 CM091754.1 scf7180000184155 99.28 True indel: indel (<= 5bp) 3053527 3054249 177839 177117 CM091754.1 scf7180000184155 99.45 True fake: scaffold gap size wrong estimation (local) 3052088 3052761 179133 178460 CM091754.1 scf7180000184155 99.26 True indel: indel (<= 5bp) 3051540 3052087 179682 179135 CM091754.1 scf7180000184155 98.72 True indel: indel (<= 5bp) 3050054 3051539 181169 179684 CM091754.1 scf7180000184155 99.26 True fake: scaffold gap size wrong estimation (local) 3047061 3048286 183900 182675 CM091754.1 scf7180000184155 99.59 True indel: stretch of mismatches 3046078 3046666 184883 184295 CM091754.1 scf7180000184155 100.0 True local misassembly 3044788 3045373 186154 185569 CM091754.1 scf7180000184155 99.66 True local misassembly 3041030 3042426 189169 187773 CM091754.1 scf7180000184155 99.64 True indel: indel (> 5bp) 3040431 3041029 189781 189183 CM091754.1 scf7180000184155 99.67 True indel: indel (<= 5bp) 3039749 3040430 190464 189783 CM091754.1 scf7180000184155 99.56 True local misassembly 3038610 3039209 191607 191008 CM091754.1 scf7180000184155 99.67 True indel: indel (<= 5bp) 3037376 3038177 192842 192041 CM091754.1 scf7180000184155 99.75 True indel: indel (<= 5bp) 3035962 3037326 194258 192894 CM091754.1 scf7180000184155 99.63 True indel: indel (<= 5bp) 3034100 3035510 196117 194707 CM091754.1 scf7180000184155 99.01 True fake: scaffold gap size wrong estimation (local) 3025140 3033489 204784 196593 CM091754.1 scf7180000184155 96.06 True local misassembly 3021586 3025128 208457 204894 CM091754.1 scf7180000184155 98.92 True fake: scaffold gap size wrong estimation (local) 3020057 3020783 209989 209263 CM091754.1 scf7180000184155 98.49 True indel: stretch of mismatches 3018719 3019712 211327 210334 CM091754.1 scf7180000184155 99.4 True indel: indel (<= 5bp) 3017214 3018592 212837 211459 CM091754.1 scf7180000184155 99.06 True indel: indel (<= 5bp) 3016552 3017212 213498 212838 CM091754.1 scf7180000184155 99.7 True indel: indel (<= 5bp) 3014148 3016380 215903 213671 CM091754.1 scf7180000184155 99.33 True local misassembly 3012974 3013545 216475 215904 CM091754.1 scf7180000184155 99.65 True indel: indel (<= 5bp) 3012199 3012972 217249 216476 CM091754.1 scf7180000184155 99.1 True fake: scaffold gap size wrong estimation (local) 3010736 3012160 218706 217282 CM091754.1 scf7180000184155 99.51 True indel: indel (<= 5bp) 3010203 3010735 219240 218708 CM091754.1 scf7180000184155 98.69 True fake: scaffold gap size wrong estimation (local) 3008502 3009740 221000 219772 CM091754.1 scf7180000184155 98.55 True fake: scaffold gap size wrong estimation (local) 3006264 3006825 222494 221933 CM091754.1 scf7180000184155 99.11 True indel: indel (> 5bp) 3005519 3006083 223228 222664 CM091754.1 scf7180000184155 96.64 True fake: scaffold gap size wrong estimation (local) 3004848 3005518 223916 223246 CM091754.1 scf7180000184155 99.7 True fake: scaffold gap size wrong estimation (local) 3002233 3002932 225359 224660 CM091754.1 scf7180000184155 100.0 True fake: scaffold gap size wrong estimation (local) 3000333 3001047 227608 226894 CM091754.1 scf7180000184155 98.46 True indel: indel (<= 5bp) 2999486 3000002 228457 227941 CM091754.1 scf7180000184155 99.42 True indel: indel (<= 5bp) 2997069 2999123 230877 228823 CM091754.1 scf7180000184155 99.56 True indel: indel (<= 5bp) 2996153 2997068 231794 230879 CM091754.1 scf7180000184155 99.45 True indel: indel (<= 5bp) 2995043 2996152 232905 231796 CM091754.1 scf7180000184155 99.73 True indel: indel (<= 5bp) 2994520 2995042 233429 232907 CM091754.1 scf7180000184155 100.0 True fake: scaffold gap size wrong estimation (local) 2992486 2993305 235072 234253 CM091754.1 scf7180000184155 99.51 True local misassembly 2990155 2991363 236940 235732 CM091754.1 scf7180000184155 98.59 True fake: scaffold gap size wrong estimation (local) 2982001 2988633 244529 237910 CM091754.1 scf7180000184155 98.73 True fake: scaffold gap size wrong estimation (local) 2978623 2979963 247739 246399 CM091754.1 scf7180000184155 99.03 True fake: scaffold gap size wrong estimation (local) 2969241 2977314 257587 249736 CM091754.1 scf7180000184155 95.65 True indel: indel (> 5bp) 2960514 2969170 266125 257676 CM091754.1 scf7180000184155 95.4 True fake: scaffold gap size wrong estimation (local) 2951756 2960426 274693 266215 CM091754.1 scf7180000184155 95.98 True fake: scaffold gap size wrong estimation (local) 2950129 2951475 276304 274958 CM091754.1 scf7180000184155 99.7 True indel: indel (<= 5bp) 2949414 2950126 277017 276305 CM091754.1 scf7180000184155 99.02 True local misassembly 2946843 2947810 279074 278107 CM091754.1 scf7180000184155 99.69 True fake: scaffold gap size wrong estimation (local) 2946089 2946592 279847 279344 CM091754.1 scf7180000184155 99.01 True translocation, scaffold gap is present 4622848 4635384 280742 293281 CM091751.1 scf7180000184155 99.42 True indel: indel (> 5bp) 4635415 4726348 293333 384144 CM091751.1 scf7180000184155 99.49 True fake: scaffold gap size wrong estimation (local) 4726476 4786133 384367 443912 CM091751.1 scf7180000184155 98.94 True fake: scaffold gap size wrong estimation (local) 4786322 4797994 444006 455703 CM091751.1 scf7180000184155 98.71 True fake: scaffold gap size wrong estimation (local) 4798549 4812840 456082 470395 CM091751.1 scf7180000184155 99.22 True fake: scaffold gap size wrong estimation (local) 4812903 4821175 470555 478647 CM091751.1 scf7180000184155 96.08 True fake: scaffold gap size wrong estimation (local) 4821614 4824376 478757 481526 CM091751.1 scf7180000184155 99.35 True fake: scaffold gap size wrong estimation (local) 4824850 4842636 481683 499490 CM091751.1 scf7180000184155 98.87 True fake: scaffold gap size wrong estimation (local) 4842879 4859115 499810 516197 CM091751.1 scf7180000184155 97.79 True indel: indel (> 5bp) 4859215 4949137 516251 605432 CM091751.1 scf7180000184155 97.87 True fake: scaffold gap size wrong estimation (local) 4949393 4992367 605519 648341 CM091751.1 scf7180000184155 99.05 True fake: scaffold gap size wrong estimation (local) 4992464 5047807 648426 703894 CM091751.1 scf7180000184155 99.22 True local misassembly 5048555 5053117 704784 709340 CM091751.1 scf7180000184155 99.01 True fake: scaffold gap size wrong estimation (local) 5053729 5141703 709703 797484 CM091751.1 scf7180000184155 98.87 True fake: scaffold gap size wrong estimation (local) 5141932 5194178 797593 849658 CM091751.1 scf7180000184155 98.67 True fake: scaffold gap size wrong estimation (local) 5194285 5252913 849740 908429 CM091751.1 scf7180000184155 99.19 True fake: scaffold gap size wrong estimation (local) 5253221 5378753 908599 1034075 CM091751.1 scf7180000184155 99.44 True CONTIG scf7180000184155 1036397 misassembled 4470436 4474827 1 4395 CM091768.1 scf7180000184156 99.16 True fake: scaffold gap size wrong estimation (local) 4475681 4476892 4852 6062 CM091768.1 scf7180000184156 99.83 True fake: scaffold gap size wrong estimation (local) 4478623 4479877 7629 8915 CM091768.1 scf7180000184156 99.92 True fake: scaffold gap size wrong estimation (local) 4480638 4481644 9502 10521 CM091768.1 scf7180000184156 100.0 True fake: scaffold gap size wrong estimation (local) 4483394 4484199 11745 12550 CM091768.1 scf7180000184156 97.39 True fake: scaffold gap size wrong estimation (local) 4484310 4488456 12643 16816 CM091768.1 scf7180000184156 99.61 True fake: scaffold gap size wrong estimation (local) 4488847 4489904 17352 18409 CM091768.1 scf7180000184156 100.0 True fake: scaffold gap size wrong estimation (local) 4491464 4492237 19180 19953 CM091768.1 scf7180000184156 99.87 True fake: scaffold gap size wrong estimation (local) 4493750 4494684 21432 22366 CM091768.1 scf7180000184156 100.0 True fake: scaffold gap size wrong estimation (local) 4496963 4498970 24437 26472 CM091768.1 scf7180000184156 99.26 True fake: scaffold gap size wrong estimation (local) 4499403 4502065 26946 29631 CM091768.1 scf7180000184156 99.77 True fake: scaffold gap size wrong estimation (local) 4502671 4504436 30263 32027 CM091768.1 scf7180000184156 99.94 True fake: scaffold gap size wrong estimation (local) 4505247 4507617 32706 35078 CM091768.1 scf7180000184156 99.71 True translocation 1751918 1753758 36919 35079 CM091754.1 scf7180000184156 99.63 True fake: scaffold gap size wrong estimation (local) 1749540 1750910 39000 37630 CM091754.1 scf7180000184156 99.78 True indel: indel (> 5bp) 1748034 1749057 40512 39489 CM091754.1 scf7180000184156 99.51 True indel: indel (<= 5bp) 1746006 1748032 42539 40513 CM091754.1 scf7180000184156 99.56 True local misassembly 1745204 1745886 43222 42540 CM091754.1 scf7180000184156 99.12 True indel: indel (<= 5bp) 1741423 1745203 47004 43224 CM091754.1 scf7180000184156 99.89 True indel: indel (<= 5bp) 1740490 1741336 47939 47093 CM091754.1 scf7180000184156 99.65 True indel: indel (<= 5bp) 1739317 1740448 49115 47984 CM091754.1 scf7180000184156 99.38 True indel: indel (> 5bp) 1737765 1739019 50674 49420 CM091754.1 scf7180000184156 99.52 True indel: indel (<= 5bp) 1736800 1737764 51640 50676 CM091754.1 scf7180000184156 99.79 True local misassembly 1735639 1736247 52805 52197 CM091754.1 scf7180000184156 100.0 True indel: indel (<= 5bp) 1734003 1735637 54440 52806 CM091754.1 scf7180000184156 99.63 True indel: indel (<= 5bp) 1733340 1734001 55102 54441 CM091754.1 scf7180000184156 99.4 True fake: scaffold gap size wrong estimation (local) 1730386 1733160 58063 55289 CM091754.1 scf7180000184156 99.82 True indel: indel (<= 5bp) 1729645 1730268 58807 58184 CM091754.1 scf7180000184156 96.63 True local misassembly 1728404 1729222 59844 59026 CM091754.1 scf7180000184156 99.88 True indel: indel (<= 5bp) 1725954 1728403 62295 59846 CM091754.1 scf7180000184156 99.8 True indel: indel (<= 5bp) 1725169 1725952 63079 62296 CM091754.1 scf7180000184156 99.49 True indel: indel (<= 5bp) 1723204 1725167 65043 63080 CM091754.1 scf7180000184156 99.49 True indel: indel (<= 5bp) 1722473 1723200 65771 65044 CM091754.1 scf7180000184156 99.45 True indel: stretch of mismatches 1719797 1722280 68447 65964 CM091754.1 scf7180000184156 99.6 True indel: indel (> 5bp) 1717742 1719796 70508 68454 CM091754.1 scf7180000184156 99.61 True indel: indel (> 5bp) 1716327 1717601 71930 70656 CM091754.1 scf7180000184156 99.69 True indel: indel (<= 5bp) 1715687 1716240 72571 72018 CM091754.1 scf7180000184156 99.64 True indel: indel (<= 5bp) 1713287 1715685 74970 72572 CM091754.1 scf7180000184156 99.71 True local misassembly 1705487 1708027 77511 74971 CM091754.1 scf7180000184156 99.84 True indel: indel (<= 5bp) 1704694 1705485 78303 77512 CM091754.1 scf7180000184156 99.75 True indel: indel (<= 5bp) 1702403 1704687 80599 78315 CM091754.1 scf7180000184156 99.43 True indel: indel (> 5bp) 1701382 1702043 81629 80968 CM091754.1 scf7180000184156 99.7 True indel: indel (> 5bp) 1700402 1701149 82615 81868 CM091754.1 scf7180000184156 100.0 True indel: indel (<= 5bp) 1699699 1700401 83319 82617 CM091754.1 scf7180000184156 99.43 True indel: indel (<= 5bp) 1699078 1699698 83941 83321 CM091754.1 scf7180000184156 99.68 True fake: scaffold gap size wrong estimation (local) 1697696 1698454 85334 84576 CM091754.1 scf7180000184156 99.34 True indel: indel (<= 5bp) 1696547 1697645 86488 85390 CM091754.1 scf7180000184156 99.45 True indel: indel (<= 5bp) 1695386 1696546 87650 86490 CM091754.1 scf7180000184156 99.22 True fake: scaffold gap size wrong estimation (local) 1694192 1695038 88794 87948 CM091754.1 scf7180000184156 99.41 True indel: indel (<= 5bp) 1692536 1694189 90448 88795 CM091754.1 scf7180000184156 99.4 True indel: indel (<= 5bp) 1691885 1692535 91100 90450 CM091754.1 scf7180000184156 99.85 True indel: indel (<= 5bp) 1687366 1691884 95622 91104 CM091754.1 scf7180000184156 99.67 True local misassembly 1684061 1685749 98924 97236 CM091754.1 scf7180000184156 99.47 True indel: indel (<= 5bp) 1683114 1684059 99870 98925 CM091754.1 scf7180000184156 99.68 True indel: stretch of mismatches 1682292 1683003 100692 99981 CM091754.1 scf7180000184156 99.3 True indel: indel (<= 5bp) 1680963 1682291 102022 100694 CM091754.1 scf7180000184156 99.7 True indel: indel (<= 5bp) 1680401 1680962 102586 102025 CM091754.1 scf7180000184156 99.64 True indel: indel (> 5bp) 1678756 1680400 104239 102595 CM091754.1 scf7180000184156 98.91 True indel: indel (> 5bp) 1677521 1678523 105466 104464 CM091754.1 scf7180000184156 99.5 True indel: indel (<= 5bp) 1675990 1677047 106993 105936 CM091754.1 scf7180000184156 99.43 True local misassembly 1660807 1675447 122182 107531 CM091754.1 scf7180000184156 99.16 True fake: scaffold gap size wrong estimation (local) 1638291 1660644 144612 122247 CM091754.1 scf7180000184156 98.99 True fake: scaffold gap size wrong estimation (local) 1611421 1638178 171395 144718 CM091754.1 scf7180000184156 98.74 True fake: scaffold gap size wrong estimation (local) 1609389 1611181 173404 171612 CM091754.1 scf7180000184156 99.44 True fake: scaffold gap size wrong estimation (local) 1608102 1608679 174615 174035 CM091754.1 scf7180000184156 98.97 True fake: scaffold gap size wrong estimation (local) 1600663 1607846 181815 174810 CM091754.1 scf7180000184156 96.71 True translocation, scaffold gap is present 4496024 4496558 182205 182754 CM091768.1 scf7180000184156 98.87 True CONTIG scf7180000184156 182754 misassembled 5071077 5074724 1 3660 CM091768.1 scf7180000184157 99.69 True fake: scaffold gap size wrong estimation (local) 5075952 5076857 4647 5552 CM091768.1 scf7180000184157 98.68 True local misassembly 5077427 5078357 6129 7059 CM091768.1 scf7180000184157 98.82 True fake: scaffold gap size wrong estimation (local) 5078746 5079762 7938 8954 CM091768.1 scf7180000184157 99.9 True indel: indel (<= 5bp) 5079765 5081761 8955 10951 CM091768.1 scf7180000184157 99.6 True fake: scaffold gap size wrong estimation (local) 5082524 5085606 11225 14307 CM091768.1 scf7180000184157 98.18 True indel: indel (<= 5bp) 5085607 5086270 14309 14972 CM091768.1 scf7180000184157 100.0 True fake: scaffold gap size wrong estimation (local) 5086896 5089238 15205 17547 CM091768.1 scf7180000184157 99.66 True fake: scaffold gap size wrong estimation (local) 5089239 5091241 17569 19571 CM091768.1 scf7180000184157 100.0 True local misassembly 5091583 5092248 19572 20237 CM091768.1 scf7180000184157 96.85 True indel: indel (> 5bp) 5092258 5092818 20238 20798 CM091768.1 scf7180000184157 96.43 True fake: scaffold gap size wrong estimation (local) 5093409 5094533 21221 22345 CM091768.1 scf7180000184157 98.04 True indel: indel (<= 5bp) 5094534 5096269 22347 24082 CM091768.1 scf7180000184157 100.0 True fake: scaffold gap size wrong estimation (local) 5096877 5100898 24505 28625 CM091768.1 scf7180000184157 98.05 True fake: scaffold gap size wrong estimation (local) 5101744 5104554 29138 31956 CM091768.1 scf7180000184157 99.43 True CONTIG scf7180000184157 31965 correct 14135680 14137829 1 2150 CM091753.1 scf7180000184158 99.44 True translocation 9359601 9360688 3238 2151 CM091767.1 scf7180000184158 100.0 True fake: scaffold gap size wrong estimation (local) 9356545 9358661 6174 4057 CM091767.1 scf7180000184158 99.95 True fake: scaffold gap size wrong estimation (local) 9352748 9353484 6938 6202 CM091767.1 scf7180000184158 100.0 True fake: scaffold gap size wrong estimation (local) 9351081 9352747 8854 7188 CM091767.1 scf7180000184158 99.82 True translocation 1589631 1590400 9623 8855 CM091764.1 scf7180000184158 99.5 True translocation, scaffold gap is present 23084 25543 12900 10465 CM091761.1 scf7180000184158 97.69 True fake: scaffold gap size wrong estimation (local) 21499 22616 14402 13285 CM091761.1 scf7180000184158 99.91 True translocation, scaffold gap is present 8025931 8027805 14423 16297 CM091767.1 scf7180000184158 100.0 True translocation, scaffold gap is present 26257 27913 18004 16348 CM091761.1 scf7180000184158 100.0 True translocation 3349138 3351862 18005 20729 CM091753.1 scf7180000184158 99.74 True fake: scaffold gap size wrong estimation (local) 3352407 3353105 21694 22392 CM091753.1 scf7180000184158 99.71 True fake: not a misassembly (possible transposable element) 8028344 8028985 23444 24085 CM091767.1 scf7180000184158 99.07 True fake: not a misassembly (possible transposable element) 3354669 3451797 24610 121628 CM091753.1 scf7180000184158 99.68 True fake: not a misassembly (possible transposable element) 4054221 4054733 121629 122140 CM091754.1 scf7180000184158 99.81 True fake: not a misassembly (possible transposable element) 3451080 3516118 122161 186914 CM091753.1 scf7180000184158 99.35 True relocation, scaffold gap is present, inconsistency = -173593 3342596 3343705 186985 188094 CM091753.1 scf7180000184158 99.73 True local misassembly 3347331 3349320 188095 190084 CM091753.1 scf7180000184158 99.95 True CONTIG scf7180000184158 190084 misassembled 1811981 1813727 1 1766 CM091764.1 scf7180000184159 99.48 True fake: scaffold gap size wrong estimation (local) 1813655 1815091 4468 5912 CM091764.1 scf7180000184159 95.78 True local misassembly 1816342 1817697 6112 7508 CM091764.1 scf7180000184159 98.19 True fake: scaffold gap size wrong estimation (local) 1819155 1819789 11171 11805 CM091764.1 scf7180000184159 99.53 True fake: scaffold gap size wrong estimation (local) 1820532 1822907 12902 15276 CM091764.1 scf7180000184159 99.96 True fake: scaffold gap size wrong estimation (local) 1823960 1824794 15722 16556 CM091764.1 scf7180000184159 96.77 True fake: scaffold gap size wrong estimation (local) 1825563 1827191 18242 19886 CM091764.1 scf7180000184159 96.59 True translocation, scaffold gap is present 35232 39238 19938 24102 CM091753.1 scf7180000184159 96.43 True fake: scaffold gap size wrong estimation (local) 39568 41214 24178 25825 CM091753.1 scf7180000184159 99.88 True fake: scaffold gap size wrong estimation (local) 41417 42034 26216 26833 CM091753.1 scf7180000184159 100.0 True local misassembly 42330 43282 26834 27786 CM091753.1 scf7180000184159 97.27 True fake: scaffold gap size wrong estimation (local) 44535 45244 28435 29144 CM091753.1 scf7180000184159 100.0 True translocation, scaffold gap is present 7588977 7633002 73254 29165 CM091760.1 scf7180000184159 99.56 True indel: indel (> 5bp) 7543271 7588941 118853 73280 CM091760.1 scf7180000184159 98.72 True indel: indel (> 5bp) 7533641 7543052 128533 119037 CM091760.1 scf7180000184159 99.24 True local misassembly 7463771 7533519 198433 128534 CM091760.1 scf7180000184159 98.99 True indel: indel (<= 5bp) 7448488 7463715 213334 198490 CM091760.1 scf7180000184159 96.72 True fake: scaffold gap size wrong estimation (local) 7345631 7448275 316256 213555 CM091760.1 scf7180000184159 99.24 True CONTIG scf7180000184159 316259 misassembled 146460 158221 13399 1789 CM091764.1 scf7180000184160 98.63 True fake: scaffold gap size wrong estimation (local) 140819 144782 18713 14715 CM091764.1 scf7180000184160 97.73 True relocation, scaffold gap is present, inconsistency = 416571 562287 563029 19647 20389 CM091764.1 scf7180000184160 99.87 True relocation, scaffold gap is present, inconsistency = 1158101 1721483 1722246 20742 21505 CM091764.1 scf7180000184160 99.35 True relocation, scaffold gap is present, inconsistency = 1585871 131842 135590 25312 21527 CM091764.1 scf7180000184160 96.47 True relocation, scaffold gap is present, inconsistency = 433749 570688 574183 26661 30157 CM091764.1 scf7180000184160 99.4 True fake: scaffold gap size wrong estimation (local) 573788 586566 30511 43767 CM091764.1 scf7180000184160 96.09 True relocation, scaffold gap is present, inconsistency = 428442 141738 142767 47376 46346 CM091764.1 scf7180000184160 99.9 True fake: scaffold gap size wrong estimation (local) 139894 140561 49293 48631 CM091764.1 scf7180000184160 99.05 True CONTIG scf7180000184160 49296 misassembled 14168247 14177969 9746 2 CM091758.1 scf7180000184161 98.83 True translocation 4287268 4293317 15801 9747 CM091753.1 scf7180000184161 99.54 True fake: scaffold gap size wrong estimation (local) 4249676 4287080 53620 16000 CM091753.1 scf7180000184161 97.9 True fake: scaffold gap size wrong estimation (local) 4227372 4248102 75523 54811 CM091753.1 scf7180000184161 99.4 True local misassembly 4177406 4227303 125590 75701 CM091753.1 scf7180000184161 99.78 True fake: scaffold gap size wrong estimation (local) 4162292 4176575 140673 126291 CM091753.1 scf7180000184161 99.24 True fake: scaffold gap size wrong estimation (local) 4143552 4162103 159304 140752 CM091753.1 scf7180000184161 99.97 True translocation 4471523 4473419 159305 161202 CM091758.1 scf7180000184161 99.9 True CONTIG scf7180000184161 161202 misassembled 436948 437881 934 1 CM091753.1 scf7180000184162 100.0 True fake: scaffold gap size wrong estimation (local) 416900 434454 19640 2089 CM091753.1 scf7180000184162 99.87 True fake: scaffold gap size wrong estimation (local) 350309 416481 85337 19892 CM091753.1 scf7180000184162 98.08 True fake: scaffold gap size wrong estimation (local) 345192 350157 90568 85438 CM091753.1 scf7180000184162 96.24 True fake: scaffold gap size wrong estimation (local) 312282 343985 122353 90870 CM091753.1 scf7180000184162 99.04 True fake: scaffold gap size wrong estimation (local) 302574 311324 131650 122865 CM091753.1 scf7180000184162 99.1 True fake: scaffold gap size wrong estimation (local) 301044 302023 132821 131842 CM091753.1 scf7180000184162 99.9 True indel: indel (> 5bp) 299919 301034 133937 132822 CM091753.1 scf7180000184162 98.21 True local misassembly 299048 299609 134499 133938 CM091753.1 scf7180000184162 100.0 True indel: indel (<= 5bp) 298365 299045 135180 134500 CM091753.1 scf7180000184162 100.0 True indel: indel (<= 5bp) 295841 298363 137703 135181 CM091753.1 scf7180000184162 98.1 True indel: indel (> 5bp) 295111 295757 138350 137704 CM091753.1 scf7180000184162 99.85 True translocation, scaffold gap is present 3159111 3159950 138547 139386 CM091752.1 scf7180000184162 99.76 True fake: scaffold gap size wrong estimation (local) 3159951 3161128 139995 141172 CM091752.1 scf7180000184162 99.66 True fake: scaffold gap size wrong estimation (local) 3161129 3163103 141193 143167 CM091752.1 scf7180000184162 99.8 True indel: indel (> 5bp) 3163124 3164802 143168 144846 CM091752.1 scf7180000184162 98.69 True fake: scaffold gap size wrong estimation (local) 3164803 3167528 145225 147950 CM091752.1 scf7180000184162 99.89 True indel: indel (<= 5bp) 3167530 3168292 147951 148713 CM091752.1 scf7180000184162 100.0 True fake: scaffold gap size wrong estimation (local) 3168293 3169739 148729 150175 CM091752.1 scf7180000184162 99.52 True fake: scaffold gap size wrong estimation (local) 3169852 3170872 150384 151404 CM091752.1 scf7180000184162 100.0 True CONTIG scf7180000184162 151404 misassembled CONTIG scf7180000184163 871154 unaligned 238676 314791 77004 102 CM091751.1 scf7180000184164 99.23 True fake: scaffold gap size wrong estimation (local) 237275 238133 78403 77545 CM091751.1 scf7180000184164 99.77 True fake: scaffold gap size wrong estimation (local) 234154 237274 81877 78757 CM091751.1 scf7180000184164 99.78 True indel: indel (> 5bp) 232086 234144 83936 81878 CM091751.1 scf7180000184164 99.85 True indel: indel (<= 5bp) 228382 232085 87642 83939 CM091751.1 scf7180000184164 99.76 True fake: scaffold gap size wrong estimation (local) 227526 228381 88515 87660 CM091751.1 scf7180000184164 100.0 True indel: indel (<= 5bp) 226839 227389 89200 88650 CM091751.1 scf7180000184164 99.82 True fake: scaffold gap size wrong estimation (local) 226039 226697 90012 89354 CM091751.1 scf7180000184164 99.85 True fake: scaffold gap size wrong estimation (local) 224786 225657 91522 90651 CM091751.1 scf7180000184164 99.89 True indel: indel (> 5bp) 220567 224375 95734 91926 CM091751.1 scf7180000184164 100.0 True indel: indel (<= 5bp) 219972 220566 96330 95736 CM091751.1 scf7180000184164 99.83 True local misassembly 217985 219149 98310 97146 CM091751.1 scf7180000184164 100.0 True indel: indel (> 5bp) 217146 217943 99143 98346 CM091751.1 scf7180000184164 99.87 True indel: indel (> 5bp) 215988 216734 100293 99547 CM091751.1 scf7180000184164 100.0 True indel: indel (<= 5bp) 215063 215986 101217 100294 CM091751.1 scf7180000184164 99.89 True fake: scaffold gap size wrong estimation (local) 214065 214608 103086 102543 CM091751.1 scf7180000184164 100.0 True indel: indel (> 5bp) 213047 214052 104092 103087 CM091751.1 scf7180000184164 100.0 True fake: not a misassembly (possible transposable element) 1655340 1657167 105925 104099 CM091765.1 scf7180000184164 99.29 True fake: not a misassembly (possible transposable element) 152526 212242 165437 105946 CM091751.1 scf7180000184164 98.98 True fake: scaffold gap size wrong estimation (local) 137997 152790 180593 165803 CM091751.1 scf7180000184164 99.76 True fake: scaffold gap size wrong estimation (local) 137030 137567 181389 180852 CM091751.1 scf7180000184164 98.33 True fake: scaffold gap size wrong estimation (local) 133802 137029 184628 181401 CM091751.1 scf7180000184164 99.26 True indel: indel (> 5bp) 127272 133790 191147 184629 CM091751.1 scf7180000184164 99.89 True indel: indel (<= 5bp) 120898 127270 197520 191148 CM091751.1 scf7180000184164 100.0 True indel: indel (> 5bp) 119535 120897 198899 197537 CM091751.1 scf7180000184164 100.0 True local misassembly 111777 113919 201042 198900 CM091751.1 scf7180000184164 96.83 True local misassembly 110199 111493 202337 201043 CM091751.1 scf7180000184164 99.92 True indel: indel (<= 5bp) 106291 110148 206243 202386 CM091751.1 scf7180000184164 99.92 True indel: indel (<= 5bp) 104363 106290 208172 206245 CM091751.1 scf7180000184164 98.96 True fake: scaffold gap size wrong estimation (local) 102677 103186 209310 208801 CM091751.1 scf7180000184164 95.88 True local misassembly 101018 102375 210668 209311 CM091751.1 scf7180000184164 99.93 True indel: stretch of mismatches 96927 100949 214759 210737 CM091751.1 scf7180000184164 99.98 True indel: indel (<= 5bp) 93831 96925 217854 214760 CM091751.1 scf7180000184164 99.97 True fake: scaffold gap size wrong estimation (local) 91672 93830 220044 217886 CM091751.1 scf7180000184164 98.84 True indel: indel (<= 5bp) 84857 91667 226855 220045 CM091751.1 scf7180000184164 99.96 True fake: scaffold gap size wrong estimation (local) 77834 84617 233859 227062 CM091751.1 scf7180000184164 99.81 True fake: scaffold gap size wrong estimation (local) 76672 77526 235179 234331 CM091751.1 scf7180000184164 99.06 True CONTIG scf7180000184164 235252 correct 10137816 10139385 38105 39675 CM091765.1 scf7180000184165 99.9 True relocation, inconsistency = 11963 10115581 10125852 49950 39676 CM091765.1 scf7180000184165 99.85 True relocation, scaffold gap is present, inconsistency = 14246 10072119 10094983 56302 78889 CM091765.1 scf7180000184165 98.66 True fake: scaffold gap size wrong estimation (local) 10095974 10098605 79486 82113 CM091765.1 scf7180000184165 99.77 True relocation, scaffold gap is present, inconsistency = 29060 10044145 10066590 104479 82437 CM091765.1 scf7180000184165 97.98 True fake: scaffold gap size wrong estimation (local) 10041364 10044021 107225 104563 CM091765.1 scf7180000184165 99.92 True local misassembly 9997639 10040415 151115 108612 CM091765.1 scf7180000184165 99.26 True fake: scaffold gap size wrong estimation (local) 9990762 9996896 157853 151719 CM091765.1 scf7180000184165 99.92 True fake: scaffold gap size wrong estimation (local) 9988694 9990464 159801 158031 CM091765.1 scf7180000184165 99.04 True fake: scaffold gap size wrong estimation (local) 9985375 9988163 162721 159932 CM091765.1 scf7180000184165 99.89 True fake: scaffold gap size wrong estimation (local) 9966255 9985140 181443 162905 CM091765.1 scf7180000184165 98.06 True fake: scaffold gap size wrong estimation (local) 9960650 9966106 186978 181534 CM091765.1 scf7180000184165 99.67 True CONTIG scf7180000184165 186978 misassembled 1980034 1982027 6031 3987 CM091764.1 scf7180000184166 99.0 True fake: scaffold gap size wrong estimation (local) 1978168 1979368 7474 6276 CM091764.1 scf7180000184166 99.33 True local misassembly 1979332 1979970 8137 7499 CM091764.1 scf7180000184166 99.69 True fake: scaffold gap size wrong estimation (local) 1977404 1978002 9187 8589 CM091764.1 scf7180000184166 100.0 True fake: scaffold gap size wrong estimation (local) 1973550 1975220 10878 9208 CM091764.1 scf7180000184166 99.4 True local misassembly 1975339 1976011 11587 10915 CM091764.1 scf7180000184166 99.26 True fake: scaffold gap size wrong estimation (local) 1968178 1973366 16853 11637 CM091764.1 scf7180000184166 99.04 True fake: scaffold gap size wrong estimation (local) 1961156 1963602 22927 20483 CM091764.1 scf7180000184166 99.18 True fake: scaffold gap size wrong estimation (local) 1957773 1958645 25336 24464 CM091764.1 scf7180000184166 99.66 True indel: indel (<= 5bp) 1956852 1957770 26255 25337 CM091764.1 scf7180000184166 99.24 True fake: not a misassembly (possible transposable element) 15148428 15149805 26600 27977 CM091757.1 scf7180000184166 100.0 True fake: not a misassembly (possible transposable element) 1953292 1954019 28706 27979 CM091764.1 scf7180000184166 98.76 True local misassembly 1955175 1956452 30094 28816 CM091764.1 scf7180000184166 98.83 True translocation, scaffold gap is present 11032004 11036989 35592 30599 CM091765.1 scf7180000184166 99.44 True fake: scaffold gap size wrong estimation (local) 11030294 11031380 37225 36139 CM091765.1 scf7180000184166 99.91 True translocation, scaffold gap is present 520755 521748 39895 40888 CM091755.1 scf7180000184166 99.09 True fake: scaffold gap size wrong estimation (local) 522105 523385 41287 42567 CM091755.1 scf7180000184166 99.22 True local misassembly 523629 527778 42568 46717 CM091755.1 scf7180000184166 99.45 True fake: scaffold gap size wrong estimation (local) 528687 586404 47362 104937 CM091755.1 scf7180000184166 99.87 True fake: scaffold gap size wrong estimation (local) 586610 590159 105169 108719 CM091755.1 scf7180000184166 99.75 True fake: scaffold gap size wrong estimation (local) 590823 597545 109810 116525 CM091755.1 scf7180000184166 99.82 True fake: scaffold gap size wrong estimation (local) 598565 599403 117288 118153 CM091755.1 scf7180000184166 99.37 True CONTIG scf7180000184166 118612 misassembled 959571 962063 1 2535 CM091752.1 scf7180000184167 98.25 True fake: scaffold gap size wrong estimation (local) 962504 977857 2681 18039 CM091752.1 scf7180000184167 99.58 True fake: scaffold gap size wrong estimation (local) 979310 994864 19026 34515 CM091752.1 scf7180000184167 99.1 True fake: scaffold gap size wrong estimation (local) 996230 997419 34929 36118 CM091752.1 scf7180000184167 99.58 True indel: indel (<= 5bp) 997584 998185 36285 36886 CM091752.1 scf7180000184167 98.67 True fake: scaffold gap size wrong estimation (local) 999080 1051570 37459 89635 CM091752.1 scf7180000184167 97.38 True local misassembly 1054896 1055660 90592 91356 CM091752.1 scf7180000184167 100.0 True fake: scaffold gap size wrong estimation (local) 1056479 1057730 92368 93619 CM091752.1 scf7180000184167 99.76 True fake: scaffold gap size wrong estimation (local) 1058563 1059796 94052 95285 CM091752.1 scf7180000184167 99.84 True indel: indel (<= 5bp) 1059798 1060334 95286 95822 CM091752.1 scf7180000184167 98.7 True indel: indel (<= 5bp) 1060478 1061008 95971 96501 CM091752.1 scf7180000184167 99.81 True indel: indel (<= 5bp) 1061010 1061699 96502 97191 CM091752.1 scf7180000184167 99.71 True indel: indel (<= 5bp) 1061700 1062926 97193 98419 CM091752.1 scf7180000184167 98.78 True fake: scaffold gap size wrong estimation (local) 1064372 1065606 99162 100396 CM091752.1 scf7180000184167 100.0 True indel: indel (<= 5bp) 1065608 1066264 100397 101053 CM091752.1 scf7180000184167 99.85 True indel: indel (<= 5bp) 1066267 1068099 101054 102886 CM091752.1 scf7180000184167 99.56 True indel: indel (<= 5bp) 1068100 1070659 102888 105447 CM091752.1 scf7180000184167 99.3 True fake: scaffold gap size wrong estimation (local) 1071017 1071829 106075 106887 CM091752.1 scf7180000184167 99.63 True indel: indel (<= 5bp) 1071913 1072545 106972 107604 CM091752.1 scf7180000184167 98.89 True local misassembly 1074406 1076516 108582 110692 CM091752.1 scf7180000184167 99.24 True local misassembly 1078338 1080012 111142 112816 CM091752.1 scf7180000184167 99.22 True indel: indel (> 5bp) 1080025 1081018 112817 113810 CM091752.1 scf7180000184167 99.5 True fake: scaffold gap size wrong estimation (local) 1081117 1082862 114017 115762 CM091752.1 scf7180000184167 99.6 True local misassembly 1083280 1084244 115763 116727 CM091752.1 scf7180000184167 99.59 True indel: indel (<= 5bp) 1084430 1085194 116912 117676 CM091752.1 scf7180000184167 99.61 True local misassembly 1086027 1087343 118514 119830 CM091752.1 scf7180000184167 99.7 True indel: indel (<= 5bp) 1087344 1088102 119832 120590 CM091752.1 scf7180000184167 99.74 True indel: indel (> 5bp) 1088127 1088633 120624 121130 CM091752.1 scf7180000184167 99.41 True fake: scaffold gap size wrong estimation (local) 1089211 1089929 122029 122747 CM091752.1 scf7180000184167 99.3 True fake: scaffold gap size wrong estimation (local) 1090152 1091959 122990 124797 CM091752.1 scf7180000184167 99.17 True fake: scaffold gap size wrong estimation (local) 1092033 1092821 124869 125657 CM091752.1 scf7180000184167 99.11 True local misassembly 1093667 1094811 126281 127425 CM091752.1 scf7180000184167 99.3 True indel: indel (<= 5bp) 1095098 1095644 127711 128257 CM091752.1 scf7180000184167 99.63 True indel: indel (<= 5bp) 1095973 1096700 128588 129315 CM091752.1 scf7180000184167 99.18 True local misassembly 1097841 1098640 130149 130948 CM091752.1 scf7180000184167 99.75 True indel: indel (<= 5bp) 1098686 1099355 130996 131665 CM091752.1 scf7180000184167 98.96 True indel: indel (<= 5bp) 1099364 1099949 131676 132261 CM091752.1 scf7180000184167 99.66 True indel: indel (<= 5bp) 1099950 1100901 132263 133214 CM091752.1 scf7180000184167 99.58 True local misassembly 1101515 1102449 133830 134764 CM091752.1 scf7180000184167 99.57 True indel: indel (<= 5bp) 1102765 1104012 135079 136326 CM091752.1 scf7180000184167 99.44 True fake: scaffold gap size wrong estimation (local) 1104013 1104715 136342 137044 CM091752.1 scf7180000184167 99.0 True indel: indel (<= 5bp) 1104716 1105282 137046 137612 CM091752.1 scf7180000184167 99.29 True indel: stretch of mismatches 1105305 1106733 137635 139063 CM091752.1 scf7180000184167 99.58 True local misassembly 1108417 1109807 139582 140972 CM091752.1 scf7180000184167 99.5 True indel: indel (<= 5bp) 1109808 1111805 140974 142971 CM091752.1 scf7180000184167 99.6 True indel: indel (<= 5bp) 1111806 1112328 142975 143497 CM091752.1 scf7180000184167 98.09 True indel: stretch of mismatches 1112340 1113831 143509 145000 CM091752.1 scf7180000184167 99.33 True local misassembly 1115777 1116856 145943 147022 CM091752.1 scf7180000184167 98.52 True CONTIG scf7180000184167 147894 correct 9042661 9092626 27 50368 CM091759.1 scf7180000184168 98.88 True fake: scaffold gap size wrong estimation (local) 9092739 9096426 50454 54143 CM091759.1 scf7180000184168 99.78 True fake: scaffold gap size wrong estimation (local) 9096790 9147047 54596 104758 CM091759.1 scf7180000184168 98.95 True fake: scaffold gap size wrong estimation (local) 9148342 9159026 105733 116411 CM091759.1 scf7180000184168 99.21 True fake: scaffold gap size wrong estimation (local) 9159195 9192047 116506 149360 CM091759.1 scf7180000184168 99.73 True fake: scaffold gap size wrong estimation (local) 9192322 9206495 149669 163561 CM091759.1 scf7180000184168 95.12 True local misassembly 9208376 9239028 163562 194047 CM091759.1 scf7180000184168 99.26 True fake: scaffold gap size wrong estimation (local) 9239896 9256797 194285 211186 CM091759.1 scf7180000184168 99.42 True indel: indel (> 5bp) 9256883 9486431 211264 440630 CM091759.1 scf7180000184168 99.51 True fake: scaffold gap size wrong estimation (local) 9486729 9679573 440739 633501 CM091759.1 scf7180000184168 99.37 True indel: indel (<= 5bp) 9679677 9692163 633603 646030 CM091759.1 scf7180000184168 98.7 True fake: scaffold gap size wrong estimation (local) 9692473 9850319 646200 804598 CM091759.1 scf7180000184168 99.18 True fake: not a misassembly (possible transposable element) 5960955 5962441 804619 806105 CM091765.1 scf7180000184168 99.93 True fake: not a misassembly (possible transposable element) 9851285 9853034 806106 807859 CM091759.1 scf7180000184168 99.2 True local misassembly 9850030 9851214 807880 809063 CM091759.1 scf7180000184168 99.32 True fake: scaffold gap size wrong estimation (local) 9852879 9886922 809084 843045 CM091759.1 scf7180000184168 99.5 True indel: indel (> 5bp) 9887086 10033704 843202 989693 CM091759.1 scf7180000184168 99.23 True indel: indel (> 5bp) 10033827 10168685 989782 1124466 CM091759.1 scf7180000184168 99.45 True fake: not a misassembly (possible transposable element) 2580964 2581855 1125971 1125081 CM091757.1 scf7180000184168 99.33 True fake: not a misassembly (possible transposable element) 10168761 10306669 1126008 1264044 CM091759.1 scf7180000184168 99.47 True indel: indel (> 5bp) 10306755 10433286 1264093 1390506 CM091759.1 scf7180000184168 99.52 True fake: scaffold gap size wrong estimation (local) 10433910 10572536 1391006 1529584 CM091759.1 scf7180000184168 99.38 True translocation 7878431 7879757 1529585 1530911 CM091760.1 scf7180000184168 99.78 True CONTIG scf7180000184168 1530911 misassembled 9275550 9329969 1 54101 CM091756.1 scf7180000184169 98.96 True fake: scaffold gap size wrong estimation (local) 9330200 9333053 54335 57200 CM091756.1 scf7180000184169 99.16 True fake: scaffold gap size wrong estimation (local) 9333237 9389294 57295 112443 CM091756.1 scf7180000184169 97.5 True local misassembly 9389962 9399478 113152 122677 CM091756.1 scf7180000184169 98.99 True fake: scaffold gap size wrong estimation (local) 9399887 9424262 123113 147457 CM091756.1 scf7180000184169 99.28 True fake: not a misassembly (possible transposable element) 4683690 4684785 148573 147478 CM091763.1 scf7180000184169 100.0 True fake: not a misassembly (possible transposable element) 9424469 9441891 148766 166142 CM091756.1 scf7180000184169 98.46 True fake: scaffold gap size wrong estimation (local) 9442321 9443290 166308 167277 CM091756.1 scf7180000184169 100.0 True local misassembly 9443653 9444910 167278 168535 CM091756.1 scf7180000184169 99.6 True indel: indel (<= 5bp) 9444912 9447406 168536 171030 CM091756.1 scf7180000184169 99.4 True fake: scaffold gap size wrong estimation (local) 9447541 9452770 171151 176385 CM091756.1 scf7180000184169 99.54 True fake: scaffold gap size wrong estimation (local) 9452967 9466305 176568 189872 CM091756.1 scf7180000184169 99.07 True fake: scaffold gap size wrong estimation (local) 9466409 9483348 190002 206902 CM091756.1 scf7180000184169 98.71 True fake: scaffold gap size wrong estimation (local) 9484223 9519708 207669 243098 CM091756.1 scf7180000184169 98.83 True local misassembly 9519939 9553146 243140 276109 CM091756.1 scf7180000184169 97.66 True fake: scaffold gap size wrong estimation (local) 9553366 9610630 276270 332824 CM091756.1 scf7180000184169 97.97 True fake: scaffold gap size wrong estimation (local) 9610889 9640514 333122 361815 CM091756.1 scf7180000184169 96.24 True indel: indel (<= 5bp) 9640566 9670488 361866 392009 CM091756.1 scf7180000184169 97.97 True fake: scaffold gap size wrong estimation (local) 9670668 9692691 392181 414056 CM091756.1 scf7180000184169 98.28 True fake: scaffold gap size wrong estimation (local) 9692839 9768542 414162 489947 CM091756.1 scf7180000184169 98.14 True fake: scaffold gap size wrong estimation (local) 9769061 9777398 490813 499156 CM091756.1 scf7180000184169 99.51 True indel: indel (> 5bp) 9777507 9812076 499200 533489 CM091756.1 scf7180000184169 97.27 True fake: scaffold gap size wrong estimation (local) 9812883 9819142 533817 540074 CM091756.1 scf7180000184169 98.06 True indel: indel (<= 5bp) 9819205 9820637 540142 541580 CM091756.1 scf7180000184169 98.96 True fake: scaffold gap size wrong estimation (local) 9821402 9842754 541936 563419 CM091756.1 scf7180000184169 98.94 True fake: scaffold gap size wrong estimation (local) 9842927 9844529 563768 565370 CM091756.1 scf7180000184169 98.81 True local misassembly 9845839 9846573 565371 566105 CM091756.1 scf7180000184169 97.01 True indel: indel (<= 5bp) 9846574 9847137 566107 566670 CM091756.1 scf7180000184169 100.0 True fake: not a misassembly (possible transposable element) 9873095 9874712 566748 568367 CM091756.1 scf7180000184169 99.44 True fake: not a misassembly (possible transposable element) 9851291 9851845 570623 571176 CM091756.1 scf7180000184169 98.56 True fake: scaffold gap size wrong estimation (local) 9852021 9853915 571346 573240 CM091756.1 scf7180000184169 99.42 True fake: scaffold gap size wrong estimation (local) 9855798 9857031 574574 575805 CM091756.1 scf7180000184169 98.63 True fake: scaffold gap size wrong estimation (local) 9857836 9858817 576903 577887 CM091756.1 scf7180000184169 99.39 True CONTIG scf7180000184169 577887 correct 14165640 14167492 1908 21 CM091758.1 scf7180000184170 97.6 True fake: scaffold gap size wrong estimation (local) 14163007 14165207 4666 2466 CM091758.1 scf7180000184170 99.32 True fake: scaffold gap size wrong estimation (local) 14160973 14161845 6855 5983 CM091758.1 scf7180000184170 96.79 True local misassembly 14160013 14160766 7609 6856 CM091758.1 scf7180000184170 99.07 True indel: indel (<= 5bp) 14159474 14160011 8147 7610 CM091758.1 scf7180000184170 98.33 True fake: scaffold gap size wrong estimation (local) 14154616 14158856 12961 8719 CM091758.1 scf7180000184170 98.3 True fake: scaffold gap size wrong estimation (local) 14152979 14154375 14544 13148 CM091758.1 scf7180000184170 99.21 True fake: scaffold gap size wrong estimation (local) 14148118 14151151 19554 16519 CM091758.1 scf7180000184170 99.11 True fake: scaffold gap size wrong estimation (local) 14146190 14147996 21476 19659 CM091758.1 scf7180000184170 98.02 True fake: scaffold gap size wrong estimation (local) 14143228 14144285 23950 22893 CM091758.1 scf7180000184170 100.0 True indel: indel (<= 5bp) 14142636 14143227 24543 23952 CM091758.1 scf7180000184170 98.14 True local misassembly 14141046 14142050 26142 25138 CM091758.1 scf7180000184170 99.9 True local misassembly 14138789 14140343 28399 26845 CM091758.1 scf7180000184170 98.39 True fake: scaffold gap size wrong estimation (local) 14137207 14137872 29894 29229 CM091758.1 scf7180000184170 99.7 True fake: scaffold gap size wrong estimation (local) 14130259 14135408 35902 30807 CM091758.1 scf7180000184170 96.5 True fake: scaffold gap size wrong estimation (local) 14128800 14129737 37019 36081 CM091758.1 scf7180000184170 98.2 True fake: scaffold gap size wrong estimation (local) 14126212 14127641 38881 37449 CM091758.1 scf7180000184170 99.44 True fake: scaffold gap size wrong estimation (local) 14125116 14126048 39983 39020 CM091758.1 scf7180000184170 97.47 True fake: scaffold gap size wrong estimation (local) 14124177 14124699 40872 40362 CM091758.1 scf7180000184170 96.94 True fake: scaffold gap size wrong estimation (local) 14120327 14123055 44501 41779 CM091758.1 scf7180000184170 99.04 True fake: scaffold gap size wrong estimation (local) 14118235 14119499 46542 45278 CM091758.1 scf7180000184170 99.13 True fake: scaffold gap size wrong estimation (local) 14113496 14117813 51473 47138 CM091758.1 scf7180000184170 99.15 True fake: scaffold gap size wrong estimation (local) 14111126 14113348 53805 51559 CM091758.1 scf7180000184170 97.45 True fake: scaffold gap size wrong estimation (local) 14108728 14110255 56121 54594 CM091758.1 scf7180000184170 99.02 True local misassembly 14104600 14107956 59602 56246 CM091758.1 scf7180000184170 99.4 True indel: indel (<= 5bp) 14103921 14104599 60282 59604 CM091758.1 scf7180000184170 99.71 True indel: indel (<= 5bp) 14102959 14103919 61243 60283 CM091758.1 scf7180000184170 99.79 True indel: indel (> 5bp) 14101936 14102580 62182 61538 CM091758.1 scf7180000184170 99.84 True fake: scaffold gap size wrong estimation (local) 14096437 14100995 67699 63128 CM091758.1 scf7180000184170 98.86 True fake: scaffold gap size wrong estimation (local) 14093464 14095925 70576 68114 CM091758.1 scf7180000184170 99.47 True fake: scaffold gap size wrong estimation (local) 14084184 14093251 79567 70773 CM091758.1 scf7180000184170 95.59 True fake: scaffold gap size wrong estimation (local) 14079552 14083472 83798 79878 CM091758.1 scf7180000184170 99.69 True indel: indel (<= 5bp) 14077412 14079549 85936 83799 CM091758.1 scf7180000184170 99.58 True indel: indel (> 5bp) 14075702 14077333 87654 86023 CM091758.1 scf7180000184170 99.26 True fake: scaffold gap size wrong estimation (local) 14059397 14075610 103931 87735 CM091758.1 scf7180000184170 97.34 True indel: indel (<= 5bp) 14057281 14059373 106053 103960 CM091758.1 scf7180000184170 99.09 True fake: scaffold gap size wrong estimation (local) 14054780 14057075 108501 106206 CM091758.1 scf7180000184170 99.74 True indel: indel (<= 5bp) 14053270 14054778 110010 108502 CM091758.1 scf7180000184170 99.34 True local misassembly 14052180 14052789 110911 110302 CM091758.1 scf7180000184170 99.34 True indel: indel (> 5bp) 14050852 14052173 112233 110912 CM091758.1 scf7180000184170 99.7 True indel: indel (<= 5bp) 14047448 14050848 115634 112234 CM091758.1 scf7180000184170 99.26 True local misassembly 14042706 14043736 116665 115635 CM091758.1 scf7180000184170 99.61 True indel: indel (> 5bp) 14040967 14042705 118411 116673 CM091758.1 scf7180000184170 99.65 True indel: indel (<= 5bp) 14040353 14040966 119026 118413 CM091758.1 scf7180000184170 99.51 True fake: scaffold gap size wrong estimation (local) 14036229 14039225 123140 120090 CM091758.1 scf7180000184170 97.87 True local misassembly 14034580 14035690 124497 123371 CM091758.1 scf7180000184170 98.44 True fake: scaffold gap size wrong estimation (local) 14033219 14034337 125806 124688 CM091758.1 scf7180000184170 99.91 True fake: scaffold gap size wrong estimation (local) 14030892 14032871 127985 126030 CM091758.1 scf7180000184170 97.39 True fake: scaffold gap size wrong estimation (local) 14029705 14030344 129103 128464 CM091758.1 scf7180000184170 98.12 True fake: scaffold gap size wrong estimation (local) 14028578 14029154 130414 129838 CM091758.1 scf7180000184170 99.83 True indel: indel (> 5bp) 14024725 14028520 134306 130502 CM091758.1 scf7180000184170 99.19 True fake: scaffold gap size wrong estimation (local) 14017790 14023655 141206 135340 CM091758.1 scf7180000184170 98.54 True fake: scaffold gap size wrong estimation (local) 14009540 14016779 148934 141687 CM091758.1 scf7180000184170 99.23 True fake: scaffold gap size wrong estimation (local) 13992053 14008795 166373 149814 CM091758.1 scf7180000184170 97.53 True fake: scaffold gap size wrong estimation (local) 13985677 13991440 172399 166656 CM091758.1 scf7180000184170 98.12 True fake: scaffold gap size wrong estimation (local) 13971715 13978728 180932 173937 CM091758.1 scf7180000184170 98.83 True fake: scaffold gap size wrong estimation (local) 13963742 13971475 188815 181088 CM091758.1 scf7180000184170 99.04 True CONTIG scf7180000184170 188815 correct 9431304 9437267 448 6541 CM091767.1 scf7180000184171 98.05 True translocation, scaffold gap is present 1553376 1555714 7219 9565 CM091764.1 scf7180000184171 97.04 True fake: scaffold gap size wrong estimation (local) 1555940 1557791 9791 11643 CM091764.1 scf7180000184171 99.57 True fake: scaffold gap size wrong estimation (local) 1557738 1559205 12275 13738 CM091764.1 scf7180000184171 99.37 True fake: scaffold gap size wrong estimation (local) 1561085 1561977 15550 16442 CM091764.1 scf7180000184171 99.66 True fake: scaffold gap size wrong estimation (local) 1562517 1564233 17257 18982 CM091764.1 scf7180000184171 99.82 True fake: scaffold gap size wrong estimation (local) 1565272 1567309 20222 22258 CM091764.1 scf7180000184171 99.75 True translocation, scaffold gap is present 9163927 9167662 23658 27264 CM091767.1 scf7180000184171 95.45 True fake: scaffold gap size wrong estimation (local) 9167807 9171430 27359 30969 CM091767.1 scf7180000184171 98.51 True translocation, scaffold gap is present 10839963 10840527 34131 34691 CM091765.1 scf7180000184171 96.99 True translocation, scaffold gap is present 724846 725350 34761 35265 CM091753.1 scf7180000184171 99.21 True fake: scaffold gap size wrong estimation (local) 725790 726439 35818 36467 CM091753.1 scf7180000184171 98.46 True fake: scaffold gap size wrong estimation (local) 726932 783944 37197 94204 CM091753.1 scf7180000184171 99.96 True fake: scaffold gap size wrong estimation (local) 784275 809289 94636 119650 CM091753.1 scf7180000184171 99.96 True fake: scaffold gap size wrong estimation (local) 810181 813468 120019 123306 CM091753.1 scf7180000184171 100.0 True local misassembly 815119 815708 123307 123896 CM091753.1 scf7180000184171 96.61 True indel: indel (<= 5bp) 815709 819472 123898 127661 CM091753.1 scf7180000184171 99.97 True local misassembly 819616 824408 127662 132454 CM091753.1 scf7180000184171 99.54 True local misassembly 826073 827246 132455 133628 CM091753.1 scf7180000184171 98.13 True fake: scaffold gap size wrong estimation (local) 827589 838570 133828 144801 CM091753.1 scf7180000184171 99.84 True fake: scaffold gap size wrong estimation (local) 838663 841365 144903 147605 CM091753.1 scf7180000184171 99.82 True fake: scaffold gap size wrong estimation (local) 842075 844618 148017 150560 CM091753.1 scf7180000184171 99.92 True fake: scaffold gap size wrong estimation (local) 845858 855737 151312 161197 CM091753.1 scf7180000184171 99.87 True CONTIG scf7180000184171 162317 misassembled 1043833 1052512 1 8671 CM091765.1 scf7180000184172 99.36 True local misassembly 1052857 1053429 8855 9427 CM091765.1 scf7180000184172 100.0 True local misassembly 1054450 1055149 10451 11150 CM091765.1 scf7180000184172 99.71 True indel: indel (<= 5bp) 1055343 1056180 11339 12176 CM091765.1 scf7180000184172 99.76 True fake: scaffold gap size wrong estimation (local) 1056269 1057631 12866 14228 CM091765.1 scf7180000184172 99.93 True local misassembly 1058174 1059502 14743 16071 CM091765.1 scf7180000184172 99.92 True local misassembly 1060394 1061157 16915 17678 CM091765.1 scf7180000184172 99.87 True fake: scaffold gap size wrong estimation (local) 1062407 1070389 18853 26834 CM091765.1 scf7180000184172 99.61 True indel: indel (> 5bp) 1070440 1094651 26893 51179 CM091765.1 scf7180000184172 99.19 True fake: scaffold gap size wrong estimation (local) 1094851 1174895 51356 131433 CM091765.1 scf7180000184172 99.15 True indel: indel (> 5bp) 1174947 1229764 131492 185737 CM091765.1 scf7180000184172 98.46 True fake: scaffold gap size wrong estimation (local) 1230572 1479018 186394 433959 CM091765.1 scf7180000184172 99.03 True fake: scaffold gap size wrong estimation (local) 1479252 1608914 434103 563998 CM091765.1 scf7180000184172 99.15 True fake: scaffold gap size wrong estimation (local) 1609465 1638101 564317 592904 CM091765.1 scf7180000184172 99.03 True fake: scaffold gap size wrong estimation (local) 1638203 1903280 593006 857590 CM091765.1 scf7180000184172 99.22 True translocation 6165358 6174364 866837 857591 CM091768.1 scf7180000184172 97.79 True fake: scaffold gap size wrong estimation (local) 6162425 6163345 868657 867737 CM091768.1 scf7180000184172 98.7 True fake: scaffold gap size wrong estimation (local) 6155973 6162046 875071 869123 CM091768.1 scf7180000184172 97.68 True fake: scaffold gap size wrong estimation (local) 6152063 6153371 878226 876918 CM091768.1 scf7180000184172 100.0 True CONTIG scf7180000184172 878237 misassembled 15428030 15428774 881 137 CM091757.1 scf7180000184173 99.33 True fake: scaffold gap size wrong estimation (local) 15426052 15426715 1635 974 CM091757.1 scf7180000184173 98.49 True fake: scaffold gap size wrong estimation (local) 15417633 15425521 10220 2330 CM091757.1 scf7180000184173 99.92 True fake: scaffold gap size wrong estimation (local) 15376793 15416715 50886 11038 CM091757.1 scf7180000184173 98.8 True fake: scaffold gap size wrong estimation (local) 15344340 15376538 83224 50996 CM091757.1 scf7180000184173 99.94 True fake: scaffold gap size wrong estimation (local) 15319777 15344101 107671 83336 CM091757.1 scf7180000184173 99.94 True fake: scaffold gap size wrong estimation (local) 15317148 15318391 109921 108678 CM091757.1 scf7180000184173 100.0 True fake: scaffold gap size wrong estimation (local) 15312589 15313105 113445 112929 CM091757.1 scf7180000184173 100.0 True fake: scaffold gap size wrong estimation (local) 15307990 15312410 118251 113864 CM091757.1 scf7180000184173 99.25 True fake: scaffold gap size wrong estimation (local) 15295774 15307224 129925 118474 CM091757.1 scf7180000184173 99.94 True fake: scaffold gap size wrong estimation (local) 15293967 15295516 131632 130074 CM091757.1 scf7180000184173 100.0 True fake: scaffold gap size wrong estimation (local) 15291579 15293130 133633 132082 CM091757.1 scf7180000184173 100.0 True fake: scaffold gap size wrong estimation (local) 15201000 15290728 223063 134186 CM091757.1 scf7180000184173 98.66 True fake: scaffold gap size wrong estimation (local) 15154202 15200193 269317 223346 CM091757.1 scf7180000184173 99.8 True fake: scaffold gap size wrong estimation (local) 15149700 15150509 272817 272008 CM091757.1 scf7180000184173 100.0 True fake: scaffold gap size wrong estimation (local) 15146282 15148550 276164 273896 CM091757.1 scf7180000184173 100.0 True fake: scaffold gap size wrong estimation (local) 15142810 15144046 278927 277690 CM091757.1 scf7180000184173 99.92 True fake: scaffold gap size wrong estimation (local) 15033508 15142678 388781 279025 CM091757.1 scf7180000184173 98.81 True fake: scaffold gap size wrong estimation (local) 15030077 15032391 391812 389480 CM091757.1 scf7180000184173 99.78 True fake: scaffold gap size wrong estimation (local) 14964230 15029946 457613 391913 CM091757.1 scf7180000184173 99.22 True fake: scaffold gap size wrong estimation (local) 14908490 14964082 513039 457732 CM091757.1 scf7180000184173 99.12 True translocation 923759 998295 587536 513040 CM091762.1 scf7180000184173 99.61 True fake: scaffold gap size wrong estimation (local) 915363 923394 596016 587993 CM091762.1 scf7180000184173 99.61 True fake: scaffold gap size wrong estimation (local) 909699 915278 601696 596092 CM091762.1 scf7180000184173 99.37 True indel: indel (> 5bp) 907758 909569 603555 601744 CM091762.1 scf7180000184173 99.67 True local misassembly 906715 907334 604506 603887 CM091762.1 scf7180000184173 99.68 True indel: indel (<= 5bp) 905071 906404 606152 604819 CM091762.1 scf7180000184173 99.93 True indel: indel (<= 5bp) 904334 904876 606890 606348 CM091762.1 scf7180000184173 99.45 True indel: indel (<= 5bp) 902379 903968 608847 607258 CM091762.1 scf7180000184173 99.81 True indel: indel (> 5bp) 898513 902321 612656 608848 CM091762.1 scf7180000184173 99.92 True indel: indel (<= 5bp) 897643 898512 613527 612658 CM091762.1 scf7180000184173 100.0 True indel: indel (<= 5bp) 896314 897642 614857 613529 CM091762.1 scf7180000184173 100.0 True indel: indel (<= 5bp) 894571 895855 616599 615315 CM091762.1 scf7180000184173 100.0 True indel: indel (<= 5bp) 891813 894570 619358 616601 CM091762.1 scf7180000184173 99.71 True local misassembly 886447 888108 621020 619359 CM091762.1 scf7180000184173 99.88 True indel: indel (> 5bp) 881191 886427 626257 621021 CM091762.1 scf7180000184173 99.81 True indel: indel (<= 5bp) 880063 881190 627386 626259 CM091762.1 scf7180000184173 100.0 True indel: indel (<= 5bp) 875779 880062 631671 627388 CM091762.1 scf7180000184173 99.86 True indel: indel (<= 5bp) 801348 875687 705894 631766 CM091762.1 scf7180000184173 99.37 True fake: scaffold gap size wrong estimation (local) 800297 801229 706871 705939 CM091762.1 scf7180000184173 99.57 True fake: scaffold gap size wrong estimation (local) 780500 799853 726389 707029 CM091762.1 scf7180000184173 99.79 True indel: indel (> 5bp) 645438 780421 860628 726514 CM091762.1 scf7180000184173 98.92 True indel: indel (<= 5bp) 447038 645406 1057699 860663 CM091762.1 scf7180000184173 98.63 True fake: scaffold gap size wrong estimation (local) 296406 446797 1202511 1057909 CM091762.1 scf7180000184173 95.49 True fake: scaffold gap size wrong estimation (local) 279768 296328 1219217 1202644 CM091762.1 scf7180000184173 99.29 True fake: scaffold gap size wrong estimation (local) 126545 278302 1371894 1220343 CM091762.1 scf7180000184173 99.27 True local misassembly 112149 120655 1380443 1371895 CM091762.1 scf7180000184173 98.92 True fake: scaffold gap size wrong estimation (local) 93213 111357 1398940 1380805 CM091762.1 scf7180000184173 99.0 True CONTIG scf7180000184173 1744232 misassembled 10220321 10221131 31566 32376 CM091765.1 scf7180000184174 99.63 True fake: scaffold gap size wrong estimation (local) 10224200 10225549 33360 34709 CM091765.1 scf7180000184174 95.33 True fake: scaffold gap size wrong estimation (local) 10225550 10227099 34739 36288 CM091765.1 scf7180000184174 100.0 True indel: indel (<= 5bp) 10227100 10228375 36290 37565 CM091765.1 scf7180000184174 99.92 True translocation, scaffold gap is present 2960752 2961700 39906 38966 CM091759.1 scf7180000184174 96.42 True fake: scaffold gap size wrong estimation (local) 2959810 2960636 41050 40224 CM091759.1 scf7180000184174 100.0 True fake: scaffold gap size wrong estimation (local) 2863383 2959513 137466 41400 CM091759.1 scf7180000184174 99.78 True fake: scaffold gap size wrong estimation (local) 2860299 2862964 140341 137675 CM091759.1 scf7180000184174 99.96 True fake: scaffold gap size wrong estimation (local) 2837611 2859410 162555 140906 CM091759.1 scf7180000184174 99.22 True fake: scaffold gap size wrong estimation (local) 2823079 2837397 176994 162675 CM091759.1 scf7180000184174 99.99 True translocation 17744938 17746033 178090 176995 CM091751.1 scf7180000184174 100.0 True CONTIG scf7180000184174 178090 misassembled 2644802 2682548 938 38678 CM091761.1 scf7180000184175 99.74 True fake: scaffold gap size wrong estimation (local) 2683639 2691163 39339 46667 CM091761.1 scf7180000184175 96.82 True fake: scaffold gap size wrong estimation (local) 2694803 2696775 48384 50356 CM091761.1 scf7180000184175 98.18 True fake: scaffold gap size wrong estimation (local) 2698859 2699579 52075 52795 CM091761.1 scf7180000184175 99.72 True fake: scaffold gap size wrong estimation (local) 2700129 2756970 53382 110319 CM091761.1 scf7180000184175 99.46 True fake: scaffold gap size wrong estimation (local) 2757115 2769312 110468 122416 CM091761.1 scf7180000184175 97.49 True fake: scaffold gap size wrong estimation (local) 2769930 2859152 122706 211082 CM091761.1 scf7180000184175 98.38 True fake: scaffold gap size wrong estimation (local) 2859294 2884689 211439 236806 CM091761.1 scf7180000184175 99.2 True fake: scaffold gap size wrong estimation (local) 2885024 2909060 236887 261168 CM091761.1 scf7180000184175 98.22 True fake: scaffold gap size wrong estimation (local) 2909898 2975195 261584 326938 CM091761.1 scf7180000184175 99.39 True fake: scaffold gap size wrong estimation (local) 2975751 2979772 327183 331193 CM091761.1 scf7180000184175 99.2 True fake: scaffold gap size wrong estimation (local) 2980504 2987992 331335 338816 CM091761.1 scf7180000184175 99.67 True fake: scaffold gap size wrong estimation (local) 2988229 3024755 339686 375400 CM091761.1 scf7180000184175 97.4 True fake: scaffold gap size wrong estimation (local) 3025692 3074934 375888 424676 CM091761.1 scf7180000184175 98.72 True CONTIG scf7180000184175 424750 correct 1897085 1897809 147 878 CM091751.1 scf7180000184176 98.09 True fake: scaffold gap size wrong estimation (local) 1898416 1899912 1991 3487 CM091751.1 scf7180000184176 98.13 True fake: scaffold gap size wrong estimation (local) 1899945 1904130 3544 7729 CM091751.1 scf7180000184176 99.31 True fake: scaffold gap size wrong estimation (local) 1904131 1904735 9049 9653 CM091751.1 scf7180000184176 99.83 True indel: indel (<= 5bp) 1904783 1906887 9700 11804 CM091751.1 scf7180000184176 99.38 True indel: indel (<= 5bp) 1907324 1909725 12239 14640 CM091751.1 scf7180000184176 99.46 True indel: indel (<= 5bp) 1909727 1911020 14641 15934 CM091751.1 scf7180000184176 99.92 True fake: scaffold gap size wrong estimation (local) 1912503 1915152 16850 19499 CM091751.1 scf7180000184176 99.21 True local misassembly 1915844 1916836 19809 20801 CM091751.1 scf7180000184176 99.3 True local misassembly 1917072 1917850 20808 21586 CM091751.1 scf7180000184176 97.05 True fake: scaffold gap size wrong estimation (local) 1918384 1919762 21896 23274 CM091751.1 scf7180000184176 99.71 True fake: scaffold gap size wrong estimation (local) 1920260 1921137 23794 24671 CM091751.1 scf7180000184176 99.09 True indel: indel (<= 5bp) 1921138 1921976 24673 25511 CM091751.1 scf7180000184176 99.88 True local misassembly 1921977 1924892 25636 28551 CM091751.1 scf7180000184176 99.35 True fake: scaffold gap size wrong estimation (local) 1925549 1926056 29140 29647 CM091751.1 scf7180000184176 98.62 True fake: scaffold gap size wrong estimation (local) 1927518 1928108 31077 31667 CM091751.1 scf7180000184176 99.66 True indel: indel (<= 5bp) 1928296 1928986 31859 32549 CM091751.1 scf7180000184176 98.99 True indel: indel (<= 5bp) 1928987 1929994 32551 33558 CM091751.1 scf7180000184176 100.0 True indel: indel (> 5bp) 1929995 1930758 33579 34342 CM091751.1 scf7180000184176 99.08 True indel: indel (<= 5bp) 1931148 1932151 34735 35738 CM091751.1 scf7180000184176 99.7 True fake: scaffold gap size wrong estimation (local) 1934082 1935712 37552 39182 CM091751.1 scf7180000184176 99.69 True local misassembly 1936239 1936964 39711 40436 CM091751.1 scf7180000184176 100.0 True local misassembly 1937656 1938166 41132 41642 CM091751.1 scf7180000184176 99.8 True indel: indel (> 5bp) 1938596 1939211 42079 42694 CM091751.1 scf7180000184176 99.19 True indel: indel (<= 5bp) 1939213 1941566 42695 45048 CM091751.1 scf7180000184176 99.66 True local misassembly 1942211 1943501 45125 46415 CM091751.1 scf7180000184176 99.46 True indel: indel (<= 5bp) 1943507 1945598 46416 48507 CM091751.1 scf7180000184176 99.43 True indel: indel (<= 5bp) 1945599 1946551 48509 49461 CM091751.1 scf7180000184176 99.69 True indel: indel (<= 5bp) 1946583 1947389 49495 50301 CM091751.1 scf7180000184176 99.26 True fake: scaffold gap size wrong estimation (local) 1947390 1948314 50326 51250 CM091751.1 scf7180000184176 99.46 True fake: scaffold gap size wrong estimation (local) 1949087 1949885 52225 53023 CM091751.1 scf7180000184176 99.5 True fake: scaffold gap size wrong estimation (local) 1950453 1953646 53524 57304 CM091751.1 scf7180000184176 96.31 True fake: scaffold gap size wrong estimation (local) 1953741 1956760 57409 60425 CM091751.1 scf7180000184176 99.21 True fake: scaffold gap size wrong estimation (local) 1959010 1969761 61107 71681 CM091751.1 scf7180000184176 97.02 True fake: scaffold gap size wrong estimation (local) 1969909 1988577 71818 90350 CM091751.1 scf7180000184176 98.38 True fake: scaffold gap size wrong estimation (local) 1988888 2005917 90474 107006 CM091751.1 scf7180000184176 96.65 True fake: scaffold gap size wrong estimation (local) 2008814 2098371 107228 196864 CM091751.1 scf7180000184176 99.64 True fake: scaffold gap size wrong estimation (local) 2098811 2099541 197529 198259 CM091751.1 scf7180000184176 99.18 True indel: indel (<= 5bp) 2099543 2100344 198260 199061 CM091751.1 scf7180000184176 99.75 True fake: scaffold gap size wrong estimation (local) 2101994 2102567 200180 200753 CM091751.1 scf7180000184176 99.83 True fake: scaffold gap size wrong estimation (local) 2103481 2104062 201683 202264 CM091751.1 scf7180000184176 99.66 True local misassembly 2104817 2105376 202818 203377 CM091751.1 scf7180000184176 96.07 True fake: scaffold gap size wrong estimation (local) 2105813 2108122 204094 206403 CM091751.1 scf7180000184176 99.31 True fake: scaffold gap size wrong estimation (local) 2108439 2118564 206561 216863 CM091751.1 scf7180000184176 96.49 True fake: scaffold gap size wrong estimation (local) 2118784 2125943 217041 224126 CM091751.1 scf7180000184176 97.88 True local misassembly 2126795 2127870 224998 226073 CM091751.1 scf7180000184176 99.07 True indel: indel (<= 5bp) 2127872 2128989 226074 227191 CM091751.1 scf7180000184176 99.73 True fake: scaffold gap size wrong estimation (local) 2130962 2132116 228839 229993 CM091751.1 scf7180000184176 99.22 True local misassembly 2132823 2133417 230701 231295 CM091751.1 scf7180000184176 98.82 True indel: indel (> 5bp) 2133418 2134781 231311 232674 CM091751.1 scf7180000184176 99.41 True local misassembly 2135882 2140319 233501 237892 CM091751.1 scf7180000184176 97.86 True fake: scaffold gap size wrong estimation (local) 2141833 2143207 238878 240251 CM091751.1 scf7180000184176 99.35 True CONTIG scf7180000184176 240282 correct 8148205 8299146 150971 84 CM091765.1 scf7180000184177 99.54 True indel: indel (> 5bp) 8093188 8148125 206069 151078 CM091765.1 scf7180000184177 99.04 True fake: scaffold gap size wrong estimation (local) 7979308 8091885 319140 207017 CM091765.1 scf7180000184177 98.73 True relocation, inconsistency = 10157 7953513 7969150 334805 319141 CM091765.1 scf7180000184177 99.46 True fake: scaffold gap size wrong estimation (local) 7924703 7953092 363444 334993 CM091765.1 scf7180000184177 99.17 True fake: scaffold gap size wrong estimation (local) 7920161 7922719 367460 364901 CM091765.1 scf7180000184177 99.49 True fake: scaffold gap size wrong estimation (local) 7908888 7919987 378695 367641 CM091765.1 scf7180000184177 98.07 True fake: scaffold gap size wrong estimation (local) 7888785 7908091 398050 378976 CM091765.1 scf7180000184177 97.63 True fake: scaffold gap size wrong estimation (local) 7863842 7888460 422895 398155 CM091765.1 scf7180000184177 98.64 True translocation 16358139 16360030 422896 424793 CM091755.1 scf7180000184177 99.18 True CONTIG scf7180000184177 424793 misassembled 7198503 7199837 1 1323 CM091758.1 scf7180000184178 97.82 True relocation, scaffold gap is present, inconsistency = -1702462 5497431 5841742 1379 345451 CM091758.1 scf7180000184178 99.55 True fake: scaffold gap size wrong estimation (local) 5861976 6166129 360277 664523 CM091758.1 scf7180000184178 99.47 True local misassembly 6167006 6344535 665499 842337 CM091758.1 scf7180000184178 99.05 True fake: scaffold gap size wrong estimation (local) 6344790 6362463 842551 860244 CM091758.1 scf7180000184178 99.29 True fake: scaffold gap size wrong estimation (local) 6362623 6420829 860366 918352 CM091758.1 scf7180000184178 97.83 True fake: scaffold gap size wrong estimation (local) 6420995 6462654 918455 960073 CM091758.1 scf7180000184178 99.5 True fake: scaffold gap size wrong estimation (local) 6462790 6701879 960167 1199937 CM091758.1 scf7180000184178 98.77 True fake: scaffold gap size wrong estimation (local) 6702028 6762917 1200209 1260488 CM091758.1 scf7180000184178 97.68 True fake: scaffold gap size wrong estimation (local) 6763099 6839503 1260970 1336703 CM091758.1 scf7180000184178 98.04 True fake: scaffold gap size wrong estimation (local) 6842030 6843116 1338151 1339237 CM091758.1 scf7180000184178 99.45 True indel: indel (> 5bp) 6843213 6907597 1339346 1403703 CM091758.1 scf7180000184178 99.07 True fake: scaffold gap size wrong estimation (local) 6907759 6957441 1403876 1453577 CM091758.1 scf7180000184178 99.24 True fake: scaffold gap size wrong estimation (local) 6957536 7000978 1453667 1496891 CM091758.1 scf7180000184178 98.78 True local misassembly 7001082 7057942 1497104 1554080 CM091758.1 scf7180000184178 98.89 True fake: scaffold gap size wrong estimation (local) 7058096 7061035 1554222 1557146 CM091758.1 scf7180000184178 98.57 True fake: scaffold gap size wrong estimation (local) 7061055 7089037 1557490 1585331 CM091758.1 scf7180000184178 98.36 True fake: scaffold gap size wrong estimation (local) 7089253 7195900 1585453 1692174 CM091758.1 scf7180000184178 99.02 True relocation, scaffold gap is present, inconsistency = 24701 7222258 7224657 1693831 1696153 CM091758.1 scf7180000184178 95.46 True fake: scaffold gap size wrong estimation (local) 7225235 7226323 1697791 1698879 CM091758.1 scf7180000184178 99.45 True local misassembly 7226452 7227703 1698880 1700131 CM091758.1 scf7180000184178 99.44 True fake: scaffold gap size wrong estimation (local) 7227994 7236196 1701110 1709052 CM091758.1 scf7180000184178 95.87 True CONTIG scf7180000184178 1709052 misassembled 14499925 14505628 1356 7063 CM091756.1 scf7180000184179 99.32 True indel: indel (> 5bp) 14505685 14510219 7127 11632 CM091756.1 scf7180000184179 99.01 True fake: scaffold gap size wrong estimation (local) 14510315 14562902 11717 64371 CM091756.1 scf7180000184179 99.17 True fake: scaffold gap size wrong estimation (local) 14563140 14584675 64676 86218 CM091756.1 scf7180000184179 99.81 True fake: not a misassembly (possible transposable element) 1530198 1530934 89953 89217 CM091764.1 scf7180000184179 100.0 True fake: not a misassembly (possible transposable element) 14588910 14589481 90156 90724 CM091756.1 scf7180000184179 97.03 True translocation, scaffold gap is present 1526380 1527908 93338 91807 CM091764.1 scf7180000184179 99.93 True fake: scaffold gap size wrong estimation (local) 1523725 1525139 95309 93895 CM091764.1 scf7180000184179 99.72 True fake: scaffold gap size wrong estimation (local) 1521656 1523556 97725 95824 CM091764.1 scf7180000184179 99.95 True translocation, scaffold gap is present 4038276 4038802 97746 98273 CM091768.1 scf7180000184179 97.95 True translocation 18588444 18589993 98274 99823 CM091751.1 scf7180000184179 98.77 True local misassembly 18590256 18591274 99824 100842 CM091751.1 scf7180000184179 97.94 True relocation, scaffold gap is present, inconsistency = 42133 18546564 18548102 102406 100863 CM091751.1 scf7180000184179 99.42 True fake: scaffold gap size wrong estimation (local) 18543661 18545893 106661 104402 CM091751.1 scf7180000184179 98.01 True relocation, scaffold gap is present, inconsistency = 18406 18522730 18525233 106683 109189 CM091751.1 scf7180000184179 99.0 True inversion, scaffold gap is present 18532484 18534170 111612 109925 CM091751.1 scf7180000184179 99.88 True translocation, scaffold gap is present 14591356 14602714 113454 124839 CM091756.1 scf7180000184179 99.33 True fake: scaffold gap size wrong estimation (local) 14603659 14768015 125264 288652 CM091756.1 scf7180000184179 98.58 True fake: scaffold gap size wrong estimation (local) 14768177 14825436 288839 345802 CM091756.1 scf7180000184179 98.86 True fake: scaffold gap size wrong estimation (local) 14825680 14916973 345986 437264 CM091756.1 scf7180000184179 99.41 True indel: indel (<= 5bp) 14917002 14940550 437291 460870 CM091756.1 scf7180000184179 99.25 True fake: scaffold gap size wrong estimation (local) 14940666 15008087 460970 528191 CM091756.1 scf7180000184179 99.34 True fake: scaffold gap size wrong estimation (local) 15008546 15009508 529042 529991 CM091756.1 scf7180000184179 97.72 True translocation, scaffold gap is present 4023612 4024378 530050 530816 CM091768.1 scf7180000184179 99.87 True local misassembly 4024924 4027857 530817 533750 CM091768.1 scf7180000184179 99.28 True fake: scaffold gap size wrong estimation (local) 4028014 4032863 533940 538789 CM091768.1 scf7180000184179 99.94 True fake: scaffold gap size wrong estimation (local) 4034115 4036337 539803 541984 CM091768.1 scf7180000184179 97.95 True fake: scaffold gap size wrong estimation (local) 4037172 4038321 542597 543805 CM091768.1 scf7180000184179 96.13 True fake: scaffold gap size wrong estimation (local) 4039095 4039900 543888 544693 CM091768.1 scf7180000184179 100.0 True CONTIG scf7180000184179 545016 misassembled 9393596 9394233 1 638 CM091767.1 scf7180000184180 97.02 True local misassembly 9391061 9391708 640 1287 CM091767.1 scf7180000184180 98.3 True local misassembly 9394234 9394927 1524 2217 CM091767.1 scf7180000184180 96.97 True fake: scaffold gap size wrong estimation (local) 9395966 9398506 2938 5478 CM091767.1 scf7180000184180 99.65 True fake: scaffold gap size wrong estimation (local) 9398483 9399252 5648 6417 CM091767.1 scf7180000184180 100.0 True fake: scaffold gap size wrong estimation (local) 9400572 9401945 7619 9008 CM091767.1 scf7180000184180 98.98 True local misassembly 9402527 9404089 9608 11170 CM091767.1 scf7180000184180 99.68 True translocation, scaffold gap is present 16322011 16323001 12956 13942 CM091752.1 scf7180000184180 98.35 True relocation, scaffold gap is present, inconsistency = -12544362 3782025 3782631 17328 17934 CM091752.1 scf7180000184180 99.84 True relocation, scaffold gap is present, inconsistency = -20677 3763848 3765306 19828 21286 CM091752.1 scf7180000184180 99.11 True fake: scaffold gap size wrong estimation (local) 3766394 3766932 22370 22908 CM091752.1 scf7180000184180 99.44 True relocation, scaffold gap is present, inconsistency = 19702 3788080 3797851 24354 34044 CM091752.1 scf7180000184180 98.7 True fake: scaffold gap size wrong estimation (local) 3798013 3800252 34158 36416 CM091752.1 scf7180000184180 97.66 True relocation, scaffold gap is present, inconsistency = 155383 3958146 3969288 50069 38927 CM091752.1 scf7180000184180 99.64 True indel: indel (> 5bp) 3955543 3958121 52648 50070 CM091752.1 scf7180000184180 99.92 True indel: indel (> 5bp) 3953124 3955304 54997 52817 CM091752.1 scf7180000184180 99.95 True indel: indel (<= 5bp) 3952390 3953122 55730 54998 CM091752.1 scf7180000184180 100.0 True indel: indel (> 5bp) 3950958 3952368 57141 55731 CM091752.1 scf7180000184180 99.93 True local misassembly 3944247 3947042 60155 57360 CM091752.1 scf7180000184180 100.0 True local misassembly 3934678 3944061 70573 61255 CM091752.1 scf7180000184180 99.1 True fake: scaffold gap size wrong estimation (local) 3931809 3934537 73496 70767 CM091752.1 scf7180000184180 99.93 True fake: scaffold gap size wrong estimation (local) 3894989 3931546 110636 73723 CM091752.1 scf7180000184180 98.39 True fake: scaffold gap size wrong estimation (local) 3875708 3894060 129637 111263 CM091752.1 scf7180000184180 99.68 True fake: scaffold gap size wrong estimation (local) 3867815 3875523 137457 129748 CM091752.1 scf7180000184180 99.87 True fake: scaffold gap size wrong estimation (local) 3864242 3866564 140567 138246 CM091752.1 scf7180000184180 99.87 True fake: scaffold gap size wrong estimation (local) 3846490 3864051 157748 140704 CM091752.1 scf7180000184180 96.69 True relocation, inconsistency = 960381 2885570 2886108 157749 158287 CM091752.1 scf7180000184180 99.81 True fake: scaffold gap size wrong estimation (local) 2888139 2889186 160539 161586 CM091752.1 scf7180000184180 99.9 True fake: scaffold gap size wrong estimation (local) 2889187 2889714 161810 162337 CM091752.1 scf7180000184180 99.81 True relocation, scaffold gap is present, inconsistency = 947109 3839589 3841711 167225 165103 CM091752.1 scf7180000184180 99.25 True fake: scaffold gap size wrong estimation (local) 3830516 3839683 177091 168225 CM091752.1 scf7180000184180 96.34 True fake: scaffold gap size wrong estimation (local) 3828185 3830445 179423 177161 CM091752.1 scf7180000184180 99.73 True fake: scaffold gap size wrong estimation (local) 3812987 3828288 194993 179987 CM091752.1 scf7180000184180 97.55 True fake: scaffold gap size wrong estimation (local) 3810195 3812588 197645 195228 CM091752.1 scf7180000184180 97.98 True fake: scaffold gap size wrong estimation (local) 3802761 3810023 204997 197742 CM091752.1 scf7180000184180 99.53 True CONTIG scf7180000184180 206632 misassembled 96468 97235 1 767 CM091752.1 scf7180000184181 99.74 True fake: scaffold gap size wrong estimation (local) 97373 99518 911 3078 CM091752.1 scf7180000184181 98.79 True fake: scaffold gap size wrong estimation (local) 100362 101971 3658 5267 CM091752.1 scf7180000184181 98.01 True indel: indel (> 5bp) 102143 103117 5497 6471 CM091752.1 scf7180000184181 99.79 True indel: indel (> 5bp) 103118 107974 6478 11334 CM091752.1 scf7180000184181 99.61 True indel: indel (<= 5bp) 107975 110939 11336 14300 CM091752.1 scf7180000184181 99.97 True indel: indel (<= 5bp) 110940 117764 14302 21126 CM091752.1 scf7180000184181 99.81 True indel: indel (> 5bp) 118193 122681 21568 26056 CM091752.1 scf7180000184181 99.8 True indel: indel (<= 5bp) 122682 129363 26061 32742 CM091752.1 scf7180000184181 99.88 True fake: scaffold gap size wrong estimation (local) 130897 134732 33316 37151 CM091752.1 scf7180000184181 99.5 True fake: scaffold gap size wrong estimation (local) 134924 136116 38999 40191 CM091752.1 scf7180000184181 99.75 True fake: scaffold gap size wrong estimation (local) 136117 136877 40218 40978 CM091752.1 scf7180000184181 99.87 True local misassembly 137251 138962 40979 42690 CM091752.1 scf7180000184181 98.83 True fake: scaffold gap size wrong estimation (local) 139741 140738 43679 44676 CM091752.1 scf7180000184181 99.3 True fake: scaffold gap size wrong estimation (local) 141320 142800 45064 46544 CM091752.1 scf7180000184181 99.66 True fake: scaffold gap size wrong estimation (local) 142906 152115 46644 55642 CM091752.1 scf7180000184181 96.05 True fake: scaffold gap size wrong estimation (local) 152718 153440 56141 56863 CM091752.1 scf7180000184181 99.45 True indel: indel (<= 5bp) 153441 154275 56867 57701 CM091752.1 scf7180000184181 98.44 True fake: scaffold gap size wrong estimation (local) 155368 156231 58546 59409 CM091752.1 scf7180000184181 98.73 True fake: scaffold gap size wrong estimation (local) 157214 159304 60517 62607 CM091752.1 scf7180000184181 99.52 True indel: indel (> 5bp) 159678 160907 62988 64217 CM091752.1 scf7180000184181 98.94 True indel: indel (<= 5bp) 161141 162337 64454 65650 CM091752.1 scf7180000184181 99.42 True local misassembly 163352 164054 66253 66955 CM091752.1 scf7180000184181 96.87 True indel: indel (<= 5bp) 164055 165938 66957 68840 CM091752.1 scf7180000184181 99.26 True fake: scaffold gap size wrong estimation (local) 166743 167362 69516 70135 CM091752.1 scf7180000184181 98.71 True indel: indel (<= 5bp) 167364 169044 70136 71816 CM091752.1 scf7180000184181 99.46 True fake: scaffold gap size wrong estimation (local) 169603 171241 72231 73869 CM091752.1 scf7180000184181 95.42 True indel: indel (<= 5bp) 171246 172128 73870 74752 CM091752.1 scf7180000184181 99.89 True local misassembly 173336 174641 74881 76186 CM091752.1 scf7180000184181 98.32 True local misassembly 175225 176113 76761 77649 CM091752.1 scf7180000184181 98.88 True translocation 20353096 20356409 82420 79101 CM091751.1 scf7180000184181 98.98 True fake: scaffold gap size wrong estimation (local) 20343488 20352350 91584 82678 CM091751.1 scf7180000184181 98.83 True fake: scaffold gap size wrong estimation (local) 20339922 20343270 95046 91710 CM091751.1 scf7180000184181 99.01 True fake: scaffold gap size wrong estimation (local) 20335768 20338974 99005 95799 CM091751.1 scf7180000184181 99.56 True indel: indel (<= 5bp) 20333416 20335766 101356 99006 CM091751.1 scf7180000184181 99.87 True indel: indel (<= 5bp) 20332649 20333414 102122 101357 CM091751.1 scf7180000184181 100.0 True indel: indel (<= 5bp) 20329815 20332648 104957 102124 CM091751.1 scf7180000184181 99.93 True indel: indel (<= 5bp) 20329261 20329813 105510 104958 CM091751.1 scf7180000184181 100.0 True indel: indel (<= 5bp) 20327493 20328932 107276 105837 CM091751.1 scf7180000184181 99.51 True indel: indel (<= 5bp) 20326607 20327283 108164 107488 CM091751.1 scf7180000184181 99.85 True local misassembly 20324520 20326054 110258 108724 CM091751.1 scf7180000184181 99.8 True indel: indel (<= 5bp) 20323321 20324519 111459 110261 CM091751.1 scf7180000184181 99.92 True indel: indel (<= 5bp) 20322688 20323320 112093 111461 CM091751.1 scf7180000184181 99.21 True indel: indel (<= 5bp) 20321955 20322685 112824 112094 CM091751.1 scf7180000184181 99.73 True indel: indel (<= 5bp) 20321281 20321954 113499 112826 CM091751.1 scf7180000184181 100.0 True indel: indel (<= 5bp) 20320097 20321280 114684 113501 CM091751.1 scf7180000184181 98.82 True indel: indel (<= 5bp) 20317574 20320096 117208 114686 CM091751.1 scf7180000184181 99.52 True indel: indel (<= 5bp) 20315998 20317573 118788 117213 CM091751.1 scf7180000184181 99.62 True indel: indel (<= 5bp) 20314662 20315997 120127 118792 CM091751.1 scf7180000184181 95.43 True fake: scaffold gap size wrong estimation (local) 20312229 20314236 122573 120566 CM091751.1 scf7180000184181 99.25 True indel: stretch of mismatches 20310950 20311765 123852 123037 CM091751.1 scf7180000184181 99.39 True fake: scaffold gap size wrong estimation (local) 20309035 20310476 125753 124312 CM091751.1 scf7180000184181 99.72 True indel: indel (<= 5bp) 20308403 20309034 126386 125755 CM091751.1 scf7180000184181 99.53 True relocation, scaffold gap is present, inconsistency = 10799 20291959 20296241 132043 127749 CM091751.1 scf7180000184181 99.05 True fake: scaffold gap size wrong estimation (local) 20285851 20291285 137690 132443 CM091751.1 scf7180000184181 95.66 True fake: scaffold gap size wrong estimation (local) 20280176 20285168 143013 138038 CM091751.1 scf7180000184181 98.4 True fake: scaffold gap size wrong estimation (local) 20278693 20279706 144147 143126 CM091751.1 scf7180000184181 98.73 True fake: scaffold gap size wrong estimation (local) 20275640 20278438 147200 144405 CM091751.1 scf7180000184181 99.0 True fake: scaffold gap size wrong estimation (local) 20271085 20275454 151819 147380 CM091751.1 scf7180000184181 97.19 True fake: scaffold gap size wrong estimation (local) 20264981 20270547 157818 152197 CM091751.1 scf7180000184181 98.26 True fake: scaffold gap size wrong estimation (local) 20261818 20264124 160790 158469 CM091751.1 scf7180000184181 98.62 True fake: scaffold gap size wrong estimation (local) 20257519 20261559 165031 161001 CM091751.1 scf7180000184181 98.47 True indel: stretch of mismatches 20254058 20257493 168365 165057 CM091751.1 scf7180000184181 95.31 True fake: scaffold gap size wrong estimation (local) 20251918 20253089 170193 169022 CM091751.1 scf7180000184181 99.49 True fake: scaffold gap size wrong estimation (local) 20249742 20250307 172632 172067 CM091751.1 scf7180000184181 99.12 True indel: indel (<= 5bp) 20248669 20249741 173708 172636 CM091751.1 scf7180000184181 98.88 True indel: indel (<= 5bp) 20247967 20248621 174412 173758 CM091751.1 scf7180000184181 99.54 True indel: indel (<= 5bp) 20246790 20247597 175593 174786 CM091751.1 scf7180000184181 99.13 True local misassembly 20245648 20246282 176738 176104 CM091751.1 scf7180000184181 98.9 True indel: indel (<= 5bp) 20244656 20245647 177731 176740 CM091751.1 scf7180000184181 98.79 True indel: indel (<= 5bp) 20243889 20244655 178503 177737 CM091751.1 scf7180000184181 99.35 True fake: scaffold gap size wrong estimation (local) 20241483 20242738 180491 179236 CM091751.1 scf7180000184181 97.93 True indel: indel (> 5bp) 20239310 20241373 182591 180528 CM091751.1 scf7180000184181 99.61 True fake: scaffold gap size wrong estimation (local) 20229733 20238978 192163 182819 CM091751.1 scf7180000184181 98.69 True fake: scaffold gap size wrong estimation (local) 20224205 20229290 197365 192311 CM091751.1 scf7180000184181 99.27 True fake: scaffold gap size wrong estimation (local) 20221190 20222318 199477 198339 CM091751.1 scf7180000184181 97.99 True fake: scaffold gap size wrong estimation (local) 20220350 20220969 200268 199649 CM091751.1 scf7180000184181 100.0 True indel: indel (<= 5bp) 20217546 20220349 203073 200270 CM091751.1 scf7180000184181 99.47 True indel: indel (<= 5bp) 20216583 20217387 204039 203235 CM091751.1 scf7180000184181 99.75 True indel: indel (<= 5bp) 20214908 20216582 205715 204041 CM091751.1 scf7180000184181 98.75 True fake: scaffold gap size wrong estimation (local) 20199945 20207299 214373 207012 CM091751.1 scf7180000184181 99.29 True fake: scaffold gap size wrong estimation (local) 20181608 20199338 232302 214735 CM091751.1 scf7180000184181 96.17 True fake: scaffold gap size wrong estimation (local) 20176475 20176999 232850 232326 CM091751.1 scf7180000184181 99.62 True fake: scaffold gap size wrong estimation (local) 20175526 20176153 233756 233129 CM091751.1 scf7180000184181 99.52 True fake: scaffold gap size wrong estimation (local) 20161709 20175396 247534 233878 CM091751.1 scf7180000184181 98.68 True fake: scaffold gap size wrong estimation (local) 20160167 20161153 248668 247682 CM091751.1 scf7180000184181 99.09 True indel: indel (> 5bp) 20157789 20159875 251038 248952 CM091751.1 scf7180000184181 99.14 True fake: scaffold gap size wrong estimation (local) 20155565 20157291 252907 251181 CM091751.1 scf7180000184181 99.65 True indel: indel (<= 5bp) 20154907 20155563 253564 252908 CM091751.1 scf7180000184181 99.7 True indel: indel (<= 5bp) 20153858 20154905 254612 253565 CM091751.1 scf7180000184181 99.71 True fake: scaffold gap size wrong estimation (local) 20151443 20153566 257009 254880 CM091751.1 scf7180000184181 99.48 True fake: scaffold gap size wrong estimation (local) 20146845 20151332 261773 257279 CM091751.1 scf7180000184181 99.11 True fake: scaffold gap size wrong estimation (local) 20145870 20146688 262780 261919 CM091751.1 scf7180000184181 95.27 True fake: scaffold gap size wrong estimation (local) 20134299 20145396 274202 263039 CM091751.1 scf7180000184181 98.71 True fake: scaffold gap size wrong estimation (local) 20130539 20133798 277777 274494 CM091751.1 scf7180000184181 98.42 True fake: scaffold gap size wrong estimation (local) 20129495 20130218 278734 278011 CM091751.1 scf7180000184181 99.72 True fake: scaffold gap size wrong estimation (local) 20124552 20129290 283607 278895 CM091751.1 scf7180000184181 98.57 True fake: scaffold gap size wrong estimation (local) 20118469 20124421 289694 283711 CM091751.1 scf7180000184181 98.81 True fake: scaffold gap size wrong estimation (local) 20115286 20118365 292860 289771 CM091751.1 scf7180000184181 98.96 True fake: scaffold gap size wrong estimation (local) 20110699 20114640 297185 293259 CM091751.1 scf7180000184181 97.79 True indel: indel (> 5bp) 20099587 20110532 308329 297312 CM091751.1 scf7180000184181 98.59 True fake: not a misassembly (possible transposable element) 90223 91712 308350 309837 CM091752.1 scf7180000184181 98.66 True fake: not a misassembly (possible transposable element) 20097027 20099265 312489 310248 CM091751.1 scf7180000184181 99.51 True fake: scaffold gap size wrong estimation (local) 20091141 20095347 317878 313594 CM091751.1 scf7180000184181 97.72 True fake: scaffold gap size wrong estimation (local) 20087566 20090530 321149 318206 CM091751.1 scf7180000184181 98.25 True local misassembly 20083814 20087420 324888 321407 CM091751.1 scf7180000184181 95.33 True fake: scaffold gap size wrong estimation (local) 20076780 20083561 331979 325245 CM091751.1 scf7180000184181 96.43 True fake: scaffold gap size wrong estimation (local) 20071574 20076640 337611 332552 CM091751.1 scf7180000184181 98.52 True fake: scaffold gap size wrong estimation (local) 20067346 20070832 341568 338085 CM091751.1 scf7180000184181 98.6 True fake: not a misassembly (possible transposable element) 10327473 10328488 341608 342623 CM091765.1 scf7180000184181 100.0 True fake: not a misassembly (possible transposable element) 20065706 20066915 343832 342624 CM091751.1 scf7180000184181 98.93 True translocation, scaffold gap is present 10328381 10340282 343853 355738 CM091765.1 scf7180000184181 99.76 True fake: scaffold gap size wrong estimation (local) 10340596 10341193 356295 356892 CM091765.1 scf7180000184181 99.67 True CONTIG scf7180000184181 356939 misassembled 370732 372223 78 1594 CM091763.1 scf7180000184182 99.27 True fake: scaffold gap size wrong estimation (local) 373090 374559 2285 3736 CM091763.1 scf7180000184182 98.62 True fake: scaffold gap size wrong estimation (local) 375411 376702 4802 6093 CM091763.1 scf7180000184182 99.69 True indel: indel (<= 5bp) 376708 377888 6094 7274 CM091763.1 scf7180000184182 98.14 True fake: scaffold gap size wrong estimation (local) 378826 590511 8128 219746 CM091763.1 scf7180000184182 99.45 True fake: scaffold gap size wrong estimation (local) 591176 596476 219905 225205 CM091763.1 scf7180000184182 99.98 True indel: indel (<= 5bp) 596477 597193 225207 225923 CM091763.1 scf7180000184182 100.0 True fake: scaffold gap size wrong estimation (local) 597598 598478 226409 227289 CM091763.1 scf7180000184182 99.89 True indel: stretch of mismatches 598763 600873 227574 229684 CM091763.1 scf7180000184182 99.95 True indel: indel (<= 5bp) 600875 604163 229685 232973 CM091763.1 scf7180000184182 100.0 True local misassembly 605685 607307 233510 235132 CM091763.1 scf7180000184182 99.88 True fake: scaffold gap size wrong estimation (local) 607513 620723 235247 248499 CM091763.1 scf7180000184182 99.29 True relocation, inconsistency = 10456 631180 663664 248500 281018 CM091763.1 scf7180000184182 99.61 True fake: scaffold gap size wrong estimation (local) 664587 821523 281575 439160 CM091763.1 scf7180000184182 99.79 True fake: scaffold gap size wrong estimation (local) 823005 888995 440157 506398 CM091763.1 scf7180000184182 99.57 True fake: scaffold gap size wrong estimation (local) 889899 892313 506929 509343 CM091763.1 scf7180000184182 99.96 True fake: scaffold gap size wrong estimation (local) 892424 941018 509438 557529 CM091763.1 scf7180000184182 98.0 True fake: scaffold gap size wrong estimation (local) 941262 994630 557907 610608 CM091763.1 scf7180000184182 98.06 True fake: scaffold gap size wrong estimation (local) 995623 1008882 610842 624131 CM091763.1 scf7180000184182 99.38 True translocation 13526170 13536031 633994 624132 CM091758.1 scf7180000184182 99.74 True translocation 6387728 6408678 655091 633995 CM091755.1 scf7180000184182 97.35 True fake: scaffold gap size wrong estimation (local) 6321870 6387608 720973 655193 CM091755.1 scf7180000184182 99.6 True local misassembly 6274267 6306161 774883 742985 CM091755.1 scf7180000184182 99.36 True indel: indel (> 5bp) 6130719 6274137 919515 774940 CM091755.1 scf7180000184182 98.9 True fake: scaffold gap size wrong estimation (local) 5813441 6130523 1236830 919585 CM091755.1 scf7180000184182 99.22 True fake: scaffold gap size wrong estimation (local) 5811695 5812412 1238163 1237446 CM091755.1 scf7180000184182 99.86 True indel: indel (> 5bp) 5785065 5811533 1264819 1238312 CM091755.1 scf7180000184182 99.42 True fake: scaffold gap size wrong estimation (local) 5758968 5784934 1290886 1264926 CM091755.1 scf7180000184182 99.18 True indel: indel (> 5bp) 5723385 5758704 1326577 1291211 CM091755.1 scf7180000184182 99.31 True fake: scaffold gap size wrong estimation (local) 5647819 5723183 1401813 1326754 CM091755.1 scf7180000184182 98.74 True fake: scaffold gap size wrong estimation (local) 5640913 5647518 1408538 1401928 CM091755.1 scf7180000184182 99.55 True fake: scaffold gap size wrong estimation (local) 5302001 5640962 1747819 1409115 CM091755.1 scf7180000184182 99.36 True indel: indel (<= 5bp) 5292415 5301946 1757410 1747875 CM091755.1 scf7180000184182 99.35 True indel: indel (> 5bp) 5213846 5292364 1835708 1757470 CM091755.1 scf7180000184182 99.04 True fake: scaffold gap size wrong estimation (local) 4971443 5213622 2078194 1835889 CM091755.1 scf7180000184182 99.44 True local misassembly 4965524 4967144 2079816 2078195 CM091755.1 scf7180000184182 99.51 True local misassembly 4962881 4963992 2080955 2079817 CM091755.1 scf7180000184182 99.36 True fake: scaffold gap size wrong estimation (local) 4861581 4962295 2181467 2081430 CM091755.1 scf7180000184182 98.54 True fake: scaffold gap size wrong estimation (local) 4758538 4861433 2284507 2181580 CM091755.1 scf7180000184182 99.07 True fake: scaffold gap size wrong estimation (local) 4718782 4757893 2323900 2284774 CM091755.1 scf7180000184182 99.36 True fake: scaffold gap size wrong estimation (local) 4674217 4718421 2368468 2324284 CM091755.1 scf7180000184182 99.54 True fake: scaffold gap size wrong estimation (local) 4671416 4673340 2370780 2368856 CM091755.1 scf7180000184182 99.53 True indel: indel (> 5bp) 4655830 4671342 2386315 2370824 CM091755.1 scf7180000184182 99.41 True fake: scaffold gap size wrong estimation (local) 4487744 4654645 2553618 2386808 CM091755.1 scf7180000184182 99.32 True indel: indel (> 5bp) 4398820 4487653 2642298 2553723 CM091755.1 scf7180000184182 99.02 True local misassembly 4326796 4398642 2714058 2642359 CM091755.1 scf7180000184182 99.07 True fake: scaffold gap size wrong estimation (local) 4307041 4326720 2733807 2714122 CM091755.1 scf7180000184182 99.38 True fake: scaffold gap size wrong estimation (local) 4221265 4306473 2819316 2734015 CM091755.1 scf7180000184182 99.13 True indel: indel (> 5bp) 4180766 4220870 2860130 2819723 CM091755.1 scf7180000184182 97.76 True indel: indel (> 5bp) 4113692 4180781 2927180 2860131 CM091755.1 scf7180000184182 99.36 True translocation 3095761 3102169 2933588 2927181 CM091762.1 scf7180000184182 99.58 True fake: scaffold gap size wrong estimation (local) 3086400 3095575 2942915 2933747 CM091762.1 scf7180000184182 99.64 True fake: scaffold gap size wrong estimation (local) 3033577 3086067 2995618 2943179 CM091762.1 scf7180000184182 99.06 True fake: scaffold gap size wrong estimation (local) 3031446 3033012 2997734 2996168 CM091762.1 scf7180000184182 99.62 True indel: indel (<= 5bp) 3029728 3031442 2999449 2997735 CM091762.1 scf7180000184182 99.65 True indel: indel (<= 5bp) 3029139 3029689 3000035 2999485 CM091762.1 scf7180000184182 100.0 True local misassembly 3026419 3028541 3002760 3000638 CM091762.1 scf7180000184182 99.67 True indel: indel (> 5bp) 3024123 3026013 3005048 3003158 CM091762.1 scf7180000184182 99.84 True local misassembly 3020818 3022053 3008355 3007120 CM091762.1 scf7180000184182 99.6 True indel: indel (<= 5bp) 3020024 3020817 3009153 3008360 CM091762.1 scf7180000184182 99.75 True indel: indel (<= 5bp) 3018844 3019770 3010330 3009404 CM091762.1 scf7180000184182 99.35 True local misassembly 3014266 3015158 3011223 3010331 CM091762.1 scf7180000184182 99.89 True indel: indel (<= 5bp) 3012019 3014254 3013468 3011233 CM091762.1 scf7180000184182 99.6 True indel: indel (<= 5bp) 3010560 3011888 3014929 3013601 CM091762.1 scf7180000184182 99.25 True indel: indel (> 5bp) 3008761 3010187 3016721 3015295 CM091762.1 scf7180000184182 99.72 True relocation, scaffold gap is present, inconsistency = -200348 2987241 2996192 3229638 3238593 CM091762.1 scf7180000184182 99.43 True relocation, scaffold gap is present, inconsistency = -101864 2952440 2987139 3296705 3331574 CM091762.1 scf7180000184182 98.96 True relocation, scaffold gap is present, inconsistency = -2990307 62184 79722 3396926 3414465 CM091762.1 scf7180000184182 99.93 True relocation, scaffold gap is present, inconsistency = 2836154 2996293 3005281 3494882 3503868 CM091762.1 scf7180000184182 99.78 True relocation, scaffold gap is present, inconsistency = -3023538 8568 32324 3530693 3554415 CM091762.1 scf7180000184182 99.78 True relocation, inconsistency = 8696 41021 49010 3562405 3554416 CM091762.1 scf7180000184182 99.95 True CONTIG scf7180000184182 3572367 misassembled 12188699 12194763 6098 26 CM091756.1 scf7180000184183 99.13 True fake: scaffold gap size wrong estimation (local) 12156988 12188488 37813 6268 CM091756.1 scf7180000184183 99.06 True fake: scaffold gap size wrong estimation (local) 12150963 12156694 43749 38016 CM091756.1 scf7180000184183 99.79 True local misassembly 12148372 12150337 46378 44413 CM091756.1 scf7180000184183 100.0 True local misassembly 12144006 12147411 49784 46379 CM091756.1 scf7180000184183 99.97 True indel: indel (<= 5bp) 12138612 12144005 55179 49786 CM091756.1 scf7180000184183 99.91 True indel: indel (<= 5bp) 12137443 12138610 56347 55180 CM091756.1 scf7180000184183 99.74 True indel: indel (<= 5bp) 12136725 12137441 57064 56348 CM091756.1 scf7180000184183 100.0 True local misassembly 12032937 12136049 160768 57807 CM091756.1 scf7180000184183 99.32 True indel: indel (> 5bp) 11985690 12032863 208206 160857 CM091756.1 scf7180000184183 99.16 True indel: indel (<= 5bp) 11974627 11985574 219019 208320 CM091756.1 scf7180000184183 97.02 True fake: scaffold gap size wrong estimation (local) 11960622 11974215 232769 219143 CM091756.1 scf7180000184183 99.22 True fake: scaffold gap size wrong estimation (local) 11956092 11960311 237165 232894 CM091756.1 scf7180000184183 98.12 True fake: scaffold gap size wrong estimation (local) 11952370 11954196 240208 238382 CM091756.1 scf7180000184183 98.91 True fake: scaffold gap size wrong estimation (local) 11715988 11951603 476412 240585 CM091756.1 scf7180000184183 99.11 True fake: scaffold gap size wrong estimation (local) 11521156 11715775 676560 476557 CM091756.1 scf7180000184183 96.64 True fake: scaffold gap size wrong estimation (local) 11489367 11520902 708385 676783 CM091756.1 scf7180000184183 99.1 True fake: scaffold gap size wrong estimation (local) 11361186 11489192 836437 708561 CM091756.1 scf7180000184183 99.15 True fake: scaffold gap size wrong estimation (local) 11294322 11360930 902986 836589 CM091756.1 scf7180000184183 98.8 True fake: scaffold gap size wrong estimation (local) 11229993 11294100 967098 903559 CM091756.1 scf7180000184183 98.18 True indel: indel (> 5bp) 11224699 11229928 972405 967173 CM091756.1 scf7180000184183 99.43 True fake: scaffold gap size wrong estimation (local) 11221723 11222882 974998 973839 CM091756.1 scf7180000184183 99.57 True indel: indel (<= 5bp) 11219326 11221722 977397 975001 CM091756.1 scf7180000184183 99.29 True indel: indel (> 5bp) 11218074 11219144 978662 977592 CM091756.1 scf7180000184183 98.04 True indel: indel (> 5bp) 11216863 11218066 979866 978663 CM091756.1 scf7180000184183 99.75 True fake: scaffold gap size wrong estimation (local) 11202112 11216693 994596 980009 CM091756.1 scf7180000184183 99.08 True CONTIG scf7180000184183 994600 correct 593445 610639 1 17236 CM091764.1 scf7180000184184 99.64 True fake: scaffold gap size wrong estimation (local) 611577 616597 18096 23116 CM091764.1 scf7180000184184 99.96 True indel: indel (<= 5bp) 616630 618756 23151 25281 CM091764.1 scf7180000184184 99.67 True fake: scaffold gap size wrong estimation (local) 618909 623633 25410 29946 CM091764.1 scf7180000184184 95.74 True fake: scaffold gap size wrong estimation (local) 623881 639069 30094 45245 CM091764.1 scf7180000184184 99.64 True fake: scaffold gap size wrong estimation (local) 639523 640948 45832 47257 CM091764.1 scf7180000184184 100.0 True fake: scaffold gap size wrong estimation (local) 641219 645833 48531 53145 CM091764.1 scf7180000184184 99.96 True local misassembly 646017 649227 53146 56356 CM091764.1 scf7180000184184 99.38 True indel: indel (<= 5bp) 649228 650222 56358 57352 CM091764.1 scf7180000184184 100.0 True local misassembly 650359 654385 57353 61379 CM091764.1 scf7180000184184 99.35 True indel: indel (<= 5bp) 654576 656009 61574 63007 CM091764.1 scf7180000184184 100.0 True fake: scaffold gap size wrong estimation (local) 656260 668777 63220 75377 CM091764.1 scf7180000184184 96.99 True fake: scaffold gap size wrong estimation (local) 669028 678748 75474 85146 CM091764.1 scf7180000184184 99.36 True fake: scaffold gap size wrong estimation (local) 679373 692730 85720 98807 CM091764.1 scf7180000184184 97.84 True fake: scaffold gap size wrong estimation (local) 692887 699054 99199 105366 CM091764.1 scf7180000184184 99.84 True fake: scaffold gap size wrong estimation (local) 699723 701530 105646 107460 CM091764.1 scf7180000184184 98.91 True fake: scaffold gap size wrong estimation (local) 702025 704070 107680 109725 CM091764.1 scf7180000184184 100.0 True fake: scaffold gap size wrong estimation (local) 704451 711088 110072 116658 CM091764.1 scf7180000184184 99.05 True fake: not a misassembly (possible transposable element) 4627152 4628539 116679 118066 CM091754.1 scf7180000184184 99.28 True fake: not a misassembly (possible transposable element) 711925 712601 118261 118937 CM091764.1 scf7180000184184 99.85 True fake: scaffold gap size wrong estimation (local) 713517 715629 119166 121278 CM091764.1 scf7180000184184 98.82 True indel: indel (<= 5bp) 715630 721088 121280 126738 CM091764.1 scf7180000184184 100.0 True indel: indel (<= 5bp) 721089 723468 126740 129119 CM091764.1 scf7180000184184 100.0 True fake: scaffold gap size wrong estimation (local) 725190 775968 129894 180321 CM091764.1 scf7180000184184 98.76 True translocation, scaffold gap is present 80532 81260 180481 181209 CM091753.1 scf7180000184184 99.18 True CONTIG scf7180000184184 181209 misassembled 9305392 9306668 2077 3356 CM091767.1 scf7180000184185 99.69 True fake: scaffold gap size wrong estimation (local) 9307885 9309329 4247 5693 CM091767.1 scf7180000184185 99.72 True fake: scaffold gap size wrong estimation (local) 9309385 9309901 6952 7468 CM091767.1 scf7180000184185 97.68 True local misassembly 9310187 9311518 7469 8800 CM091767.1 scf7180000184185 98.35 True fake: scaffold gap size wrong estimation (local) 9311519 9312380 8824 9685 CM091767.1 scf7180000184185 99.3 True fake: scaffold gap size wrong estimation (local) 9312958 9316198 10178 13418 CM091767.1 scf7180000184185 99.75 True fake: scaffold gap size wrong estimation (local) 9316314 9322183 13531 19458 CM091767.1 scf7180000184185 99.17 True fake: scaffold gap size wrong estimation (local) 9322431 9324701 19709 21979 CM091767.1 scf7180000184185 99.78 True fake: scaffold gap size wrong estimation (local) 9324772 9325598 22377 23203 CM091767.1 scf7180000184185 99.64 True fake: scaffold gap size wrong estimation (local) 9326274 9327071 25179 25976 CM091767.1 scf7180000184185 97.62 True relocation, scaffold gap is present, inconsistency = 244505 9080037 9081748 27696 25997 CM091767.1 scf7180000184185 98.8 True relocation, scaffold gap is present, inconsistency = -68205 9145144 9148221 30795 27717 CM091767.1 scf7180000184185 98.03 True translocation, scaffold gap is present 1712763 1713408 31339 31984 CM091764.1 scf7180000184185 99.38 True fake: scaffold gap size wrong estimation (local) 1716067 1717972 33887 35780 CM091764.1 scf7180000184185 98.69 True fake: scaffold gap size wrong estimation (local) 1718167 1718841 36231 36905 CM091764.1 scf7180000184185 100.0 True fake: scaffold gap size wrong estimation (local) 1719989 1721349 38201 39561 CM091764.1 scf7180000184185 99.71 True fake: scaffold gap size wrong estimation (local) 1721782 1722426 39727 40371 CM091764.1 scf7180000184185 99.38 True indel: indel (<= 5bp) 1722428 1723332 40372 41276 CM091764.1 scf7180000184185 99.78 True indel: indel (<= 5bp) 1723333 1724012 41278 41957 CM091764.1 scf7180000184185 100.0 True fake: scaffold gap size wrong estimation (local) 1725479 1727382 43448 45351 CM091764.1 scf7180000184185 100.0 True fake: scaffold gap size wrong estimation (local) 1728182 1730110 46220 48149 CM091764.1 scf7180000184185 99.51 True translocation 43377 53751 48150 58576 CM091760.1 scf7180000184185 99.5 True fake: scaffold gap size wrong estimation (local) 53954 69313 58757 74124 CM091760.1 scf7180000184185 99.95 True relocation, inconsistency = 9614 78928 83921 74125 79606 CM091760.1 scf7180000184185 96.71 True fake: scaffold gap size wrong estimation (local) 86733 88111 80859 82239 CM091760.1 scf7180000184185 99.64 True fake: scaffold gap size wrong estimation (local) 89927 90759 83812 84643 CM091760.1 scf7180000184185 99.88 True translocation, scaffold gap is present 1710899 1711503 86939 87542 CM091764.1 scf7180000184185 99.31 True CONTIG scf7180000184185 87542 misassembled 9536359 9540199 4012 1 CM091767.1 scf7180000184186 96.22 True fake: not a misassembly (possible transposable element) 1579634 1580389 9316 8561 CM091764.1 scf7180000184186 99.87 True fake: not a misassembly (possible transposable element) 9529499 9531631 12886 10754 CM091767.1 scf7180000184186 97.05 True relocation, scaffold gap is present, inconsistency = 1112052 8416651 8417407 12926 13682 CM091767.1 scf7180000184186 100.0 True fake: scaffold gap size wrong estimation (local) 8419813 8421118 14985 16290 CM091767.1 scf7180000184186 100.0 True translocation, scaffold gap is present 6469476 6471107 18077 16417 CM091768.1 scf7180000184186 97.29 True fake: scaffold gap size wrong estimation (local) 6468380 6469474 20486 19392 CM091768.1 scf7180000184186 100.0 True indel: indel (<= 5bp) 6467138 6468379 21730 20489 CM091768.1 scf7180000184186 100.0 True fake: scaffold gap size wrong estimation (local) 6466625 6467137 22470 21958 CM091768.1 scf7180000184186 100.0 True translocation, scaffold gap is present 8422693 8424059 22494 23923 CM091767.1 scf7180000184186 98.35 True fake: scaffold gap size wrong estimation (local) 8424347 8431411 24051 30967 CM091767.1 scf7180000184186 97.67 True fake: not a misassembly (possible transposable element) 6449666 6451515 32836 30988 CM091768.1 scf7180000184186 97.93 True fake: not a misassembly (possible transposable element) 8433543 8434286 33893 34636 CM091767.1 scf7180000184186 99.87 True fake: scaffold gap size wrong estimation (local) 8434835 8436212 35920 37296 CM091767.1 scf7180000184186 99.71 True fake: scaffold gap size wrong estimation (local) 8436979 8440176 37818 41026 CM091767.1 scf7180000184186 99.69 True relocation, scaffold gap is present, inconsistency = 1040403 9480632 9482584 42998 41079 CM091767.1 scf7180000184186 97.03 True local misassembly 9473479 9480088 50167 43575 CM091767.1 scf7180000184186 98.19 True translocation 5736252 5738278 50168 52194 CM091754.1 scf7180000184186 98.77 True fake: scaffold gap size wrong estimation (local) 5739912 5743332 53496 56911 CM091754.1 scf7180000184186 99.85 True fake: not a misassembly (possible transposable element) 9264038 9265218 56975 58157 CM091767.1 scf7180000184186 99.66 True fake: not a misassembly (possible transposable element) 5743387 5749072 58208 63920 CM091754.1 scf7180000184186 99.81 True fake: scaffold gap size wrong estimation (local) 5749878 5962141 64438 276237 CM091754.1 scf7180000184186 99.58 True fake: scaffold gap size wrong estimation (local) 5962857 5979818 276801 293762 CM091754.1 scf7180000184186 99.86 True local misassembly 5984112 5985667 293763 295318 CM091754.1 scf7180000184186 99.81 True indel: indel (<= 5bp) 5985668 5989246 295320 298898 CM091754.1 scf7180000184186 99.94 True indel: indel (<= 5bp) 5989247 5992194 298900 301847 CM091754.1 scf7180000184186 99.97 True indel: indel (<= 5bp) 5992197 5996639 301848 306290 CM091754.1 scf7180000184186 100.0 True indel: indel (<= 5bp) 5996640 5998047 306292 307699 CM091754.1 scf7180000184186 100.0 True indel: indel (<= 5bp) 5998049 6000224 307700 309875 CM091754.1 scf7180000184186 100.0 True indel: indel (<= 5bp) 6000225 6001558 309877 311210 CM091754.1 scf7180000184186 100.0 True indel: indel (<= 5bp) 6001559 6007683 311212 317336 CM091754.1 scf7180000184186 99.92 True indel: indel (<= 5bp) 6007807 6009450 317457 319100 CM091754.1 scf7180000184186 99.94 True indel: indel (<= 5bp) 6009451 6010916 319102 320567 CM091754.1 scf7180000184186 99.93 True indel: indel (<= 5bp) 6010918 6011552 320568 321202 CM091754.1 scf7180000184186 100.0 True indel: indel (<= 5bp) 6011553 6014169 321204 323820 CM091754.1 scf7180000184186 99.77 True indel: indel (<= 5bp) 6014170 6015664 323822 325316 CM091754.1 scf7180000184186 99.8 True indel: indel (<= 5bp) 6015665 6018112 325318 327765 CM091754.1 scf7180000184186 99.96 True indel: indel (<= 5bp) 6018115 6022571 327766 332222 CM091754.1 scf7180000184186 99.87 True indel: indel (<= 5bp) 6022573 6024087 332223 333737 CM091754.1 scf7180000184186 99.93 True local misassembly 6024298 6026955 333738 336395 CM091754.1 scf7180000184186 99.02 True indel: indel (<= 5bp) 6027442 6032313 336887 341758 CM091754.1 scf7180000184186 99.82 True local misassembly 6033117 6035806 342565 345254 CM091754.1 scf7180000184186 99.93 True indel: indel (> 5bp) 6035813 6039708 345255 349150 CM091754.1 scf7180000184186 99.97 True fake: scaffold gap size wrong estimation (local) 6039879 6040690 349482 350293 CM091754.1 scf7180000184186 100.0 True indel: indel (<= 5bp) 6040691 6042254 350295 351858 CM091754.1 scf7180000184186 99.94 True indel: indel (<= 5bp) 6042256 6045803 351859 355406 CM091754.1 scf7180000184186 99.86 True indel: indel (<= 5bp) 6045804 6046443 355408 356047 CM091754.1 scf7180000184186 99.38 True indel: indel (<= 5bp) 6046646 6047710 356249 357313 CM091754.1 scf7180000184186 99.62 True indel: indel (<= 5bp) 6047711 6051725 357315 361329 CM091754.1 scf7180000184186 99.95 True indel: indel (<= 5bp) 6051726 6053294 361331 362899 CM091754.1 scf7180000184186 99.94 True indel: indel (<= 5bp) 6053680 6054757 363290 364367 CM091754.1 scf7180000184186 99.44 True translocation, scaffold gap is present 1581257 1582169 365684 364772 CM091764.1 scf7180000184186 100.0 True CONTIG scf7180000184186 365684 misassembled 13536414 13537021 1 607 CM091758.1 scf7180000184187 99.84 True fake: scaffold gap size wrong estimation (local) 13538119 13551872 1803 15557 CM091758.1 scf7180000184187 99.92 True fake: scaffold gap size wrong estimation (local) 13556286 13557576 18517 19807 CM091758.1 scf7180000184187 97.52 True fake: scaffold gap size wrong estimation (local) 13557726 13570472 20249 32996 CM091758.1 scf7180000184187 99.8 True fake: scaffold gap size wrong estimation (local) 13573644 13597441 33484 57539 CM091758.1 scf7180000184187 98.72 True fake: scaffold gap size wrong estimation (local) 13597229 13641837 57931 102292 CM091758.1 scf7180000184187 99.37 True fake: scaffold gap size wrong estimation (local) 13642641 13712114 102476 171779 CM091758.1 scf7180000184187 98.39 True fake: scaffold gap size wrong estimation (local) 13713309 13759129 172862 218757 CM091758.1 scf7180000184187 99.67 True fake: scaffold gap size wrong estimation (local) 13759355 13760390 218862 219897 CM091758.1 scf7180000184187 99.81 True fake: scaffold gap size wrong estimation (local) 13763873 13764446 222922 223495 CM091758.1 scf7180000184187 96.17 True fake: scaffold gap size wrong estimation (local) 13765509 13766149 224669 225309 CM091758.1 scf7180000184187 99.69 True CONTIG scf7180000184187 227524 correct 5577372 5601889 1 24551 CM091763.1 scf7180000184188 99.29 True fake: scaffold gap size wrong estimation (local) 5602058 5622073 24697 44726 CM091763.1 scf7180000184188 99.13 True fake: scaffold gap size wrong estimation (local) 5622188 5627351 44768 49927 CM091763.1 scf7180000184188 99.34 True fake: scaffold gap size wrong estimation (local) 5627466 5750684 50024 172766 CM091763.1 scf7180000184188 99.29 True fake: scaffold gap size wrong estimation (local) 5750933 5782813 172918 204760 CM091763.1 scf7180000184188 99.08 True fake: scaffold gap size wrong estimation (local) 5782910 5839266 204856 260749 CM091763.1 scf7180000184188 98.78 True indel: stretch of mismatches 5839295 5851469 260778 273076 CM091763.1 scf7180000184188 98.61 True fake: scaffold gap size wrong estimation (local) 5850306 5931391 273112 354396 CM091763.1 scf7180000184188 98.7 True translocation, scaffold gap is present 1669676 1673438 354417 358182 CM091752.1 scf7180000184188 98.85 True fake: scaffold gap size wrong estimation (local) 1673569 1675119 358280 359830 CM091752.1 scf7180000184188 99.48 True fake: scaffold gap size wrong estimation (local) 1675246 1676384 359939 361077 CM091752.1 scf7180000184188 99.47 True indel: indel (> 5bp) 1676385 1678008 361092 362715 CM091752.1 scf7180000184188 98.4 True indel: indel (> 5bp) 1678030 1678754 362716 363440 CM091752.1 scf7180000184188 99.31 True indel: indel (<= 5bp) 1678870 1679484 363558 364172 CM091752.1 scf7180000184188 99.84 True indel: indel (<= 5bp) 1679485 1680479 364174 365168 CM091752.1 scf7180000184188 99.7 True indel: indel (<= 5bp) 1680480 1681307 365170 365997 CM091752.1 scf7180000184188 99.88 True indel: indel (<= 5bp) 1681311 1683090 365998 367777 CM091752.1 scf7180000184188 99.66 True local misassembly 1683908 1685640 368601 370333 CM091752.1 scf7180000184188 99.37 True indel: indel (<= 5bp) 1685641 1686470 370338 371167 CM091752.1 scf7180000184188 99.76 True indel: indel (<= 5bp) 1686472 1687715 371168 372411 CM091752.1 scf7180000184188 99.92 True indel: indel (> 5bp) 1687716 1689924 372418 374626 CM091752.1 scf7180000184188 99.73 True indel: stretch of mismatches 1690239 1692055 374941 376757 CM091752.1 scf7180000184188 99.94 True local misassembly 1694612 1696064 377639 379091 CM091752.1 scf7180000184188 99.52 True fake: scaffold gap size wrong estimation (local) 1696065 1696888 379109 379932 CM091752.1 scf7180000184188 99.64 True indel: indel (<= 5bp) 1696889 1697568 379936 380615 CM091752.1 scf7180000184188 99.12 True fake: scaffold gap size wrong estimation (local) 1698162 1698894 381169 381901 CM091752.1 scf7180000184188 99.32 True indel: indel (<= 5bp) 1698895 1699666 381903 382674 CM091752.1 scf7180000184188 100.0 True indel: indel (<= 5bp) 1699667 1700297 382676 383306 CM091752.1 scf7180000184188 99.84 True indel: indel (<= 5bp) 1700298 1704364 383309 387375 CM091752.1 scf7180000184188 99.83 True indel: indel (<= 5bp) 1704365 1706060 387381 389076 CM091752.1 scf7180000184188 99.71 True indel: indel (<= 5bp) 1706311 1707494 389329 390512 CM091752.1 scf7180000184188 99.66 True indel: indel (<= 5bp) 1707495 1708240 390514 391259 CM091752.1 scf7180000184188 100.0 True local misassembly 1709057 1710267 392077 393287 CM091752.1 scf7180000184188 99.34 True fake: scaffold gap size wrong estimation (local) 1710485 1711550 393475 394540 CM091752.1 scf7180000184188 99.72 True indel: indel (> 5bp) 1711577 1712403 394541 395367 CM091752.1 scf7180000184188 100.0 True indel: indel (<= 5bp) 1712737 1719154 395702 402119 CM091752.1 scf7180000184188 99.55 True indel: indel (<= 5bp) 1719157 1721904 402120 404867 CM091752.1 scf7180000184188 99.56 True indel: indel (<= 5bp) 1721905 1722852 404870 405817 CM091752.1 scf7180000184188 99.89 True fake: scaffold gap size wrong estimation (local) 1723275 1724850 406253 407828 CM091752.1 scf7180000184188 99.81 True indel: indel (<= 5bp) 1724851 1725635 407830 408614 CM091752.1 scf7180000184188 99.49 True fake: scaffold gap size wrong estimation (local) 1725636 1727206 408646 410216 CM091752.1 scf7180000184188 99.49 True fake: scaffold gap size wrong estimation (local) 1727207 1728037 410238 411068 CM091752.1 scf7180000184188 99.76 True indel: indel (> 5bp) 1728038 1729272 411079 412313 CM091752.1 scf7180000184188 99.19 True local misassembly 1729875 1732999 412917 416041 CM091752.1 scf7180000184188 99.71 True local misassembly 1734815 1736542 416277 418004 CM091752.1 scf7180000184188 99.36 True indel: indel (<= 5bp) 1736547 1738933 418005 420391 CM091752.1 scf7180000184188 99.79 True fake: scaffold gap size wrong estimation (local) 1738934 1739951 420584 421601 CM091752.1 scf7180000184188 99.8 True fake: scaffold gap size wrong estimation (local) 1741786 1749507 422891 430566 CM091752.1 scf7180000184188 98.74 True local misassembly 1750335 1757107 431364 438150 CM091752.1 scf7180000184188 99.21 True fake: scaffold gap size wrong estimation (local) 1757793 1758383 438830 439420 CM091752.1 scf7180000184188 99.83 True local misassembly 1759531 1761338 440227 442034 CM091752.1 scf7180000184188 99.28 True fake: scaffold gap size wrong estimation (local) 1762037 1794952 442462 474288 CM091752.1 scf7180000184188 96.04 True fake: scaffold gap size wrong estimation (local) 1795247 1796215 474437 475405 CM091752.1 scf7180000184188 99.79 True indel: indel (<= 5bp) 1796516 1799237 475709 478430 CM091752.1 scf7180000184188 99.89 True indel: indel (<= 5bp) 1799239 1799789 478431 478981 CM091752.1 scf7180000184188 99.46 True local misassembly 1801294 1802173 479883 480762 CM091752.1 scf7180000184188 99.09 True indel: indel (<= 5bp) 1802174 1803033 480764 481623 CM091752.1 scf7180000184188 99.77 True indel: indel (> 5bp) 1803044 1805898 481642 484496 CM091752.1 scf7180000184188 99.4 True indel: indel (<= 5bp) 1806260 1806791 484862 485393 CM091752.1 scf7180000184188 99.62 True fake: scaffold gap size wrong estimation (local) 1807129 1810197 485679 488742 CM091752.1 scf7180000184188 98.67 True fake: scaffold gap size wrong estimation (local) 1810708 1811691 489423 490406 CM091752.1 scf7180000184188 99.9 True indel: indel (> 5bp) 1811699 1813306 490407 492014 CM091752.1 scf7180000184188 98.63 True local misassembly 1814162 1815664 492160 493662 CM091752.1 scf7180000184188 99.6 True indel: indel (<= 5bp) 1815669 1816445 493663 494439 CM091752.1 scf7180000184188 99.61 True fake: scaffold gap size wrong estimation (local) 1817154 1818011 494896 495753 CM091752.1 scf7180000184188 98.14 True fake: scaffold gap size wrong estimation (local) 1818199 1819481 496225 497507 CM091752.1 scf7180000184188 99.45 True fake: scaffold gap size wrong estimation (local) 1820057 1829070 497778 506820 CM091752.1 scf7180000184188 99.44 True fake: scaffold gap size wrong estimation (local) 1829220 1836885 506990 514686 CM091752.1 scf7180000184188 98.76 True fake: not a misassembly (possible transposable element) 15686097 15686840 515430 514687 CM091757.1 scf7180000184188 99.87 True fake: not a misassembly (possible transposable element) 1837123 1844056 515502 522420 CM091752.1 scf7180000184188 98.59 True fake: scaffold gap size wrong estimation (local) 1844188 1845726 522530 524079 CM091752.1 scf7180000184188 98.84 True fake: scaffold gap size wrong estimation (local) 1846072 1847986 524482 526396 CM091752.1 scf7180000184188 99.43 True local misassembly 1848866 1850242 527108 528486 CM091752.1 scf7180000184188 98.84 True fake: scaffold gap size wrong estimation (local) 1852698 1864812 529667 541788 CM091752.1 scf7180000184188 99.55 True fake: scaffold gap size wrong estimation (local) 1865065 1883624 541941 560579 CM091752.1 scf7180000184188 99.17 True fake: scaffold gap size wrong estimation (local) 1883991 1891632 560942 568599 CM091752.1 scf7180000184188 98.7 True fake: scaffold gap size wrong estimation (local) 1891734 1932150 568706 607451 CM091752.1 scf7180000184188 95.0 True local misassembly 1933669 1935002 607975 609308 CM091752.1 scf7180000184188 99.4 True local misassembly 1935730 1936789 610044 611103 CM091752.1 scf7180000184188 99.72 True local misassembly 1937711 1939436 611792 613517 CM091752.1 scf7180000184188 99.71 True indel: indel (<= 5bp) 1939437 1940138 613519 614220 CM091752.1 scf7180000184188 99.57 True indel: indel (> 5bp) 1940531 1942303 614606 616378 CM091752.1 scf7180000184188 98.65 True fake: scaffold gap size wrong estimation (local) 1944371 1945597 616629 617855 CM091752.1 scf7180000184188 98.94 True indel: indel (<= 5bp) 1945627 1946503 617889 618765 CM091752.1 scf7180000184188 99.43 True local misassembly 1947175 1948036 619443 620304 CM091752.1 scf7180000184188 99.07 True indel: indel (> 5bp) 1948166 1949134 620427 621395 CM091752.1 scf7180000184188 99.79 True indel: indel (<= 5bp) 1949135 1950066 621397 622328 CM091752.1 scf7180000184188 98.5 True local misassembly 1950987 1952078 623203 624294 CM091752.1 scf7180000184188 99.82 True indel: indel (<= 5bp) 1952079 1954336 624296 626553 CM091752.1 scf7180000184188 99.78 True indel: indel (<= 5bp) 1954337 1955537 626558 627758 CM091752.1 scf7180000184188 99.5 True relocation, inconsistency = -440418 1516012 1519748 628651 632388 CM091752.1 scf7180000184188 99.46 True local misassembly 1520812 1521833 632570 633597 CM091752.1 scf7180000184188 97.67 True indel: indel (> 5bp) 1521973 1529182 633683 640878 CM091752.1 scf7180000184188 98.84 True fake: scaffold gap size wrong estimation (local) 1529391 1530658 641059 642326 CM091752.1 scf7180000184188 98.9 True fake: scaffold gap size wrong estimation (local) 1530997 1532533 642652 644191 CM091752.1 scf7180000184188 98.7 True fake: scaffold gap size wrong estimation (local) 1534546 1535471 645202 646127 CM091752.1 scf7180000184188 99.68 True indel: indel (> 5bp) 1535472 1536312 646143 646983 CM091752.1 scf7180000184188 97.86 True local misassembly 1536473 1537060 646984 647571 CM091752.1 scf7180000184188 97.96 True local misassembly 1537734 1540141 647572 649979 CM091752.1 scf7180000184188 99.67 True indel: indel (<= 5bp) 1540142 1540650 649981 650489 CM091752.1 scf7180000184188 98.43 True local misassembly 1542236 1543157 651067 651988 CM091752.1 scf7180000184188 99.78 True fake: scaffold gap size wrong estimation (local) 1543158 1545041 652007 653890 CM091752.1 scf7180000184188 98.83 True fake: scaffold gap size wrong estimation (local) 1545184 1558889 653995 667229 CM091752.1 scf7180000184188 95.71 True local misassembly 1560524 1561704 668539 669719 CM091752.1 scf7180000184188 99.66 True local misassembly 1562949 1564725 669893 671669 CM091752.1 scf7180000184188 98.65 True local misassembly 1566377 1567086 672172 672881 CM091752.1 scf7180000184188 99.3 True indel: indel (> 5bp) 1567443 1568308 673215 674080 CM091752.1 scf7180000184188 99.54 True fake: scaffold gap size wrong estimation (local) 1568382 1569209 674677 675504 CM091752.1 scf7180000184188 99.52 True indel: indel (<= 5bp) 1569210 1570251 675506 676547 CM091752.1 scf7180000184188 99.52 True fake: scaffold gap size wrong estimation (local) 1570886 1571680 677744 678538 CM091752.1 scf7180000184188 99.75 True indel: indel (<= 5bp) 1571681 1572757 678540 679616 CM091752.1 scf7180000184188 98.7 True fake: scaffold gap size wrong estimation (local) 1573657 1574440 680492 681275 CM091752.1 scf7180000184188 97.19 True indel: indel (<= 5bp) 1574441 1575952 681277 682788 CM091752.1 scf7180000184188 99.67 True indel: indel (<= 5bp) 1575953 1577300 682790 684137 CM091752.1 scf7180000184188 99.7 True local misassembly 1579457 1580776 685525 686844 CM091752.1 scf7180000184188 99.85 True indel: indel (> 5bp) 1581153 1582219 687232 688298 CM091752.1 scf7180000184188 99.34 True indel: indel (<= 5bp) 1582225 1584869 688299 690943 CM091752.1 scf7180000184188 99.51 True local misassembly 1585308 1586060 690944 691696 CM091752.1 scf7180000184188 96.55 True fake: scaffold gap size wrong estimation (local) 1588552 1589184 693466 694098 CM091752.1 scf7180000184188 99.84 True local misassembly 1594279 1597557 697892 701167 CM091752.1 scf7180000184188 98.99 True local misassembly 1598790 1600587 701516 703313 CM091752.1 scf7180000184188 98.89 True local misassembly 1601271 1602143 704003 704875 CM091752.1 scf7180000184188 98.85 True fake: scaffold gap size wrong estimation (local) 1602248 1603179 704972 705903 CM091752.1 scf7180000184188 98.39 True fake: scaffold gap size wrong estimation (local) 1604520 1628831 706575 729951 CM091752.1 scf7180000184188 95.4 True translocation, scaffold gap is present 15680225 15682932 734142 731446 CM091757.1 scf7180000184188 99.52 True CONTIG scf7180000184188 734142 misassembled 4382744 4385721 2975 1 CM091753.1 scf7180000184189 99.6 True fake: scaffold gap size wrong estimation (local) 4293659 4382360 91474 3264 CM091753.1 scf7180000184189 98.35 True translocation, scaffold gap is present 3359350 3359882 92802 92270 CM091754.1 scf7180000184189 99.62 True indel: indel (<= 5bp) 3357524 3359349 94631 92806 CM091754.1 scf7180000184189 99.45 True fake: scaffold gap size wrong estimation (local) 3356213 3357197 95768 94784 CM091754.1 scf7180000184189 99.8 True indel: indel (<= 5bp) 3355653 3356212 96330 95771 CM091754.1 scf7180000184189 95.89 True local misassembly 3354715 3355412 97028 96331 CM091754.1 scf7180000184189 99.14 True indel: indel (<= 5bp) 3353418 3354713 98324 97029 CM091754.1 scf7180000184189 99.85 True indel: indel (> 5bp) 3352193 3353233 99543 98503 CM091754.1 scf7180000184189 98.75 True indel: indel (> 5bp) 3350684 3352192 101059 99551 CM091754.1 scf7180000184189 99.73 True indel: indel (> 5bp) 3349578 3350683 102210 101105 CM091754.1 scf7180000184189 98.92 True fake: scaffold gap size wrong estimation (local) 3347785 3348902 103923 102806 CM091754.1 scf7180000184189 98.93 True fake: scaffold gap size wrong estimation (local) 3345414 3346661 106414 105160 CM091754.1 scf7180000184189 97.46 True local misassembly 3294833 3344952 155513 106602 CM091754.1 scf7180000184189 96.48 True fake: scaffold gap size wrong estimation (local) 3292348 3294465 157776 155657 CM091754.1 scf7180000184189 98.58 True indel: indel (> 5bp) 3287099 3292097 163035 158020 CM091754.1 scf7180000184189 99.38 True fake: scaffold gap size wrong estimation (local) 3283647 3285750 166144 164041 CM091754.1 scf7180000184189 99.24 True local misassembly 3279993 3282271 168768 166490 CM091754.1 scf7180000184189 99.39 True indel: indel (<= 5bp) 3278851 3279992 169911 168770 CM091754.1 scf7180000184189 99.74 True indel: indel (<= 5bp) 3278270 3278850 170495 169915 CM091754.1 scf7180000184189 99.66 True local misassembly 3275868 3276703 171331 170496 CM091754.1 scf7180000184189 99.28 True indel: indel (<= 5bp) 3274460 3275867 172740 171333 CM091754.1 scf7180000184189 99.93 True indel: indel (<= 5bp) 3273832 3274458 173367 172741 CM091754.1 scf7180000184189 99.04 True indel: indel (<= 5bp) 3272026 3273475 175175 173726 CM091754.1 scf7180000184189 99.38 True indel: indel (> 5bp) 3271038 3271540 176169 175667 CM091754.1 scf7180000184189 99.01 True indel: indel (<= 5bp) 3269074 3270714 178131 176491 CM091754.1 scf7180000184189 99.76 True fake: scaffold gap size wrong estimation (local) 3266242 3269045 180994 178191 CM091754.1 scf7180000184189 99.64 True fake: scaffold gap size wrong estimation (local) 3257362 3265746 189639 181262 CM091754.1 scf7180000184189 98.7 True indel: indel (> 5bp) 3255079 3257301 191967 189742 CM091754.1 scf7180000184189 98.4 True local misassembly 3246488 3253526 199001 191968 CM091754.1 scf7180000184189 98.41 True fake: scaffold gap size wrong estimation (local) 3244555 3246206 200755 199104 CM091754.1 scf7180000184189 99.52 True indel: indel (> 5bp) 3238310 3244174 207032 201167 CM091754.1 scf7180000184189 99.46 True translocation 7708929 7716290 214358 207033 CM091765.1 scf7180000184189 98.89 True fake: scaffold gap size wrong estimation (local) 7707461 7708666 215818 214613 CM091765.1 scf7180000184189 99.0 True local misassembly 7705260 7706235 217288 216313 CM091765.1 scf7180000184189 99.59 True indel: indel (> 5bp) 7703993 7705253 218549 217289 CM091765.1 scf7180000184189 99.44 True indel: indel (> 5bp) 7701207 7703992 221363 218578 CM091765.1 scf7180000184189 98.99 True indel: indel (<= 5bp) 7700177 7701206 222395 221366 CM091765.1 scf7180000184189 99.32 True indel: indel (> 5bp) 7699343 7700176 223253 222420 CM091765.1 scf7180000184189 99.64 True local misassembly 7697855 7698813 224757 223799 CM091765.1 scf7180000184189 97.08 True fake: scaffold gap size wrong estimation (local) 7690359 7697518 232217 225050 CM091765.1 scf7180000184189 99.29 True fake: scaffold gap size wrong estimation (local) 7686200 7689895 236079 232380 CM091765.1 scf7180000184189 98.76 True fake: scaffold gap size wrong estimation (local) 7682485 7685889 239578 236241 CM091765.1 scf7180000184189 96.71 True fake: scaffold gap size wrong estimation (local) 7666926 7682394 255000 239715 CM091765.1 scf7180000184189 97.61 True fake: scaffold gap size wrong estimation (local) 7644728 7666305 277097 255358 CM091765.1 scf7180000184189 98.21 True fake: scaffold gap size wrong estimation (local) 7626904 7643976 294686 277844 CM091765.1 scf7180000184189 97.23 True indel: indel (> 5bp) 7615350 7626876 306292 294726 CM091765.1 scf7180000184189 98.97 True indel: indel (> 5bp) 7560787 7615198 360071 306430 CM091765.1 scf7180000184189 96.85 True fake: scaffold gap size wrong estimation (local) 7549677 7560601 371136 360167 CM091765.1 scf7180000184189 99.28 True fake: scaffold gap size wrong estimation (local) 7536758 7549262 383739 371309 CM091765.1 scf7180000184189 98.55 True indel: indel (> 5bp) 7359621 7536723 560420 383800 CM091765.1 scf7180000184189 99.2 True fake: scaffold gap size wrong estimation (local) 7306012 7358971 613394 560484 CM091765.1 scf7180000184189 99.06 True fake: scaffold gap size wrong estimation (local) 7288269 7305752 631540 613600 CM091765.1 scf7180000184189 97.27 True fake: scaffold gap size wrong estimation (local) 7251353 7288124 668422 631636 CM091765.1 scf7180000184189 99.13 True indel: indel (> 5bp) 7249764 7251154 670020 668630 CM091765.1 scf7180000184189 99.86 True fake: scaffold gap size wrong estimation (local) 7249097 7249763 671026 670360 CM091765.1 scf7180000184189 99.85 True fake: scaffold gap size wrong estimation (local) 7244964 7247394 673948 671514 CM091765.1 scf7180000184189 98.51 True fake: scaffold gap size wrong estimation (local) 7237030 7243527 681318 674828 CM091765.1 scf7180000184189 98.86 True fake: not a misassembly (possible transposable element) 6643244 6644698 681346 682799 CM091767.1 scf7180000184189 97.4 True fake: not a misassembly (possible transposable element) 7157907 7233355 758501 683092 CM091765.1 scf7180000184189 99.54 True fake: scaffold gap size wrong estimation (local) 7142405 7157767 773971 758553 CM091765.1 scf7180000184189 99.67 True indel: indel (<= 5bp) 7117177 7142361 799025 774020 CM091765.1 scf7180000184189 98.37 True fake: scaffold gap size wrong estimation (local) 7076551 7116969 839749 799139 CM091765.1 scf7180000184189 97.71 True fake: scaffold gap size wrong estimation (local) 7072254 7074529 843027 840752 CM091765.1 scf7180000184189 99.91 True indel: stretch of mismatches 7071293 7072040 843988 843241 CM091765.1 scf7180000184189 99.87 True indel: indel (<= 5bp) 7069266 7071292 846016 843990 CM091765.1 scf7180000184189 99.8 True indel: indel (> 5bp) 7068474 7069245 846842 846071 CM091765.1 scf7180000184189 99.74 True indel: indel (> 5bp) 7061835 7068460 853468 846843 CM091765.1 scf7180000184189 99.61 True local misassembly 7054995 7056531 855100 853564 CM091765.1 scf7180000184189 99.02 True local misassembly 7052494 7053590 857600 856504 CM091765.1 scf7180000184189 98.72 True indel: indel (<= 5bp) 7049946 7052493 860149 857602 CM091765.1 scf7180000184189 99.41 True indel: indel (<= 5bp) 7048259 7049837 861838 860260 CM091765.1 scf7180000184189 99.87 True indel: indel (<= 5bp) 7046571 7048257 863525 861839 CM091765.1 scf7180000184189 99.53 True indel: indel (> 5bp) 7043727 7046286 866362 863803 CM091765.1 scf7180000184189 99.92 True indel: indel (<= 5bp) 7042830 7043725 867258 866363 CM091765.1 scf7180000184189 99.55 True indel: indel (<= 5bp) 7042021 7042827 868065 867259 CM091765.1 scf7180000184189 99.63 True indel: indel (<= 5bp) 7037461 7042020 872628 868069 CM091765.1 scf7180000184189 99.74 True indel: indel (<= 5bp) 7035591 7037053 874500 873038 CM091765.1 scf7180000184189 99.86 True indel: indel (<= 5bp) 7034764 7035589 875326 874501 CM091765.1 scf7180000184189 99.88 True indel: indel (<= 5bp) 7029875 7034763 880216 875328 CM091765.1 scf7180000184189 99.98 True indel: indel (<= 5bp) 7026826 7029874 883266 880218 CM091765.1 scf7180000184189 100.0 True indel: indel (<= 5bp) 7023768 7026825 886325 883268 CM091765.1 scf7180000184189 99.87 True indel: indel (<= 5bp) 7022065 7023767 888029 886327 CM091765.1 scf7180000184189 99.94 True indel: indel (<= 5bp) 7020821 7022061 889270 888030 CM091765.1 scf7180000184189 100.0 True indel: indel (<= 5bp) 7019490 7020820 890602 889272 CM091765.1 scf7180000184189 99.77 True indel: indel (<= 5bp) 7016981 7019489 893112 890604 CM091765.1 scf7180000184189 99.96 True indel: indel (<= 5bp) 7016038 7016980 894056 893114 CM091765.1 scf7180000184189 99.89 True indel: indel (> 5bp) 7011889 7016025 898193 894057 CM091765.1 scf7180000184189 99.85 True indel: indel (<= 5bp) 7011034 7011888 899049 898195 CM091765.1 scf7180000184189 99.88 True local misassembly 7009162 7009887 900942 900217 CM091765.1 scf7180000184189 99.59 True indel: indel (<= 5bp) 7006108 7009161 903997 900944 CM091765.1 scf7180000184189 99.8 True indel: indel (<= 5bp) 7004936 7006008 905172 904100 CM091765.1 scf7180000184189 99.63 True indel: indel (> 5bp) 7003489 7004443 906609 905655 CM091765.1 scf7180000184189 99.9 True indel: indel (<= 5bp) 7002534 7003487 907563 906610 CM091765.1 scf7180000184189 100.0 True indel: indel (<= 5bp) 7001968 7002533 908130 907565 CM091765.1 scf7180000184189 99.82 True indel: indel (> 5bp) 7000033 7001827 910046 908252 CM091765.1 scf7180000184189 99.83 True indel: indel (<= 5bp) 6997226 7000031 912852 910047 CM091765.1 scf7180000184189 99.68 True local misassembly 6996033 6996657 914045 913421 CM091765.1 scf7180000184189 99.68 True indel: indel (<= 5bp) 6995490 6996032 914590 914048 CM091765.1 scf7180000184189 99.82 True indel: indel (<= 5bp) 6994959 6995489 915123 914593 CM091765.1 scf7180000184189 99.81 True indel: indel (<= 5bp) 6993523 6994958 916564 915129 CM091765.1 scf7180000184189 99.93 True fake: scaffold gap size wrong estimation (local) 6745303 6993302 1164210 916676 CM091765.1 scf7180000184189 99.22 True fake: scaffold gap size wrong estimation (local) 6612381 6745172 1296303 1164311 CM091765.1 scf7180000184189 98.88 True fake: scaffold gap size wrong estimation (local) 6559075 6612283 1348755 1296392 CM091765.1 scf7180000184189 97.83 True indel: indel (<= 5bp) 6547595 6559044 1360255 1348783 CM091765.1 scf7180000184189 99.3 True indel: indel (<= 5bp) 6539470 6547544 1368398 1360302 CM091765.1 scf7180000184189 99.48 True fake: scaffold gap size wrong estimation (local) 6530495 6539398 1377418 1368511 CM091765.1 scf7180000184189 99.76 True fake: scaffold gap size wrong estimation (local) 6482252 6530276 1425573 1377541 CM091765.1 scf7180000184189 99.56 True fake: scaffold gap size wrong estimation (local) 6281705 6482048 1626350 1425797 CM091765.1 scf7180000184189 99.58 True fake: scaffold gap size wrong estimation (local) 6249497 6280922 1658399 1626913 CM091765.1 scf7180000184189 99.39 True fake: scaffold gap size wrong estimation (local) 6188013 6249335 1719897 1658558 CM091765.1 scf7180000184189 99.59 True fake: scaffold gap size wrong estimation (local) 6178497 6187298 1728897 1720093 CM091765.1 scf7180000184189 99.42 True fake: scaffold gap size wrong estimation (local) 6158644 6178374 1748452 1729009 CM091765.1 scf7180000184189 98.2 True fake: scaffold gap size wrong estimation (local) 5997733 6157571 1908893 1749051 CM091765.1 scf7180000184189 99.46 True indel: indel (<= 5bp) 5910301 5997671 1996383 1908956 CM091765.1 scf7180000184189 99.56 True CONTIG scf7180000184189 1996467 misassembled 11017105 11018312 1181 2388 CM091766.1 scf7180000184190 97.52 True fake: scaffold gap size wrong estimation (local) 11018825 11044790 2547 28529 CM091766.1 scf7180000184190 99.64 True indel: indel (<= 5bp) 11044856 11061160 28591 45082 CM091766.1 scf7180000184190 98.51 True relocation, scaffold gap is present, inconsistency = 63472 11125638 11128856 49236 46088 CM091766.1 scf7180000184190 97.25 True fake: scaffold gap size wrong estimation (local) 11061620 11125876 113766 49750 CM091766.1 scf7180000184190 99.46 True CONTIG scf7180000184190 113766 misassembled 11195040 11196068 1029 1 CM091766.1 scf7180000184191 100.0 True fake: scaffold gap size wrong estimation (local) 11192424 11194291 3958 2052 CM091766.1 scf7180000184191 99.62 True fake: scaffold gap size wrong estimation (local) 11174010 11191747 21507 3979 CM091766.1 scf7180000184191 98.28 True fake: scaffold gap size wrong estimation (local) 11156106 11173409 39124 21812 CM091766.1 scf7180000184191 99.6 True fake: scaffold gap size wrong estimation (local) 11135292 11155201 59582 39691 CM091766.1 scf7180000184191 99.51 True fake: scaffold gap size wrong estimation (local) 11134022 11134824 60564 59762 CM091766.1 scf7180000184191 99.75 True fake: scaffold gap size wrong estimation (local) 11132857 11133563 62065 61359 CM091766.1 scf7180000184191 99.86 True translocation, scaffold gap is present 3174634 3176059 64543 63118 CM091752.1 scf7180000184191 99.93 True relocation, scaffold gap is present, inconsistency = 22518 3149088 3149672 67571 66987 CM091752.1 scf7180000184191 100.0 True fake: scaffold gap size wrong estimation (local) 3146164 3147516 69509 68157 CM091752.1 scf7180000184191 100.0 True fake: scaffold gap size wrong estimation (local) 3144383 3145401 70833 69854 CM091752.1 scf7180000184191 95.61 True translocation, scaffold gap is present 437455 467735 75146 105436 CM091755.1 scf7180000184191 99.7 True fake: scaffold gap size wrong estimation (local) 468226 517276 105885 154753 CM091755.1 scf7180000184191 99.53 True fake: not a misassembly (possible transposable element) 6863794 6865871 154774 156866 CM091757.1 scf7180000184191 98.76 True fake: not a misassembly (possible transposable element) 517415 518760 156898 158243 CM091755.1 scf7180000184191 100.0 True translocation, scaffold gap is present 6865989 6884650 158264 176980 CM091757.1 scf7180000184191 99.19 True indel: indel (> 5bp) 6884688 7055448 177084 345755 CM091757.1 scf7180000184191 97.94 True indel: indel (> 5bp) 7055561 7064910 345910 355262 CM091757.1 scf7180000184191 98.98 True indel: indel (> 5bp) 7064966 7065916 355311 356264 CM091757.1 scf7180000184191 99.37 True indel: indel (> 5bp) 7066040 7076260 356424 366649 CM091757.1 scf7180000184191 99.25 True fake: scaffold gap size wrong estimation (local) 7076428 7081711 366815 372115 CM091757.1 scf7180000184191 99.3 True fake: scaffold gap size wrong estimation (local) 7082194 7116659 372283 406648 CM091757.1 scf7180000184191 99.45 True CONTIG scf7180000184191 406727 misassembled 5190713 5191317 1 605 CM091768.1 scf7180000184192 100.0 True fake: scaffold gap size wrong estimation (local) 5192315 5193139 1691 2515 CM091768.1 scf7180000184192 99.27 True fake: scaffold gap size wrong estimation (local) 5194104 5195824 3174 4895 CM091768.1 scf7180000184192 99.83 True fake: scaffold gap size wrong estimation (local) 5195931 5197109 5174 6352 CM091768.1 scf7180000184192 99.92 True fake: scaffold gap size wrong estimation (local) 5199891 5201130 7448 8687 CM091768.1 scf7180000184192 100.0 True translocation, scaffold gap is present 16064595 16065435 10191 11031 CM091757.1 scf7180000184192 98.22 True fake: scaffold gap size wrong estimation (local) 16066167 16068316 11700 13849 CM091757.1 scf7180000184192 99.95 True indel: indel (<= 5bp) 16068317 16069113 13851 14647 CM091757.1 scf7180000184192 99.75 True local misassembly 16073931 16077321 14648 18038 CM091757.1 scf7180000184192 99.41 True translocation, scaffold gap is present 2978780 2982548 18281 21900 CM091752.1 scf7180000184192 95.79 True fake: scaffold gap size wrong estimation (local) 2982930 2983505 22312 22887 CM091752.1 scf7180000184192 99.13 True fake: scaffold gap size wrong estimation (local) 2983830 2984395 23061 23626 CM091752.1 scf7180000184192 100.0 True indel: indel (<= 5bp) 2984791 2986479 24024 25712 CM091752.1 scf7180000184192 99.94 True fake: scaffold gap size wrong estimation (local) 2987622 2988544 26660 27582 CM091752.1 scf7180000184192 96.97 True local misassembly 2988712 2989792 27653 28733 CM091752.1 scf7180000184192 99.07 True indel: indel (<= 5bp) 2989793 2990300 28736 29243 CM091752.1 scf7180000184192 98.43 True local misassembly 2991239 2992521 30169 31451 CM091752.1 scf7180000184192 97.9 True fake: scaffold gap size wrong estimation (local) 2996231 2996947 35234 35955 CM091752.1 scf7180000184192 97.88 True translocation, scaffold gap is present 4751107 4758476 43375 36006 CM091754.1 scf7180000184192 99.97 True fake: scaffold gap size wrong estimation (local) 4738801 4750498 55393 43698 CM091754.1 scf7180000184192 99.98 True fake: scaffold gap size wrong estimation (local) 4737688 4738270 56399 55823 CM091754.1 scf7180000184192 97.6 True fake: not a misassembly (possible transposable element) 8893790 8894451 57111 56450 CM091767.1 scf7180000184192 99.09 True fake: not a misassembly (possible transposable element) 4702065 4737183 92515 57455 CM091754.1 scf7180000184192 99.82 True fake: scaffold gap size wrong estimation (local) 4700847 4701444 94140 93543 CM091754.1 scf7180000184192 99.83 True fake: scaffold gap size wrong estimation (local) 4696985 4698286 97239 95938 CM091754.1 scf7180000184192 100.0 True fake: scaffold gap size wrong estimation (local) 4694673 4695355 100026 99344 CM091754.1 scf7180000184192 98.24 True fake: scaffold gap size wrong estimation (local) 4689790 4690974 102522 101338 CM091754.1 scf7180000184192 100.0 True translocation, scaffold gap is present 1935992 1937321 103375 104704 CM091759.1 scf7180000184192 98.5 True translocation, scaffold gap is present 4665544 4667182 109351 107713 CM091754.1 scf7180000184192 100.0 True fake: scaffold gap size wrong estimation (local) 4662586 4665196 113038 110428 CM091754.1 scf7180000184192 99.89 True indel: indel (> 5bp) 4661028 4662585 114628 113071 CM091754.1 scf7180000184192 97.75 True fake: scaffold gap size wrong estimation (local) 4644926 4654811 124864 115295 CM091754.1 scf7180000184192 96.36 True translocation, scaffold gap is present 3411349 3412120 127452 126652 CM091752.1 scf7180000184192 97.19 True relocation, scaffold gap is present, inconsistency = -66197 3460649 3477254 144316 127744 CM091752.1 scf7180000184192 99.58 True relocation, inconsistency = 27733 3432331 3432915 144317 144901 CM091752.1 scf7180000184192 99.83 True relocation, scaffold gap is present, inconsistency = -432113 3000860 3001436 144959 145535 CM091752.1 scf7180000184192 98.44 True relocation, scaffold gap is present, inconsistency = 422567 3424024 3426964 148382 145556 CM091752.1 scf7180000184192 95.89 True fake: scaffold gap size wrong estimation (local) 3420127 3423693 153413 149848 CM091752.1 scf7180000184192 99.69 True fake: not a misassembly (possible transposable element) 15704196 15704926 153414 154137 CM091753.1 scf7180000184192 98.29 True fake: not a misassembly (possible transposable element) 3419020 3420107 155883 154796 CM091752.1 scf7180000184192 97.61 True local misassembly 3416755 3418183 157595 156167 CM091752.1 scf7180000184192 99.86 True fake: scaffold gap size wrong estimation (local) 3414845 3416618 159996 158223 CM091752.1 scf7180000184192 99.83 True fake: not a misassembly (possible transposable element) 5205696 5206377 160373 161054 CM091768.1 scf7180000184192 95.75 True fake: not a misassembly (possible transposable element) 3413034 3413657 161971 161347 CM091752.1 scf7180000184192 99.2 True fake: not a misassembly (possible transposable element) 5207182 5210482 161992 165292 CM091768.1 scf7180000184192 100.0 True fake: not a misassembly (possible transposable element) 3402788 3407111 169632 165313 CM091752.1 scf7180000184192 99.65 True fake: scaffold gap size wrong estimation (local) 3400945 3401581 170484 169848 CM091752.1 scf7180000184192 98.43 True indel: indel (> 5bp) 3400345 3400944 171090 170491 CM091752.1 scf7180000184192 99.67 True translocation, scaffold gap is present 16284274 16285086 171355 172167 CM091757.1 scf7180000184192 98.28 True translocation, scaffold gap is present 3204939 3214251 176416 185384 CM091752.1 scf7180000184192 95.49 True relocation, inconsistency = -23126 3191126 3192313 185385 186572 CM091752.1 scf7180000184192 99.77 True translocation 9361931 9365223 186573 189865 CM091767.1 scf7180000184192 99.91 True fake: scaffold gap size wrong estimation (local) 9365224 9365818 190061 190655 CM091767.1 scf7180000184192 100.0 True fake: scaffold gap size wrong estimation (local) 9366215 9367211 191661 192657 CM091767.1 scf7180000184192 99.8 True indel: indel (<= 5bp) 9367212 9369963 192662 195413 CM091767.1 scf7180000184192 99.16 True fake: scaffold gap size wrong estimation (local) 9371952 9373061 197296 198405 CM091767.1 scf7180000184192 97.3 True CONTIG scf7180000184192 198405 misassembled 19938767 19940373 1646 2 CM091751.1 scf7180000184193 96.84 True fake: scaffold gap size wrong estimation (local) 19934416 19938508 5991 1855 CM091751.1 scf7180000184193 97.14 True indel: indel (> 5bp) 19931703 19934342 8675 6087 CM091751.1 scf7180000184193 96.97 True fake: scaffold gap size wrong estimation (local) 19928181 19931592 12154 8762 CM091751.1 scf7180000184193 98.95 True fake: scaffold gap size wrong estimation (local) 19926493 19927926 13729 12296 CM091751.1 scf7180000184193 99.51 True local misassembly 19925112 19925855 15054 14311 CM091751.1 scf7180000184193 99.46 True indel: indel (<= 5bp) 19924390 19925071 15772 15091 CM091751.1 scf7180000184193 99.12 True local misassembly 19922934 19923580 17229 16583 CM091751.1 scf7180000184193 99.69 True fake: scaffold gap size wrong estimation (local) 19920004 19921417 20436 19023 CM091751.1 scf7180000184193 96.25 True local misassembly 19918747 19919731 21570 20586 CM091751.1 scf7180000184193 99.39 True indel: indel (> 5bp) 19917152 19918276 23184 22060 CM091751.1 scf7180000184193 98.84 True fake: scaffold gap size wrong estimation (local) 19915859 19916750 24245 23354 CM091751.1 scf7180000184193 99.66 True indel: indel (> 5bp) 19914352 19915352 25736 24736 CM091751.1 scf7180000184193 99.7 True local misassembly 19913111 19913786 26973 26298 CM091751.1 scf7180000184193 99.41 True local misassembly 19909339 19912493 30454 27300 CM091751.1 scf7180000184193 99.37 True indel: indel (<= 5bp) 19908780 19909337 31012 30455 CM091751.1 scf7180000184193 99.28 True local misassembly 19906525 19907280 33282 32527 CM091751.1 scf7180000184193 99.34 True fake: scaffold gap size wrong estimation (local) 19902224 19906284 37542 33476 CM091751.1 scf7180000184193 99.16 True fake: scaffold gap size wrong estimation (local) 19883051 19901586 56222 37726 CM091751.1 scf7180000184193 99.28 True fake: scaffold gap size wrong estimation (local) 19880875 19882786 58382 56428 CM091751.1 scf7180000184193 98.24 True fake: scaffold gap size wrong estimation (local) 19867101 19880564 71790 58567 CM091751.1 scf7180000184193 96.84 True fake: scaffold gap size wrong estimation (local) 19864506 19866920 74361 71935 CM091751.1 scf7180000184193 97.5 True fake: scaffold gap size wrong estimation (local) 19863433 19864340 75435 74550 CM091751.1 scf7180000184193 97.47 True fake: not a misassembly (possible transposable element) 19862169 19862669 75464 75964 CM091751.1 scf7180000184193 99.0 True fake: not a misassembly (possible transposable element) 19859788 19861894 78111 76005 CM091751.1 scf7180000184193 99.29 True local misassembly 19857857 19858443 79057 78471 CM091751.1 scf7180000184193 97.96 True indel: indel (<= 5bp) 19856962 19857856 79954 79060 CM091751.1 scf7180000184193 99.33 True fake: scaffold gap size wrong estimation (local) 19854154 19855521 82467 81102 CM091751.1 scf7180000184193 99.49 True fake: scaffold gap size wrong estimation (local) 19844399 19854000 91958 82616 CM091751.1 scf7180000184193 96.32 True fake: scaffold gap size wrong estimation (local) 19842539 19844065 93558 92032 CM091751.1 scf7180000184193 98.82 True fake: scaffold gap size wrong estimation (local) 19839620 19842195 96389 93832 CM091751.1 scf7180000184193 98.29 True fake: scaffold gap size wrong estimation (local) 19836375 19838981 99766 97176 CM091751.1 scf7180000184193 97.63 True fake: scaffold gap size wrong estimation (local) 19833969 19835706 101910 100183 CM091751.1 scf7180000184193 98.56 True fake: scaffold gap size wrong estimation (local) 19832363 19833304 103456 102515 CM091751.1 scf7180000184193 97.03 True local misassembly 19829853 19831769 105634 103718 CM091751.1 scf7180000184193 99.27 True fake: scaffold gap size wrong estimation (local) 19827629 19828287 107861 107203 CM091751.1 scf7180000184193 99.7 True local misassembly 19824637 19825724 110237 109150 CM091751.1 scf7180000184193 98.9 True indel: indel (<= 5bp) 19823547 19824635 111326 110238 CM091751.1 scf7180000184193 99.63 True fake: scaffold gap size wrong estimation (local) 19822057 19822574 112589 112072 CM091751.1 scf7180000184193 99.42 True local misassembly 19820973 19821498 113678 113153 CM091751.1 scf7180000184193 99.81 True indel: indel (<= 5bp) 19820260 19820972 114392 113680 CM091751.1 scf7180000184193 99.3 True indel: indel (<= 5bp) 19818900 19819764 115757 114893 CM091751.1 scf7180000184193 99.88 True fake: scaffold gap size wrong estimation (local) 19817291 19818242 117386 116435 CM091751.1 scf7180000184193 99.79 True fake: not a misassembly (possible transposable element) 9271856 9277187 122718 117405 CM091756.1 scf7180000184193 98.35 True fake: not a misassembly (possible transposable element) 19815909 19816583 123998 123324 CM091751.1 scf7180000184193 98.82 True fake: scaffold gap size wrong estimation (local) 19814313 19814850 125355 124818 CM091751.1 scf7180000184193 99.63 True indel: indel (<= 5bp) 19813718 19814312 125951 125357 CM091751.1 scf7180000184193 99.33 True local misassembly 19811983 19812573 127683 127093 CM091751.1 scf7180000184193 100.0 True fake: scaffold gap size wrong estimation (local) 19808391 19809089 130777 130079 CM091751.1 scf7180000184193 96.85 True local misassembly 19806497 19807206 131930 131221 CM091751.1 scf7180000184193 96.34 True local misassembly 19805695 19806364 132600 131931 CM091751.1 scf7180000184193 98.51 True local misassembly 19802395 19803192 135924 135127 CM091751.1 scf7180000184193 99.25 True fake: scaffold gap size wrong estimation (local) 19800902 19801901 137379 136380 CM091751.1 scf7180000184193 100.0 True indel: indel (<= 5bp) 19800038 19800901 138244 137381 CM091751.1 scf7180000184193 99.88 True indel: indel (<= 5bp) 19799048 19800035 139232 138245 CM091751.1 scf7180000184193 99.39 True indel: indel (> 5bp) 19782603 19798980 155292 139326 CM091751.1 scf7180000184193 95.64 True fake: scaffold gap size wrong estimation (local) 19781073 19781926 156587 155736 CM091751.1 scf7180000184193 99.53 True fake: scaffold gap size wrong estimation (local) 19779378 19780816 158438 156997 CM091751.1 scf7180000184193 99.24 True fake: scaffold gap size wrong estimation (local) 19719529 19779121 217184 158646 CM091751.1 scf7180000184193 97.81 True relocation, scaffold gap is present, inconsistency = 33597 19673174 19685520 217596 229911 CM091751.1 scf7180000184193 99.09 True fake: scaffold gap size wrong estimation (local) 19685658 19693129 230051 237496 CM091751.1 scf7180000184193 98.95 True fake: scaffold gap size wrong estimation (local) 19693869 19695931 237967 240022 CM091751.1 scf7180000184193 98.21 True fake: scaffold gap size wrong estimation (local) 19695871 19697215 240478 241825 CM091751.1 scf7180000184193 99.04 True fake: scaffold gap size wrong estimation (local) 19698905 19704833 241914 247713 CM091751.1 scf7180000184193 97.07 True indel: indel (> 5bp) 19704911 19707568 247807 250503 CM091751.1 scf7180000184193 97.28 True relocation, inconsistency = 85363 19614879 19615451 255172 254600 CM091751.1 scf7180000184193 100.0 True fake: scaffold gap size wrong estimation (local) 19612826 19613864 257374 256336 CM091751.1 scf7180000184193 99.42 True fake: scaffold gap size wrong estimation (local) 19610632 19612642 259499 257540 CM091751.1 scf7180000184193 96.67 True fake: scaffold gap size wrong estimation (local) 19606742 19610406 263339 259674 CM091751.1 scf7180000184193 99.37 True fake: scaffold gap size wrong estimation (local) 19603460 19606109 266418 263713 CM091751.1 scf7180000184193 96.67 True fake: scaffold gap size wrong estimation (local) 19601875 19603058 267866 266700 CM091751.1 scf7180000184193 97.81 True fake: scaffold gap size wrong estimation (local) 19600436 19601390 269058 268104 CM091751.1 scf7180000184193 98.95 True indel: indel (<= 5bp) 19599796 19600434 269697 269059 CM091751.1 scf7180000184193 99.37 True local misassembly 19597756 19598423 270875 270208 CM091751.1 scf7180000184193 99.55 True fake: scaffold gap size wrong estimation (local) 19594973 19595583 273471 272861 CM091751.1 scf7180000184193 99.02 True fake: scaffold gap size wrong estimation (local) 19593948 19594735 274513 273726 CM091751.1 scf7180000184193 98.98 True local misassembly 19591614 19592838 276848 275624 CM091751.1 scf7180000184193 98.37 True indel: indel (<= 5bp) 19590168 19591612 278293 276849 CM091751.1 scf7180000184193 99.52 True local misassembly 19588082 19589129 279624 278577 CM091751.1 scf7180000184193 98.66 True indel: indel (> 5bp) 19587375 19588081 280352 279646 CM091751.1 scf7180000184193 99.72 True indel: indel (> 5bp) 19586838 19587368 280883 280353 CM091751.1 scf7180000184193 99.81 True fake: scaffold gap size wrong estimation (local) 19584109 19585460 283230 281879 CM091751.1 scf7180000184193 99.7 True indel: indel (> 5bp) 19582908 19584087 284410 283231 CM091751.1 scf7180000184193 98.9 True fake: scaffold gap size wrong estimation (local) 19579048 19581801 288111 285358 CM091751.1 scf7180000184193 99.49 True fake: scaffold gap size wrong estimation (local) 19577046 19578180 290058 288924 CM091751.1 scf7180000184193 99.38 True indel: indel (<= 5bp) 19576418 19577011 290690 290097 CM091751.1 scf7180000184193 98.65 True fake: scaffold gap size wrong estimation (local) 19573689 19574589 292995 292095 CM091751.1 scf7180000184193 98.34 True fake: scaffold gap size wrong estimation (local) 19572737 19573292 293942 293387 CM091751.1 scf7180000184193 99.46 True indel: indel (> 5bp) 19571455 19572285 295244 294414 CM091751.1 scf7180000184193 99.04 True fake: scaffold gap size wrong estimation (local) 19569055 19569753 297199 296501 CM091751.1 scf7180000184193 99.57 True fake: scaffold gap size wrong estimation (local) 19565986 19567052 300070 299004 CM091751.1 scf7180000184193 99.06 True indel: indel (<= 5bp) 19564439 19565869 301619 300189 CM091751.1 scf7180000184193 99.37 True indel: indel (<= 5bp) 19563607 19564437 302450 301620 CM091751.1 scf7180000184193 99.16 True indel: indel (<= 5bp) 19562277 19563605 303779 302451 CM091751.1 scf7180000184193 99.02 True local misassembly 19560918 19561511 304476 303883 CM091751.1 scf7180000184193 99.66 True fake: scaffold gap size wrong estimation (local) 19559051 19560634 306330 304746 CM091751.1 scf7180000184193 99.24 True fake: scaffold gap size wrong estimation (local) 19555784 19558421 309234 306583 CM091751.1 scf7180000184193 98.56 True fake: scaffold gap size wrong estimation (local) 19551683 19553220 311798 310272 CM091751.1 scf7180000184193 98.11 True fake: scaffold gap size wrong estimation (local) 19549436 19551444 314147 312137 CM091751.1 scf7180000184193 99.15 True fake: scaffold gap size wrong estimation (local) 19547571 19548946 315842 314467 CM091751.1 scf7180000184193 99.27 True indel: indel (> 5bp) 19546926 19547486 316531 315971 CM091751.1 scf7180000184193 99.11 True fake: scaffold gap size wrong estimation (local) 19543064 19546523 320297 316843 CM091751.1 scf7180000184193 98.93 True fake: scaffold gap size wrong estimation (local) 19540826 19541737 322146 321227 CM091751.1 scf7180000184193 98.16 True fake: scaffold gap size wrong estimation (local) 19539889 19540615 323191 322463 CM091751.1 scf7180000184193 99.18 True fake: scaffold gap size wrong estimation (local) 19536536 19538900 326219 323855 CM091751.1 scf7180000184193 99.03 True fake: scaffold gap size wrong estimation (local) 19534500 19536278 328212 326425 CM091751.1 scf7180000184193 99.05 True fake: scaffold gap size wrong estimation (local) 19533213 19534115 329667 328765 CM091751.1 scf7180000184193 97.23 True local misassembly 19532427 19533027 330628 330028 CM091751.1 scf7180000184193 95.17 True CONTIG scf7180000184193 331762 misassembled 6420186 6421037 1 858 CM091768.1 scf7180000184194 99.11 True fake: scaffold gap size wrong estimation (local) 6422409 6423877 1952 3419 CM091768.1 scf7180000184194 99.52 True relocation, scaffold gap is present, inconsistency = 2343841 4074121 4078139 7866 3848 CM091768.1 scf7180000184194 99.08 True fake: scaffold gap size wrong estimation (local) 4064698 4072044 16715 9279 CM091768.1 scf7180000184194 98.18 True translocation, scaffold gap is present 10992098 11015775 40191 16737 CM091766.1 scf7180000184194 98.61 True fake: scaffold gap size wrong estimation (local) 10987244 10991086 44686 40844 CM091766.1 scf7180000184194 99.71 True fake: scaffold gap size wrong estimation (local) 10952344 10987192 79552 44758 CM091766.1 scf7180000184194 99.52 True fake: scaffold gap size wrong estimation (local) 10950991 10952223 81351 80093 CM091766.1 scf7180000184194 98.27 True fake: scaffold gap size wrong estimation (local) 10919067 10949584 112669 82228 CM091766.1 scf7180000184194 99.45 True fake: scaffold gap size wrong estimation (local) 10912066 10916833 119612 114857 CM091766.1 scf7180000184194 98.43 True translocation, scaffold gap is present 9126628 9128697 122762 120694 CM091767.1 scf7180000184194 98.94 True fake: scaffold gap size wrong estimation (local) 9121979 9122680 124976 124275 CM091767.1 scf7180000184194 100.0 True translocation, scaffold gap is present 10908024 10909965 127040 125113 CM091766.1 scf7180000184194 98.15 True translocation, scaffold gap is present 9159310 9160395 127371 128448 CM091767.1 scf7180000184194 98.99 True relocation, scaffold gap is present, inconsistency = 39464 9114628 9119793 133668 128501 CM091767.1 scf7180000184194 99.8 True fake: scaffold gap size wrong estimation (local) 9111832 9114279 136619 134172 CM091767.1 scf7180000184194 99.88 True fake: scaffold gap size wrong estimation (local) 9110856 9111364 138626 138118 CM091767.1 scf7180000184194 100.0 True fake: scaffold gap size wrong estimation (local) 9110215 9110855 139306 138666 CM091767.1 scf7180000184194 99.69 True fake: scaffold gap size wrong estimation (local) 9108677 9110083 141244 139822 CM091767.1 scf7180000184194 98.78 True translocation, scaffold gap is present 1835217 1837174 144100 142125 CM091764.1 scf7180000184194 99.49 True fake: scaffold gap size wrong estimation (local) 1833191 1834303 146354 145257 CM091764.1 scf7180000184194 98.23 True translocation, scaffold gap is present 9448733 9450486 146798 148551 CM091767.1 scf7180000184194 99.6 True fake: scaffold gap size wrong estimation (local) 9451418 9452472 149238 150292 CM091767.1 scf7180000184194 100.0 True fake: scaffold gap size wrong estimation (local) 9452710 9454927 151196 153496 CM091767.1 scf7180000184194 97.15 True relocation, scaffold gap is present, inconsistency = 346494 9098718 9105823 160817 153889 CM091767.1 scf7180000184194 96.43 True fake: scaffold gap size wrong estimation (local) 9086878 9096230 172364 162960 CM091767.1 scf7180000184194 98.97 True CONTIG scf7180000184194 172394 misassembled 2303204 2303896 10 702 CM091764.1 scf7180000184195 100.0 True fake: scaffold gap size wrong estimation (local) 2304380 2305350 1583 2553 CM091764.1 scf7180000184195 100.0 True fake: scaffold gap size wrong estimation (local) 2307023 2309165 3772 5924 CM091764.1 scf7180000184195 99.62 True fake: scaffold gap size wrong estimation (local) 2309706 2311050 6714 8058 CM091764.1 scf7180000184195 98.36 True local misassembly 2311586 2315854 8059 12327 CM091764.1 scf7180000184195 99.06 True local misassembly 2317323 2319182 13805 15664 CM091764.1 scf7180000184195 99.35 True fake: scaffold gap size wrong estimation (local) 2319533 2321228 15848 17543 CM091764.1 scf7180000184195 100.0 True indel: indel (<= 5bp) 2321230 2322973 17544 19287 CM091764.1 scf7180000184195 100.0 True indel: indel (<= 5bp) 2322974 2325019 19289 21334 CM091764.1 scf7180000184195 99.95 True fake: scaffold gap size wrong estimation (local) 2327934 2328521 22280 22867 CM091764.1 scf7180000184195 96.6 True fake: scaffold gap size wrong estimation (local) 2329145 2329994 23471 24320 CM091764.1 scf7180000184195 96.94 True fake: scaffold gap size wrong estimation (local) 2329995 2333624 24342 27971 CM091764.1 scf7180000184195 99.5 True fake: scaffold gap size wrong estimation (local) 2333625 2335902 28385 30662 CM091764.1 scf7180000184195 99.91 True fake: scaffold gap size wrong estimation (local) 2336184 2338607 30914 33337 CM091764.1 scf7180000184195 100.0 True fake: scaffold gap size wrong estimation (local) 2339509 2346052 33642 40184 CM091764.1 scf7180000184195 99.83 True fake: scaffold gap size wrong estimation (local) 2346953 2348131 40638 41816 CM091764.1 scf7180000184195 97.96 True fake: scaffold gap size wrong estimation (local) 2349509 2350619 43113 44223 CM091764.1 scf7180000184195 99.64 True fake: scaffold gap size wrong estimation (local) 2353528 2354096 45852 46420 CM091764.1 scf7180000184195 99.65 True fake: scaffold gap size wrong estimation (local) 2354562 2355616 46837 47918 CM091764.1 scf7180000184195 99.15 True fake: scaffold gap size wrong estimation (local) 2357845 2369859 49511 61359 CM091764.1 scf7180000184195 98.21 True fake: scaffold gap size wrong estimation (local) 2370812 2372508 61752 63448 CM091764.1 scf7180000184195 99.76 True fake: scaffold gap size wrong estimation (local) 2372673 2375020 63587 65933 CM091764.1 scf7180000184195 99.83 True fake: scaffold gap size wrong estimation (local) 2376082 2379202 66778 69820 CM091764.1 scf7180000184195 96.12 True fake: scaffold gap size wrong estimation (local) 2379895 2382961 70169 73236 CM091764.1 scf7180000184195 99.9 True fake: scaffold gap size wrong estimation (local) 2383422 2386087 73594 76281 CM091764.1 scf7180000184195 99.2 True fake: not a misassembly (possible transposable element) 4095415 4096380 76282 77247 CM091768.1 scf7180000184195 99.8 True fake: not a misassembly (possible transposable element) 2386382 2503445 77268 193361 CM091764.1 scf7180000184195 98.54 True fake: scaffold gap size wrong estimation (local) 2503646 2535166 193458 223954 CM091764.1 scf7180000184195 96.66 True fake: scaffold gap size wrong estimation (local) 2535300 2544018 224085 232806 CM091764.1 scf7180000184195 99.48 True translocation 3125852 3132687 239792 232807 CM091765.1 scf7180000184195 97.24 True indel: indel (> 5bp) 3125163 3125792 240488 239859 CM091765.1 scf7180000184195 99.05 True indel: indel (> 5bp) 3124565 3125152 241076 240489 CM091765.1 scf7180000184195 99.66 True indel: indel (> 5bp) 3123678 3124555 241954 241077 CM091765.1 scf7180000184195 99.43 True indel: indel (<= 5bp) 3122257 3123677 243377 241957 CM091765.1 scf7180000184195 99.65 True local misassembly 3120215 3121710 245423 243928 CM091765.1 scf7180000184195 99.53 True indel: indel (> 5bp) 3119645 3120161 245967 245451 CM091765.1 scf7180000184195 98.65 True indel: stretch of mismatches 3118416 3119180 247196 246432 CM091765.1 scf7180000184195 100.0 True local misassembly 3116770 3117913 248590 247447 CM091765.1 scf7180000184195 98.78 True fake: scaffold gap size wrong estimation (local) 2999519 3115452 365829 249811 CM091765.1 scf7180000184195 99.43 True fake: scaffold gap size wrong estimation (local) 2996931 2999151 368341 366150 CM091765.1 scf7180000184195 97.72 True fake: scaffold gap size wrong estimation (local) 2914272 2996569 450845 368583 CM091765.1 scf7180000184195 99.59 True indel: indel (> 5bp) 2896571 2914145 468598 451022 CM091765.1 scf7180000184195 99.43 True fake: scaffold gap size wrong estimation (local) 2811523 2896334 553595 468801 CM091765.1 scf7180000184195 99.68 True indel: indel (> 5bp) 2730729 2811478 634497 553655 CM091765.1 scf7180000184195 99.6 True fake: scaffold gap size wrong estimation (local) 2667725 2731881 698348 634518 CM091765.1 scf7180000184195 98.84 True indel: indel (<= 5bp) 2649332 2667654 716434 698424 CM091765.1 scf7180000184195 97.61 True fake: scaffold gap size wrong estimation (local) 2614080 2649318 751340 716578 CM091765.1 scf7180000184195 97.54 True indel: indel (> 5bp) 2595175 2613947 770358 751506 CM091765.1 scf7180000184195 99.09 True fake: not a misassembly (possible transposable element) 538757 539509 770359 771110 CM091754.1 scf7180000184195 99.49 True fake: not a misassembly (possible transposable element) 2479931 2595290 885664 771131 CM091765.1 scf7180000184195 98.79 True fake: scaffold gap size wrong estimation (local) 2461374 2479048 903852 886087 CM091765.1 scf7180000184195 98.94 True fake: scaffold gap size wrong estimation (local) 2438205 2461270 926987 903943 CM091765.1 scf7180000184195 99.43 True fake: scaffold gap size wrong estimation (local) 2365425 2437898 999810 927191 CM091765.1 scf7180000184195 99.32 True fake: scaffold gap size wrong estimation (local) 1948589 2365179 1415961 999914 CM091765.1 scf7180000184195 99.25 True indel: indel (> 5bp) 1903321 1948195 1461266 1416361 CM091765.1 scf7180000184195 99.35 True CONTIG scf7180000184195 1461266 misassembled 5284208 5287041 2834 1 CM091759.1 scf7180000184196 99.68 True indel: indel (<= 5bp) 5282614 5284206 4427 2835 CM091759.1 scf7180000184196 99.5 True indel: indel (> 5bp) 5279007 5282613 8045 4439 CM091759.1 scf7180000184196 99.81 True local misassembly 5277060 5278077 10023 9006 CM091759.1 scf7180000184196 99.9 True indel: indel (<= 5bp) 5276534 5277055 10545 10024 CM091759.1 scf7180000184196 99.43 True local misassembly 5275455 5275986 11627 11096 CM091759.1 scf7180000184196 99.44 True local misassembly 5273750 5274548 13339 12541 CM091759.1 scf7180000184196 99.12 True indel: indel (> 5bp) 5272503 5273371 14592 13724 CM091759.1 scf7180000184196 98.85 True indel: indel (<= 5bp) 5270687 5272502 16409 14594 CM091759.1 scf7180000184196 99.67 True indel: stretch of mismatches 5270043 5270571 17053 16525 CM091759.1 scf7180000184196 99.62 True local misassembly 5263172 5268844 23927 18255 CM091759.1 scf7180000184196 99.51 True indel: indel (<= 5bp) 5260911 5263170 26187 23928 CM091759.1 scf7180000184196 99.6 True indel: indel (<= 5bp) 5257725 5260910 29374 26189 CM091759.1 scf7180000184196 99.75 True indel: indel (<= 5bp) 5257082 5257723 30016 29375 CM091759.1 scf7180000184196 100.0 True local misassembly 5250863 5253408 32562 30017 CM091759.1 scf7180000184196 99.65 True local misassembly 5249339 5250347 34089 33081 CM091759.1 scf7180000184196 99.8 True fake: scaffold gap size wrong estimation (local) 5247752 5249159 35660 34253 CM091759.1 scf7180000184196 99.29 True indel: indel (<= 5bp) 5245711 5247612 37700 35799 CM091759.1 scf7180000184196 99.58 True indel: indel (<= 5bp) 5243524 5245710 39888 37702 CM091759.1 scf7180000184196 99.73 True indel: indel (> 5bp) 5241157 5243048 42195 40304 CM091759.1 scf7180000184196 99.95 True indel: indel (<= 5bp) 5237353 5241156 46000 42197 CM091759.1 scf7180000184196 99.66 True local misassembly 5235800 5236515 47557 46842 CM091759.1 scf7180000184196 99.3 True indel: indel (> 5bp) 5234449 5235799 48916 47566 CM091759.1 scf7180000184196 99.56 True indel: indel (<= 5bp) 5233109 5234206 50251 49154 CM091759.1 scf7180000184196 99.82 True indel: indel (<= 5bp) 5232086 5233099 51270 50257 CM091759.1 scf7180000184196 99.9 True indel: indel (> 5bp) 5229551 5231711 53819 51659 CM091759.1 scf7180000184196 99.4 True indel: indel (<= 5bp) 5226672 5229550 56699 53821 CM091759.1 scf7180000184196 99.58 True local misassembly 5224145 5225804 59209 57550 CM091759.1 scf7180000184196 99.16 True fake: scaffold gap size wrong estimation (local) 5207491 5223963 75372 59386 CM091759.1 scf7180000184196 96.58 True indel: indel (> 5bp) 5104505 5207446 178216 75395 CM091759.1 scf7180000184196 99.33 True fake: scaffold gap size wrong estimation (local) 5037205 5104301 245475 178326 CM091759.1 scf7180000184196 99.53 True fake: scaffold gap size wrong estimation (local) 5005534 5037067 277095 245597 CM091759.1 scf7180000184196 99.39 True fake: scaffold gap size wrong estimation (local) 4957248 5005326 325677 277594 CM091759.1 scf7180000184196 99.5 True fake: scaffold gap size wrong estimation (local) 4935826 4956595 346828 326024 CM091759.1 scf7180000184196 99.35 True fake: scaffold gap size wrong estimation (local) 4906100 4934439 375952 347584 CM091759.1 scf7180000184196 99.39 True indel: indel (> 5bp) 4891154 4906066 390920 375994 CM091759.1 scf7180000184196 99.46 True fake: scaffold gap size wrong estimation (local) 4884236 4889810 396983 391404 CM091759.1 scf7180000184196 99.27 True fake: scaffold gap size wrong estimation (local) 4829114 4883591 451685 397212 CM091759.1 scf7180000184196 99.36 True fake: scaffold gap size wrong estimation (local) 4817973 4828877 462780 451877 CM091759.1 scf7180000184196 99.59 True fake: scaffold gap size wrong estimation (local) 4780198 4817851 500659 462940 CM091759.1 scf7180000184196 98.95 True fake: scaffold gap size wrong estimation (local) 4764651 4780016 516044 500814 CM091759.1 scf7180000184196 98.36 True indel: indel (> 5bp) 4672966 4764544 607215 516175 CM091759.1 scf7180000184196 98.83 True fake: not a misassembly (possible transposable element) 3480636 3483228 609854 607263 CM091760.1 scf7180000184196 99.32 True fake: not a misassembly (possible transposable element) 4648152 4673051 634777 609855 CM091759.1 scf7180000184196 99.21 True fake: scaffold gap size wrong estimation (local) 4636625 4647302 645896 635212 CM091759.1 scf7180000184196 98.08 True fake: scaffold gap size wrong estimation (local) 4619436 4636433 663106 646046 CM091759.1 scf7180000184196 99.15 True fake: scaffold gap size wrong estimation (local) 4586196 4619330 696486 663199 CM091759.1 scf7180000184196 99.44 True fake: scaffold gap size wrong estimation (local) 4577376 4586049 705283 696612 CM091759.1 scf7180000184196 99.5 True local misassembly 4494065 4577204 788322 705350 CM091759.1 scf7180000184196 98.9 True indel: indel (> 5bp) 4476702 4494019 805227 788362 CM091759.1 scf7180000184196 96.36 True indel: indel (> 5bp) 4476071 4476578 805889 805380 CM091759.1 scf7180000184196 99.22 True fake: scaffold gap size wrong estimation (local) 4467359 4475096 813899 806471 CM091759.1 scf7180000184196 95.08 True fake: scaffold gap size wrong estimation (local) 4463921 4466114 816965 814755 CM091759.1 scf7180000184196 98.51 True fake: scaffold gap size wrong estimation (local) 4454135 4463031 826482 817512 CM091759.1 scf7180000184196 95.13 True fake: scaffold gap size wrong estimation (local) 4443354 4453916 836883 826575 CM091759.1 scf7180000184196 96.76 True fake: scaffold gap size wrong estimation (local) 4441567 4442617 838218 837169 CM091759.1 scf7180000184196 99.71 True fake: scaffold gap size wrong estimation (local) 4439845 4441349 839953 838447 CM091759.1 scf7180000184196 99.8 True indel: indel (> 5bp) 4413277 4439798 865846 840024 CM091759.1 scf7180000184196 96.77 True fake: scaffold gap size wrong estimation (local) 4378815 4412371 899577 866186 CM091759.1 scf7180000184196 98.79 True local misassembly 4299317 4378137 978204 899940 CM091759.1 scf7180000184196 98.73 True fake: scaffold gap size wrong estimation (local) 4230375 4298379 1045998 978540 CM091759.1 scf7180000184196 98.69 True indel: indel (> 5bp) 4164240 4230302 1111822 1046057 CM091759.1 scf7180000184196 99.14 True fake: scaffold gap size wrong estimation (local) 4117741 4163590 1157918 1112124 CM091759.1 scf7180000184196 99.45 True fake: scaffold gap size wrong estimation (local) 4106191 4117031 1169322 1158472 CM091759.1 scf7180000184196 99.39 True fake: scaffold gap size wrong estimation (local) 4088336 4105372 1186580 1169614 CM091759.1 scf7180000184196 98.83 True fake: scaffold gap size wrong estimation (local) 4058649 4087988 1215860 1186688 CM091759.1 scf7180000184196 98.79 True fake: scaffold gap size wrong estimation (local) 4055348 4057917 1219001 1216401 CM091759.1 scf7180000184196 98.15 True fake: scaffold gap size wrong estimation (local) 4022079 4054765 1251868 1219346 CM091759.1 scf7180000184196 97.22 True fake: scaffold gap size wrong estimation (local) 3994460 4020553 1278850 1252756 CM091759.1 scf7180000184196 99.2 True indel: indel (> 5bp) 3932790 3994399 1340046 1278933 CM091759.1 scf7180000184196 98.56 True fake: scaffold gap size wrong estimation (local) 3910265 3932074 1361756 1340313 CM091759.1 scf7180000184196 97.38 True fake: scaffold gap size wrong estimation (local) 3907722 3909412 1364093 1362403 CM091759.1 scf7180000184196 99.23 True indel: stretch of mismatches 3907018 3907676 1364797 1364139 CM091759.1 scf7180000184196 98.94 True indel: indel (> 5bp) 3905980 3906889 1365842 1364933 CM091759.1 scf7180000184196 99.12 True fake: scaffold gap size wrong estimation (local) 3898277 3904188 1372394 1366423 CM091759.1 scf7180000184196 98.61 True fake: scaffold gap size wrong estimation (local) 3881567 3897560 1388529 1372654 CM091759.1 scf7180000184196 98.37 True fake: scaffold gap size wrong estimation (local) 3872913 3881478 1396978 1388616 CM091759.1 scf7180000184196 96.89 True fake: scaffold gap size wrong estimation (local) 3854015 3872476 1415769 1397778 CM091759.1 scf7180000184196 96.31 True fake: scaffold gap size wrong estimation (local) 3852122 3853617 1417368 1415875 CM091759.1 scf7180000184196 98.27 True fake: scaffold gap size wrong estimation (local) 3849834 3851946 1419674 1417554 CM091759.1 scf7180000184196 99.1 True fake: scaffold gap size wrong estimation (local) 3844522 3849079 1424864 1420256 CM091759.1 scf7180000184196 98.08 True fake: scaffold gap size wrong estimation (local) 3842757 3844336 1426612 1425029 CM091759.1 scf7180000184196 99.12 True indel: indel (> 5bp) 3823464 3842622 1445738 1426718 CM091759.1 scf7180000184196 97.86 True fake: scaffold gap size wrong estimation (local) 3802647 3822626 1466093 1446103 CM091759.1 scf7180000184196 99.4 True fake: scaffold gap size wrong estimation (local) 3801026 3802001 1467231 1466256 CM091759.1 scf7180000184196 97.85 True local misassembly 3800033 3800883 1468082 1467232 CM091759.1 scf7180000184196 99.88 True fake: scaffold gap size wrong estimation (local) 3799075 3800032 1470853 1469896 CM091759.1 scf7180000184196 99.9 True indel: indel (<= 5bp) 3798197 3798901 1471733 1471029 CM091759.1 scf7180000184196 99.86 True indel: indel (<= 5bp) 3797455 3798196 1472478 1471737 CM091759.1 scf7180000184196 98.65 True fake: scaffold gap size wrong estimation (local) 3793683 3796901 1475931 1472713 CM091759.1 scf7180000184196 99.5 True indel: indel (<= 5bp) 3791590 3793681 1478023 1475932 CM091759.1 scf7180000184196 99.86 True indel: indel (<= 5bp) 3790861 3791587 1478750 1478024 CM091759.1 scf7180000184196 98.35 True indel: indel (<= 5bp) 3787954 3790860 1481658 1478752 CM091759.1 scf7180000184196 99.72 True indel: indel (<= 5bp) 3786948 3787952 1482663 1481659 CM091759.1 scf7180000184196 99.8 True indel: indel (<= 5bp) 3785068 3786947 1484544 1482665 CM091759.1 scf7180000184196 99.36 True fake: scaffold gap size wrong estimation (local) 3776067 3784263 1493438 1485226 CM091759.1 scf7180000184196 99.2 True fake: scaffold gap size wrong estimation (local) 3717901 3775267 1551258 1493878 CM091759.1 scf7180000184196 99.61 True fake: scaffold gap size wrong estimation (local) 3699393 3717787 1569152 1551358 CM091759.1 scf7180000184196 96.13 True fake: scaffold gap size wrong estimation (local) 3646001 3698542 1622059 1569714 CM091759.1 scf7180000184196 98.78 True fake: scaffold gap size wrong estimation (local) 3615937 3645808 1652094 1622205 CM091759.1 scf7180000184196 99.45 True fake: scaffold gap size wrong estimation (local) 3615148 3615734 1652824 1652238 CM091759.1 scf7180000184196 98.98 True fake: scaffold gap size wrong estimation (local) 3559407 3615053 1708253 1653227 CM091759.1 scf7180000184196 98.11 True fake: scaffold gap size wrong estimation (local) 3556110 3557876 1710983 1709223 CM091759.1 scf7180000184196 97.37 True fake: scaffold gap size wrong estimation (local) 3538551 3552954 1726913 1712504 CM091759.1 scf7180000184196 99.65 True fake: scaffold gap size wrong estimation (local) 3537548 3538073 1727813 1727288 CM091759.1 scf7180000184196 100.0 True indel: indel (> 5bp) 3536141 3537518 1729245 1727863 CM091759.1 scf7180000184196 96.68 True CONTIG scf7180000184196 1729605 correct 19501924 19508324 6412 8 CM091751.1 scf7180000184197 98.38 True fake: scaffold gap size wrong estimation (local) 19500053 19501704 8185 6535 CM091751.1 scf7180000184197 99.33 True fake: scaffold gap size wrong estimation (local) 19498614 19499369 9414 8659 CM091751.1 scf7180000184197 99.87 True indel: indel (<= 5bp) 19498107 19498613 9922 9416 CM091751.1 scf7180000184197 99.21 True local misassembly 19494871 19497065 12296 10102 CM091751.1 scf7180000184197 99.27 True fake: scaffold gap size wrong estimation (local) 19492167 19494709 14999 12453 CM091751.1 scf7180000184197 99.33 True fake: not a misassembly (possible transposable element) 465199 465901 15998 15296 CM091764.1 scf7180000184197 100.0 True fake: not a misassembly (possible transposable element) 19489011 19490138 17222 16095 CM091751.1 scf7180000184197 98.76 True fake: scaffold gap size wrong estimation (local) 19487203 19488015 18902 18090 CM091751.1 scf7180000184197 99.38 True fake: scaffold gap size wrong estimation (local) 19484431 19486912 21680 19186 CM091751.1 scf7180000184197 97.53 True fake: scaffold gap size wrong estimation (local) 19482265 19484019 23694 21937 CM091751.1 scf7180000184197 99.43 True fake: scaffold gap size wrong estimation (local) 19479880 19482020 26052 23904 CM091751.1 scf7180000184197 98.88 True fake: scaffold gap size wrong estimation (local) 19475486 19479617 30324 26191 CM091751.1 scf7180000184197 98.54 True translocation, scaffold gap is present 1514928 1540769 30698 56623 CM091758.1 scf7180000184197 98.94 True indel: indel (<= 5bp) 1540823 1552390 56675 67841 CM091758.1 scf7180000184197 95.66 True indel: stretch of mismatches 1552551 1684722 68002 198729 CM091758.1 scf7180000184197 98.32 True fake: scaffold gap size wrong estimation (local) 1682435 1761454 198781 277390 CM091758.1 scf7180000184197 99.09 True indel: indel (<= 5bp) 1761460 1807507 277399 323439 CM091758.1 scf7180000184197 99.56 True indel: indel (> 5bp) 1807533 1988202 323495 503426 CM091758.1 scf7180000184197 98.86 True indel: indel (<= 5bp) 1988245 2257458 503473 772210 CM091758.1 scf7180000184197 99.31 True fake: scaffold gap size wrong estimation (local) 2257800 2438386 772291 952920 CM091758.1 scf7180000184197 99.3 True fake: not a misassembly (possible transposable element) 2702528 2703167 952991 953630 CM091758.1 scf7180000184197 99.84 True fake: not a misassembly (possible transposable element) 2438617 2701817 953681 1216212 CM091758.1 scf7180000184197 99.11 True fake: scaffold gap size wrong estimation (local) 2706405 2707719 1216233 1217589 CM091758.1 scf7180000184197 96.63 True fake: scaffold gap size wrong estimation (local) 2709662 3302353 1217613 1812554 CM091758.1 scf7180000184197 99.22 True CONTIG scf7180000184197 1812600 misassembled 15491915 15531523 36 39420 CM091758.1 scf7180000184198 98.55 True indel: indel (> 5bp) 15531565 15567526 39471 75508 CM091758.1 scf7180000184198 99.57 True fake: scaffold gap size wrong estimation (local) 15567908 15581820 75754 89322 CM091758.1 scf7180000184198 97.06 True fake: scaffold gap size wrong estimation (local) 15582915 15600091 89723 107059 CM091758.1 scf7180000184198 96.94 True fake: scaffold gap size wrong estimation (local) 15600643 15608707 107262 115155 CM091758.1 scf7180000184198 97.54 True fake: scaffold gap size wrong estimation (local) 15609740 15854119 115950 360360 CM091758.1 scf7180000184198 99.58 True local misassembly 15855056 15857324 360859 363155 CM091758.1 scf7180000184198 97.96 True fake: scaffold gap size wrong estimation (local) 15858436 15864989 363830 370381 CM091758.1 scf7180000184198 99.77 True fake: scaffold gap size wrong estimation (local) 15865853 15916730 370945 420953 CM091758.1 scf7180000184198 98.01 True fake: scaffold gap size wrong estimation (local) 15916873 15918912 421035 423010 CM091758.1 scf7180000184198 96.37 True fake: scaffold gap size wrong estimation (local) 15919006 15967137 423105 470522 CM091758.1 scf7180000184198 98.27 True fake: scaffold gap size wrong estimation (local) 15967952 15989663 470914 492635 CM091758.1 scf7180000184198 99.96 True fake: scaffold gap size wrong estimation (local) 15990579 15995019 493014 497449 CM091758.1 scf7180000184198 99.8 True fake: scaffold gap size wrong estimation (local) 15995274 16061429 497600 563712 CM091758.1 scf7180000184198 99.86 True local misassembly 16063881 16067079 563713 566911 CM091758.1 scf7180000184198 99.79 True relocation, inconsistency = 27238 16094318 16106242 566912 578747 CM091758.1 scf7180000184198 99.1 True CONTIG scf7180000184198 578747 misassembled 4110340 4281575 11 172246 CM091758.1 scf7180000184199 98.55 True fake: scaffold gap size wrong estimation (local) 4281734 4364794 172387 255306 CM091758.1 scf7180000184199 99.31 True fake: scaffold gap size wrong estimation (local) 4365725 4407651 255923 297872 CM091758.1 scf7180000184199 99.8 True fake: scaffold gap size wrong estimation (local) 4408188 4410947 298030 300787 CM091758.1 scf7180000184199 98.7 True relocation, inconsistency = 11380 4422328 4735558 300788 614178 CM091758.1 scf7180000184199 99.7 True local misassembly 4736077 4805026 614748 683540 CM091758.1 scf7180000184199 99.59 True fake: scaffold gap size wrong estimation (local) 4805801 4854367 683981 732399 CM091758.1 scf7180000184199 99.19 True fake: scaffold gap size wrong estimation (local) 4854546 4862540 732977 740969 CM091758.1 scf7180000184199 99.31 True indel: indel (> 5bp) 4862669 4892403 741068 770822 CM091758.1 scf7180000184199 99.35 True local misassembly 4892842 5185772 771503 1064412 CM091758.1 scf7180000184199 99.45 True fake: not a misassembly (possible transposable element) 6548774 6550732 1067307 1065348 CM091751.1 scf7180000184199 99.39 True fake: not a misassembly (possible transposable element) 5186742 5261359 1067328 1141994 CM091758.1 scf7180000184199 99.57 True fake: scaffold gap size wrong estimation (local) 5261495 5291889 1142115 1172550 CM091758.1 scf7180000184199 99.54 True fake: scaffold gap size wrong estimation (local) 5292624 5317007 1172861 1197265 CM091758.1 scf7180000184199 99.67 True local misassembly 5317469 5402618 1197807 1283029 CM091758.1 scf7180000184199 99.63 True indel: stretch of mismatches 5402717 5405188 1283128 1285599 CM091758.1 scf7180000184199 99.72 True indel: indel (> 5bp) 5405432 5435409 1285852 1315826 CM091758.1 scf7180000184199 99.58 True CONTIG scf7180000184199 1315851 misassembled 3989392 3993027 3635 1 CM091754.1 scf7180000184200 99.97 True fake: scaffold gap size wrong estimation (local) 3953959 3988337 38554 4342 CM091754.1 scf7180000184200 99.47 True fake: not a misassembly (possible transposable element) 3989439 3990838 39974 38575 CM091754.1 scf7180000184200 100.0 True fake: not a misassembly (possible transposable element) 3944454 3955121 50642 39975 CM091754.1 scf7180000184200 99.98 True fake: scaffold gap size wrong estimation (local) 3933420 3944118 61790 50881 CM091754.1 scf7180000184200 98.29 True fake: scaffold gap size wrong estimation (local) 3925059 3933320 70140 61892 CM091754.1 scf7180000184200 99.84 True fake: scaffold gap size wrong estimation (local) 3882252 3924931 112464 70550 CM091754.1 scf7180000184200 98.01 True fake: scaffold gap size wrong estimation (local) 3880494 3881629 114132 112997 CM091754.1 scf7180000184200 100.0 True fake: scaffold gap size wrong estimation (local) 3865076 3878498 128961 115697 CM091754.1 scf7180000184200 98.61 True fake: scaffold gap size wrong estimation (local) 3862359 3864869 131685 129168 CM091754.1 scf7180000184200 99.56 True fake: scaffold gap size wrong estimation (local) 3858896 3862148 135197 131944 CM091754.1 scf7180000184200 99.94 True fake: scaffold gap size wrong estimation (local) 3857535 3858155 136353 135733 CM091754.1 scf7180000184200 100.0 True fake: scaffold gap size wrong estimation (local) 3796247 3857071 196758 136725 CM091754.1 scf7180000184200 98.39 True fake: scaffold gap size wrong estimation (local) 3793875 3795482 198845 197238 CM091754.1 scf7180000184200 98.69 True indel: indel (<= 5bp) 3792856 3793874 199865 198847 CM091754.1 scf7180000184200 100.0 True fake: scaffold gap size wrong estimation (local) 3790254 3792358 202175 200071 CM091754.1 scf7180000184200 99.9 True fake: scaffold gap size wrong estimation (local) 3788857 3789722 203706 202841 CM091754.1 scf7180000184200 97.58 True local misassembly 3786989 3788519 205237 203707 CM091754.1 scf7180000184200 100.0 True indel: indel (<= 5bp) 3785984 3786988 206243 205239 CM091754.1 scf7180000184200 100.0 True fake: scaffold gap size wrong estimation (local) 3776317 3785398 215622 206546 CM091754.1 scf7180000184200 99.58 True fake: scaffold gap size wrong estimation (local) 3765175 3776233 226489 215685 CM091754.1 scf7180000184200 97.29 True fake: scaffold gap size wrong estimation (local) 3720212 3764671 271281 226671 CM091754.1 scf7180000184200 99.08 True indel: indel (> 5bp) 3713210 3720180 278330 271361 CM091754.1 scf7180000184200 99.87 True fake: scaffold gap size wrong estimation (local) 3643519 3710256 346310 279663 CM091754.1 scf7180000184200 98.14 True fake: scaffold gap size wrong estimation (local) 3621775 3642694 367494 346796 CM091754.1 scf7180000184200 98.14 True fake: scaffold gap size wrong estimation (local) 3613912 3621530 375085 367709 CM091754.1 scf7180000184200 95.17 True fake: scaffold gap size wrong estimation (local) 3611702 3613473 377657 375886 CM091754.1 scf7180000184200 99.32 True local misassembly 3609856 3610555 378536 377837 CM091754.1 scf7180000184200 98.86 True indel: indel (> 5bp) 3608271 3609849 380115 378537 CM091754.1 scf7180000184200 99.37 True indel: indel (> 5bp) 3607520 3608252 380848 380116 CM091754.1 scf7180000184200 98.91 True local misassembly 3605871 3607519 382746 381098 CM091754.1 scf7180000184200 99.03 True local misassembly 3603411 3605342 384678 382747 CM091754.1 scf7180000184200 98.34 True local misassembly 3602294 3603283 385668 384679 CM091754.1 scf7180000184200 99.8 True indel: indel (> 5bp) 3601219 3602293 386767 385693 CM091754.1 scf7180000184200 99.72 True indel: indel (<= 5bp) 3600686 3601218 387301 386769 CM091754.1 scf7180000184200 99.81 True indel: indel (<= 5bp) 3599627 3600223 388363 387767 CM091754.1 scf7180000184200 96.15 True indel: indel (> 5bp) 3599050 3599618 388932 388364 CM091754.1 scf7180000184200 99.65 True fake: scaffold gap size wrong estimation (local) 3597986 3598798 389936 389124 CM091754.1 scf7180000184200 99.63 True fake: scaffold gap size wrong estimation (local) 3595530 3596738 392162 390955 CM091754.1 scf7180000184200 99.42 True fake: scaffold gap size wrong estimation (local) 3591166 3593311 396025 393879 CM091754.1 scf7180000184200 99.63 True fake: scaffold gap size wrong estimation (local) 3578336 3590715 408855 396417 CM091754.1 scf7180000184200 98.96 True fake: not a misassembly (possible transposable element) 1934069 1935498 410290 408856 CM091768.1 scf7180000184200 98.91 True fake: not a misassembly (possible transposable element) 3576780 3578049 411752 410483 CM091754.1 scf7180000184200 99.13 True indel: indel (> 5bp) 3576113 3576779 412459 411793 CM091754.1 scf7180000184200 98.95 True fake: scaffold gap size wrong estimation (local) 3573970 3575509 414862 413323 CM091754.1 scf7180000184200 99.68 True fake: scaffold gap size wrong estimation (local) 3571910 3572697 416928 416141 CM091754.1 scf7180000184200 98.22 True indel: indel (<= 5bp) 3570738 3571610 418103 417231 CM091754.1 scf7180000184200 99.2 True indel: indel (<= 5bp) 3570105 3570737 418737 418105 CM091754.1 scf7180000184200 97.63 True fake: scaffold gap size wrong estimation (local) 3562156 3569385 426506 419219 CM091754.1 scf7180000184200 98.76 True fake: scaffold gap size wrong estimation (local) 3560062 3560675 428567 427954 CM091754.1 scf7180000184200 99.84 True indel: indel (<= 5bp) 3558471 3560061 430159 428569 CM091754.1 scf7180000184200 99.75 True fake: scaffold gap size wrong estimation (local) 3557475 3558176 431159 430458 CM091754.1 scf7180000184200 99.0 True fake: scaffold gap size wrong estimation (local) 3556293 3556829 432288 431752 CM091754.1 scf7180000184200 99.26 True indel: indel (<= 5bp) 3555498 3556292 433088 432294 CM091754.1 scf7180000184200 99.5 True fake: scaffold gap size wrong estimation (local) 3554166 3554682 433983 433467 CM091754.1 scf7180000184200 99.61 True indel: indel (<= 5bp) 3553200 3554059 434951 434092 CM091754.1 scf7180000184200 99.53 True indel: indel (<= 5bp) 3552451 3553195 435696 434952 CM091754.1 scf7180000184200 99.87 True fake: scaffold gap size wrong estimation (local) 3551468 3552421 437674 436721 CM091754.1 scf7180000184200 99.27 True local misassembly 3549453 3550714 439261 438000 CM091754.1 scf7180000184200 98.73 True fake: scaffold gap size wrong estimation (local) 3548784 3549452 439962 439294 CM091754.1 scf7180000184200 99.7 True indel: stretch of mismatches 3547359 3548573 441387 440173 CM091754.1 scf7180000184200 99.92 True indel: indel (<= 5bp) 3546781 3547358 441966 441389 CM091754.1 scf7180000184200 100.0 True local misassembly 3544145 3544807 444617 443955 CM091754.1 scf7180000184200 99.55 True indel: indel (<= 5bp) 3543093 3543774 445668 444987 CM091754.1 scf7180000184200 99.12 True fake: scaffold gap size wrong estimation (local) 3542022 3542924 448409 447507 CM091754.1 scf7180000184200 99.22 True indel: stretch of mismatches 3541154 3541827 449277 448604 CM091754.1 scf7180000184200 99.7 True indel: indel (<= 5bp) 3540523 3541153 449912 449282 CM091754.1 scf7180000184200 99.21 True translocation 2110701 2113633 450787 453719 CM091764.1 scf7180000184200 99.01 True local misassembly 2114409 2116854 453720 456165 CM091764.1 scf7180000184200 99.06 True indel: indel (<= 5bp) 2117038 2121223 456351 460536 CM091764.1 scf7180000184200 99.98 True indel: indel (<= 5bp) 2121224 2122173 460538 461487 CM091764.1 scf7180000184200 100.0 True fake: scaffold gap size wrong estimation (local) 2126637 2127375 462226 462964 CM091764.1 scf7180000184200 100.0 True CONTIG scf7180000184200 463050 misassembled 13539314 13541338 2024 1 CM091754.1 scf7180000184201 99.7 True fake: scaffold gap size wrong estimation (local) 13529572 13541818 14265 2054 CM091754.1 scf7180000184201 99.18 True local misassembly 13520867 13524201 24907 21559 CM091754.1 scf7180000184201 98.69 True local misassembly 13494278 13520766 52331 25660 CM091754.1 scf7180000184201 98.48 True local misassembly 13478193 13494177 69317 53377 CM091754.1 scf7180000184201 99.19 True relocation, inconsistency = -18333 13472987 13478092 92964 87751 CM091754.1 scf7180000184201 97.87 True local misassembly 13356623 13472886 210883 94628 CM091754.1 scf7180000184201 99.75 True fake: scaffold gap size wrong estimation (local) 13352667 13356508 214854 210997 CM091754.1 scf7180000184201 99.13 True fake: scaffold gap size wrong estimation (local) 13332522 13352427 234809 215050 CM091754.1 scf7180000184201 98.26 True local misassembly 13331312 13331819 235772 235265 CM091754.1 scf7180000184201 99.41 True indel: indel (<= 5bp) 13329451 13331310 237632 235773 CM091754.1 scf7180000184201 99.46 True indel: stretch of mismatches 13328299 13329388 238784 237695 CM091754.1 scf7180000184201 99.72 True fake: scaffold gap size wrong estimation (local) 13327347 13327874 240355 239828 CM091754.1 scf7180000184201 99.81 True local misassembly 13323821 13326418 243280 240682 CM091754.1 scf7180000184201 99.46 True fake: scaffold gap size wrong estimation (local) 13318360 13323683 248744 243437 CM091754.1 scf7180000184201 98.66 True local misassembly 13301028 13317725 265769 249009 CM091754.1 scf7180000184201 98.52 True local misassembly 13298422 13300275 268356 266503 CM091754.1 scf7180000184201 99.3 True indel: indel (<= 5bp) 13297861 13298418 268914 268357 CM091754.1 scf7180000184201 99.46 True indel: indel (<= 5bp) 13297250 13297859 269524 268915 CM091754.1 scf7180000184201 99.34 True indel: stretch of mismatches 13296310 13297049 270464 269725 CM091754.1 scf7180000184201 99.32 True local misassembly 13293233 13293899 271131 270465 CM091754.1 scf7180000184201 99.85 True indel: indel (> 5bp) 13291586 13293107 272785 271264 CM091754.1 scf7180000184201 99.34 True indel: indel (<= 5bp) 13290454 13291430 273920 272944 CM091754.1 scf7180000184201 99.8 True local misassembly 13283483 13288576 279792 274876 CM091754.1 scf7180000184201 95.29 True fake: scaffold gap size wrong estimation (local) 13239521 13283601 324035 280252 CM091754.1 scf7180000184201 98.22 True fake: scaffold gap size wrong estimation (local) 13130651 13239344 433288 324150 CM091754.1 scf7180000184201 99.03 True indel: indel (> 5bp) 13122921 13130537 440907 433343 CM091754.1 scf7180000184201 98.41 True fake: not a misassembly (possible transposable element) 14998859 14999431 441413 441985 CM091753.1 scf7180000184201 99.48 True fake: not a misassembly (possible transposable element) 13078020 13122977 487013 442025 CM091754.1 scf7180000184201 99.28 True fake: scaffold gap size wrong estimation (local) 13018847 13077950 546825 487497 CM091754.1 scf7180000184201 98.66 True fake: scaffold gap size wrong estimation (local) 12915402 13016575 647074 547331 CM091754.1 scf7180000184201 97.68 True fake: scaffold gap size wrong estimation (local) 12907693 12915228 654727 647152 CM091754.1 scf7180000184201 98.87 True indel: indel (> 5bp) 12906469 12907440 655964 654993 CM091754.1 scf7180000184201 96.6 True local misassembly 12902591 12905941 659315 655965 CM091754.1 scf7180000184201 99.58 True indel: indel (> 5bp) 12901306 12902231 660584 659659 CM091754.1 scf7180000184201 99.68 True fake: scaffold gap size wrong estimation (local) 12896705 12901117 665186 660776 CM091754.1 scf7180000184201 96.99 True local misassembly 12893724 12896010 667473 665187 CM091754.1 scf7180000184201 99.52 True fake: scaffold gap size wrong estimation (local) 12875991 12891908 684318 668514 CM091754.1 scf7180000184201 98.37 True fake: scaffold gap size wrong estimation (local) 12847048 12875861 712809 684455 CM091754.1 scf7180000184201 97.58 True fake: scaffold gap size wrong estimation (local) 12845144 12846782 714648 713010 CM091754.1 scf7180000184201 99.45 True fake: scaffold gap size wrong estimation (local) 12842935 12844759 716754 714930 CM091754.1 scf7180000184201 99.62 True fake: scaffold gap size wrong estimation (local) 12840145 12841651 718843 717334 CM091754.1 scf7180000184201 99.25 True fake: scaffold gap size wrong estimation (local) 12769568 12839748 789046 718982 CM091754.1 scf7180000184201 97.19 True fake: scaffold gap size wrong estimation (local) 12752011 12768884 806309 789425 CM091754.1 scf7180000184201 99.32 True CONTIG scf7180000184201 806309 misassembled 3339845 3340923 1079 1 CM091768.1 scf7180000184202 99.54 True relocation, scaffold gap is present, inconsistency = -67904 3399225 3406560 9681 2268 CM091768.1 scf7180000184202 96.95 True fake: scaffold gap size wrong estimation (local) 3396727 3398805 12084 10006 CM091768.1 scf7180000184202 100.0 True fake: scaffold gap size wrong estimation (local) 3394645 3395657 14056 13044 CM091768.1 scf7180000184202 97.53 True local misassembly 3393107 3393933 15712 14886 CM091768.1 scf7180000184202 98.91 True fake: scaffold gap size wrong estimation (local) 3390961 3392862 18314 16400 CM091768.1 scf7180000184202 96.61 True indel: indel (<= 5bp) 3389762 3390905 19509 18371 CM091768.1 scf7180000184202 97.82 True fake: scaffold gap size wrong estimation (local) 3386197 3388795 22516 19917 CM091768.1 scf7180000184202 99.58 True translocation, scaffold gap is present 221835 223571 25138 23402 CM091760.1 scf7180000184202 99.94 True fake: scaffold gap size wrong estimation (local) 220334 221665 26643 25311 CM091760.1 scf7180000184202 99.77 True fake: scaffold gap size wrong estimation (local) 209055 219662 37456 26874 CM091760.1 scf7180000184202 98.97 True fake: scaffold gap size wrong estimation (local) 206573 207819 39870 38624 CM091760.1 scf7180000184202 99.28 True translocation, scaffold gap is present 965007 967319 42204 39891 CM091754.1 scf7180000184202 99.14 True fake: scaffold gap size wrong estimation (local) 963599 964786 43491 42301 CM091754.1 scf7180000184202 98.99 True fake: scaffold gap size wrong estimation (local) 962535 963155 44396 43776 CM091754.1 scf7180000184202 95.81 True local misassembly 961790 962371 45049 44468 CM091754.1 scf7180000184202 99.83 True local misassembly 960569 961273 46279 45575 CM091754.1 scf7180000184202 99.86 True indel: indel (> 5bp) 958780 960539 48039 46280 CM091754.1 scf7180000184202 99.09 True indel: indel (<= 5bp) 957651 958777 49166 48040 CM091754.1 scf7180000184202 99.73 True indel: indel (> 5bp) 956705 957214 50118 49609 CM091754.1 scf7180000184202 99.61 True local misassembly 955253 956098 51581 50736 CM091754.1 scf7180000184202 99.53 True indel: indel (<= 5bp) 954725 955252 52110 51583 CM091754.1 scf7180000184202 98.48 True local misassembly 952494 953985 53748 52257 CM091754.1 scf7180000184202 99.13 True fake: scaffold gap size wrong estimation (local) 944064 952158 62104 54075 CM091754.1 scf7180000184202 98.04 True fake: scaffold gap size wrong estimation (local) 930283 943809 75371 62174 CM091754.1 scf7180000184202 96.44 True fake: not a misassembly (possible transposable element) 13309462 13311098 77011 75372 CM091755.1 scf7180000184202 99.35 True fake: not a misassembly (possible transposable element) 927108 930093 80039 77054 CM091754.1 scf7180000184202 99.5 True fake: scaffold gap size wrong estimation (local) 918267 926738 88513 80331 CM091754.1 scf7180000184202 95.3 True indel: indel (> 5bp) 916657 918200 90157 88616 CM091754.1 scf7180000184202 99.03 True relocation, inconsistency = 60125 978455 979703 90287 91535 CM091754.1 scf7180000184202 99.2 True local misassembly 980596 981936 92423 93763 CM091754.1 scf7180000184202 99.55 True fake: scaffold gap size wrong estimation (local) 983579 984093 94230 94744 CM091754.1 scf7180000184202 98.83 True indel: indel (<= 5bp) 984399 986024 95053 96678 CM091754.1 scf7180000184202 99.45 True indel: indel (<= 5bp) 986204 986827 96853 97476 CM091754.1 scf7180000184202 99.84 True indel: indel (> 5bp) 986951 987864 97558 98471 CM091754.1 scf7180000184202 98.91 True fake: scaffold gap size wrong estimation (local) 989280 991451 99412 101585 CM091754.1 scf7180000184202 99.59 True fake: not a misassembly (possible transposable element) 520371 522937 101649 104186 CM091753.1 scf7180000184202 98.79 True fake: not a misassembly (possible transposable element) 991703 992966 104202 105465 CM091754.1 scf7180000184202 99.45 True fake: scaffold gap size wrong estimation (local) 994511 997269 107299 110061 CM091754.1 scf7180000184202 97.95 True fake: scaffold gap size wrong estimation (local) 998260 1001687 110615 114000 CM091754.1 scf7180000184202 97.87 True fake: scaffold gap size wrong estimation (local) 1001980 1008943 114288 121305 CM091754.1 scf7180000184202 98.79 True fake: scaffold gap size wrong estimation (local) 1010128 1012331 121795 123998 CM091754.1 scf7180000184202 99.73 True local misassembly 1013496 1014005 125166 125675 CM091754.1 scf7180000184202 99.61 True local misassembly 1014779 1015306 126450 126977 CM091754.1 scf7180000184202 99.81 True local misassembly 1015934 1016621 127607 128294 CM091754.1 scf7180000184202 100.0 True local misassembly 1018542 1019320 128774 129552 CM091754.1 scf7180000184202 99.36 True indel: indel (<= 5bp) 1019322 1020431 129553 130662 CM091754.1 scf7180000184202 99.73 True fake: scaffold gap size wrong estimation (local) 1021691 1023800 131756 133859 CM091754.1 scf7180000184202 98.82 True fake: scaffold gap size wrong estimation (local) 1024032 1046369 134084 156232 CM091754.1 scf7180000184202 98.81 True fake: scaffold gap size wrong estimation (local) 1046568 1049071 156482 158995 CM091754.1 scf7180000184202 99.68 True fake: scaffold gap size wrong estimation (local) 1049574 1065032 159791 175186 CM091754.1 scf7180000184202 96.67 True fake: scaffold gap size wrong estimation (local) 1065599 1069559 175553 179516 CM091754.1 scf7180000184202 99.62 True fake: scaffold gap size wrong estimation (local) 1070776 1071563 180265 181065 CM091754.1 scf7180000184202 99.17 True fake: scaffold gap size wrong estimation (local) 1072025 1073257 181372 182605 CM091754.1 scf7180000184202 99.51 True fake: scaffold gap size wrong estimation (local) 1074225 1076154 183533 185436 CM091754.1 scf7180000184202 97.48 True fake: scaffold gap size wrong estimation (local) 1078133 1079339 186906 188113 CM091754.1 scf7180000184202 99.17 True fake: scaffold gap size wrong estimation (local) 1079559 1081154 188969 190573 CM091754.1 scf7180000184202 98.13 True fake: scaffold gap size wrong estimation (local) 1082331 1085167 191674 194510 CM091754.1 scf7180000184202 99.54 True fake: scaffold gap size wrong estimation (local) 1087354 1088087 196449 197182 CM091754.1 scf7180000184202 96.19 True indel: indel (<= 5bp) 1088280 1088896 197370 197986 CM091754.1 scf7180000184202 98.54 True fake: scaffold gap size wrong estimation (local) 1090008 1091779 199251 201022 CM091754.1 scf7180000184202 99.66 True indel: indel (> 5bp) 1091939 1093469 201173 202703 CM091754.1 scf7180000184202 96.47 True fake: scaffold gap size wrong estimation (local) 1095245 1095984 204398 205137 CM091754.1 scf7180000184202 99.59 True indel: indel (> 5bp) 1096362 1098506 205509 207653 CM091754.1 scf7180000184202 99.21 True fake: scaffold gap size wrong estimation (local) 1099470 1101013 208819 210362 CM091754.1 scf7180000184202 99.42 True local misassembly 1101662 1102347 210363 211048 CM091754.1 scf7180000184202 99.42 True fake: scaffold gap size wrong estimation (local) 1102371 1103871 211090 212590 CM091754.1 scf7180000184202 99.2 True fake: scaffold gap size wrong estimation (local) 1104447 1110209 212971 218750 CM091754.1 scf7180000184202 98.34 True translocation 9314042 9329588 218751 234300 CM091766.1 scf7180000184202 99.44 True fake: not a misassembly (possible transposable element) 8644444 8645583 235440 234301 CM091766.1 scf7180000184202 100.0 True fake: not a misassembly (possible transposable element) 9329567 9382011 235462 287900 CM091766.1 scf7180000184202 99.53 True fake: scaffold gap size wrong estimation (local) 9382178 9407618 288064 313492 CM091766.1 scf7180000184202 99.59 True fake: scaffold gap size wrong estimation (local) 9407802 9587995 313616 493703 CM091766.1 scf7180000184202 99.41 True fake: scaffold gap size wrong estimation (local) 9588456 9688566 493824 593585 CM091766.1 scf7180000184202 99.03 True fake: scaffold gap size wrong estimation (local) 9688772 9708374 593645 613274 CM091766.1 scf7180000184202 99.55 True fake: scaffold gap size wrong estimation (local) 9709864 9710616 614313 615066 CM091766.1 scf7180000184202 99.73 True fake: scaffold gap size wrong estimation (local) 9710776 9751231 615187 656789 CM091766.1 scf7180000184202 97.07 True fake: scaffold gap size wrong estimation (local) 9751392 10122715 656912 1027309 CM091766.1 scf7180000184202 99.33 True fake: scaffold gap size wrong estimation (local) 10122978 10273346 1027393 1177658 CM091766.1 scf7180000184202 98.89 True fake: scaffold gap size wrong estimation (local) 10273463 10335952 1177746 1240295 CM091766.1 scf7180000184202 99.61 True indel: indel (> 5bp) 10336147 10353180 1240430 1257475 CM091766.1 scf7180000184202 99.34 True indel: indel (> 5bp) 10353204 10369611 1257506 1273655 CM091766.1 scf7180000184202 98.18 True fake: scaffold gap size wrong estimation (local) 10369843 10394306 1274147 1298617 CM091766.1 scf7180000184202 99.69 True translocation, scaffold gap is present 1017239 1017757 1298989 1299519 CM091754.1 scf7180000184202 99.11 True CONTIG scf7180000184202 1299519 misassembled 2395355 2395856 1413 1914 CM091768.1 scf7180000184203 99.8 True local misassembly 2398016 2398830 3434 4248 CM091768.1 scf7180000184203 98.65 True indel: indel (<= 5bp) 2398831 2400258 4250 5677 CM091768.1 scf7180000184203 99.51 True local misassembly 2404613 2405466 10038 10891 CM091768.1 scf7180000184203 99.88 True indel: indel (<= 5bp) 2405906 2406745 11330 12169 CM091768.1 scf7180000184203 97.98 True fake: scaffold gap size wrong estimation (local) 2407576 2409615 12644 14683 CM091768.1 scf7180000184203 99.26 True fake: scaffold gap size wrong estimation (local) 2410147 2412686 15138 17677 CM091768.1 scf7180000184203 99.09 True relocation, inconsistency = 16777 2390687 2392920 20360 18127 CM091768.1 scf7180000184203 98.97 True fake: scaffold gap size wrong estimation (local) 2388813 2389765 21938 20986 CM091768.1 scf7180000184203 95.59 True indel: indel (> 5bp) 2388006 2388806 22739 21939 CM091768.1 scf7180000184203 98.75 True local misassembly 2386165 2386964 24032 23233 CM091768.1 scf7180000184203 99.25 True local misassembly 2384410 2385082 25158 24486 CM091768.1 scf7180000184203 99.7 True indel: indel (<= 5bp) 2383314 2383922 26251 25643 CM091768.1 scf7180000184203 100.0 True fake: scaffold gap size wrong estimation (local) 2381623 2382382 27924 27165 CM091768.1 scf7180000184203 99.61 True local misassembly 2378441 2379554 30962 29849 CM091768.1 scf7180000184203 99.55 True local misassembly 2377056 2378114 32021 30963 CM091768.1 scf7180000184203 99.53 True fake: scaffold gap size wrong estimation (local) 2373502 2374437 35451 34516 CM091768.1 scf7180000184203 97.54 True local misassembly 2371904 2372725 36535 35714 CM091768.1 scf7180000184203 99.51 True local misassembly 2369885 2370853 38386 37418 CM091768.1 scf7180000184203 99.59 True fake: scaffold gap size wrong estimation (local) 2367686 2369116 40057 38617 CM091768.1 scf7180000184203 96.96 True fake: not a misassembly (possible transposable element) 3618127 3619197 41128 40058 CM091755.1 scf7180000184203 99.64 True fake: not a misassembly (possible transposable element) 2366773 2367301 42089 41561 CM091768.1 scf7180000184203 100.0 True indel: indel (<= 5bp) 2366218 2366772 42645 42091 CM091768.1 scf7180000184203 98.56 True local misassembly 2363018 2364598 44824 43244 CM091768.1 scf7180000184203 99.43 True local misassembly 2361295 2361862 46572 46005 CM091768.1 scf7180000184203 99.47 True indel: indel (<= 5bp) 2360018 2361039 47845 46824 CM091768.1 scf7180000184203 99.71 True local misassembly 2357731 2359149 49847 48429 CM091768.1 scf7180000184203 99.08 True local misassembly 2355374 2356556 51706 50524 CM091768.1 scf7180000184203 98.73 True fake: scaffold gap size wrong estimation (local) 2353411 2355161 53716 51966 CM091768.1 scf7180000184203 99.31 True indel: indel (<= 5bp) 2352695 2353410 54433 53718 CM091768.1 scf7180000184203 99.44 True local misassembly 2349210 2350349 57175 56036 CM091768.1 scf7180000184203 99.3 True indel: indel (<= 5bp) 2348124 2349209 58264 57179 CM091768.1 scf7180000184203 98.62 True fake: scaffold gap size wrong estimation (local) 2346102 2347328 60163 58937 CM091768.1 scf7180000184203 99.35 True local misassembly 2342561 2345533 63416 60444 CM091768.1 scf7180000184203 99.13 True local misassembly 2340678 2341227 64738 64189 CM091768.1 scf7180000184203 99.45 True indel: indel (> 5bp) 2339373 2340677 66053 64749 CM091768.1 scf7180000184203 99.39 True fake: scaffold gap size wrong estimation (local) 2336181 2337515 69476 68142 CM091768.1 scf7180000184203 98.8 True indel: indel (> 5bp) 2335282 2335806 70439 69915 CM091768.1 scf7180000184203 99.81 True indel: indel (> 5bp) 2334458 2335268 71250 70440 CM091768.1 scf7180000184203 99.26 True indel: indel (> 5bp) 2333922 2334457 71796 71261 CM091768.1 scf7180000184203 99.25 True fake: scaffold gap size wrong estimation (local) 2333118 2333921 73481 72678 CM091768.1 scf7180000184203 99.38 True indel: indel (<= 5bp) 2332588 2333116 74010 73482 CM091768.1 scf7180000184203 100.0 True local misassembly 2331341 2331986 75263 74618 CM091768.1 scf7180000184203 99.38 True indel: indel (> 5bp) 2329381 2330952 77232 75661 CM091768.1 scf7180000184203 99.36 True local misassembly 2325549 2327857 79789 77481 CM091768.1 scf7180000184203 99.52 True fake: scaffold gap size wrong estimation (local) 2322280 2323102 81733 80911 CM091768.1 scf7180000184203 99.76 True indel: indel (<= 5bp) 2321725 2322279 82289 81735 CM091768.1 scf7180000184203 100.0 True indel: indel (<= 5bp) 2321196 2321724 82822 82294 CM091768.1 scf7180000184203 98.11 True local misassembly 2318051 2319782 85535 83804 CM091768.1 scf7180000184203 99.36 True local misassembly 2316188 2317001 87390 86577 CM091768.1 scf7180000184203 99.14 True indel: indel (> 5bp) 2315343 2316165 88226 87404 CM091768.1 scf7180000184203 99.64 True local misassembly 2313033 2313640 89918 89311 CM091768.1 scf7180000184203 100.0 True indel: indel (<= 5bp) 2311707 2313031 91243 89919 CM091768.1 scf7180000184203 99.7 True local misassembly 2310062 2310657 92634 92039 CM091768.1 scf7180000184203 99.33 True indel: indel (<= 5bp) 2309090 2309755 93608 92943 CM091768.1 scf7180000184203 98.2 True fake: scaffold gap size wrong estimation (local) 2308093 2309054 94628 93667 CM091768.1 scf7180000184203 99.79 True fake: scaffold gap size wrong estimation (local) 2259342 2307804 143120 95099 CM091768.1 scf7180000184203 97.86 True fake: scaffold gap size wrong estimation (local) 2215700 2258700 186588 143924 CM091768.1 scf7180000184203 96.0 True fake: scaffold gap size wrong estimation (local) 2202816 2214871 198948 187055 CM091768.1 scf7180000184203 97.49 True fake: scaffold gap size wrong estimation (local) 2201161 2202627 200526 199060 CM091768.1 scf7180000184203 98.84 True local misassembly 2199003 2199973 201497 200527 CM091768.1 scf7180000184203 99.38 True indel: indel (<= 5bp) 2198161 2199001 202338 201498 CM091768.1 scf7180000184203 99.76 True local misassembly 2196634 2197640 203866 202860 CM091768.1 scf7180000184203 99.9 True fake: scaffold gap size wrong estimation (local) 2194612 2196219 205814 204200 CM091768.1 scf7180000184203 99.32 True fake: scaffold gap size wrong estimation (local) 2192418 2193322 207747 206843 CM091768.1 scf7180000184203 99.56 True local misassembly 2190558 2191456 209130 208232 CM091768.1 scf7180000184203 99.78 True indel: indel (<= 5bp) 2189758 2190557 209933 209134 CM091768.1 scf7180000184203 99.62 True local misassembly 2188669 2189196 211021 210494 CM091768.1 scf7180000184203 99.62 True indel: indel (<= 5bp) 2187548 2188660 212140 211028 CM091768.1 scf7180000184203 99.64 True fake: scaffold gap size wrong estimation (local) 2186507 2187126 213210 212591 CM091768.1 scf7180000184203 99.52 True indel: indel (<= 5bp) 2185666 2186506 214052 213212 CM091768.1 scf7180000184203 99.76 True indel: indel (> 5bp) 2185048 2185656 214661 214053 CM091768.1 scf7180000184203 99.67 True indel: stretch of mismatches 2184491 2185028 215218 214681 CM091768.1 scf7180000184203 99.44 True fake: scaffold gap size wrong estimation (local) 2182379 2183033 217317 216663 CM091768.1 scf7180000184203 99.24 True local misassembly 2181154 2181871 218548 217831 CM091768.1 scf7180000184203 97.91 True indel: indel (> 5bp) 2179927 2181106 219784 218605 CM091768.1 scf7180000184203 99.49 True indel: indel (<= 5bp) 2179241 2179926 220471 219786 CM091768.1 scf7180000184203 98.4 True indel: indel (<= 5bp) 2178158 2179240 221555 220473 CM091768.1 scf7180000184203 97.69 True indel: indel (> 5bp) 2177178 2177745 222491 221924 CM091768.1 scf7180000184203 99.47 True local misassembly 2175186 2176500 224493 223179 CM091768.1 scf7180000184203 99.32 True indel: indel (<= 5bp) 2173739 2174753 225938 224924 CM091768.1 scf7180000184203 98.72 True local misassembly 2171867 2172749 227815 226933 CM091768.1 scf7180000184203 99.43 True local misassembly 2170772 2171394 228741 228119 CM091768.1 scf7180000184203 98.88 True fake: scaffold gap size wrong estimation (local) 2168841 2169671 230489 229659 CM091768.1 scf7180000184203 99.28 True indel: indel (<= 5bp) 2167579 2168419 231747 230907 CM091768.1 scf7180000184203 97.38 True local misassembly 2166589 2167279 232438 231748 CM091768.1 scf7180000184203 99.13 True fake: scaffold gap size wrong estimation (local) 2165723 2166588 233343 232478 CM091768.1 scf7180000184203 98.5 True local misassembly 2163615 2164733 234748 233631 CM091768.1 scf7180000184203 98.13 True local misassembly 2161979 2162769 236430 235613 CM091768.1 scf7180000184203 96.12 True indel: indel (> 5bp) 2153629 2161823 245099 236599 CM091768.1 scf7180000184203 95.13 True local misassembly 2133722 2152643 263943 245285 CM091768.1 scf7180000184203 97.32 True fake: scaffold gap size wrong estimation (local) 2132785 2133412 264825 264198 CM091768.1 scf7180000184203 98.41 True indel: indel (<= 5bp) 2131136 2132784 266476 264828 CM091768.1 scf7180000184203 99.39 True indel: indel (<= 5bp) 2130272 2131130 267335 266477 CM091768.1 scf7180000184203 99.3 True fake: scaffold gap size wrong estimation (local) 2127256 2127959 269418 268715 CM091768.1 scf7180000184203 99.86 True indel: indel (<= 5bp) 2126594 2127255 270081 269420 CM091768.1 scf7180000184203 99.55 True local misassembly 2125411 2125934 271234 270711 CM091768.1 scf7180000184203 98.66 True local misassembly 2124250 2124793 271931 271388 CM091768.1 scf7180000184203 99.63 True indel: stretch of mismatches 2121419 2124057 274762 272124 CM091768.1 scf7180000184203 99.09 True indel: indel (<= 5bp) 2120079 2121389 276105 274795 CM091768.1 scf7180000184203 99.01 True indel: indel (<= 5bp) 2119171 2119731 277016 276456 CM091768.1 scf7180000184203 99.47 True fake: scaffold gap size wrong estimation (local) 2117749 2118503 278466 277712 CM091768.1 scf7180000184203 98.94 True fake: scaffold gap size wrong estimation (local) 2116456 2117029 279784 279211 CM091768.1 scf7180000184203 99.3 True indel: indel (> 5bp) 2115620 2116249 280599 279970 CM091768.1 scf7180000184203 99.84 True fake: scaffold gap size wrong estimation (local) 2112543 2114416 283353 281480 CM091768.1 scf7180000184203 99.36 True indel: indel (<= 5bp) 2111991 2112542 283906 283355 CM091768.1 scf7180000184203 100.0 True local misassembly 2109872 2110855 285891 284908 CM091768.1 scf7180000184203 99.59 True local misassembly 2108084 2108656 287062 286490 CM091768.1 scf7180000184203 99.65 True indel: indel (<= 5bp) 2107269 2108083 287879 287065 CM091768.1 scf7180000184203 99.51 True indel: indel (<= 5bp) 2105924 2107268 289225 287881 CM091768.1 scf7180000184203 99.33 True local misassembly 2102413 2104274 291374 289513 CM091768.1 scf7180000184203 99.36 True indel: indel (<= 5bp) 2101840 2102411 291946 291375 CM091768.1 scf7180000184203 100.0 True fake: scaffold gap size wrong estimation (local) 2098419 2100727 295351 293043 CM091768.1 scf7180000184203 99.26 True fake: scaffold gap size wrong estimation (local) 2096432 2097738 297763 296457 CM091768.1 scf7180000184203 99.62 True local misassembly 2095484 2096005 298858 298337 CM091768.1 scf7180000184203 99.43 True indel: indel (<= 5bp) 2094209 2095483 300134 298860 CM091768.1 scf7180000184203 98.67 True indel: indel (> 5bp) 2093104 2094106 301245 300243 CM091768.1 scf7180000184203 99.4 True indel: indel (<= 5bp) 2091947 2093102 302401 301246 CM091768.1 scf7180000184203 99.31 True indel: indel (<= 5bp) 2091224 2091946 303125 302403 CM091768.1 scf7180000184203 99.72 True indel: indel (<= 5bp) 2090613 2091223 303737 303127 CM091768.1 scf7180000184203 99.67 True local misassembly 2087832 2089275 306507 305064 CM091768.1 scf7180000184203 98.13 True local misassembly 2085633 2087400 308562 306795 CM091768.1 scf7180000184203 99.43 True indel: indel (<= 5bp) 2084671 2085248 309526 308949 CM091768.1 scf7180000184203 98.62 True indel: indel (> 5bp) 2083761 2084670 310448 309539 CM091768.1 scf7180000184203 99.23 True indel: indel (> 5bp) 2082280 2083289 311935 310926 CM091768.1 scf7180000184203 98.91 True local misassembly 2080186 2080718 313640 313108 CM091768.1 scf7180000184203 98.69 True indel: indel (<= 5bp) 2079542 2080185 314285 313642 CM091768.1 scf7180000184203 98.29 True indel: indel (> 5bp) 2076314 2079304 317468 314478 CM091768.1 scf7180000184203 99.4 True local misassembly 2072886 2075314 319897 317469 CM091768.1 scf7180000184203 98.44 True local misassembly 2070828 2071742 321478 320565 CM091768.1 scf7180000184203 99.13 True fake: scaffold gap size wrong estimation (local) 2067979 2070586 324252 321645 CM091768.1 scf7180000184203 99.27 True indel: indel (<= 5bp) 2067393 2067975 324835 324253 CM091768.1 scf7180000184203 98.46 True indel: indel (> 5bp) 2065794 2067363 326405 324836 CM091768.1 scf7180000184203 99.36 True indel: indel (<= 5bp) 2062294 2065793 329906 326407 CM091768.1 scf7180000184203 99.66 True indel: indel (<= 5bp) 2061423 2062293 330778 329908 CM091768.1 scf7180000184203 99.54 True fake: scaffold gap size wrong estimation (local) 2058480 2059115 332993 332358 CM091768.1 scf7180000184203 98.27 True indel: indel (<= 5bp) 2057958 2058478 333514 332994 CM091768.1 scf7180000184203 99.42 True fake: scaffold gap size wrong estimation (local) 2053492 2054315 337528 336705 CM091768.1 scf7180000184203 98.3 True indel: indel (<= 5bp) 2052166 2053486 338849 337529 CM091768.1 scf7180000184203 99.77 True indel: indel (<= 5bp) 2051101 2052165 339915 338851 CM091768.1 scf7180000184203 99.44 True local misassembly 2048054 2050838 342700 339916 CM091768.1 scf7180000184203 99.46 True indel: stretch of mismatches 2047087 2047927 343667 342827 CM091768.1 scf7180000184203 99.76 True local misassembly 2045092 2046138 344944 343898 CM091768.1 scf7180000184203 98.95 True local misassembly 2043460 2044382 345965 345043 CM091768.1 scf7180000184203 96.53 True local misassembly 2042335 2043262 346893 345966 CM091768.1 scf7180000184203 99.14 True indel: indel (<= 5bp) 2041141 2042333 348086 346894 CM091768.1 scf7180000184203 99.58 True indel: stretch of mismatches 2039801 2040774 349426 348453 CM091768.1 scf7180000184203 100.0 True indel: indel (<= 5bp) 2038806 2039313 350416 349909 CM091768.1 scf7180000184203 98.43 True fake: scaffold gap size wrong estimation (local) 2037759 2038805 351476 350430 CM091768.1 scf7180000184203 99.33 True local misassembly 2035320 2036350 353926 352896 CM091768.1 scf7180000184203 99.42 True indel: indel (> 5bp) 2033688 2035256 355533 353965 CM091768.1 scf7180000184203 99.17 True fake: scaffold gap size wrong estimation (local) 2032714 2033371 356534 355877 CM091768.1 scf7180000184203 99.54 True indel: indel (<= 5bp) 2031667 2032322 357580 356925 CM091768.1 scf7180000184203 100.0 True local misassembly 2029649 2030378 358535 357806 CM091768.1 scf7180000184203 98.22 True indel: indel (<= 5bp) 2025389 2029507 362800 358682 CM091768.1 scf7180000184203 99.39 True indel: indel (<= 5bp) 2024048 2025388 364142 362802 CM091768.1 scf7180000184203 99.33 True local misassembly 2021500 2023046 365689 364143 CM091768.1 scf7180000184203 98.45 True fake: scaffold gap size wrong estimation (local) 2018356 2020607 368768 366517 CM091768.1 scf7180000184203 99.42 True local misassembly 2017468 2018178 369479 368769 CM091768.1 scf7180000184203 99.58 True indel: indel (<= 5bp) 2016469 2017467 370479 369481 CM091768.1 scf7180000184203 95.4 True local misassembly 2014829 2016274 371925 370480 CM091768.1 scf7180000184203 99.65 True indel: indel (> 5bp) 2012577 2014308 374114 372383 CM091768.1 scf7180000184203 99.36 True indel: indel (> 5bp) 2011131 2012097 375553 374587 CM091768.1 scf7180000184203 99.9 True local misassembly 2009088 2009595 376868 376361 CM091768.1 scf7180000184203 99.41 True local misassembly 2007454 2008294 378508 377668 CM091768.1 scf7180000184203 99.05 True indel: indel (> 5bp) 2006434 2007287 379519 378666 CM091768.1 scf7180000184203 99.53 True indel: indel (<= 5bp) 2005702 2006303 380252 379651 CM091768.1 scf7180000184203 100.0 True fake: scaffold gap size wrong estimation (local) 2003400 2004968 382330 380765 CM091768.1 scf7180000184203 99.68 True fake: scaffold gap size wrong estimation (local) 2001424 2002254 383509 382679 CM091768.1 scf7180000184203 98.19 True indel: indel (<= 5bp) 2000445 2001423 384489 383511 CM091768.1 scf7180000184203 99.69 True indel: stretch of mismatches 1999266 2000267 385668 384667 CM091768.1 scf7180000184203 99.6 True local misassembly 1996901 1997988 386756 385669 CM091768.1 scf7180000184203 98.62 True indel: indel (<= 5bp) 1994232 1996898 389423 386757 CM091768.1 scf7180000184203 99.81 True indel: indel (<= 5bp) 1993346 1994149 390310 389507 CM091768.1 scf7180000184203 99.25 True indel: indel (<= 5bp) 1992070 1993001 391588 390657 CM091768.1 scf7180000184203 99.57 True local misassembly 1990498 1991338 393162 392322 CM091768.1 scf7180000184203 98.57 True local misassembly 1988074 1989160 395543 394457 CM091768.1 scf7180000184203 99.08 True local misassembly 1986238 1987447 396997 395788 CM091768.1 scf7180000184203 99.5 True indel: indel (<= 5bp) 1985302 1986179 397931 397054 CM091768.1 scf7180000184203 99.43 True local misassembly 1982746 1983824 399811 398733 CM091768.1 scf7180000184203 99.26 True local misassembly 1980212 1980772 402342 401782 CM091768.1 scf7180000184203 99.47 True indel: indel (> 5bp) 1979497 1980149 403045 402393 CM091768.1 scf7180000184203 99.54 True indel: indel (<= 5bp) 1978321 1979416 404224 403129 CM091768.1 scf7180000184203 99.45 True indel: indel (> 5bp) 1977556 1978307 404976 404225 CM091768.1 scf7180000184203 99.73 True local misassembly 1974418 1976588 408005 405835 CM091768.1 scf7180000184203 99.26 True indel: indel (> 5bp) 1973126 1974159 409303 408270 CM091768.1 scf7180000184203 99.23 True indel: indel (<= 5bp) 1972409 1972963 410022 409468 CM091768.1 scf7180000184203 100.0 True indel: indel (<= 5bp) 1971474 1972406 410955 410023 CM091768.1 scf7180000184203 98.71 True local misassembly 1970256 1970816 412174 411614 CM091768.1 scf7180000184203 99.29 True local misassembly 1966135 1967954 414911 413092 CM091768.1 scf7180000184203 99.18 True indel: indel (<= 5bp) 1965321 1966112 415723 414932 CM091768.1 scf7180000184203 99.75 True local misassembly 1963458 1964136 417251 416573 CM091768.1 scf7180000184203 100.0 True indel: indel (<= 5bp) 1962351 1963178 418361 417534 CM091768.1 scf7180000184203 99.52 True indel: indel (<= 5bp) 1961485 1962350 419228 418363 CM091768.1 scf7180000184203 99.54 True fake: scaffold gap size wrong estimation (local) 1960145 1960679 420564 420030 CM091768.1 scf7180000184203 99.81 True indel: indel (<= 5bp) 1959576 1960144 421134 420566 CM091768.1 scf7180000184203 98.42 True local misassembly 1925647 1958924 453649 421152 CM091768.1 scf7180000184203 96.63 True fake: scaffold gap size wrong estimation (local) 1920379 1925274 459305 454411 CM091768.1 scf7180000184203 99.43 True indel: indel (> 5bp) 1907831 1920326 471828 459405 CM091768.1 scf7180000184203 98.61 True indel: indel (> 5bp) 1891644 1907679 487958 471910 CM091768.1 scf7180000184203 99.24 True indel: stretch of mismatches 1890536 1891537 489066 488065 CM091768.1 scf7180000184203 99.1 True local misassembly 1888229 1890080 490918 489067 CM091768.1 scf7180000184203 99.08 True indel: indel (<= 5bp) 1887388 1887984 491756 491160 CM091768.1 scf7180000184203 100.0 True indel: indel (<= 5bp) 1885409 1886884 493731 492256 CM091768.1 scf7180000184203 99.73 True indel: indel (<= 5bp) 1884179 1885408 494962 493733 CM091768.1 scf7180000184203 99.59 True indel: indel (<= 5bp) 1883129 1883782 496013 495360 CM091768.1 scf7180000184203 99.54 True local misassembly 1881869 1882517 497276 496628 CM091768.1 scf7180000184203 99.69 True fake: not a misassembly (possible transposable element) 1837013 1838668 499244 497584 CM091768.1 scf7180000184203 98.59 True fake: not a misassembly (possible transposable element) 1864089 1879344 514446 499245 CM091768.1 scf7180000184203 98.2 True fake: scaffold gap size wrong estimation (local) 1862988 1863674 515474 514788 CM091768.1 scf7180000184203 99.85 True local misassembly 1861316 1862363 517149 516102 CM091768.1 scf7180000184203 99.71 True indel: indel (<= 5bp) 1860453 1861315 518013 517151 CM091768.1 scf7180000184203 99.88 True indel: stretch of mismatches 1859472 1859984 518994 518482 CM091768.1 scf7180000184203 99.61 True indel: indel (<= 5bp) 1858645 1859298 519823 519170 CM091768.1 scf7180000184203 98.47 True local misassembly 1855042 1856597 522075 520520 CM091768.1 scf7180000184203 99.49 True indel: indel (<= 5bp) 1854004 1854864 523118 522258 CM091768.1 scf7180000184203 97.33 True local misassembly 1852276 1853038 524621 523859 CM091768.1 scf7180000184203 99.48 True indel: indel (<= 5bp) 1850993 1852274 525903 524622 CM091768.1 scf7180000184203 99.61 True fake: scaffold gap size wrong estimation (local) 1846776 1848702 530114 528188 CM091768.1 scf7180000184203 99.07 True local misassembly 1843538 1844842 532673 531369 CM091768.1 scf7180000184203 99.54 True local misassembly 1841111 1841737 534930 534304 CM091768.1 scf7180000184203 99.04 True indel: indel (<= 5bp) 1840424 1840992 535622 535054 CM091768.1 scf7180000184203 99.82 True indel: indel (> 5bp) 1839694 1840194 536362 535862 CM091768.1 scf7180000184203 100.0 True fake: scaffold gap size wrong estimation (local) 1835399 1836344 539489 538544 CM091768.1 scf7180000184203 99.79 True local misassembly 1832202 1834787 542700 540115 CM091768.1 scf7180000184203 99.57 True indel: indel (<= 5bp) 1831557 1832149 543348 542756 CM091768.1 scf7180000184203 99.33 True indel: indel (<= 5bp) 1830614 1831556 544292 543350 CM091768.1 scf7180000184203 99.79 True indel: indel (<= 5bp) 1829773 1830613 545134 544294 CM091768.1 scf7180000184203 99.64 True local misassembly 1828453 1829156 546450 545747 CM091768.1 scf7180000184203 99.57 True indel: indel (<= 5bp) 1827657 1828452 547247 546452 CM091768.1 scf7180000184203 99.62 True indel: indel (<= 5bp) 1824659 1827655 550244 547248 CM091768.1 scf7180000184203 99.43 True indel: indel (<= 5bp) 1823741 1824625 551164 550280 CM091768.1 scf7180000184203 99.55 True local misassembly 1820765 1822942 553342 551165 CM091768.1 scf7180000184203 99.08 True indel: indel (> 5bp) 1819328 1820764 554786 553350 CM091768.1 scf7180000184203 99.1 True indel: indel (> 5bp) 1818159 1819225 555938 554872 CM091768.1 scf7180000184203 99.06 True local misassembly 1817065 1817900 556774 555939 CM091768.1 scf7180000184203 98.33 True fake: scaffold gap size wrong estimation (local) 1816217 1817064 557637 556790 CM091768.1 scf7180000184203 99.88 True fake: scaffold gap size wrong estimation (local) 1813924 1815375 559921 558470 CM091768.1 scf7180000184203 99.45 True fake: scaffold gap size wrong estimation (local) 1809913 1812911 563787 560780 CM091768.1 scf7180000184203 99.04 True local misassembly 1808178 1809594 565337 563921 CM091768.1 scf7180000184203 99.79 True fake: scaffold gap size wrong estimation (local) 1804389 1805039 568644 567994 CM091768.1 scf7180000184203 99.85 True indel: indel (<= 5bp) 1803668 1804388 569366 568646 CM091768.1 scf7180000184203 99.86 True indel: indel (<= 5bp) 1802976 1803665 570056 569367 CM091768.1 scf7180000184203 100.0 True indel: indel (<= 5bp) 1801937 1802973 571093 570057 CM091768.1 scf7180000184203 99.52 True local misassembly 1799129 1799946 573267 572450 CM091768.1 scf7180000184203 99.63 True indel: indel (> 5bp) 1796670 1798651 575714 573733 CM091768.1 scf7180000184203 99.7 True local misassembly 1794384 1794990 576496 575890 CM091768.1 scf7180000184203 99.67 True indel: indel (<= 5bp) 1793133 1794383 577748 576498 CM091768.1 scf7180000184203 99.36 True fake: scaffold gap size wrong estimation (local) 1790714 1791594 579966 579086 CM091768.1 scf7180000184203 99.32 True local misassembly 1787945 1790468 582490 579967 CM091768.1 scf7180000184203 98.3 True local misassembly 1785561 1786078 583465 582948 CM091768.1 scf7180000184203 99.61 True fake: scaffold gap size wrong estimation (local) 1776409 1787968 594924 583486 CM091768.1 scf7180000184203 97.8 True local misassembly 1762360 1770274 602849 594925 CM091768.1 scf7180000184203 98.59 True CONTIG scf7180000184203 602849 misassembled 6689508 6694316 36 4832 CM091760.1 scf7180000184204 98.91 True fake: scaffold gap size wrong estimation (local) 6695001 6719636 5130 29727 CM091760.1 scf7180000184204 99.4 True fake: scaffold gap size wrong estimation (local) 6719948 6789212 29863 98464 CM091760.1 scf7180000184204 97.84 True fake: not a misassembly (possible transposable element) 8140262 8142281 98465 100508 CM091764.1 scf7180000184204 98.34 True fake: not a misassembly (possible transposable element) 6789170 6796231 100529 107678 CM091760.1 scf7180000184204 98.77 True fake: scaffold gap size wrong estimation (local) 6796431 6824032 107861 135507 CM091760.1 scf7180000184204 99.39 True fake: scaffold gap size wrong estimation (local) 6824288 6878382 135892 189995 CM091760.1 scf7180000184204 99.71 True fake: scaffold gap size wrong estimation (local) 6878723 7114227 190016 425699 CM091760.1 scf7180000184204 99.36 True indel: indel (> 5bp) 7114296 7130446 425780 441949 CM091760.1 scf7180000184204 99.64 True fake: scaffold gap size wrong estimation (local) 7130709 7133329 442164 444784 CM091760.1 scf7180000184204 99.77 True indel: indel (> 5bp) 7133385 7162655 444848 474143 CM091760.1 scf7180000184204 99.46 True fake: scaffold gap size wrong estimation (local) 7162786 7194332 474249 505855 CM091760.1 scf7180000184204 99.18 True fake: scaffold gap size wrong estimation (local) 7194537 7260695 506016 572174 CM091760.1 scf7180000184204 98.86 True fake: scaffold gap size wrong estimation (local) 7260820 7304883 572281 616388 CM091760.1 scf7180000184204 99.04 True fake: scaffold gap size wrong estimation (local) 7305102 7417708 616581 729187 CM091760.1 scf7180000184204 99.17 True CONTIG scf7180000184204 729194 correct 14295835 14298897 3063 1 CM091758.1 scf7180000184205 99.64 True fake: scaffold gap size wrong estimation (local) 14289495 14293856 8954 4599 CM091758.1 scf7180000184205 99.09 True fake: scaffold gap size wrong estimation (local) 14287571 14288563 10597 9605 CM091758.1 scf7180000184205 99.4 True indel: indel (<= 5bp) 14286522 14287262 11649 10909 CM091758.1 scf7180000184205 98.11 True local misassembly 14283163 14284795 13987 12355 CM091758.1 scf7180000184205 99.51 True fake: scaffold gap size wrong estimation (local) 14281698 14282442 15451 14707 CM091758.1 scf7180000184205 99.33 True fake: scaffold gap size wrong estimation (local) 14280185 14281697 17027 15515 CM091758.1 scf7180000184205 99.67 True indel: indel (<= 5bp) 14278510 14280182 18700 17028 CM091758.1 scf7180000184205 99.7 True indel: indel (<= 5bp) 14277252 14278505 19954 18701 CM091758.1 scf7180000184205 99.6 True local misassembly 14274678 14275694 22443 21427 CM091758.1 scf7180000184205 99.9 True indel: indel (<= 5bp) 14270894 14274472 26229 22651 CM091758.1 scf7180000184205 99.5 True fake: scaffold gap size wrong estimation (local) 14264441 14268943 32135 27629 CM091758.1 scf7180000184205 99.31 True fake: scaffold gap size wrong estimation (local) 14261648 14263136 34311 32823 CM091758.1 scf7180000184205 99.73 True fake: scaffold gap size wrong estimation (local) 14259810 14260503 36230 35537 CM091758.1 scf7180000184205 98.7 True indel: indel (> 5bp) 14258761 14259800 37270 36231 CM091758.1 scf7180000184205 99.62 True fake: scaffold gap size wrong estimation (local) 14258036 14258760 38331 37607 CM091758.1 scf7180000184205 99.45 True relocation, scaffold gap is present, inconsistency = 14197 14239424 14243110 42744 39060 CM091758.1 scf7180000184205 99.73 True local misassembly 14237453 14238602 43894 42745 CM091758.1 scf7180000184205 100.0 True indel: indel (> 5bp) 14236227 14237446 45114 43895 CM091758.1 scf7180000184205 99.43 True local misassembly 14235592 14236226 46180 45546 CM091758.1 scf7180000184205 98.27 True fake: scaffold gap size wrong estimation (local) 14231699 14234157 48806 46348 CM091758.1 scf7180000184205 99.92 True fake: scaffold gap size wrong estimation (local) 14229623 14230786 51633 50470 CM091758.1 scf7180000184205 99.83 True indel: indel (> 5bp) 14226363 14229600 54871 51634 CM091758.1 scf7180000184205 99.69 True fake: scaffold gap size wrong estimation (local) 14223231 14226087 57980 55103 CM091758.1 scf7180000184205 99.41 True fake: scaffold gap size wrong estimation (local) 14220747 14222109 60090 58728 CM091758.1 scf7180000184205 99.71 True local misassembly 14217911 14220128 62734 60517 CM091758.1 scf7180000184205 99.91 True fake: scaffold gap size wrong estimation (local) 14215212 14217348 65533 63400 CM091758.1 scf7180000184205 99.16 True fake: scaffold gap size wrong estimation (local) 14206059 14214814 74682 65907 CM091758.1 scf7180000184205 99.52 True fake: scaffold gap size wrong estimation (local) 14200234 14204932 80306 75604 CM091758.1 scf7180000184205 99.15 True fake: scaffold gap size wrong estimation (local) 14190305 14199287 89503 80884 CM091758.1 scf7180000184205 95.46 True fake: scaffold gap size wrong estimation (local) 14185551 14189820 94026 89727 CM091758.1 scf7180000184205 98.14 True fake: scaffold gap size wrong estimation (local) 14178325 14184167 100568 94728 CM091758.1 scf7180000184205 99.03 True translocation 3702908 3703657 101076 101825 CM091761.1 scf7180000184205 99.2 True fake: scaffold gap size wrong estimation (local) 3704731 3705429 103428 104126 CM091761.1 scf7180000184205 99.0 True indel: indel (<= 5bp) 3705430 3706088 104128 104786 CM091761.1 scf7180000184205 99.24 True fake: scaffold gap size wrong estimation (local) 3708066 3718921 106960 117871 CM091761.1 scf7180000184205 98.75 True fake: scaffold gap size wrong estimation (local) 3719467 3727189 118116 125854 CM091761.1 scf7180000184205 99.21 True fake: scaffold gap size wrong estimation (local) 3727511 3730298 125946 128736 CM091761.1 scf7180000184205 99.18 True fake: scaffold gap size wrong estimation (local) 3731146 3739145 129091 137091 CM091761.1 scf7180000184205 99.26 True fake: scaffold gap size wrong estimation (local) 3739355 3740365 137198 138208 CM091761.1 scf7180000184205 98.81 True fake: scaffold gap size wrong estimation (local) 3740513 3744073 138340 141887 CM091761.1 scf7180000184205 98.77 True fake: scaffold gap size wrong estimation (local) 3745111 3765314 142410 162620 CM091761.1 scf7180000184205 99.24 True indel: indel (> 5bp) 3765400 3766194 162675 163469 CM091761.1 scf7180000184205 99.87 True indel: indel (<= 5bp) 3766197 3767025 163470 164298 CM091761.1 scf7180000184205 99.52 True local misassembly 3767673 3769436 164947 166710 CM091761.1 scf7180000184205 99.77 True indel: indel (<= 5bp) 3769556 3770614 166827 167885 CM091761.1 scf7180000184205 99.53 True indel: stretch of mismatches 3770677 3771527 167948 168798 CM091761.1 scf7180000184205 100.0 True fake: scaffold gap size wrong estimation (local) 3772784 3773608 170049 170873 CM091761.1 scf7180000184205 99.52 True local misassembly 3773753 3775056 170874 172177 CM091761.1 scf7180000184205 98.31 True local misassembly 3775390 3776321 172178 173109 CM091761.1 scf7180000184205 97.1 True indel: indel (<= 5bp) 3776527 3778395 173313 175181 CM091761.1 scf7180000184205 99.2 True local misassembly 3779028 3780284 175182 176438 CM091761.1 scf7180000184205 99.12 True fake: scaffold gap size wrong estimation (local) 3780410 3796978 176526 193053 CM091761.1 scf7180000184205 97.33 True fake: scaffold gap size wrong estimation (local) 3798157 3799115 193788 194756 CM091761.1 scf7180000184205 98.35 True fake: scaffold gap size wrong estimation (local) 3800220 3833777 195555 228231 CM091761.1 scf7180000184205 96.36 True indel: indel (> 5bp) 3833863 3835277 228266 229669 CM091761.1 scf7180000184205 98.17 True CONTIG scf7180000184205 229669 misassembled 2297171 2297838 3015 2348 CM091764.1 scf7180000184206 100.0 True fake: scaffold gap size wrong estimation (local) 2273515 2296328 27594 4110 CM091764.1 scf7180000184206 97.3 True fake: scaffold gap size wrong estimation (local) 2272161 2273175 28754 27740 CM091764.1 scf7180000184206 100.0 True fake: scaffold gap size wrong estimation (local) 2268293 2270919 32190 29564 CM091764.1 scf7180000184206 99.81 True fake: scaffold gap size wrong estimation (local) 2266752 2267862 33707 32588 CM091764.1 scf7180000184206 99.64 True fake: scaffold gap size wrong estimation (local) 2254701 2266155 45064 33902 CM091764.1 scf7180000184206 97.38 True fake: scaffold gap size wrong estimation (local) 2240657 2250707 58511 48745 CM091764.1 scf7180000184206 96.23 True fake: scaffold gap size wrong estimation (local) 2229185 2239499 69730 59415 CM091764.1 scf7180000184206 99.68 True fake: scaffold gap size wrong estimation (local) 2225709 2228269 72874 70295 CM091764.1 scf7180000184206 99.69 True fake: scaffold gap size wrong estimation (local) 2224781 2225470 73768 73079 CM091764.1 scf7180000184206 99.86 True fake: scaffold gap size wrong estimation (local) 2222867 2223614 75665 74918 CM091764.1 scf7180000184206 97.19 True local misassembly 2221497 2222640 76809 75666 CM091764.1 scf7180000184206 99.83 True fake: scaffold gap size wrong estimation (local) 2219502 2220715 78731 77518 CM091764.1 scf7180000184206 100.0 True local misassembly 2214397 2215083 79530 78844 CM091764.1 scf7180000184206 100.0 True indel: indel (<= 5bp) 2213639 2214396 80289 79532 CM091764.1 scf7180000184206 100.0 True indel: indel (> 5bp) 2212595 2213638 81343 80300 CM091764.1 scf7180000184206 100.0 True translocation 8218386 8219214 81344 82172 CM091767.1 scf7180000184206 100.0 True fake: scaffold gap size wrong estimation (local) 8220019 8221865 82820 84666 CM091767.1 scf7180000184206 99.95 True translocation, scaffold gap is present 2210278 2211004 85436 84710 CM091764.1 scf7180000184206 99.86 True fake: scaffold gap size wrong estimation (local) 2197676 2208808 97296 86165 CM091764.1 scf7180000184206 99.96 True indel: indel (<= 5bp) 2191108 2197540 103923 97427 CM091764.1 scf7180000184206 99.64 True fake: scaffold gap size wrong estimation (local) 2171741 2190801 123130 104069 CM091764.1 scf7180000184206 99.95 True fake: scaffold gap size wrong estimation (local) 2167413 2170089 127111 124435 CM091764.1 scf7180000184206 99.78 True fake: scaffold gap size wrong estimation (local) 2164975 2165959 129047 128063 CM091764.1 scf7180000184206 99.7 True fake: scaffold gap size wrong estimation (local) 2156394 2164154 137079 129566 CM091764.1 scf7180000184206 96.71 True fake: scaffold gap size wrong estimation (local) 2150449 2152864 141504 139084 CM091764.1 scf7180000184206 99.79 True fake: scaffold gap size wrong estimation (local) 2148082 2149911 143984 142130 CM091764.1 scf7180000184206 99.56 True fake: not a misassembly (possible transposable element) 15955487 15955998 145034 144523 CM091751.1 scf7180000184206 100.0 True fake: not a misassembly (possible transposable element) 2144652 2146029 146464 145087 CM091764.1 scf7180000184206 99.8 True translocation 15909768 15955350 191872 146465 CM091751.1 scf7180000184206 99.11 True fake: scaffold gap size wrong estimation (local) 15824717 15909516 276636 192075 CM091751.1 scf7180000184206 99.08 True fake: scaffold gap size wrong estimation (local) 15820697 15821535 280176 279338 CM091751.1 scf7180000184206 99.28 True indel: indel (> 5bp) 15815802 15820365 285079 280516 CM091751.1 scf7180000184206 99.76 True indel: indel (<= 5bp) 15815089 15815801 285793 285081 CM091751.1 scf7180000184206 98.6 True fake: scaffold gap size wrong estimation (local) 15813477 15814677 287246 286046 CM091751.1 scf7180000184206 99.83 True indel: indel (<= 5bp) 15811094 15813475 289628 287247 CM091751.1 scf7180000184206 99.79 True fake: scaffold gap size wrong estimation (local) 15808696 15810300 291699 290095 CM091751.1 scf7180000184206 98.51 True fake: scaffold gap size wrong estimation (local) 15694515 15808459 405813 291873 CM091751.1 scf7180000184206 99.47 True indel: indel (> 5bp) 15671336 15694450 428814 405921 CM091751.1 scf7180000184206 98.45 True fake: scaffold gap size wrong estimation (local) 15655395 15671158 444176 428950 CM091751.1 scf7180000184206 95.63 True fake: scaffold gap size wrong estimation (local) 15654811 15655356 444793 444248 CM091751.1 scf7180000184206 100.0 True fake: scaffold gap size wrong estimation (local) 15644044 15654430 455329 445067 CM091751.1 scf7180000184206 97.24 True fake: scaffold gap size wrong estimation (local) 15484499 15643792 614819 455531 CM091751.1 scf7180000184206 99.59 True fake: scaffold gap size wrong estimation (local) 15481691 15483592 617162 615261 CM091751.1 scf7180000184206 99.89 True translocation, scaffold gap is present 8216396 8217571 617814 618968 CM091767.1 scf7180000184206 97.92 True CONTIG scf7180000184206 618968 misassembled 6316295 6418859 102571 1918 CM091763.1 scf7180000184207 97.59 True fake: scaffold gap size wrong estimation (local) 6314074 6315478 104924 103519 CM091763.1 scf7180000184207 99.79 True fake: scaffold gap size wrong estimation (local) 6169423 6310826 247945 106944 CM091763.1 scf7180000184207 98.99 True fake: scaffold gap size wrong estimation (local) 6158287 6169221 259118 248128 CM091763.1 scf7180000184207 98.96 True translocation 5719226 5840384 259119 381960 CM091759.1 scf7180000184207 98.16 True fake: not a misassembly (possible transposable element) 14894748 14895542 382812 382018 CM091754.1 scf7180000184207 100.0 True fake: not a misassembly (possible transposable element) 5842081 5853072 382841 393607 CM091759.1 scf7180000184207 96.46 True fake: scaffold gap size wrong estimation (local) 5854424 6043816 394462 583723 CM091759.1 scf7180000184207 99.08 True fake: not a misassembly (possible transposable element) 2676941 2678124 585235 584051 CM091754.1 scf7180000184207 99.75 True fake: not a misassembly (possible transposable element) 6044013 6061055 585286 601780 CM091759.1 scf7180000184207 96.22 True fake: scaffold gap size wrong estimation (local) 6061245 6071192 601925 611661 CM091759.1 scf7180000184207 96.99 True fake: scaffold gap size wrong estimation (local) 6071823 6110182 611862 650229 CM091759.1 scf7180000184207 99.66 True fake: scaffold gap size wrong estimation (local) 6110427 6114672 650475 654734 CM091759.1 scf7180000184207 99.37 True fake: scaffold gap size wrong estimation (local) 6114910 6129774 654928 669758 CM091759.1 scf7180000184207 99.27 True fake: scaffold gap size wrong estimation (local) 6130057 6295729 669844 835630 CM091759.1 scf7180000184207 99.56 True fake: scaffold gap size wrong estimation (local) 6295920 6317376 835752 856941 CM091759.1 scf7180000184207 98.36 True indel: indel (> 5bp) 6317425 6330825 856945 870423 CM091759.1 scf7180000184207 99.15 True fake: scaffold gap size wrong estimation (local) 6331327 6355311 870957 894970 CM091759.1 scf7180000184207 99.47 True fake: scaffold gap size wrong estimation (local) 6355678 6386307 895088 925505 CM091759.1 scf7180000184207 98.72 True indel: stretch of mismatches 6386380 6401551 925578 940590 CM091759.1 scf7180000184207 98.29 True indel: indel (<= 5bp) 6401630 6421093 940668 960121 CM091759.1 scf7180000184207 99.41 True indel: indel (> 5bp) 6421124 6429100 960175 968155 CM091759.1 scf7180000184207 99.76 True fake: scaffold gap size wrong estimation (local) 6429709 6432401 968437 971143 CM091759.1 scf7180000184207 98.89 True fake: scaffold gap size wrong estimation (local) 6432679 6436537 971311 975186 CM091759.1 scf7180000184207 99.43 True fake: scaffold gap size wrong estimation (local) 6436718 6449368 975334 988000 CM091759.1 scf7180000184207 99.36 True fake: scaffold gap size wrong estimation (local) 6449956 6459163 988188 997141 CM091759.1 scf7180000184207 96.29 True fake: scaffold gap size wrong estimation (local) 6459476 6473229 997291 1011106 CM091759.1 scf7180000184207 99.34 True local misassembly 6477623 6481866 1011107 1015359 CM091759.1 scf7180000184207 99.09 True indel: indel (> 5bp) 6481938 6484752 1015452 1018273 CM091759.1 scf7180000184207 98.39 True fake: scaffold gap size wrong estimation (local) 6484903 6486823 1018520 1020440 CM091759.1 scf7180000184207 99.58 True fake: scaffold gap size wrong estimation (local) 6486973 6487708 1022504 1023239 CM091759.1 scf7180000184207 99.32 True fake: scaffold gap size wrong estimation (local) 6488997 6489598 1024494 1025095 CM091759.1 scf7180000184207 99.83 True indel: indel (<= 5bp) 6489923 6490564 1025423 1026064 CM091759.1 scf7180000184207 99.53 True indel: stretch of mismatches 6490825 6491576 1026325 1027076 CM091759.1 scf7180000184207 99.47 True indel: indel (<= 5bp) 6491577 6492254 1027078 1027755 CM091759.1 scf7180000184207 99.85 True indel: indel (<= 5bp) 6492325 6493138 1027823 1028636 CM091759.1 scf7180000184207 99.51 True fake: scaffold gap size wrong estimation (local) 6493849 6494429 1029178 1029758 CM091759.1 scf7180000184207 99.48 True fake: scaffold gap size wrong estimation (local) 6494556 6496055 1029903 1031402 CM091759.1 scf7180000184207 99.6 True indel: indel (<= 5bp) 6496057 6497576 1031403 1032922 CM091759.1 scf7180000184207 99.74 True indel: indel (<= 5bp) 6497577 6499468 1032924 1034815 CM091759.1 scf7180000184207 99.52 True fake: scaffold gap size wrong estimation (local) 6499690 6500292 1035031 1035633 CM091759.1 scf7180000184207 99.83 True local misassembly 6500812 6502332 1036147 1037667 CM091759.1 scf7180000184207 99.34 True fake: scaffold gap size wrong estimation (local) 6503638 6504204 1039006 1039572 CM091759.1 scf7180000184207 99.29 True indel: indel (<= 5bp) 6504208 6505341 1039573 1040706 CM091759.1 scf7180000184207 99.82 True fake: scaffold gap size wrong estimation (local) 6505663 6506659 1041029 1042025 CM091759.1 scf7180000184207 99.4 True fake: scaffold gap size wrong estimation (local) 6507435 6510950 1042765 1046280 CM091759.1 scf7180000184207 99.83 True indel: indel (<= 5bp) 6510952 6512023 1046281 1047352 CM091759.1 scf7180000184207 99.53 True indel: indel (> 5bp) 6512032 6519330 1047353 1054651 CM091759.1 scf7180000184207 99.6 True indel: indel (<= 5bp) 6519331 6522198 1054653 1057520 CM091759.1 scf7180000184207 99.69 True indel: indel (<= 5bp) 6522199 6523544 1057522 1058867 CM091759.1 scf7180000184207 99.78 True local misassembly 6526824 6527344 1059985 1060505 CM091759.1 scf7180000184207 99.81 True indel: stretch of mismatches 6527613 6529077 1060774 1062238 CM091759.1 scf7180000184207 99.66 True local misassembly 6530126 6531111 1063293 1064278 CM091759.1 scf7180000184207 99.9 True indel: indel (<= 5bp) 6531113 6531804 1064279 1064970 CM091759.1 scf7180000184207 99.28 True indel: indel (<= 5bp) 6531808 6532511 1064971 1065674 CM091759.1 scf7180000184207 99.57 True indel: indel (> 5bp) 6532665 6533231 1065855 1066421 CM091759.1 scf7180000184207 98.41 True indel: indel (<= 5bp) 6533234 6535486 1066422 1068674 CM091759.1 scf7180000184207 99.56 True indel: indel (> 5bp) 6535487 6536308 1068685 1069506 CM091759.1 scf7180000184207 99.88 True fake: scaffold gap size wrong estimation (local) 6536561 6545598 1069748 1078782 CM091759.1 scf7180000184207 99.24 True CONTIG scf7180000184207 1079550 misassembled 10700065 10700865 3249 2448 CM091765.1 scf7180000184208 97.02 True fake: scaffold gap size wrong estimation (local) 10678733 10697590 24210 5371 CM091765.1 scf7180000184208 99.78 True fake: scaffold gap size wrong estimation (local) 10613277 10678634 88701 24298 CM091765.1 scf7180000184208 98.48 True fake: scaffold gap size wrong estimation (local) 10610442 10613132 91502 88861 CM091765.1 scf7180000184208 97.84 True fake: scaffold gap size wrong estimation (local) 10608636 10609959 93363 92039 CM091765.1 scf7180000184208 99.62 True fake: scaffold gap size wrong estimation (local) 10606020 10608039 95960 94029 CM091765.1 scf7180000184208 95.06 True fake: scaffold gap size wrong estimation (local) 10604408 10605624 97896 96680 CM091765.1 scf7180000184208 99.84 True fake: scaffold gap size wrong estimation (local) 10603331 10603842 99096 98585 CM091765.1 scf7180000184208 99.41 True fake: scaffold gap size wrong estimation (local) 10600308 10601764 101836 100380 CM091765.1 scf7180000184208 99.73 True indel: indel (<= 5bp) 10597928 10600096 104218 102050 CM091765.1 scf7180000184208 99.95 True fake: scaffold gap size wrong estimation (local) 10596410 10597782 105723 104352 CM091765.1 scf7180000184208 99.93 True fake: scaffold gap size wrong estimation (local) 10594715 10595601 107542 106657 CM091765.1 scf7180000184208 99.53 True fake: scaffold gap size wrong estimation (local) 10565523 10593465 135412 107832 CM091765.1 scf7180000184208 97.48 True fake: scaffold gap size wrong estimation (local) 10496176 10565382 204980 135500 CM091765.1 scf7180000184208 98.83 True fake: scaffold gap size wrong estimation (local) 10491741 10492473 207913 207172 CM091765.1 scf7180000184208 97.57 True fake: scaffold gap size wrong estimation (local) 10489613 10490840 210030 208803 CM091765.1 scf7180000184208 99.92 True fake: scaffold gap size wrong estimation (local) 10479261 10489231 220691 210873 CM091765.1 scf7180000184208 98.1 True fake: scaffold gap size wrong estimation (local) 10472755 10477558 226312 221504 CM091765.1 scf7180000184208 99.79 True fake: scaffold gap size wrong estimation (local) 10470530 10471943 228304 226890 CM091765.1 scf7180000184208 99.79 True translocation, scaffold gap is present 2139131 2141354 233359 231136 CM091764.1 scf7180000184208 100.0 True CONTIG scf7180000184208 234390 misassembled 3475612 3476536 925 1 CM091768.1 scf7180000184209 100.0 True local misassembly 3472450 3474509 4089 2030 CM091768.1 scf7180000184209 99.51 True local misassembly 3468299 3472449 8706 4556 CM091768.1 scf7180000184209 99.57 True local misassembly 3466157 3467312 10855 9700 CM091768.1 scf7180000184209 99.83 True indel: stretch of mismatches 3464467 3465762 12545 11250 CM091768.1 scf7180000184209 99.0 True indel: indel (<= 5bp) 3463528 3464465 13483 12546 CM091768.1 scf7180000184209 99.04 True indel: indel (<= 5bp) 3462292 3463526 14718 13484 CM091768.1 scf7180000184209 99.11 True indel: indel (<= 5bp) 3461281 3462220 15731 14792 CM091768.1 scf7180000184209 99.68 True indel: stretch of mismatches 3460443 3461120 16569 15892 CM091768.1 scf7180000184209 96.17 True fake: scaffold gap size wrong estimation (local) 3458975 3459672 17784 17087 CM091768.1 scf7180000184209 99.57 True indel: indel (> 5bp) 3457196 3458565 19535 18166 CM091768.1 scf7180000184209 99.05 True indel: indel (<= 5bp) 3455873 3456786 20861 19948 CM091768.1 scf7180000184209 99.02 True local misassembly 3454794 3455368 21944 21370 CM091768.1 scf7180000184209 100.0 True fake: scaffold gap size wrong estimation (local) 3452512 3453338 23583 22757 CM091768.1 scf7180000184209 99.52 True indel: indel (<= 5bp) 3451941 3452511 24156 23586 CM091768.1 scf7180000184209 98.95 True local misassembly 3448461 3450291 27627 25797 CM091768.1 scf7180000184209 99.67 True indel: indel (<= 5bp) 3447913 3448459 28174 27628 CM091768.1 scf7180000184209 99.82 True fake: not a misassembly (possible transposable element) 561560 563022 28196 29658 CM091752.1 scf7180000184209 99.93 True fake: not a misassembly (possible transposable element) 3416892 3448034 60467 29659 CM091768.1 scf7180000184209 98.52 True fake: scaffold gap size wrong estimation (local) 3415858 3416554 61556 60861 CM091768.1 scf7180000184209 99.0 True fake: scaffold gap size wrong estimation (local) 3414702 3415687 62965 61981 CM091768.1 scf7180000184209 98.28 True relocation, scaffold gap is present, inconsistency = 61787 3350899 3351967 64979 63913 CM091768.1 scf7180000184209 99.81 True fake: scaffold gap size wrong estimation (local) 3349885 3350571 66278 65592 CM091768.1 scf7180000184209 98.11 True fake: scaffold gap size wrong estimation (local) 3346716 3348142 69330 67916 CM091768.1 scf7180000184209 97.97 True relocation, scaffold gap is present, inconsistency = 21110 3322917 3323930 72019 71006 CM091768.1 scf7180000184209 98.42 True indel: indel (<= 5bp) 3321848 3322739 73085 72194 CM091768.1 scf7180000184209 96.86 True relocation, scaffold gap is present, inconsistency = -36076 3356801 3357525 74208 73484 CM091768.1 scf7180000184209 99.86 True fake: scaffold gap size wrong estimation (local) 3354261 3355044 76239 75456 CM091768.1 scf7180000184209 99.23 True indel: stretch of mismatches 3353475 3354173 77025 76327 CM091768.1 scf7180000184209 99.86 True relocation, scaffold gap is present, inconsistency = -60025 3412488 3413478 78034 77047 CM091768.1 scf7180000184209 98.99 True fake: scaffold gap size wrong estimation (local) 3410152 3410746 80056 79462 CM091768.1 scf7180000184209 96.3 True relocation, inconsistency = 103369 3305614 3306613 81225 80226 CM091768.1 scf7180000184209 96.8 True indel: indel (<= 5bp) 3277163 3305404 109404 81436 CM091768.1 scf7180000184209 98.33 True relocation, scaffold gap is present, inconsistency = -47973 3324551 3325061 109989 109479 CM091768.1 scf7180000184209 99.69 True relocation, inconsistency = 2794165 6119227 6121857 109990 112620 CM091768.1 scf7180000184209 99.96 True translocation 8970147 8972507 114971 112621 CM091753.1 scf7180000184209 99.33 True translocation, scaffold gap is present 3217002 3276926 173299 115039 CM091768.1 scf7180000184209 95.15 True indel: indel (> 5bp) 3215862 3216881 174421 173409 CM091768.1 scf7180000184209 98.53 True fake: scaffold gap size wrong estimation (local) 3212689 3213823 177225 176091 CM091768.1 scf7180000184209 99.82 True indel: indel (<= 5bp) 3212052 3212688 177863 177227 CM091768.1 scf7180000184209 99.53 True indel: stretch of mismatches 3211355 3211943 178560 177972 CM091768.1 scf7180000184209 98.98 True local misassembly 3208444 3210361 180494 178577 CM091768.1 scf7180000184209 99.22 True fake: scaffold gap size wrong estimation (local) 3207310 3208171 182098 181237 CM091768.1 scf7180000184209 96.64 True indel: indel (<= 5bp) 3206759 3207308 182648 182099 CM091768.1 scf7180000184209 99.27 True indel: indel (> 5bp) 3206002 3206733 183394 182663 CM091768.1 scf7180000184209 97.81 True fake: scaffold gap size wrong estimation (local) 3204099 3205304 185417 184203 CM091768.1 scf7180000184209 96.44 True fake: scaffold gap size wrong estimation (local) 3191210 3203525 198137 185919 CM091768.1 scf7180000184209 97.67 True fake: scaffold gap size wrong estimation (local) 3169282 3189819 218542 198428 CM091768.1 scf7180000184209 96.0 True fake: scaffold gap size wrong estimation (local) 3167679 3168955 220407 219130 CM091768.1 scf7180000184209 99.3 True fake: scaffold gap size wrong estimation (local) 3164201 3165527 222190 220861 CM091768.1 scf7180000184209 96.23 True fake: scaffold gap size wrong estimation (local) 3162000 3162671 224108 223437 CM091768.1 scf7180000184209 99.26 True indel: indel (<= 5bp) 3160295 3161967 225815 224143 CM091768.1 scf7180000184209 99.64 True indel: indel (<= 5bp) 3158692 3160129 227421 225984 CM091768.1 scf7180000184209 98.89 True indel: indel (<= 5bp) 3158152 3158691 227965 227426 CM091768.1 scf7180000184209 99.26 True local misassembly 3154741 3155995 230777 229523 CM091768.1 scf7180000184209 99.52 True local misassembly 3152956 3154287 232464 231133 CM091768.1 scf7180000184209 99.47 True local misassembly 3151148 3152126 234282 233304 CM091768.1 scf7180000184209 99.49 True indel: indel (> 5bp) 3124282 3151047 261095 234351 CM091768.1 scf7180000184209 97.39 True local misassembly 3121089 3123764 264017 261342 CM091768.1 scf7180000184209 99.4 True indel: indel (> 5bp) 3118976 3120845 266124 264255 CM091768.1 scf7180000184209 99.2 True fake: scaffold gap size wrong estimation (local) 3115767 3116641 268147 267273 CM091768.1 scf7180000184209 98.86 True local misassembly 3114578 3115167 269331 268742 CM091768.1 scf7180000184209 99.83 True indel: indel (<= 5bp) 3113913 3114577 269997 269333 CM091768.1 scf7180000184209 99.25 True indel: indel (<= 5bp) 3112591 3113742 271321 270170 CM091768.1 scf7180000184209 99.31 True local misassembly 3107455 3108193 276472 275734 CM091768.1 scf7180000184209 99.05 True indel: indel (> 5bp) 3106263 3107338 277715 276640 CM091768.1 scf7180000184209 99.16 True indel: stretch of mismatches 3105526 3106177 278452 277801 CM091768.1 scf7180000184209 99.39 True local misassembly 3103352 3104401 280620 279571 CM091768.1 scf7180000184209 99.52 True indel: indel (> 5bp) 3100775 3103304 283128 280679 CM091768.1 scf7180000184209 96.29 True fake: scaffold gap size wrong estimation (local) 3095290 3100762 288614 283225 CM091768.1 scf7180000184209 95.18 True translocation 958032 959426 290007 288615 CM091752.1 scf7180000184209 98.58 True fake: scaffold gap size wrong estimation (local) 955687 957715 292459 290442 CM091752.1 scf7180000184209 98.42 True fake: scaffold gap size wrong estimation (local) 943359 955536 304669 292622 CM091752.1 scf7180000184209 98.04 True CONTIG scf7180000184209 304669 misassembled 2289116 2293273 4153 1 CM091753.1 scf7180000184210 99.64 True fake: scaffold gap size wrong estimation (local) 2277558 2288992 15676 4230 CM091753.1 scf7180000184210 99.76 True fake: scaffold gap size wrong estimation (local) 2274537 2277389 18631 15779 CM091753.1 scf7180000184210 99.75 True relocation, scaffold gap is present, inconsistency = 44246 2197877 2229379 51810 19543 CM091753.1 scf7180000184210 97.45 True fake: scaffold gap size wrong estimation (local) 2177432 2197067 72418 52764 CM091753.1 scf7180000184210 99.72 True fake: scaffold gap size wrong estimation (local) 2106217 2177231 143493 72810 CM091753.1 scf7180000184210 99.34 True local misassembly 2105437 2106265 144572 143745 CM091753.1 scf7180000184210 99.4 True fake: scaffold gap size wrong estimation (local) 2093293 2102307 156724 147693 CM091753.1 scf7180000184210 99.96 True local misassembly 1984394 2092749 265705 156918 CM091753.1 scf7180000184210 99.0 True fake: scaffold gap size wrong estimation (local) 1929785 1984028 319723 265813 CM091753.1 scf7180000184210 99.25 True fake: scaffold gap size wrong estimation (local) 1917428 1929403 331740 320142 CM091753.1 scf7180000184210 95.82 True fake: scaffold gap size wrong estimation (local) 1909891 1916950 338908 331852 CM091753.1 scf7180000184210 99.9 True fake: scaffold gap size wrong estimation (local) 1889641 1909698 359114 339055 CM091753.1 scf7180000184210 99.65 True fake: scaffold gap size wrong estimation (local) 1878559 1889474 370129 359198 CM091753.1 scf7180000184210 99.56 True fake: scaffold gap size wrong estimation (local) 1853076 1877500 395004 370553 CM091753.1 scf7180000184210 99.55 True fake: not a misassembly (possible transposable element) 11812433 11813343 396007 395097 CM091756.1 scf7180000184210 99.46 True fake: not a misassembly (possible transposable element) 1821208 1852921 427578 396008 CM091753.1 scf7180000184210 98.81 True CONTIG scf7180000184210 427713 misassembled 3875423 3879941 17 4535 CM091768.1 scf7180000184211 99.91 True fake: scaffold gap size wrong estimation (local) 3880694 3882495 4721 6522 CM091768.1 scf7180000184211 99.94 True fake: scaffold gap size wrong estimation (local) 3882745 3884973 6955 9183 CM091768.1 scf7180000184211 100.0 True fake: scaffold gap size wrong estimation (local) 3885585 3886167 9389 9969 CM091768.1 scf7180000184211 98.8 True fake: scaffold gap size wrong estimation (local) 3886362 3887403 10227 11268 CM091768.1 scf7180000184211 99.9 True fake: scaffold gap size wrong estimation (local) 3887905 3888523 11601 12219 CM091768.1 scf7180000184211 99.84 True fake: scaffold gap size wrong estimation (local) 3888749 3891529 12351 15144 CM091768.1 scf7180000184211 99.26 True fake: scaffold gap size wrong estimation (local) 3892796 3894804 15920 17958 CM091768.1 scf7180000184211 99.16 True fake: scaffold gap size wrong estimation (local) 3897870 3899605 20802 22537 CM091768.1 scf7180000184211 99.71 True fake: scaffold gap size wrong estimation (local) 3899606 3901833 22951 25178 CM091768.1 scf7180000184211 97.35 True fake: scaffold gap size wrong estimation (local) 3903077 3907068 26204 30221 CM091768.1 scf7180000184211 99.29 True translocation, scaffold gap is present 542443 543701 31519 30261 CM091764.1 scf7180000184211 99.84 True fake: scaffold gap size wrong estimation (local) 541553 542230 32748 32071 CM091764.1 scf7180000184211 99.71 True translocation, scaffold gap is present 3934012 3934719 32962 33651 CM091768.1 scf7180000184211 96.33 True fake: not a misassembly (possible transposable element) 6301468 6302856 35094 33706 CM091768.1 scf7180000184211 100.0 True fake: not a misassembly (possible transposable element) 3935975 3937805 35145 36975 CM091768.1 scf7180000184211 99.45 True relocation, scaffold gap is present, inconsistency = 2360112 6297968 6299770 38828 37026 CM091768.1 scf7180000184211 99.89 True fake: scaffold gap size wrong estimation (local) 6294752 6297060 42410 40101 CM091768.1 scf7180000184211 99.87 True fake: scaffold gap size wrong estimation (local) 6290384 6293562 47080 43902 CM091768.1 scf7180000184211 100.0 True relocation, scaffold gap is present, inconsistency = 2374774 3911483 3915558 47132 51210 CM091768.1 scf7180000184211 99.9 True fake: scaffold gap size wrong estimation (local) 3916132 3918949 51557 54374 CM091768.1 scf7180000184211 99.68 True local misassembly 3919513 3921165 54375 56027 CM091768.1 scf7180000184211 96.25 True fake: scaffold gap size wrong estimation (local) 3921657 3926452 56464 61259 CM091768.1 scf7180000184211 99.83 True relocation, scaffold gap is present, inconsistency = 17027 3943500 3974897 61280 92719 CM091768.1 scf7180000184211 99.82 True fake: scaffold gap size wrong estimation (local) 3975016 4023464 93226 142268 CM091768.1 scf7180000184211 98.62 True translocation, scaffold gap is present 3256924 3265497 152156 143405 CM091752.1 scf7180000184211 97.86 True translocation, scaffold gap is present 18202341 18267269 152264 217373 CM091753.1 scf7180000184211 99.1 True fake: scaffold gap size wrong estimation (local) 18268316 18269905 218077 219662 CM091753.1 scf7180000184211 99.43 True fake: not a misassembly (possible transposable element) 15988144 15989354 220982 219772 CM091751.1 scf7180000184211 100.0 True fake: not a misassembly (possible transposable element) 18270079 18347449 220983 298301 CM091753.1 scf7180000184211 99.21 True indel: indel (> 5bp) 18347458 18364170 298320 315054 CM091753.1 scf7180000184211 99.66 True indel: indel (> 5bp) 18364291 18367605 315196 318513 CM091753.1 scf7180000184211 99.55 True indel: indel (> 5bp) 18367641 18507105 318559 456591 CM091753.1 scf7180000184211 98.4 True fake: scaffold gap size wrong estimation (local) 18514690 18516049 457428 458787 CM091753.1 scf7180000184211 99.93 True fake: scaffold gap size wrong estimation (local) 18518092 18518650 460865 461423 CM091753.1 scf7180000184211 99.64 True CONTIG scf7180000184211 461423 misassembled 1310704 1312185 1493 10 CM091755.1 scf7180000184212 99.79 True fake: scaffold gap size wrong estimation (local) 1304582 1308341 7285 3653 CM091755.1 scf7180000184212 95.97 True fake: scaffold gap size wrong estimation (local) 1299987 1303840 12090 8230 CM091755.1 scf7180000184212 99.77 True fake: scaffold gap size wrong estimation (local) 1262494 1298952 49380 12979 CM091755.1 scf7180000184212 99.71 True fake: scaffold gap size wrong estimation (local) 1259024 1260170 52077 50931 CM091755.1 scf7180000184212 99.83 True indel: indel (<= 5bp) 1257454 1259022 53646 52078 CM091755.1 scf7180000184212 95.6 True fake: scaffold gap size wrong estimation (local) 1256239 1257453 54895 53681 CM091755.1 scf7180000184212 99.92 True fake: scaffold gap size wrong estimation (local) 1233570 1254741 77473 56260 CM091755.1 scf7180000184212 98.56 True fake: scaffold gap size wrong estimation (local) 1231187 1232894 79513 77816 CM091755.1 scf7180000184212 97.99 True fake: scaffold gap size wrong estimation (local) 1213341 1231018 97178 79640 CM091755.1 scf7180000184212 99.02 True fake: scaffold gap size wrong estimation (local) 1200240 1212831 110128 97548 CM091755.1 scf7180000184212 99.82 True fake: scaffold gap size wrong estimation (local) 1184396 1199338 125509 110566 CM091755.1 scf7180000184212 99.92 True fake: scaffold gap size wrong estimation (local) 1176723 1184073 132969 125603 CM091755.1 scf7180000184212 99.76 True local misassembly 1167942 1174764 140414 133586 CM091755.1 scf7180000184212 99.81 True fake: scaffold gap size wrong estimation (local) 1141723 1167696 166459 140534 CM091755.1 scf7180000184212 99.75 True fake: scaffold gap size wrong estimation (local) 1138761 1141763 169986 166983 CM091755.1 scf7180000184212 99.83 True fake: scaffold gap size wrong estimation (local) 1126570 1138385 182265 170425 CM091755.1 scf7180000184212 99.92 True fake: not a misassembly (possible transposable element) 20223053 20224172 182286 183408 CM091751.1 scf7180000184212 98.96 True fake: not a misassembly (possible transposable element) 1119801 1126628 190202 183409 CM091755.1 scf7180000184212 99.02 True fake: scaffold gap size wrong estimation (local) 1115317 1115843 195067 194541 CM091755.1 scf7180000184212 100.0 True fake: scaffold gap size wrong estimation (local) 1113737 1114564 196513 195686 CM091755.1 scf7180000184212 100.0 True fake: scaffold gap size wrong estimation (local) 1112624 1113535 197635 196724 CM091755.1 scf7180000184212 99.89 True fake: scaffold gap size wrong estimation (local) 1080689 1111173 228584 198520 CM091755.1 scf7180000184212 98.51 True fake: scaffold gap size wrong estimation (local) 1068044 1080460 240861 228763 CM091755.1 scf7180000184212 97.0 True fake: scaffold gap size wrong estimation (local) 1066262 1067523 242303 241041 CM091755.1 scf7180000184212 99.92 True fake: scaffold gap size wrong estimation (local) 1051297 1064811 256582 243279 CM091755.1 scf7180000184212 98.09 True fake: scaffold gap size wrong estimation (local) 1046623 1050716 260942 256849 CM091755.1 scf7180000184212 99.51 True local misassembly 1045420 1046436 261959 260943 CM091755.1 scf7180000184212 99.8 True indel: indel (<= 5bp) 1041655 1045418 265723 261960 CM091755.1 scf7180000184212 99.18 True fake: scaffold gap size wrong estimation (local) 979496 1040488 327262 266678 CM091755.1 scf7180000184212 99.24 True fake: scaffold gap size wrong estimation (local) 971052 979250 335561 327370 CM091755.1 scf7180000184212 99.79 True fake: scaffold gap size wrong estimation (local) 970304 970810 336783 336277 CM091755.1 scf7180000184212 95.66 True local misassembly 969078 969997 337703 336784 CM091755.1 scf7180000184212 100.0 True indel: indel (<= 5bp) 965041 969077 341741 337705 CM091755.1 scf7180000184212 100.0 True fake: scaffold gap size wrong estimation (local) 964243 964799 342663 342107 CM091755.1 scf7180000184212 96.41 True fake: scaffold gap size wrong estimation (local) 953243 961407 352189 344189 CM091755.1 scf7180000184212 97.97 True fake: scaffold gap size wrong estimation (local) 934821 951706 369681 352987 CM091755.1 scf7180000184212 98.78 True fake: scaffold gap size wrong estimation (local) 932257 934215 371833 369779 CM091755.1 scf7180000184212 96.07 True fake: scaffold gap size wrong estimation (local) 926022 931873 377855 372008 CM091755.1 scf7180000184212 99.91 True fake: scaffold gap size wrong estimation (local) 923846 925887 380271 378228 CM091755.1 scf7180000184212 99.9 True fake: scaffold gap size wrong estimation (local) 920563 923767 383647 380368 CM091755.1 scf7180000184212 97.73 True fake: scaffold gap size wrong estimation (local) 917401 919233 387619 385787 CM091755.1 scf7180000184212 100.0 True indel: indel (<= 5bp) 916334 917400 388687 387621 CM091755.1 scf7180000184212 100.0 True fake: scaffold gap size wrong estimation (local) 914125 916333 390918 388710 CM091755.1 scf7180000184212 96.88 True indel: indel (> 5bp) 913310 914116 391725 390919 CM091755.1 scf7180000184212 99.63 True CONTIG scf7180000184212 391899 correct 15394778 15431212 37512 1324 CM091758.1 scf7180000184213 99.1 True fake: scaffold gap size wrong estimation (local) 15378025 15394614 53510 37664 CM091758.1 scf7180000184213 95.29 True fake: scaffold gap size wrong estimation (local) 15375977 15377682 55307 53602 CM091758.1 scf7180000184213 99.65 True indel: indel (<= 5bp) 15375298 15375972 55982 55308 CM091758.1 scf7180000184213 99.7 True local misassembly 15373384 15375057 57656 55983 CM091758.1 scf7180000184213 99.52 True indel: indel (<= 5bp) 15359380 15373278 71200 57767 CM091758.1 scf7180000184213 96.12 True fake: scaffold gap size wrong estimation (local) 15357404 15358714 73590 72280 CM091758.1 scf7180000184213 99.69 True indel: indel (<= 5bp) 15356852 15357403 74143 73592 CM091758.1 scf7180000184213 100.0 True indel: indel (<= 5bp) 15355832 15356354 75166 74644 CM091758.1 scf7180000184213 99.04 True indel: indel (<= 5bp) 15355051 15355831 75950 75170 CM091758.1 scf7180000184213 99.36 True indel: indel (<= 5bp) 15354522 15355049 76478 75951 CM091758.1 scf7180000184213 99.43 True indel: indel (<= 5bp) 15353252 15354437 77750 76565 CM091758.1 scf7180000184213 99.66 True fake: scaffold gap size wrong estimation (local) 15324686 15351953 105103 78899 CM091758.1 scf7180000184213 95.12 True fake: scaffold gap size wrong estimation (local) 15296288 15324202 132512 105411 CM091758.1 scf7180000184213 96.32 True fake: scaffold gap size wrong estimation (local) 15290789 15295556 137509 132743 CM091758.1 scf7180000184213 99.6 True fake: scaffold gap size wrong estimation (local) 15289893 15290663 138385 137615 CM091758.1 scf7180000184213 99.22 True local misassembly 15288301 15289295 139974 138980 CM091758.1 scf7180000184213 100.0 True indel: indel (> 5bp) 15287328 15287979 140911 140260 CM091758.1 scf7180000184213 99.54 True fake: scaffold gap size wrong estimation (local) 15284846 15285510 143057 142393 CM091758.1 scf7180000184213 98.5 True fake: scaffold gap size wrong estimation (local) 15283698 15284248 144351 143801 CM091758.1 scf7180000184213 99.82 True fake: scaffold gap size wrong estimation (local) 15281754 15283083 145921 144592 CM091758.1 scf7180000184213 98.05 True local misassembly 15280990 15281583 146515 145922 CM091758.1 scf7180000184213 99.16 True indel: indel (> 5bp) 15280402 15280958 147072 146516 CM091758.1 scf7180000184213 99.46 True indel: indel (<= 5bp) 15278009 15280401 149467 147075 CM091758.1 scf7180000184213 99.75 True indel: indel (<= 5bp) 15277465 15278007 150010 149468 CM091758.1 scf7180000184213 99.45 True indel: indel (<= 5bp) 15276400 15277462 151073 150011 CM091758.1 scf7180000184213 97.74 True local misassembly 15274889 15275589 152098 151398 CM091758.1 scf7180000184213 100.0 True fake: scaffold gap size wrong estimation (local) 15272661 15275426 155002 152215 CM091758.1 scf7180000184213 99.31 True fake: scaffold gap size wrong estimation (local) 15267943 15272494 159686 155175 CM091758.1 scf7180000184213 97.65 True fake: scaffold gap size wrong estimation (local) 15223698 15267829 203995 159833 CM091758.1 scf7180000184213 99.52 True indel: indel (<= 5bp) 15218190 15223670 209522 204019 CM091758.1 scf7180000184213 99.71 True fake: scaffold gap size wrong estimation (local) 15210929 15217997 216482 209674 CM091758.1 scf7180000184213 95.73 True fake: scaffold gap size wrong estimation (local) 15209014 15209846 218499 217667 CM091758.1 scf7180000184213 96.76 True fake: scaffold gap size wrong estimation (local) 15206533 15207361 220136 219308 CM091758.1 scf7180000184213 99.4 True indel: indel (<= 5bp) 15205847 15206532 220823 220138 CM091758.1 scf7180000184213 97.08 True local misassembly 15203673 15205632 222899 220940 CM091758.1 scf7180000184213 98.83 True local misassembly 15202390 15203154 223664 222900 CM091758.1 scf7180000184213 98.95 True indel: indel (> 5bp) 15199904 15202188 226136 223852 CM091758.1 scf7180000184213 99.91 True indel: indel (> 5bp) 15199391 15199903 226668 226156 CM091758.1 scf7180000184213 99.61 True indel: indel (<= 5bp) 15198635 15199385 227419 226669 CM091758.1 scf7180000184213 99.33 True indel: indel (<= 5bp) 15197943 15198457 228109 227595 CM091758.1 scf7180000184213 99.22 True local misassembly 15196400 15196975 229324 228749 CM091758.1 scf7180000184213 98.09 True indel: stretch of mismatches 15195030 15196338 230694 229386 CM091758.1 scf7180000184213 98.4 True indel: indel (> 5bp) 15194193 15194852 231541 230882 CM091758.1 scf7180000184213 99.7 True fake: scaffold gap size wrong estimation (local) 15188828 15194029 236886 231666 CM091758.1 scf7180000184213 99.67 True fake: scaffold gap size wrong estimation (local) 15183199 15188311 242102 237070 CM091758.1 scf7180000184213 97.08 True fake: scaffold gap size wrong estimation (local) 15172538 15181660 253251 244139 CM091758.1 scf7180000184213 98.87 True fake: scaffold gap size wrong estimation (local) 15169222 15169820 255835 255237 CM091758.1 scf7180000184213 99.33 True indel: indel (<= 5bp) 15167539 15169219 257516 255836 CM091758.1 scf7180000184213 99.64 True indel: stretch of mismatches 15166844 15167498 258211 257557 CM091758.1 scf7180000184213 99.39 True fake: scaffold gap size wrong estimation (local) 15165209 15165785 259569 258993 CM091758.1 scf7180000184213 99.65 True indel: indel (> 5bp) 15163956 15165202 260816 259570 CM091758.1 scf7180000184213 99.44 True indel: indel (> 5bp) 15162695 15163955 262085 260825 CM091758.1 scf7180000184213 99.52 True local misassembly 15158173 15160788 264701 262086 CM091758.1 scf7180000184213 99.54 True fake: scaffold gap size wrong estimation (local) 15154392 15157575 268289 265100 CM091758.1 scf7180000184213 98.81 True fake: scaffold gap size wrong estimation (local) 15147797 15153585 274588 268902 CM091758.1 scf7180000184213 96.95 True translocation 17899995 17993986 368128 274701 CM091753.1 scf7180000184213 98.76 True indel: indel (<= 5bp) 17785939 17899993 479163 368129 CM091753.1 scf7180000184213 95.71 True fake: scaffold gap size wrong estimation (local) 17784056 17785345 480972 479683 CM091753.1 scf7180000184213 99.77 True indel: indel (<= 5bp) 17782662 17783556 482365 481471 CM091753.1 scf7180000184213 99.66 True local misassembly 17779814 17781576 485219 483457 CM091753.1 scf7180000184213 99.55 True indel: indel (<= 5bp) 17779265 17779813 485769 485221 CM091753.1 scf7180000184213 99.82 True indel: indel (<= 5bp) 17778073 17779261 486958 485770 CM091753.1 scf7180000184213 99.75 True indel: indel (<= 5bp) 17776097 17777746 488932 487283 CM091753.1 scf7180000184213 99.64 True local misassembly 17774618 17775163 490419 489874 CM091753.1 scf7180000184213 99.63 True local misassembly 17773939 17774520 491001 490420 CM091753.1 scf7180000184213 99.66 True indel: indel (<= 5bp) 17770640 17773937 494299 491002 CM091753.1 scf7180000184213 99.91 True indel: indel (<= 5bp) 17769766 17770639 495175 494302 CM091753.1 scf7180000184213 99.89 True indel: indel (> 5bp) 17767921 17769386 497029 495564 CM091753.1 scf7180000184213 99.93 True indel: indel (<= 5bp) 17766960 17767920 497991 497031 CM091753.1 scf7180000184213 99.79 True indel: indel (> 5bp) 17766347 17766950 498618 498015 CM091753.1 scf7180000184213 99.83 True indel: stretch of mismatches 17765216 17766132 499749 498833 CM091753.1 scf7180000184213 100.0 True indel: indel (<= 5bp) 17763895 17765214 501069 499750 CM091753.1 scf7180000184213 99.55 True local misassembly 17761634 17762294 501730 501070 CM091753.1 scf7180000184213 99.85 True local misassembly 17758738 17761233 504226 501731 CM091753.1 scf7180000184213 99.84 True fake: scaffold gap size wrong estimation (local) 17754840 17758162 507935 504620 CM091753.1 scf7180000184213 99.15 True fake: scaffold gap size wrong estimation (local) 17666488 17754704 596286 508039 CM091753.1 scf7180000184213 99.37 True fake: scaffold gap size wrong estimation (local) 17635205 17666017 627290 596743 CM091753.1 scf7180000184213 98.55 True CONTIG scf7180000184213 627290 misassembled 7911832 7914871 3041 1 CM091755.1 scf7180000184214 99.64 True translocation 14531571 14534259 5617 3042 CM091751.1 scf7180000184214 95.46 True fake: scaffold gap size wrong estimation (local) 14504217 14531574 32056 5681 CM091751.1 scf7180000184214 95.66 True fake: scaffold gap size wrong estimation (local) 14500947 14503467 34807 32286 CM091751.1 scf7180000184214 99.84 True fake: scaffold gap size wrong estimation (local) 14490559 14500350 44949 35331 CM091751.1 scf7180000184214 97.04 True fake: scaffold gap size wrong estimation (local) 14485867 14488666 49404 46599 CM091751.1 scf7180000184214 99.43 True local misassembly 14455516 14484720 79464 50421 CM091751.1 scf7180000184214 98.29 True fake: scaffold gap size wrong estimation (local) 14451649 14454817 83512 80337 CM091751.1 scf7180000184214 99.28 True fake: scaffold gap size wrong estimation (local) 14447510 14451043 87510 83961 CM091751.1 scf7180000184214 98.76 True fake: scaffold gap size wrong estimation (local) 14432936 14446599 102017 88292 CM091751.1 scf7180000184214 99.45 True local misassembly 14349118 14432246 185057 102031 CM091751.1 scf7180000184214 99.13 True indel: indel (> 5bp) 14222609 14348959 310189 185229 CM091751.1 scf7180000184214 97.81 True indel: indel (> 5bp) 14168519 14222160 364316 310660 CM091751.1 scf7180000184214 99.77 True fake: scaffold gap size wrong estimation (local) 14004489 14167643 527788 364964 CM091751.1 scf7180000184214 99.3 True local misassembly 13848258 14004420 682984 528000 CM091751.1 scf7180000184214 98.66 True local misassembly 13690509 13848042 840175 683459 CM091751.1 scf7180000184214 98.57 True fake: scaffold gap size wrong estimation (local) 13688927 13689935 841389 840381 CM091751.1 scf7180000184214 99.21 True indel: indel (<= 5bp) 13688109 13688926 842208 841391 CM091751.1 scf7180000184214 99.14 True indel: indel (> 5bp) 13614015 13687877 916001 842371 CM091751.1 scf7180000184214 98.59 True fake: scaffold gap size wrong estimation (local) 13567359 13612816 962104 916711 CM091751.1 scf7180000184214 99.77 True indel: indel (> 5bp) 13407974 13567320 1121384 962149 CM091751.1 scf7180000184214 99.49 True indel: stretch of mismatches 13362843 13407916 1166440 1121442 CM091751.1 scf7180000184214 98.66 True fake: scaffold gap size wrong estimation (local) 13300462 13361920 1228722 1166911 CM091751.1 scf7180000184214 98.69 True fake: scaffold gap size wrong estimation (local) 13275683 13300200 1253580 1228881 CM091751.1 scf7180000184214 96.29 True fake: scaffold gap size wrong estimation (local) 13273324 13273831 1255928 1255421 CM091751.1 scf7180000184214 99.41 True fake: scaffold gap size wrong estimation (local) 13272508 13273265 1256784 1256027 CM091751.1 scf7180000184214 99.74 True indel: indel (> 5bp) 13270788 13272192 1258510 1257106 CM091751.1 scf7180000184214 99.36 True fake: scaffold gap size wrong estimation (local) 13270248 13270749 1259256 1258755 CM091751.1 scf7180000184214 99.6 True indel: indel (<= 5bp) 13269226 13270245 1260276 1259257 CM091751.1 scf7180000184214 99.41 True local misassembly 13268014 13268724 1261490 1260780 CM091751.1 scf7180000184214 99.3 True indel: indel (<= 5bp) 13265814 13267986 1263692 1261520 CM091751.1 scf7180000184214 99.45 True relocation, scaffold gap is present, inconsistency = 51102 13200665 13212629 1277737 1265775 CM091751.1 scf7180000184214 99.27 True fake: scaffold gap size wrong estimation (local) 13189811 13199807 1288213 1278219 CM091751.1 scf7180000184214 99.48 True CONTIG scf7180000184214 1288299 misassembled 3895433 3906413 11035 19 CM091762.1 scf7180000184215 99.18 True indel: indel (<= 5bp) 3844397 3895393 62221 11078 CM091762.1 scf7180000184215 99.13 True fake: scaffold gap size wrong estimation (local) 3797298 3843927 109084 62457 CM091762.1 scf7180000184215 99.11 True fake: scaffold gap size wrong estimation (local) 3676228 3797099 229977 109215 CM091762.1 scf7180000184215 99.28 True fake: scaffold gap size wrong estimation (local) 3648544 3675992 257349 230251 CM091762.1 scf7180000184215 98.34 True fake: scaffold gap size wrong estimation (local) 3603456 3647721 302494 258249 CM091762.1 scf7180000184215 99.83 True fake: scaffold gap size wrong estimation (local) 3602139 3603337 303781 302583 CM091762.1 scf7180000184215 99.92 True indel: indel (<= 5bp) 3599845 3602138 306076 303783 CM091762.1 scf7180000184215 99.83 True indel: indel (> 5bp) 3597399 3599581 308529 306347 CM091762.1 scf7180000184215 98.67 True local misassembly 3591982 3594562 311110 308530 CM091762.1 scf7180000184215 99.23 True fake: scaffold gap size wrong estimation (local) 3589736 3591981 313707 311462 CM091762.1 scf7180000184215 99.78 True indel: indel (<= 5bp) 3588404 3589574 315036 313866 CM091762.1 scf7180000184215 99.4 True indel: indel (<= 5bp) 3587706 3588403 315737 315040 CM091762.1 scf7180000184215 99.86 True indel: indel (<= 5bp) 3587186 3587702 316254 315738 CM091762.1 scf7180000184215 99.61 True indel: indel (<= 5bp) 3586593 3587185 316848 316256 CM091762.1 scf7180000184215 99.83 True fake: scaffold gap size wrong estimation (local) 3585202 3586218 318252 317236 CM091762.1 scf7180000184215 99.9 True indel: indel (<= 5bp) 3583955 3584759 319503 318699 CM091762.1 scf7180000184215 99.5 True indel: indel (> 5bp) 3573720 3583536 329722 319906 CM091762.1 scf7180000184215 99.74 True indel: indel (<= 5bp) 3571539 3573255 331906 330190 CM091762.1 scf7180000184215 99.65 True indel: indel (> 5bp) 3568887 3571284 334566 332169 CM091762.1 scf7180000184215 99.79 True indel: indel (> 5bp) 3566770 3568886 336714 334598 CM091762.1 scf7180000184215 99.72 True indel: indel (<= 5bp) 3564202 3566769 339283 336716 CM091762.1 scf7180000184215 99.84 True indel: indel (> 5bp) 3563448 3564201 340074 339321 CM091762.1 scf7180000184215 99.73 True indel: indel (<= 5bp) 3562442 3563004 341083 340521 CM091762.1 scf7180000184215 98.93 True indel: indel (<= 5bp) 3559798 3562282 343731 341247 CM091762.1 scf7180000184215 99.6 True indel: indel (<= 5bp) 3555455 3559797 348079 343737 CM091762.1 scf7180000184215 99.56 True indel: indel (> 5bp) 3546995 3555446 356531 348080 CM091762.1 scf7180000184215 99.55 True indel: indel (<= 5bp) 3544423 3546991 359100 356532 CM091762.1 scf7180000184215 99.88 True indel: indel (<= 5bp) 3537158 3544421 366364 359101 CM091762.1 scf7180000184215 99.79 True fake: scaffold gap size wrong estimation (local) 3514818 3535588 388303 367466 CM091762.1 scf7180000184215 98.91 True fake: scaffold gap size wrong estimation (local) 3483495 3514617 419100 388468 CM091762.1 scf7180000184215 97.64 True fake: scaffold gap size wrong estimation (local) 3468294 3483517 434747 419606 CM091762.1 scf7180000184215 98.7 True fake: scaffold gap size wrong estimation (local) 3328723 3467479 573957 435242 CM091762.1 scf7180000184215 99.18 True fake: scaffold gap size wrong estimation (local) 3319757 3328300 582579 574056 CM091762.1 scf7180000184215 99.17 True fake: scaffold gap size wrong estimation (local) 3301350 3319509 600891 582778 CM091762.1 scf7180000184215 97.67 True fake: scaffold gap size wrong estimation (local) 3300040 3300993 601999 601046 CM091762.1 scf7180000184215 98.64 True fake: scaffold gap size wrong estimation (local) 3222070 3299079 679447 602686 CM091762.1 scf7180000184215 97.98 True fake: scaffold gap size wrong estimation (local) 3122627 3221941 778517 679570 CM091762.1 scf7180000184215 98.98 True fake: not a misassembly (possible transposable element) 15942107 15943539 778538 779971 CM091758.1 scf7180000184215 99.55 True fake: not a misassembly (possible transposable element) 3102170 3122418 800253 779972 CM091762.1 scf7180000184215 99.27 True CONTIG scf7180000184215 800258 correct 4403987 4405163 1189 24 CM091768.1 scf7180000184216 98.05 True relocation, scaffold gap is present, inconsistency = -124841 4525349 4528520 4660 1497 CM091768.1 scf7180000184216 98.6 True translocation 14993359 15009306 20569 4661 CM091758.1 scf7180000184216 99.35 True fake: scaffold gap size wrong estimation (local) 14992351 14992972 21364 20743 CM091758.1 scf7180000184216 99.2 True indel: stretch of mismatches 14991521 14992127 22194 21588 CM091758.1 scf7180000184216 99.51 True indel: indel (<= 5bp) 14990329 14991520 23387 22196 CM091758.1 scf7180000184216 100.0 True indel: indel (<= 5bp) 14989744 14990299 23974 23419 CM091758.1 scf7180000184216 96.4 True local misassembly 14988707 14989371 24717 24053 CM091758.1 scf7180000184216 99.7 True indel: indel (<= 5bp) 14987453 14988706 25972 24719 CM091758.1 scf7180000184216 99.68 True indel: indel (> 5bp) 14986822 14987452 26633 26003 CM091758.1 scf7180000184216 98.89 True indel: indel (<= 5bp) 14986061 14986821 27398 26638 CM091758.1 scf7180000184216 99.74 True fake: scaffold gap size wrong estimation (local) 14979483 14985686 33733 27512 CM091758.1 scf7180000184216 98.71 True fake: scaffold gap size wrong estimation (local) 14978748 14979323 34450 33875 CM091758.1 scf7180000184216 98.61 True indel: indel (> 5bp) 14977686 14978735 35519 34470 CM091758.1 scf7180000184216 99.81 True indel: indel (<= 5bp) 14976655 14977685 36551 35521 CM091758.1 scf7180000184216 99.52 True indel: indel (> 5bp) 14974781 14976654 38431 36558 CM091758.1 scf7180000184216 98.61 True indel: indel (<= 5bp) 14974192 14974747 39018 38463 CM091758.1 scf7180000184216 99.46 True local misassembly 14971910 14973237 40935 39608 CM091758.1 scf7180000184216 99.4 True fake: scaffold gap size wrong estimation (local) 14968371 14970806 44361 41926 CM091758.1 scf7180000184216 98.23 True local misassembly 14967328 14968047 45081 44362 CM091758.1 scf7180000184216 99.58 True indel: indel (<= 5bp) 14966755 14967327 45655 45083 CM091758.1 scf7180000184216 99.3 True indel: indel (<= 5bp) 14965399 14966740 47007 45666 CM091758.1 scf7180000184216 99.55 True fake: scaffold gap size wrong estimation (local) 14963817 14965079 48381 47119 CM091758.1 scf7180000184216 99.6 True fake: scaffold gap size wrong estimation (local) 14954267 14963596 57888 48570 CM091758.1 scf7180000184216 99.15 True fake: scaffold gap size wrong estimation (local) 14952423 14953080 59598 58941 CM091758.1 scf7180000184216 99.7 True indel: indel (<= 5bp) 14951595 14952421 60425 59599 CM091758.1 scf7180000184216 99.4 True local misassembly 14950080 14950726 61939 61293 CM091758.1 scf7180000184216 99.54 True indel: indel (<= 5bp) 14949341 14949843 62675 62173 CM091758.1 scf7180000184216 99.8 True local misassembly 14946946 14948317 65074 63703 CM091758.1 scf7180000184216 99.85 True local misassembly 14945907 14946441 66115 65581 CM091758.1 scf7180000184216 99.81 True indel: indel (<= 5bp) 14943904 14945656 68120 66368 CM091758.1 scf7180000184216 99.77 True indel: indel (<= 5bp) 14942587 14943903 69438 68122 CM091758.1 scf7180000184216 99.7 True indel: indel (<= 5bp) 14941971 14942586 70056 69441 CM091758.1 scf7180000184216 99.84 True indel: indel (> 5bp) 14941208 14941956 70831 70083 CM091758.1 scf7180000184216 99.73 True indel: indel (<= 5bp) 14939709 14941207 72332 70834 CM091758.1 scf7180000184216 99.67 True indel: indel (<= 5bp) 14939058 14939705 72980 72333 CM091758.1 scf7180000184216 100.0 True indel: indel (<= 5bp) 14938365 14939057 73674 72982 CM091758.1 scf7180000184216 99.42 True local misassembly 14935930 14937573 75442 73799 CM091758.1 scf7180000184216 99.82 True indel: stretch of mismatches 14934844 14935736 76528 75636 CM091758.1 scf7180000184216 99.78 True indel: indel (<= 5bp) 14933836 14934461 77539 76914 CM091758.1 scf7180000184216 99.84 True indel: indel (<= 5bp) 14933112 14933835 78268 77545 CM091758.1 scf7180000184216 100.0 True local misassembly 14931520 14932515 79811 78816 CM091758.1 scf7180000184216 100.0 True indel: indel (<= 5bp) 14929763 14931301 81570 80032 CM091758.1 scf7180000184216 95.32 True local misassembly 14928745 14929665 82491 81571 CM091758.1 scf7180000184216 100.0 True indel: indel (<= 5bp) 14927572 14928744 83665 82493 CM091758.1 scf7180000184216 98.12 True local misassembly 14926433 14927277 84510 83666 CM091758.1 scf7180000184216 99.29 True indel: indel (<= 5bp) 14925797 14926397 85144 84544 CM091758.1 scf7180000184216 99.5 True indel: indel (<= 5bp) 14924258 14925796 86684 85146 CM091758.1 scf7180000184216 99.87 True indel: indel (<= 5bp) 14923241 14923965 87703 86979 CM091758.1 scf7180000184216 100.0 True indel: indel (<= 5bp) 14915722 14923240 95223 87705 CM091758.1 scf7180000184216 99.84 True indel: indel (<= 5bp) 14914406 14915719 96537 95224 CM091758.1 scf7180000184216 98.55 True fake: scaffold gap size wrong estimation (local) 14913273 14913994 99087 98366 CM091758.1 scf7180000184216 98.89 True indel: indel (<= 5bp) 14912610 14913272 99751 99089 CM091758.1 scf7180000184216 99.85 True indel: indel (<= 5bp) 14912039 14912609 100323 99753 CM091758.1 scf7180000184216 99.3 True local misassembly 14910178 14910930 101357 100605 CM091758.1 scf7180000184216 99.73 True local misassembly 14907769 14909217 103760 102312 CM091758.1 scf7180000184216 99.59 True fake: scaffold gap size wrong estimation (local) 14906302 14907289 104937 103950 CM091758.1 scf7180000184216 99.09 True indel: indel (<= 5bp) 14905261 14906298 105975 104938 CM091758.1 scf7180000184216 100.0 True indel: indel (<= 5bp) 14904494 14905254 106745 105985 CM091758.1 scf7180000184216 99.87 True indel: indel (<= 5bp) 14902980 14904492 108258 106746 CM091758.1 scf7180000184216 99.93 True local misassembly 14899578 14901490 110825 108913 CM091758.1 scf7180000184216 99.69 True indel: indel (<= 5bp) 14898858 14899577 111547 110828 CM091758.1 scf7180000184216 99.86 True fake: scaffold gap size wrong estimation (local) 14897475 14898002 112572 112045 CM091758.1 scf7180000184216 99.05 True indel: indel (<= 5bp) 14896105 14897086 113945 112964 CM091758.1 scf7180000184216 99.69 True indel: indel (<= 5bp) 14895154 14896103 114895 113946 CM091758.1 scf7180000184216 99.68 True fake: scaffold gap size wrong estimation (local) 14893792 14894444 116240 115588 CM091758.1 scf7180000184216 99.08 True fake: scaffold gap size wrong estimation (local) 14891993 14892947 118223 117269 CM091758.1 scf7180000184216 99.79 True local misassembly 14888969 14889672 121265 120562 CM091758.1 scf7180000184216 99.86 True indel: indel (<= 5bp) 14888356 14888967 121877 121266 CM091758.1 scf7180000184216 99.84 True indel: indel (<= 5bp) 14887720 14888355 122514 121879 CM091758.1 scf7180000184216 100.0 True indel: indel (<= 5bp) 14886317 14887380 123919 122856 CM091758.1 scf7180000184216 99.72 True indel: indel (<= 5bp) 14885813 14886315 124422 123920 CM091758.1 scf7180000184216 99.2 True indel: indel (<= 5bp) 14884242 14885745 125996 124493 CM091758.1 scf7180000184216 99.53 True fake: scaffold gap size wrong estimation (local) 14855649 14881625 154343 128343 CM091758.1 scf7180000184216 99.39 True fake: scaffold gap size wrong estimation (local) 14851206 14855307 158551 154438 CM091758.1 scf7180000184216 98.98 True indel: indel (> 5bp) 14850055 14850926 159722 158851 CM091758.1 scf7180000184216 99.43 True indel: indel (<= 5bp) 14849020 14850053 160756 159723 CM091758.1 scf7180000184216 99.42 True indel: indel (<= 5bp) 14848291 14848994 161487 160784 CM091758.1 scf7180000184216 99.57 True local misassembly 14844991 14846205 163729 162515 CM091758.1 scf7180000184216 99.67 True indel: indel (<= 5bp) 14844150 14844824 164573 163899 CM091758.1 scf7180000184216 100.0 True fake: scaffold gap size wrong estimation (local) 14839752 14843655 168925 164993 CM091758.1 scf7180000184216 98.5 True fake: scaffold gap size wrong estimation (local) 14838298 14838814 170421 169905 CM091758.1 scf7180000184216 96.91 True local misassembly 14836379 14837151 172307 171535 CM091758.1 scf7180000184216 99.35 True indel: indel (> 5bp) 14835494 14836370 173184 172308 CM091758.1 scf7180000184216 99.77 True local misassembly 14833517 14834317 173985 173185 CM091758.1 scf7180000184216 99.25 True indel: indel (<= 5bp) 14832113 14833040 175391 174464 CM091758.1 scf7180000184216 99.35 True local misassembly 14830741 14832062 177129 175808 CM091758.1 scf7180000184216 99.32 True indel: indel (> 5bp) 14829129 14830733 178734 177130 CM091758.1 scf7180000184216 99.5 True indel: indel (<= 5bp) 14828481 14829125 179379 178735 CM091758.1 scf7180000184216 99.22 True fake: scaffold gap size wrong estimation (local) 14803626 14827654 204119 180036 CM091758.1 scf7180000184216 98.99 True fake: scaffold gap size wrong estimation (local) 14767702 14802171 239294 204920 CM091758.1 scf7180000184216 98.81 True local misassembly 14764426 14767387 242426 239450 CM091758.1 scf7180000184216 98.73 True fake: scaffold gap size wrong estimation (local) 14762031 14762788 244549 243792 CM091758.1 scf7180000184216 98.28 True local misassembly 14761064 14761763 245249 244550 CM091758.1 scf7180000184216 99.71 True fake: scaffold gap size wrong estimation (local) 14759281 14760307 248153 247124 CM091758.1 scf7180000184216 98.64 True translocation, scaffold gap is present 14936470 14938431 250135 248174 CM091755.1 scf7180000184216 99.24 True fake: scaffold gap size wrong estimation (local) 14928687 14936211 257789 250265 CM091755.1 scf7180000184216 98.49 True fake: scaffold gap size wrong estimation (local) 14924711 14928476 261809 257992 CM091755.1 scf7180000184216 97.77 True fake: scaffold gap size wrong estimation (local) 14909385 14923991 276845 262513 CM091755.1 scf7180000184216 96.79 True indel: indel (<= 5bp) 14837797 14909281 348061 276947 CM091755.1 scf7180000184216 98.86 True fake: scaffold gap size wrong estimation (local) 14831275 14837024 353911 348156 CM091755.1 scf7180000184216 99.64 True fake: scaffold gap size wrong estimation (local) 14821031 14830449 363756 354414 CM091755.1 scf7180000184216 98.99 True indel: indel (> 5bp) 14784696 14820818 399624 363982 CM091755.1 scf7180000184216 97.53 True fake: scaffold gap size wrong estimation (local) 14706497 14784249 477140 399950 CM091755.1 scf7180000184216 98.72 True fake: scaffold gap size wrong estimation (local) 14704442 14705251 478375 477563 CM091755.1 scf7180000184216 98.03 True fake: scaffold gap size wrong estimation (local) 14665484 14703470 516360 478746 CM091755.1 scf7180000184216 98.02 True fake: scaffold gap size wrong estimation (local) 14658843 14664752 522408 516492 CM091755.1 scf7180000184216 99.36 True fake: scaffold gap size wrong estimation (local) 14629032 14658323 551892 522770 CM091755.1 scf7180000184216 98.51 True fake: scaffold gap size wrong estimation (local) 14495752 14628747 684913 552027 CM091755.1 scf7180000184216 99.58 True fake: scaffold gap size wrong estimation (local) 14438011 14495566 742564 685093 CM091755.1 scf7180000184216 99.31 True indel: indel (> 5bp) 14389510 14437719 791097 742875 CM091755.1 scf7180000184216 99.87 True fake: scaffold gap size wrong estimation (local) 14310273 14389265 869832 791148 CM091755.1 scf7180000184216 99.24 True indel: indel (<= 5bp) 14296405 14310105 883499 869998 CM091755.1 scf7180000184216 97.25 True fake: scaffold gap size wrong estimation (local) 14292830 14295969 886803 883758 CM091755.1 scf7180000184216 96.03 True fake: scaffold gap size wrong estimation (local) 14291340 14292369 888095 887066 CM091755.1 scf7180000184216 99.81 True indel: indel (<= 5bp) 14290826 14291339 888610 888097 CM091755.1 scf7180000184216 99.22 True indel: indel (<= 5bp) 14290197 14290825 889240 888612 CM091755.1 scf7180000184216 100.0 True fake: scaffold gap size wrong estimation (local) 14264522 14288694 914703 890621 CM091755.1 scf7180000184216 98.97 True fake: scaffold gap size wrong estimation (local) 14247127 14263694 931358 915287 CM091755.1 scf7180000184216 96.3 True fake: scaffold gap size wrong estimation (local) 14246462 14246973 932072 931561 CM091755.1 scf7180000184216 99.41 True fake: scaffold gap size wrong estimation (local) 14244548 14245492 933816 932867 CM091755.1 scf7180000184216 95.2 True CONTIG scf7180000184216 933819 misassembled 18921542 18922983 1 1451 CM091751.1 scf7180000184217 98.55 True local misassembly 18923321 18924880 1698 3257 CM091751.1 scf7180000184217 99.55 True fake: scaffold gap size wrong estimation (local) 18925497 18926001 3715 4219 CM091751.1 scf7180000184217 99.6 True fake: scaffold gap size wrong estimation (local) 18927631 18931428 5552 9315 CM091751.1 scf7180000184217 98.15 True fake: scaffold gap size wrong estimation (local) 18932257 18932789 9939 10471 CM091751.1 scf7180000184217 100.0 True fake: scaffold gap size wrong estimation (local) 18932790 18933488 10650 11348 CM091751.1 scf7180000184217 99.57 True fake: scaffold gap size wrong estimation (local) 18935582 18937442 13066 14926 CM091751.1 scf7180000184217 99.36 True fake: scaffold gap size wrong estimation (local) 18941849 18945783 19027 22951 CM091751.1 scf7180000184217 98.12 True fake: scaffold gap size wrong estimation (local) 18946197 18948733 23115 25665 CM091751.1 scf7180000184217 98.51 True fake: scaffold gap size wrong estimation (local) 18949701 18954036 25797 30114 CM091751.1 scf7180000184217 98.23 True fake: scaffold gap size wrong estimation (local) 18954185 18955364 30195 31406 CM091751.1 scf7180000184217 97.24 True fake: scaffold gap size wrong estimation (local) 18955584 18956975 31593 33003 CM091751.1 scf7180000184217 97.1 True fake: scaffold gap size wrong estimation (local) 18957589 18960315 33177 35876 CM091751.1 scf7180000184217 97.73 True fake: scaffold gap size wrong estimation (local) 18964878 18965508 36112 36742 CM091751.1 scf7180000184217 99.37 True indel: indel (<= 5bp) 18965849 18966484 37088 37723 CM091751.1 scf7180000184217 98.74 True fake: scaffold gap size wrong estimation (local) 18966922 18967966 38184 39231 CM091751.1 scf7180000184217 98.47 True fake: scaffold gap size wrong estimation (local) 18968605 18969676 39884 40945 CM091751.1 scf7180000184217 97.72 True fake: scaffold gap size wrong estimation (local) 18969767 18970314 41020 41569 CM091751.1 scf7180000184217 98.36 True fake: scaffold gap size wrong estimation (local) 18970763 18972797 42113 44156 CM091751.1 scf7180000184217 98.53 True fake: scaffold gap size wrong estimation (local) 18972908 18978893 44200 50189 CM091751.1 scf7180000184217 98.5 True fake: scaffold gap size wrong estimation (local) 18979350 18982128 50711 53524 CM091751.1 scf7180000184217 98.44 True fake: scaffold gap size wrong estimation (local) 18983443 18984292 54846 55695 CM091751.1 scf7180000184217 99.76 True fake: scaffold gap size wrong estimation (local) 18984651 18988956 56166 60491 CM091751.1 scf7180000184217 98.87 True fake: scaffold gap size wrong estimation (local) 18989215 18992797 60732 64337 CM091751.1 scf7180000184217 98.36 True fake: scaffold gap size wrong estimation (local) 18992989 18997345 64525 68806 CM091751.1 scf7180000184217 95.99 True fake: scaffold gap size wrong estimation (local) 18998182 18999758 69470 71046 CM091751.1 scf7180000184217 99.37 True fake: scaffold gap size wrong estimation (local) 19000455 19002928 71643 74140 CM091751.1 scf7180000184217 98.59 True fake: scaffold gap size wrong estimation (local) 19005664 19006896 75188 76420 CM091751.1 scf7180000184217 99.51 True indel: indel (> 5bp) 19007312 19007882 76846 77416 CM091751.1 scf7180000184217 100.0 True fake: not a misassembly (possible transposable element) 3189566 3191087 79189 80710 CM091752.1 scf7180000184217 99.93 True fake: not a misassembly (possible transposable element) 19010079 19012858 80765 83578 CM091751.1 scf7180000184217 98.86 True fake: scaffold gap size wrong estimation (local) 19013117 19015393 83764 86036 CM091751.1 scf7180000184217 98.64 True fake: scaffold gap size wrong estimation (local) 19016719 19017306 86928 87515 CM091751.1 scf7180000184217 98.13 True fake: scaffold gap size wrong estimation (local) 19019898 19020861 90825 91788 CM091751.1 scf7180000184217 99.69 True fake: scaffold gap size wrong estimation (local) 19021552 19023384 92500 94336 CM091751.1 scf7180000184217 98.84 True fake: scaffold gap size wrong estimation (local) 19023621 19025041 94485 95927 CM091751.1 scf7180000184217 97.51 True fake: scaffold gap size wrong estimation (local) 19026304 19029738 96356 99779 CM091751.1 scf7180000184217 97.23 True fake: scaffold gap size wrong estimation (local) 19032767 19034301 101967 103499 CM091751.1 scf7180000184217 98.72 True fake: scaffold gap size wrong estimation (local) 19036488 19038614 105149 107273 CM091751.1 scf7180000184217 99.25 True fake: scaffold gap size wrong estimation (local) 19041003 19042021 108830 109848 CM091751.1 scf7180000184217 98.04 True fake: scaffold gap size wrong estimation (local) 19045652 19046429 113103 113880 CM091751.1 scf7180000184217 99.61 True indel: indel (<= 5bp) 19046431 19047598 113881 115048 CM091751.1 scf7180000184217 98.89 True local misassembly 19048735 19050087 115899 117251 CM091751.1 scf7180000184217 96.16 True indel: indel (<= 5bp) 19050088 19051006 117253 118171 CM091751.1 scf7180000184217 98.91 True indel: indel (<= 5bp) 19051007 19052819 118173 119985 CM091751.1 scf7180000184217 99.5 True fake: scaffold gap size wrong estimation (local) 19054020 19055170 120966 122116 CM091751.1 scf7180000184217 99.57 True fake: scaffold gap size wrong estimation (local) 19057434 19058521 124294 125381 CM091751.1 scf7180000184217 99.72 True fake: scaffold gap size wrong estimation (local) 19059398 19061956 126143 128713 CM091751.1 scf7180000184217 98.48 True fake: scaffold gap size wrong estimation (local) 19063037 19065333 129401 131695 CM091751.1 scf7180000184217 99.17 True fake: scaffold gap size wrong estimation (local) 19065559 19066368 131996 132805 CM091751.1 scf7180000184217 99.75 True fake: scaffold gap size wrong estimation (local) 19067142 19067759 133368 133985 CM091751.1 scf7180000184217 99.51 True fake: scaffold gap size wrong estimation (local) 19068482 19069202 134739 135459 CM091751.1 scf7180000184217 99.03 True fake: scaffold gap size wrong estimation (local) 19070949 19071527 137140 137718 CM091751.1 scf7180000184217 98.79 True indel: indel (> 5bp) 19071712 19073348 137885 139521 CM091751.1 scf7180000184217 95.72 True fake: scaffold gap size wrong estimation (local) 19075801 19083682 141533 149394 CM091751.1 scf7180000184217 98.08 True fake: scaffold gap size wrong estimation (local) 19083895 19085567 149581 151206 CM091751.1 scf7180000184217 96.59 True fake: scaffold gap size wrong estimation (local) 19086728 19089574 151837 154686 CM091751.1 scf7180000184217 99.58 True fake: scaffold gap size wrong estimation (local) 19089762 19101496 154867 166223 CM091751.1 scf7180000184217 95.09 True fake: scaffold gap size wrong estimation (local) 19101587 19104751 166334 169466 CM091751.1 scf7180000184217 98.39 True fake: scaffold gap size wrong estimation (local) 19105048 19108642 169600 173194 CM091751.1 scf7180000184217 98.81 True fake: scaffold gap size wrong estimation (local) 19108963 19149890 173462 212926 CM091751.1 scf7180000184217 95.5 True translocation, scaffold gap is present 3317116 3318805 214777 213088 CM091759.1 scf7180000184217 100.0 True indel: indel (<= 5bp) 3314984 3317115 216910 214779 CM091759.1 scf7180000184217 97.0 True fake: scaffold gap size wrong estimation (local) 3313265 3314371 218719 217613 CM091759.1 scf7180000184217 99.28 True fake: scaffold gap size wrong estimation (local) 3310921 3311962 221075 220035 CM091759.1 scf7180000184217 97.5 True fake: scaffold gap size wrong estimation (local) 3307882 3309161 224294 223015 CM091759.1 scf7180000184217 99.84 True fake: scaffold gap size wrong estimation (local) 3293489 3307722 238742 224674 CM091759.1 scf7180000184217 98.48 True indel: indel (> 5bp) 3292826 3293360 239389 238855 CM091759.1 scf7180000184217 100.0 True fake: scaffold gap size wrong estimation (local) 3229942 3291591 301175 240017 CM091759.1 scf7180000184217 99.08 True fake: scaffold gap size wrong estimation (local) 3203935 3229795 327113 301297 CM091759.1 scf7180000184217 99.76 True fake: scaffold gap size wrong estimation (local) 3133385 3203724 397632 327289 CM091759.1 scf7180000184217 99.9 True fake: scaffold gap size wrong estimation (local) 3127540 3133195 403481 397827 CM091759.1 scf7180000184217 99.96 True fake: scaffold gap size wrong estimation (local) 3078577 3126755 452233 403986 CM091759.1 scf7180000184217 99.74 True fake: scaffold gap size wrong estimation (local) 2969148 3078341 561537 452316 CM091759.1 scf7180000184217 99.92 True fake: scaffold gap size wrong estimation (local) 2963759 2968438 566601 561903 CM091759.1 scf7180000184217 99.89 True translocation, scaffold gap is present 3573151 3574973 566817 568647 CM091768.1 scf7180000184217 98.9 True fake: scaffold gap size wrong estimation (local) 3575811 3578220 569400 571808 CM091768.1 scf7180000184217 99.46 True fake: scaffold gap size wrong estimation (local) 3579051 3583666 572378 576992 CM091768.1 scf7180000184217 99.83 True fake: scaffold gap size wrong estimation (local) 3583736 3595518 577098 588627 CM091768.1 scf7180000184217 96.62 True CONTIG scf7180000184217 588627 misassembled 14492681 14493234 1421 868 CM091756.1 scf7180000184218 100.0 True fake: scaffold gap size wrong estimation (local) 14490804 14492030 3064 1787 CM091756.1 scf7180000184218 96.74 True fake: scaffold gap size wrong estimation (local) 14448482 14489418 45002 4066 CM091756.1 scf7180000184218 99.78 True fake: scaffold gap size wrong estimation (local) 14405764 14448147 87411 45790 CM091756.1 scf7180000184218 95.83 True fake: scaffold gap size wrong estimation (local) 14401230 14405499 91913 87644 CM091756.1 scf7180000184218 99.95 True fake: scaffold gap size wrong estimation (local) 14399080 14400467 93830 92443 CM091756.1 scf7180000184218 99.86 True fake: scaffold gap size wrong estimation (local) 14386514 14398992 106232 93912 CM091756.1 scf7180000184218 98.09 True fake: scaffold gap size wrong estimation (local) 14369234 14386314 123118 106429 CM091756.1 scf7180000184218 96.92 True fake: scaffold gap size wrong estimation (local) 14282233 14368455 209952 123751 CM091756.1 scf7180000184218 99.5 True fake: scaffold gap size wrong estimation (local) 14212960 14281957 278176 210030 CM091756.1 scf7180000184218 98.23 True fake: scaffold gap size wrong estimation (local) 14209674 14212872 281467 278274 CM091756.1 scf7180000184218 99.56 True indel: indel (> 5bp) 14192494 14209512 298553 281658 CM091756.1 scf7180000184218 98.83 True fake: scaffold gap size wrong estimation (local) 14146746 14191882 343922 298816 CM091756.1 scf7180000184218 98.71 True fake: scaffold gap size wrong estimation (local) 13931573 14145656 558443 344812 CM091756.1 scf7180000184218 99.35 True fake: scaffold gap size wrong estimation (local) 13911045 13928635 577608 559999 CM091756.1 scf7180000184218 99.65 True indel: indel (> 5bp) 13870871 13910699 617851 577911 CM091756.1 scf7180000184218 99.18 True fake: scaffold gap size wrong estimation (local) 13864364 13870603 624412 618198 CM091756.1 scf7180000184218 98.99 True fake: scaffold gap size wrong estimation (local) 13845871 13863945 642304 624608 CM091756.1 scf7180000184218 97.44 True fake: scaffold gap size wrong estimation (local) 13838594 13845140 649216 642670 CM091756.1 scf7180000184218 99.83 True fake: scaffold gap size wrong estimation (local) 13792511 13838413 695087 649400 CM091756.1 scf7180000184218 98.95 True fake: not a misassembly (possible transposable element) 8198804 8199363 695135 695694 CM091767.1 scf7180000184218 100.0 True fake: not a misassembly (possible transposable element) 13780626 13792376 707791 696041 CM091756.1 scf7180000184218 99.48 True fake: scaffold gap size wrong estimation (local) 13709714 13777565 778466 710445 CM091756.1 scf7180000184218 98.58 True fake: scaffold gap size wrong estimation (local) 13592823 13708186 895091 779890 CM091756.1 scf7180000184218 99.54 True fake: scaffold gap size wrong estimation (local) 13494345 13592739 993368 895216 CM091756.1 scf7180000184218 99.28 True fake: scaffold gap size wrong estimation (local) 13464314 13493781 1023863 994393 CM091756.1 scf7180000184218 99.76 True fake: scaffold gap size wrong estimation (local) 13415768 13464197 1072320 1023955 CM091756.1 scf7180000184218 99.58 True fake: scaffold gap size wrong estimation (local) 13385109 13415743 1103007 1072371 CM091756.1 scf7180000184218 99.57 True fake: scaffold gap size wrong estimation (local) 13235149 13384979 1252648 1103109 CM091756.1 scf7180000184218 99.35 True fake: scaffold gap size wrong estimation (local) 13214850 13235065 1273071 1252724 CM091756.1 scf7180000184218 98.42 True fake: scaffold gap size wrong estimation (local) 13171623 13214497 1315860 1273238 CM091756.1 scf7180000184218 98.55 True indel: indel (> 5bp) 13170396 13171557 1317108 1315947 CM091756.1 scf7180000184218 99.57 True fake: scaffold gap size wrong estimation (local) 13167856 13170222 1319636 1317277 CM091756.1 scf7180000184218 99.03 True local misassembly 13166189 13167403 1321360 1320145 CM091756.1 scf7180000184218 99.26 True indel: indel (> 5bp) 13106287 13166128 1380720 1321429 CM091756.1 scf7180000184218 98.25 True indel: indel (> 5bp) 13094602 13106245 1392433 1380788 CM091756.1 scf7180000184218 98.51 True fake: scaffold gap size wrong estimation (local) 13076603 13094449 1410496 1392749 CM091756.1 scf7180000184218 98.86 True fake: scaffold gap size wrong estimation (local) 12955245 13076404 1532429 1410656 CM091756.1 scf7180000184218 98.71 True fake: scaffold gap size wrong estimation (local) 12932923 12955134 1554755 1532526 CM091756.1 scf7180000184218 99.07 True fake: scaffold gap size wrong estimation (local) 12882021 12932768 1605947 1555251 CM091756.1 scf7180000184218 99.29 True fake: scaffold gap size wrong estimation (local) 12831220 12881149 1656072 1606319 CM091756.1 scf7180000184218 98.59 True fake: scaffold gap size wrong estimation (local) 12693099 12830337 1793652 1656385 CM091756.1 scf7180000184218 99.35 True fake: scaffold gap size wrong estimation (local) 12658084 12692412 1828252 1794133 CM091756.1 scf7180000184218 98.52 True fake: scaffold gap size wrong estimation (local) 12653719 12655535 1831518 1829699 CM091756.1 scf7180000184218 99.4 True fake: scaffold gap size wrong estimation (local) 12622533 12653894 1863329 1831982 CM091756.1 scf7180000184218 99.57 True fake: scaffold gap size wrong estimation (local) 12603536 12621767 1881934 1863744 CM091756.1 scf7180000184218 98.96 True fake: scaffold gap size wrong estimation (local) 12600744 12602788 1884387 1882339 CM091756.1 scf7180000184218 98.88 True fake: scaffold gap size wrong estimation (local) 12497180 12599976 1987016 1884718 CM091756.1 scf7180000184218 98.41 True fake: scaffold gap size wrong estimation (local) 12410574 12497033 2073359 1987172 CM091756.1 scf7180000184218 99.12 True indel: indel (<= 5bp) 12320224 12410483 2162644 2073449 CM091756.1 scf7180000184218 98.16 True translocation 4323501 4551306 2162645 2386150 CM091757.1 scf7180000184218 97.67 True indel: indel (> 5bp) 4551422 4835658 2386283 2670059 CM091757.1 scf7180000184218 99.36 True indel: indel (> 5bp) 4835737 5064662 2670157 2899119 CM091757.1 scf7180000184218 99.47 True fake: scaffold gap size wrong estimation (local) 5064765 5175938 2899206 3010459 CM091757.1 scf7180000184218 99.62 True fake: scaffold gap size wrong estimation (local) 5177213 5262460 3011145 3096391 CM091757.1 scf7180000184218 99.53 True fake: not a misassembly (possible transposable element) 5195363 5199930 3100994 3096429 CM091756.1 scf7180000184218 99.54 True fake: not a misassembly (possible transposable element) 5262423 5449992 3101022 3284870 CM091757.1 scf7180000184218 97.53 True CONTIG scf7180000184218 3284898 misassembled 15444464 15462491 18032 1 CM091751.1 scf7180000184219 99.84 True fake: scaffold gap size wrong estimation (local) 15351537 15443089 109704 18893 CM091751.1 scf7180000184219 98.8 True fake: scaffold gap size wrong estimation (local) 15318749 15351347 142502 109902 CM091751.1 scf7180000184219 99.59 True fake: scaffold gap size wrong estimation (local) 15317005 15318231 144211 142981 CM091751.1 scf7180000184219 99.11 True fake: scaffold gap size wrong estimation (local) 15316255 15316945 144951 144261 CM091751.1 scf7180000184219 99.42 True indel: indel (> 5bp) 15315549 15316241 145670 144978 CM091751.1 scf7180000184219 99.28 True fake: scaffold gap size wrong estimation (local) 15314938 15315548 146308 145698 CM091751.1 scf7180000184219 99.84 True indel: indel (<= 5bp) 15313745 15314937 147504 146312 CM091751.1 scf7180000184219 100.0 True indel: indel (<= 5bp) 15312765 15313744 148485 147506 CM091751.1 scf7180000184219 99.59 True indel: indel (<= 5bp) 15311931 15312764 149320 148487 CM091751.1 scf7180000184219 99.64 True fake: scaffold gap size wrong estimation (local) 15309608 15310277 151294 150625 CM091751.1 scf7180000184219 97.01 True fake: scaffold gap size wrong estimation (local) 15285921 15309279 175351 151607 CM091751.1 scf7180000184219 96.92 True fake: scaffold gap size wrong estimation (local) 15274341 15285660 186764 175533 CM091751.1 scf7180000184219 97.96 True fake: scaffold gap size wrong estimation (local) 15272294 15273008 188265 187551 CM091751.1 scf7180000184219 99.58 True local misassembly 15270292 15271758 190267 188801 CM091751.1 scf7180000184219 99.59 True indel: indel (> 5bp) 15267111 15270150 193454 190415 CM091751.1 scf7180000184219 98.85 True indel: indel (<= 5bp) 15265929 15267110 194638 193457 CM091751.1 scf7180000184219 99.41 True fake: scaffold gap size wrong estimation (local) 15247784 15263307 210579 195073 CM091751.1 scf7180000184219 99.23 True fake: scaffold gap size wrong estimation (local) 15239905 15246667 217761 211030 CM091751.1 scf7180000184219 98.8 True translocation 1836729 1848284 229247 217762 CM091755.1 scf7180000184219 98.68 True fake: scaffold gap size wrong estimation (local) 1835671 1836574 230294 229391 CM091755.1 scf7180000184219 99.67 True fake: scaffold gap size wrong estimation (local) 1832563 1834291 233348 231620 CM091755.1 scf7180000184219 99.88 True indel: indel (<= 5bp) 1830745 1832562 235168 233351 CM091755.1 scf7180000184219 98.57 True local misassembly 1828916 1829730 236170 235356 CM091755.1 scf7180000184219 98.9 True fake: scaffold gap size wrong estimation (local) 1823765 1828727 241675 236713 CM091755.1 scf7180000184219 99.66 True fake: scaffold gap size wrong estimation (local) 1819147 1821779 245809 243177 CM091755.1 scf7180000184219 99.7 True fake: scaffold gap size wrong estimation (local) 1817377 1819146 247610 245841 CM091755.1 scf7180000184219 98.36 True local misassembly 1815215 1815917 249469 248767 CM091755.1 scf7180000184219 99.29 True indel: indel (<= 5bp) 1814435 1815214 250250 249471 CM091755.1 scf7180000184219 99.87 True indel: indel (> 5bp) 1813607 1814434 251085 250258 CM091755.1 scf7180000184219 99.64 True fake: scaffold gap size wrong estimation (local) 1811804 1812765 252874 251913 CM091755.1 scf7180000184219 99.79 True fake: scaffold gap size wrong estimation (local) 1810347 1811385 254356 253318 CM091755.1 scf7180000184219 97.21 True local misassembly 1809819 1810346 255293 254766 CM091755.1 scf7180000184219 95.64 True fake: scaffold gap size wrong estimation (local) 1491727 1808720 572016 256053 CM091755.1 scf7180000184219 99.5 True fake: scaffold gap size wrong estimation (local) 1487191 1488988 574637 572840 CM091755.1 scf7180000184219 99.94 True CONTIG scf7180000184219 574659 misassembled 3923811 3926946 263 3419 CM091757.1 scf7180000184220 99.68 True translocation, scaffold gap is present 11051036 11080864 3503 33256 CM091758.1 scf7180000184220 99.28 True fake: scaffold gap size wrong estimation (local) 11081323 11084882 33483 37042 CM091758.1 scf7180000184220 99.86 True fake: scaffold gap size wrong estimation (local) 11086478 11087741 37704 38967 CM091758.1 scf7180000184220 98.81 True fake: scaffold gap size wrong estimation (local) 11088262 11091204 39315 42227 CM091758.1 scf7180000184220 96.37 True fake: scaffold gap size wrong estimation (local) 11092019 11142636 42836 92793 CM091758.1 scf7180000184220 98.05 True translocation 3060616 3061161 92794 93340 CM091757.1 scf7180000184220 97.26 True fake: scaffold gap size wrong estimation (local) 3062087 3063019 94250 95182 CM091757.1 scf7180000184220 99.57 True fake: scaffold gap size wrong estimation (local) 3064581 3066257 96351 98027 CM091757.1 scf7180000184220 95.17 True fake: scaffold gap size wrong estimation (local) 3067349 3070741 99105 102498 CM091757.1 scf7180000184220 99.5 True fake: scaffold gap size wrong estimation (local) 3070847 3086650 102597 118222 CM091757.1 scf7180000184220 97.79 True fake: scaffold gap size wrong estimation (local) 3087282 3139788 118529 170177 CM091757.1 scf7180000184220 95.74 True indel: indel (<= 5bp) 3139855 3174356 170249 204766 CM091757.1 scf7180000184220 99.24 True fake: scaffold gap size wrong estimation (local) 3174630 3225813 204849 256119 CM091757.1 scf7180000184220 99.37 True fake: scaffold gap size wrong estimation (local) 3225986 3250045 256267 280402 CM091757.1 scf7180000184220 99.12 True fake: scaffold gap size wrong estimation (local) 3250205 3259998 280540 290303 CM091757.1 scf7180000184220 99.05 True fake: scaffold gap size wrong estimation (local) 3260094 3279576 290388 309860 CM091757.1 scf7180000184220 99.01 True fake: scaffold gap size wrong estimation (extensive) 3288282 3305331 310630 327673 CM091757.1 scf7180000184220 98.74 True indel: indel (> 5bp) 3305664 3306553 328064 328957 CM091757.1 scf7180000184220 98.55 True indel: indel (<= 5bp) 3306579 3308267 328986 330675 CM091757.1 scf7180000184220 99.64 True indel: indel (<= 5bp) 3308425 3311596 330831 334024 CM091757.1 scf7180000184220 99.09 True indel: indel (<= 5bp) 3311847 3322742 334274 345168 CM091757.1 scf7180000184220 99.51 True fake: scaffold gap size wrong estimation (local) 3323248 3358436 345448 380193 CM091757.1 scf7180000184220 98.01 True fake: scaffold gap size wrong estimation (local) 3358696 3361577 380453 383341 CM091757.1 scf7180000184220 99.62 True fake: scaffold gap size wrong estimation (local) 3361694 3422821 383460 444224 CM091757.1 scf7180000184220 98.7 True fake: scaffold gap size wrong estimation (local) 3422959 3571289 444355 590064 CM091757.1 scf7180000184220 97.83 True local misassembly 3571547 3630545 590140 649170 CM091757.1 scf7180000184220 98.23 True fake: scaffold gap size wrong estimation (local) 3630964 3658645 649318 677051 CM091757.1 scf7180000184220 99.28 True fake: scaffold gap size wrong estimation (local) 3658826 3688641 677238 707100 CM091757.1 scf7180000184220 99.32 True fake: scaffold gap size wrong estimation (local) 3688895 3715346 707299 733471 CM091757.1 scf7180000184220 97.47 True fake: scaffold gap size wrong estimation (local) 3715585 3738824 733641 756319 CM091757.1 scf7180000184220 96.14 True fake: scaffold gap size wrong estimation (local) 3739327 3748872 757037 766401 CM091757.1 scf7180000184220 97.19 True fake: scaffold gap size wrong estimation (local) 3749366 3758046 766654 775151 CM091757.1 scf7180000184220 96.86 True fake: scaffold gap size wrong estimation (local) 3758558 3770509 775351 787391 CM091757.1 scf7180000184220 95.4 True fake: scaffold gap size wrong estimation (local) 3771445 3772273 788333 789161 CM091757.1 scf7180000184220 99.4 True local misassembly 3773483 3773989 789949 790455 CM091757.1 scf7180000184220 100.0 True indel: indel (<= 5bp) 3773990 3774619 790457 791086 CM091757.1 scf7180000184220 99.52 True indel: indel (<= 5bp) 3774620 3775301 791088 791769 CM091757.1 scf7180000184220 99.56 True indel: indel (> 5bp) 3775629 3776441 792086 792898 CM091757.1 scf7180000184220 99.02 True fake: scaffold gap size wrong estimation (local) 3777669 3845752 793956 860842 CM091757.1 scf7180000184220 97.73 True indel: indel (<= 5bp) 3845809 3908863 860904 924030 CM091757.1 scf7180000184220 99.36 True fake: scaffold gap size wrong estimation (local) 3908978 3920648 924176 935822 CM091757.1 scf7180000184220 99.03 True local misassembly 3927315 3952789 935823 961293 CM091757.1 scf7180000184220 99.29 True fake: scaffold gap size wrong estimation (local) 3952981 3956138 961428 964572 CM091757.1 scf7180000184220 99.24 True fake: scaffold gap size wrong estimation (local) 3956313 3964354 964706 972730 CM091757.1 scf7180000184220 98.17 True fake: scaffold gap size wrong estimation (local) 3964657 3965565 973072 973966 CM091757.1 scf7180000184220 97.64 True fake: scaffold gap size wrong estimation (local) 3965860 3971773 974122 980034 CM091757.1 scf7180000184220 98.14 True fake: scaffold gap size wrong estimation (local) 3971909 4030834 980097 1037346 CM091757.1 scf7180000184220 96.45 True fake: scaffold gap size wrong estimation (local) 4031097 4033185 1037376 1039524 CM091757.1 scf7180000184220 97.04 True fake: scaffold gap size wrong estimation (local) 4033569 4036733 1039729 1042896 CM091757.1 scf7180000184220 99.59 True fake: scaffold gap size wrong estimation (local) 4043730 4044453 1042917 1043640 CM091757.1 scf7180000184220 99.45 True translocation, scaffold gap is present 6429416 6430600 1043661 1044845 CM091755.1 scf7180000184220 99.77 True translocation 4036666 4039423 1044846 1047603 CM091757.1 scf7180000184220 99.6 True indel: indel (<= 5bp) 4039859 4040465 1048041 1048647 CM091757.1 scf7180000184220 99.84 True indel: indel (<= 5bp) 4040716 4041239 1048899 1049422 CM091757.1 scf7180000184220 99.62 True indel: indel (<= 5bp) 4041240 4042559 1049424 1050743 CM091757.1 scf7180000184220 99.7 True local misassembly 4043057 4044370 1051246 1052559 CM091757.1 scf7180000184220 99.54 True fake: scaffold gap size wrong estimation (local) 4045823 4050101 1053384 1057662 CM091757.1 scf7180000184220 99.37 True fake: scaffold gap size wrong estimation (local) 4050449 4093800 1057818 1101171 CM091757.1 scf7180000184220 99.62 True fake: scaffold gap size wrong estimation (local) 4094005 4144781 1101288 1152092 CM091757.1 scf7180000184220 99.41 True fake: scaffold gap size wrong estimation (local) 4145080 4213920 1152666 1221234 CM091757.1 scf7180000184220 99.22 True fake: scaffold gap size wrong estimation (local) 4214644 4262399 1221420 1268859 CM091757.1 scf7180000184220 98.58 True indel: indel (<= 5bp) 4262477 4289043 1268940 1295518 CM091757.1 scf7180000184220 99.59 True CONTIG scf7180000184220 1297222 misassembled 17659649 17665283 51 5685 CM091751.1 scf7180000184221 99.91 True fake: scaffold gap size wrong estimation (local) 17668766 17679986 6567 17799 CM091751.1 scf7180000184221 99.74 True fake: scaffold gap size wrong estimation (local) 17680861 17683235 18088 20485 CM091751.1 scf7180000184221 99.79 True fake: scaffold gap size wrong estimation (local) 17685517 17686156 22288 22927 CM091751.1 scf7180000184221 100.0 True fake: scaffold gap size wrong estimation (local) 17687338 17688453 24471 25605 CM091751.1 scf7180000184221 97.15 True translocation 2952792 2955216 28045 25606 CM091752.1 scf7180000184221 98.81 True translocation 5035516 5038096 28046 30615 CM091754.1 scf7180000184221 99.03 True fake: not a misassembly (possible transposable element) 784871 786438 32213 30655 CM091756.1 scf7180000184221 99.12 True fake: not a misassembly (possible transposable element) 5038670 5072301 32214 65876 CM091754.1 scf7180000184221 99.98 True fake: scaffold gap size wrong estimation (local) 5072401 5080543 65972 74532 CM091754.1 scf7180000184221 95.33 True fake: scaffold gap size wrong estimation (local) 5081417 5084065 74914 77562 CM091754.1 scf7180000184221 99.74 True fake: scaffold gap size wrong estimation (local) 5088369 5097824 81022 90477 CM091754.1 scf7180000184221 100.0 True fake: scaffold gap size wrong estimation (local) 5098072 5121131 90599 113549 CM091754.1 scf7180000184221 99.26 True fake: scaffold gap size wrong estimation (local) 5121951 5141483 114031 133575 CM091754.1 scf7180000184221 99.93 True fake: scaffold gap size wrong estimation (local) 5142528 5179643 133758 170869 CM091754.1 scf7180000184221 99.92 True fake: scaffold gap size wrong estimation (local) 5179875 5222657 170940 213654 CM091754.1 scf7180000184221 99.26 True fake: scaffold gap size wrong estimation (local) 5222845 5224563 213774 215492 CM091754.1 scf7180000184221 99.83 True fake: scaffold gap size wrong estimation (local) 5224758 5258599 215578 249440 CM091754.1 scf7180000184221 99.92 True fake: scaffold gap size wrong estimation (local) 5259402 5259938 249758 250294 CM091754.1 scf7180000184221 99.63 True fake: scaffold gap size wrong estimation (local) 5260730 5261691 250569 251530 CM091754.1 scf7180000184221 98.75 True fake: scaffold gap size wrong estimation (local) 5262519 5296212 252206 285406 CM091754.1 scf7180000184221 98.48 True fake: scaffold gap size wrong estimation (local) 5297419 5303036 286035 291653 CM091754.1 scf7180000184221 99.98 True fake: scaffold gap size wrong estimation (local) 5304197 5306272 292105 294180 CM091754.1 scf7180000184221 98.94 True indel: indel (<= 5bp) 5306273 5308212 294182 296121 CM091754.1 scf7180000184221 100.0 True indel: indel (<= 5bp) 5308214 5309799 296122 297707 CM091754.1 scf7180000184221 100.0 True indel: indel (<= 5bp) 5310192 5315613 298098 303519 CM091754.1 scf7180000184221 100.0 True fake: scaffold gap size wrong estimation (local) 5317070 5333234 305144 321312 CM091754.1 scf7180000184221 99.9 True fake: scaffold gap size wrong estimation (local) 5335693 5336349 322807 323487 CM091754.1 scf7180000184221 99.39 True fake: scaffold gap size wrong estimation (local) 5337305 5338368 324913 325977 CM091754.1 scf7180000184221 99.91 True fake: scaffold gap size wrong estimation (local) 5339489 5341291 326876 328678 CM091754.1 scf7180000184221 100.0 True fake: scaffold gap size wrong estimation (local) 5341608 5344161 329214 331767 CM091754.1 scf7180000184221 99.88 True fake: scaffold gap size wrong estimation (local) 5345275 5346350 332037 333112 CM091754.1 scf7180000184221 99.91 True fake: scaffold gap size wrong estimation (local) 5346440 5350431 333201 337192 CM091754.1 scf7180000184221 99.72 True fake: scaffold gap size wrong estimation (local) 5350781 5388627 337289 375136 CM091754.1 scf7180000184221 99.88 True fake: scaffold gap size wrong estimation (local) 5388942 5416173 375209 402434 CM091754.1 scf7180000184221 99.94 True fake: scaffold gap size wrong estimation (local) 5416322 5439678 402539 426667 CM091754.1 scf7180000184221 96.91 True fake: scaffold gap size wrong estimation (local) 5439798 5460983 426754 447305 CM091754.1 scf7180000184221 96.82 True fake: scaffold gap size wrong estimation (local) 5464054 5525589 447980 511051 CM091754.1 scf7180000184221 96.7 True fake: scaffold gap size wrong estimation (local) 5526026 5537801 511144 522945 CM091754.1 scf7180000184221 99.42 True fake: scaffold gap size wrong estimation (local) 5538758 5543453 523443 528298 CM091754.1 scf7180000184221 96.11 True fake: scaffold gap size wrong estimation (local) 5546460 5548072 529810 531455 CM091754.1 scf7180000184221 99.2 True fake: scaffold gap size wrong estimation (local) 5548897 5555780 532093 538887 CM091754.1 scf7180000184221 98.13 True fake: scaffold gap size wrong estimation (local) 5556204 5558889 539160 541845 CM091754.1 scf7180000184221 99.85 True fake: scaffold gap size wrong estimation (local) 5559803 5561778 542348 544326 CM091754.1 scf7180000184221 98.99 True fake: scaffold gap size wrong estimation (local) 5562943 5623023 545083 602350 CM091754.1 scf7180000184221 95.21 True fake: scaffold gap size wrong estimation (local) 5623171 5703039 602469 682207 CM091754.1 scf7180000184221 99.66 True fake: scaffold gap size wrong estimation (local) 5703550 5713327 682433 692210 CM091754.1 scf7180000184221 99.85 True fake: scaffold gap size wrong estimation (local) 5713668 5721505 692448 700398 CM091754.1 scf7180000184221 95.63 True fake: scaffold gap size wrong estimation (local) 5723131 5724496 701548 702917 CM091754.1 scf7180000184221 99.93 True indel: indel (> 5bp) 5724526 5727569 702957 706000 CM091754.1 scf7180000184221 99.87 True local misassembly 5732859 5733626 706421 707188 CM091754.1 scf7180000184221 100.0 True local misassembly 5727419 5731944 707519 712045 CM091754.1 scf7180000184221 99.89 True fake: scaffold gap size wrong estimation (local) 5733828 5734526 713553 714251 CM091754.1 scf7180000184221 100.0 True translocation, scaffold gap is present 2928403 2929658 715572 714302 CM091752.1 scf7180000184221 99.04 True CONTIG scf7180000184221 715719 misassembled 10558999 10578709 37 19588 CM091762.1 scf7180000184222 98.46 True indel: indel (> 5bp) 10578762 10622350 19630 63216 CM091762.1 scf7180000184222 99.36 True indel: indel (> 5bp) 10622591 10647002 63484 87923 CM091762.1 scf7180000184222 99.34 True indel: indel (> 5bp) 10647064 10691339 88007 132288 CM091762.1 scf7180000184222 99.29 True fake: scaffold gap size wrong estimation (local) 10691227 10722279 132824 163667 CM091762.1 scf7180000184222 98.38 True fake: scaffold gap size wrong estimation (local) 10722429 10758607 163793 200073 CM091762.1 scf7180000184222 99.09 True local misassembly 10758765 10775035 200135 217115 CM091762.1 scf7180000184222 95.46 True fake: scaffold gap size wrong estimation (local) 10775245 10778689 217287 220745 CM091762.1 scf7180000184222 99.24 True indel: stretch of mismatches 10778690 10800069 220746 241941 CM091762.1 scf7180000184222 98.23 True fake: scaffold gap size wrong estimation (local) 10800778 10834136 242472 275827 CM091762.1 scf7180000184222 99.2 True fake: scaffold gap size wrong estimation (local) 10834330 10845308 275957 286905 CM091762.1 scf7180000184222 98.95 True fake: scaffold gap size wrong estimation (local) 10845515 10847275 287065 288816 CM091762.1 scf7180000184222 98.81 True indel: indel (> 5bp) 10847329 10900704 288884 342275 CM091762.1 scf7180000184222 99.44 True indel: indel (> 5bp) 10900757 10969220 342298 410805 CM091762.1 scf7180000184222 99.36 True fake: scaffold gap size wrong estimation (local) 10969432 11003368 410989 445095 CM091762.1 scf7180000184222 98.69 True fake: not a misassembly (possible transposable element) 3595286 3596475 445116 446306 CM091755.1 scf7180000184222 99.92 True fake: not a misassembly (possible transposable element) 11003122 11014778 446307 457941 CM091762.1 scf7180000184222 99.2 True fake: scaffold gap size wrong estimation (local) 11014979 11061540 458011 504592 CM091762.1 scf7180000184222 99.2 True indel: indel (> 5bp) 11061597 11202803 504631 645923 CM091762.1 scf7180000184222 99.5 True fake: scaffold gap size wrong estimation (local) 11203014 11207809 646088 650881 CM091762.1 scf7180000184222 99.65 True fake: scaffold gap size wrong estimation (local) 11207908 11230416 650975 673527 CM091762.1 scf7180000184222 99.46 True fake: scaffold gap size wrong estimation (local) 11230655 11267201 673620 710166 CM091762.1 scf7180000184222 98.07 True fake: scaffold gap size wrong estimation (local) 11267430 11296573 710308 739490 CM091762.1 scf7180000184222 99.38 True fake: scaffold gap size wrong estimation (local) 11297023 11298526 739964 741468 CM091762.1 scf7180000184222 99.73 True fake: scaffold gap size wrong estimation (local) 11299493 11304088 742170 746768 CM091762.1 scf7180000184222 99.72 True fake: scaffold gap size wrong estimation (local) 11304710 11430786 747426 873073 CM091762.1 scf7180000184222 98.59 True translocation 1894369 1895386 874091 873074 CM091751.1 scf7180000184222 98.18 True fake: scaffold gap size wrong estimation (local) 1886496 1894068 881908 874269 CM091751.1 scf7180000184222 98.46 True fake: scaffold gap size wrong estimation (local) 1885282 1885792 882988 882478 CM091751.1 scf7180000184222 98.83 True local misassembly 1880188 1880710 883554 883032 CM091751.1 scf7180000184222 99.24 True indel: indel (<= 5bp) 1878474 1880185 885266 883555 CM091751.1 scf7180000184222 99.77 True indel: indel (> 5bp) 1876840 1878189 886879 885530 CM091751.1 scf7180000184222 99.7 True local misassembly 1874753 1875637 888974 888090 CM091751.1 scf7180000184222 99.55 True indel: stretch of mismatches 1874131 1874746 889596 888981 CM091751.1 scf7180000184222 99.03 True fake: scaffold gap size wrong estimation (local) 1871770 1873748 891980 890002 CM091751.1 scf7180000184222 99.55 True fake: scaffold gap size wrong estimation (local) 1869796 1870936 893776 892636 CM091751.1 scf7180000184222 99.12 True indel: indel (<= 5bp) 1867515 1869418 896059 894156 CM091751.1 scf7180000184222 99.63 True indel: indel (<= 5bp) 1866923 1867514 896652 896061 CM091751.1 scf7180000184222 99.66 True local misassembly 1865070 1865975 898503 897598 CM091751.1 scf7180000184222 99.56 True indel: indel (<= 5bp) 1864064 1864673 899511 898902 CM091751.1 scf7180000184222 98.69 True local misassembly 1861915 1863539 901664 900040 CM091751.1 scf7180000184222 99.69 True indel: indel (<= 5bp) 1860605 1861914 902975 901666 CM091751.1 scf7180000184222 99.85 True fake: scaffold gap size wrong estimation (local) 1858615 1860042 904956 903533 CM091751.1 scf7180000184222 98.38 True fake: scaffold gap size wrong estimation (local) 1845016 1858108 917744 905103 CM091751.1 scf7180000184222 95.25 True fake: scaffold gap size wrong estimation (local) 1825865 1844695 936864 918006 CM091751.1 scf7180000184222 99.32 True indel: indel (> 5bp) 1813850 1825838 948827 936905 CM091751.1 scf7180000184222 98.3 True indel: indel (<= 5bp) 1812401 1813672 950281 949010 CM091751.1 scf7180000184222 97.72 True local misassembly 1811143 1812116 951349 950376 CM091751.1 scf7180000184222 99.9 True indel: indel (<= 5bp) 1809683 1810726 952807 951764 CM091751.1 scf7180000184222 99.72 True fake: not a misassembly (possible transposable element) 15365886 15366968 952808 953890 CM091755.1 scf7180000184222 99.26 True fake: not a misassembly (possible transposable element) 1807029 1807924 956600 955705 CM091751.1 scf7180000184222 99.67 True fake: scaffold gap size wrong estimation (local) 1806146 1806927 957510 956729 CM091751.1 scf7180000184222 99.62 True indel: indel (> 5bp) 1804756 1806143 958909 957522 CM091751.1 scf7180000184222 99.93 True indel: indel (<= 5bp) 1803970 1804755 959696 958911 CM091751.1 scf7180000184222 99.36 True indel: indel (<= 5bp) 1801953 1803495 961711 960169 CM091751.1 scf7180000184222 99.22 True local misassembly 1799986 1800965 962874 961895 CM091751.1 scf7180000184222 99.69 True indel: indel (> 5bp) 1799104 1799985 963772 962891 CM091751.1 scf7180000184222 99.66 True fake: scaffold gap size wrong estimation (local) 1798007 1798807 964953 964153 CM091751.1 scf7180000184222 99.38 True indel: indel (<= 5bp) 1796686 1798001 966269 964954 CM091751.1 scf7180000184222 99.77 True local misassembly 1794376 1795285 968627 967718 CM091751.1 scf7180000184222 100.0 True local misassembly 1791369 1793789 971636 969216 CM091751.1 scf7180000184222 99.46 True indel: indel (<= 5bp) 1789524 1791146 973483 971861 CM091751.1 scf7180000184222 99.69 True fake: scaffold gap size wrong estimation (local) 1787952 1788457 974763 974258 CM091751.1 scf7180000184222 99.8 True indel: indel (<= 5bp) 1786671 1787621 976046 975096 CM091751.1 scf7180000184222 99.79 True local misassembly 1785173 1785799 977546 976920 CM091751.1 scf7180000184222 98.88 True indel: indel (<= 5bp) 1783575 1785169 979141 977547 CM091751.1 scf7180000184222 99.69 True local misassembly 1781841 1782457 980872 980256 CM091751.1 scf7180000184222 100.0 True indel: indel (<= 5bp) 1780374 1781385 982334 981323 CM091751.1 scf7180000184222 97.92 True local misassembly 1779138 1779975 983172 982335 CM091751.1 scf7180000184222 99.4 True fake: scaffold gap size wrong estimation (local) 1775472 1776062 985006 984416 CM091751.1 scf7180000184222 99.83 True indel: stretch of mismatches 1774712 1775405 985766 985073 CM091751.1 scf7180000184222 99.57 True fake: scaffold gap size wrong estimation (local) 1767997 1778025 996099 986159 CM091751.1 scf7180000184222 98.34 True fake: scaffold gap size wrong estimation (local) 1760140 1767642 1003767 996253 CM091751.1 scf7180000184222 99.36 True fake: scaffold gap size wrong estimation (local) 1757387 1759320 1006150 1004217 CM091751.1 scf7180000184222 99.53 True indel: indel (<= 5bp) 1755310 1757385 1008226 1006151 CM091751.1 scf7180000184222 99.9 True indel: indel (<= 5bp) 1753787 1755052 1009750 1008485 CM091751.1 scf7180000184222 99.53 True indel: indel (<= 5bp) 1752751 1753786 1010787 1009752 CM091751.1 scf7180000184222 99.61 True indel: indel (<= 5bp) 1752107 1752750 1011432 1010789 CM091751.1 scf7180000184222 100.0 True indel: indel (<= 5bp) 1750317 1752071 1013225 1011471 CM091751.1 scf7180000184222 98.06 True local misassembly 1749140 1750079 1014165 1013226 CM091751.1 scf7180000184222 99.57 True indel: indel (<= 5bp) 1748538 1749092 1014771 1014217 CM091751.1 scf7180000184222 99.82 True indel: indel (<= 5bp) 1747949 1748483 1015362 1014828 CM091751.1 scf7180000184222 100.0 True indel: indel (<= 5bp) 1746462 1747555 1016845 1015752 CM091751.1 scf7180000184222 99.73 True local misassembly 1744069 1744689 1019242 1018622 CM091751.1 scf7180000184222 99.84 True local misassembly 1743062 1743568 1020253 1019747 CM091751.1 scf7180000184222 99.61 True indel: indel (<= 5bp) 1740825 1742676 1022491 1020640 CM091751.1 scf7180000184222 99.73 True indel: indel (> 5bp) 1739306 1740824 1024019 1022501 CM091751.1 scf7180000184222 99.74 True indel: indel (<= 5bp) 1738713 1739304 1024611 1024020 CM091751.1 scf7180000184222 99.32 True indel: indel (<= 5bp) 1736192 1738712 1027133 1024613 CM091751.1 scf7180000184222 99.52 True indel: indel (<= 5bp) 1735448 1736191 1027878 1027135 CM091751.1 scf7180000184222 99.33 True indel: indel (<= 5bp) 1734628 1735447 1028699 1027880 CM091751.1 scf7180000184222 99.76 True indel: indel (<= 5bp) 1733226 1734626 1030100 1028700 CM091751.1 scf7180000184222 99.79 True indel: indel (<= 5bp) 1732420 1733224 1030905 1030101 CM091751.1 scf7180000184222 99.25 True indel: indel (<= 5bp) 1731587 1732419 1031739 1030907 CM091751.1 scf7180000184222 99.4 True local misassembly 1729103 1731077 1034229 1032255 CM091751.1 scf7180000184222 99.75 True indel: indel (> 5bp) 1725751 1728848 1037554 1034457 CM091751.1 scf7180000184222 99.26 True indel: indel (<= 5bp) 1724964 1725750 1038342 1037556 CM091751.1 scf7180000184222 99.75 True indel: indel (> 5bp) 1724006 1724537 1039292 1038761 CM091751.1 scf7180000184222 99.62 True indel: indel (<= 5bp) 1723322 1723872 1039978 1039428 CM091751.1 scf7180000184222 99.09 True local misassembly 1720374 1722715 1042923 1040582 CM091751.1 scf7180000184222 99.49 True local misassembly 1718150 1719139 1045151 1044162 CM091751.1 scf7180000184222 99.39 True local misassembly 1715970 1717245 1047334 1046059 CM091751.1 scf7180000184222 99.69 True indel: indel (<= 5bp) 1715333 1715853 1047974 1047454 CM091751.1 scf7180000184222 99.62 True indel: indel (> 5bp) 1714285 1715155 1049011 1048141 CM091751.1 scf7180000184222 99.77 True indel: stretch of mismatches 1713135 1714208 1050161 1049088 CM091751.1 scf7180000184222 99.91 True indel: indel (<= 5bp) 1711460 1713133 1051835 1050162 CM091751.1 scf7180000184222 99.4 True local misassembly 1710045 1710862 1053254 1052437 CM091751.1 scf7180000184222 99.76 True indel: indel (<= 5bp) 1708898 1710044 1054402 1053256 CM091751.1 scf7180000184222 99.74 True indel: indel (<= 5bp) 1707199 1708897 1056102 1054404 CM091751.1 scf7180000184222 99.59 True indel: indel (<= 5bp) 1705865 1707193 1057431 1056103 CM091751.1 scf7180000184222 99.62 True indel: indel (> 5bp) 1705295 1705851 1058007 1057451 CM091751.1 scf7180000184222 99.64 True indel: indel (<= 5bp) 1704186 1705293 1059115 1058008 CM091751.1 scf7180000184222 99.46 True indel: indel (<= 5bp) 1702471 1704185 1060835 1059121 CM091751.1 scf7180000184222 99.13 True indel: indel (> 5bp) 1699426 1702470 1063887 1060843 CM091751.1 scf7180000184222 98.26 True local misassembly 1696847 1698646 1066462 1064663 CM091751.1 scf7180000184222 99.56 True local misassembly 1689697 1690738 1067772 1066731 CM091751.1 scf7180000184222 98.94 True fake: scaffold gap size wrong estimation (local) 1688026 1688697 1069442 1068771 CM091751.1 scf7180000184222 99.7 True indel: indel (<= 5bp) 1686895 1688024 1070572 1069443 CM091751.1 scf7180000184222 99.73 True indel: indel (<= 5bp) 1685629 1686421 1071835 1071043 CM091751.1 scf7180000184222 99.62 True indel: indel (<= 5bp) 1684006 1685622 1073455 1071839 CM091751.1 scf7180000184222 99.81 True local misassembly 1682088 1682681 1075384 1074791 CM091751.1 scf7180000184222 99.49 True local misassembly 1680252 1680853 1077211 1076610 CM091751.1 scf7180000184222 99.0 True indel: indel (> 5bp) 1678248 1679803 1079222 1077667 CM091751.1 scf7180000184222 98.59 True indel: indel (<= 5bp) 1677167 1678245 1080301 1079223 CM091751.1 scf7180000184222 99.54 True local misassembly 1675838 1676510 1081625 1080953 CM091751.1 scf7180000184222 99.41 True indel: indel (<= 5bp) 1673673 1675404 1083786 1082055 CM091751.1 scf7180000184222 99.31 True indel: indel (<= 5bp) 1672636 1673672 1084828 1083792 CM091751.1 scf7180000184222 99.71 True indel: indel (<= 5bp) 1671024 1672635 1086441 1084830 CM091751.1 scf7180000184222 99.69 True local misassembly 1668761 1670028 1088714 1087447 CM091751.1 scf7180000184222 99.76 True indel: indel (<= 5bp) 1667744 1668361 1089735 1089118 CM091751.1 scf7180000184222 99.68 True indel: indel (<= 5bp) 1666442 1667366 1091039 1090115 CM091751.1 scf7180000184222 99.78 True indel: stretch of mismatches 1665604 1666163 1091877 1091318 CM091751.1 scf7180000184222 99.82 True indel: indel (<= 5bp) 1664779 1665602 1092701 1091878 CM091751.1 scf7180000184222 99.64 True indel: indel (> 5bp) 1664205 1664778 1093293 1092720 CM091751.1 scf7180000184222 98.61 True indel: indel (<= 5bp) 1662859 1664003 1094640 1093496 CM091751.1 scf7180000184222 99.83 True indel: indel (<= 5bp) 1660874 1662701 1096628 1094801 CM091751.1 scf7180000184222 99.89 True local misassembly 1659567 1660340 1097939 1097166 CM091751.1 scf7180000184222 99.35 True fake: scaffold gap size wrong estimation (local) 1657432 1658730 1100148 1098850 CM091751.1 scf7180000184222 99.62 True local misassembly 1655870 1656558 1101712 1101024 CM091751.1 scf7180000184222 99.56 True local misassembly 1655023 1655763 1102453 1101713 CM091751.1 scf7180000184222 99.19 True local misassembly 1653254 1653982 1104225 1103497 CM091751.1 scf7180000184222 99.18 True indel: indel (<= 5bp) 1652677 1653253 1104803 1104227 CM091751.1 scf7180000184222 100.0 True indel: indel (<= 5bp) 1652022 1652676 1105459 1104805 CM091751.1 scf7180000184222 98.93 True local misassembly 1650818 1651372 1106667 1106113 CM091751.1 scf7180000184222 99.28 True indel: indel (<= 5bp) 1650264 1650817 1107222 1106669 CM091751.1 scf7180000184222 98.92 True indel: indel (<= 5bp) 1647217 1650017 1110264 1107464 CM091751.1 scf7180000184222 99.54 True local misassembly 1645794 1646649 1111684 1110829 CM091751.1 scf7180000184222 99.65 True indel: indel (<= 5bp) 1645269 1645793 1112210 1111686 CM091751.1 scf7180000184222 99.24 True fake: scaffold gap size wrong estimation (local) 1636661 1644978 1120872 1112560 CM091751.1 scf7180000184222 98.9 True fake: scaffold gap size wrong estimation (local) 1602909 1636376 1154255 1121025 CM091751.1 scf7180000184222 97.94 True CONTIG scf7180000184222 1154266 misassembled 20915 49770 5 28965 CM091765.1 scf7180000184223 99.04 True local misassembly 49958 55297 29032 34303 CM091765.1 scf7180000184223 98.35 True indel: indel (> 5bp) 55591 104533 34616 83073 CM091765.1 scf7180000184223 98.73 True fake: scaffold gap size wrong estimation (local) 105416 125996 84425 104970 CM091765.1 scf7180000184223 99.38 True translocation 952824 954025 106189 104988 CM091763.1 scf7180000184223 99.92 True translocation, scaffold gap is present 104524 105435 106253 107164 CM091765.1 scf7180000184223 99.56 True relocation, scaffold gap is present, inconsistency = 24263 129774 221433 107240 198991 CM091765.1 scf7180000184223 99.12 True indel: indel (> 5bp) 221561 265289 199056 242792 CM091765.1 scf7180000184223 99.65 True translocation 4367682 4466073 341270 242813 CM091756.1 scf7180000184223 99.5 True fake: scaffold gap size wrong estimation (local) 4258432 4367532 450757 341769 CM091756.1 scf7180000184223 99.01 True local misassembly 4190038 4257796 519486 451718 CM091756.1 scf7180000184223 99.63 True fake: scaffold gap size wrong estimation (local) 4165042 4189857 544511 519681 CM091756.1 scf7180000184223 99.49 True indel: indel (> 5bp) 4091029 4165015 618565 544566 CM091756.1 scf7180000184223 99.31 True fake: scaffold gap size wrong estimation (local) 4072840 4090964 636777 618632 CM091756.1 scf7180000184223 99.1 True fake: not a misassembly (possible transposable element) 14263248 14263795 637346 636798 CM091758.1 scf7180000184223 99.69 True fake: not a misassembly (possible transposable element) 4058339 4072896 651516 637347 CM091756.1 scf7180000184223 96.67 True fake: scaffold gap size wrong estimation (local) 4049257 4058215 660604 651645 CM091756.1 scf7180000184223 99.44 True fake: scaffold gap size wrong estimation (local) 4017137 4049022 692706 660826 CM091756.1 scf7180000184223 99.2 True fake: scaffold gap size wrong estimation (local) 3946736 4016981 763009 692813 CM091756.1 scf7180000184223 99.31 True fake: scaffold gap size wrong estimation (local) 3852099 3946558 856441 763192 CM091756.1 scf7180000184223 97.89 True fake: scaffold gap size wrong estimation (local) 3744285 3852116 964451 856605 CM091756.1 scf7180000184223 99.36 True fake: not a misassembly (possible transposable element) 3671341 3672818 965929 964452 CM091752.1 scf7180000184223 99.86 True fake: not a misassembly (possible transposable element) 3730664 3744051 978775 965952 CM091756.1 scf7180000184223 95.3 True fake: scaffold gap size wrong estimation (local) 3706811 3730717 1002712 979035 CM091756.1 scf7180000184223 98.58 True indel: indel (> 5bp) 3675745 3706616 1033271 1002837 CM091756.1 scf7180000184223 97.92 True fake: scaffold gap size wrong estimation (local) 3669338 3675344 1039884 1033897 CM091756.1 scf7180000184223 99.22 True fake: scaffold gap size wrong estimation (local) 3637712 3669148 1071481 1040047 CM091756.1 scf7180000184223 99.43 True indel: indel (> 5bp) 3621961 3637480 1087273 1071755 CM091756.1 scf7180000184223 99.38 True fake: scaffold gap size wrong estimation (local) 3411343 3621789 1295150 1087413 CM091756.1 scf7180000184223 97.81 True fake: scaffold gap size wrong estimation (local) 3409531 3411500 1297542 1295588 CM091756.1 scf7180000184223 99.08 True fake: scaffold gap size wrong estimation (local) 3405679 3407102 1300001 1298578 CM091756.1 scf7180000184223 97.89 True fake: scaffold gap size wrong estimation (local) 3317390 3401331 1385370 1301378 CM091756.1 scf7180000184223 99.71 True fake: scaffold gap size wrong estimation (local) 3202270 3317270 1500381 1385470 CM091756.1 scf7180000184223 99.23 True indel: indel (<= 5bp) 3181907 3202223 1520369 1500430 CM091756.1 scf7180000184223 97.21 True indel: indel (<= 5bp) 3139641 3181825 1562589 1520450 CM091756.1 scf7180000184223 99.41 True fake: scaffold gap size wrong estimation (local) 3101365 3139464 1600770 1562782 CM091756.1 scf7180000184223 99.25 True fake: scaffold gap size wrong estimation (local) 3042250 3101158 1659917 1600902 CM091756.1 scf7180000184223 99.28 True fake: scaffold gap size wrong estimation (local) 2975213 3042142 1727629 1660018 CM091756.1 scf7180000184223 98.48 True fake: scaffold gap size wrong estimation (local) 2967315 2975013 1735480 1727787 CM091756.1 scf7180000184223 99.48 True fake: scaffold gap size wrong estimation (local) 2917147 2967230 1784872 1735546 CM091756.1 scf7180000184223 97.7 True indel: indel (> 5bp) 2860879 2917062 1841057 1785024 CM091756.1 scf7180000184223 98.63 True fake: scaffold gap size wrong estimation (local) 2834413 2860507 1867302 1841342 CM091756.1 scf7180000184223 98.68 True fake: scaffold gap size wrong estimation (local) 2779099 2834052 1923439 1868006 CM091756.1 scf7180000184223 98.27 True fake: scaffold gap size wrong estimation (local) 2522391 2778954 2179845 1923549 CM091756.1 scf7180000184223 99.22 True fake: scaffold gap size wrong estimation (local) 2417091 2521982 2285449 2180263 CM091756.1 scf7180000184223 99.09 True fake: scaffold gap size wrong estimation (local) 2388712 2416925 2313815 2285576 CM091756.1 scf7180000184223 99.41 True fake: not a misassembly (possible transposable element) 11153761 11154781 2314836 2313816 CM091761.1 scf7180000184223 99.9 True fake: not a misassembly (possible transposable element) 2313034 2388756 2390584 2314858 CM091756.1 scf7180000184223 99.47 True fake: scaffold gap size wrong estimation (local) 2297920 2312028 2405565 2391156 CM091756.1 scf7180000184223 97.43 True fake: scaffold gap size wrong estimation (local) 2285071 2297458 2418016 2405625 CM091756.1 scf7180000184223 99.64 True fake: scaffold gap size wrong estimation (local) 2257156 2284506 2445793 2418423 CM091756.1 scf7180000184223 99.08 True local misassembly 2260788 2261655 2446866 2445996 CM091756.1 scf7180000184223 99.08 True fake: scaffold gap size wrong estimation (local) 2172326 2257286 2531822 2446887 CM091756.1 scf7180000184223 99.53 True CONTIG scf7180000184223 2531822 misassembled 3726128 3728334 1 2224 CM091763.1 scf7180000184224 98.79 True indel: indel (<= 5bp) 3728433 3874273 2325 147107 CM091763.1 scf7180000184224 98.17 True fake: scaffold gap size wrong estimation (local) 3875339 3890028 147436 162146 CM091763.1 scf7180000184224 98.8 True fake: scaffold gap size wrong estimation (local) 3890131 3949564 162235 222341 CM091763.1 scf7180000184224 98.33 True fake: scaffold gap size wrong estimation (local) 3950334 3977951 222995 250627 CM091763.1 scf7180000184224 99.66 True fake: scaffold gap size wrong estimation (local) 3978310 3998489 250720 270792 CM091763.1 scf7180000184224 99.21 True fake: scaffold gap size wrong estimation (local) 3999311 4023503 271329 295569 CM091763.1 scf7180000184224 99.71 True fake: scaffold gap size wrong estimation (local) 4024160 4026135 296038 297952 CM091763.1 scf7180000184224 96.0 True fake: scaffold gap size wrong estimation (local) 4027273 4028604 299035 300376 CM091763.1 scf7180000184224 97.11 True fake: scaffold gap size wrong estimation (local) 4028777 4036188 300512 307845 CM091763.1 scf7180000184224 98.59 True fake: scaffold gap size wrong estimation (local) 4036763 4051982 308107 323357 CM091763.1 scf7180000184224 98.87 True fake: scaffold gap size wrong estimation (local) 4053100 4057898 323923 328708 CM091763.1 scf7180000184224 99.06 True fake: scaffold gap size wrong estimation (local) 4058582 4081769 329047 351783 CM091763.1 scf7180000184224 97.37 True fake: scaffold gap size wrong estimation (local) 4082706 4095666 352303 365358 CM091763.1 scf7180000184224 98.76 True fake: scaffold gap size wrong estimation (local) 4095756 4108776 365711 379099 CM091763.1 scf7180000184224 97.23 True fake: scaffold gap size wrong estimation (local) 4109492 4207783 379526 477894 CM091763.1 scf7180000184224 99.29 True fake: scaffold gap size wrong estimation (local) 4208719 4228559 478393 498272 CM091763.1 scf7180000184224 99.06 True fake: scaffold gap size wrong estimation (local) 4228972 4298482 498375 567931 CM091763.1 scf7180000184224 99.16 True fake: scaffold gap size wrong estimation (local) 4298366 4402817 568408 672431 CM091763.1 scf7180000184224 98.29 True fake: scaffold gap size wrong estimation (local) 4402934 4559670 672534 826756 CM091763.1 scf7180000184224 97.81 True fake: scaffold gap size wrong estimation (local) 4560497 4715259 827417 981958 CM091763.1 scf7180000184224 99.31 True fake: scaffold gap size wrong estimation (local) 4716276 4718299 982987 985010 CM091763.1 scf7180000184224 99.65 True indel: indel (<= 5bp) 4718301 4719885 985011 986595 CM091763.1 scf7180000184224 99.5 True local misassembly 4722580 4725053 986596 989069 CM091763.1 scf7180000184224 98.99 True indel: indel (<= 5bp) 4725055 4726354 989070 990369 CM091763.1 scf7180000184224 99.85 True indel: indel (<= 5bp) 4726356 4728155 990370 992169 CM091763.1 scf7180000184224 99.89 True indel: indel (<= 5bp) 4728158 4731293 992170 995305 CM091763.1 scf7180000184224 99.87 True indel: indel (<= 5bp) 4731294 4731958 995307 995971 CM091763.1 scf7180000184224 100.0 True indel: indel (<= 5bp) 4731960 4741980 995972 1005992 CM091763.1 scf7180000184224 99.93 True indel: indel (<= 5bp) 4741982 4745106 1005993 1009117 CM091763.1 scf7180000184224 99.87 True indel: indel (<= 5bp) 4745112 4748876 1009118 1012882 CM091763.1 scf7180000184224 99.97 True fake: scaffold gap size wrong estimation (local) 4749113 4751267 1013081 1015235 CM091763.1 scf7180000184224 99.86 True fake: scaffold gap size wrong estimation (local) 4752051 4828897 1015749 1092992 CM091763.1 scf7180000184224 99.39 True fake: scaffold gap size wrong estimation (local) 4829307 4831578 1093123 1095394 CM091763.1 scf7180000184224 99.91 True indel: indel (<= 5bp) 4831620 4899026 1095435 1162451 CM091763.1 scf7180000184224 99.23 True fake: scaffold gap size wrong estimation (local) 4899156 4922235 1162556 1185241 CM091763.1 scf7180000184224 97.39 True CONTIG scf7180000184224 1185241 correct 15784256 15786838 2612 1 CM091757.1 scf7180000184225 99.58 True translocation, scaffold gap is present 6944137 6997180 2676 55314 CM091767.1 scf7180000184225 99.0 True indel: indel (> 5bp) 6997205 7009015 55347 67157 CM091767.1 scf7180000184225 99.93 True fake: scaffold gap size wrong estimation (local) 7009728 7041102 67311 98677 CM091767.1 scf7180000184225 99.88 True fake: scaffold gap size wrong estimation (local) 7041159 7075537 98903 132871 CM091767.1 scf7180000184225 98.54 True indel: indel (<= 5bp) 7075555 7083972 132890 141327 CM091767.1 scf7180000184225 99.41 True fake: scaffold gap size wrong estimation (local) 7084835 7100710 141772 157654 CM091767.1 scf7180000184225 98.26 True fake: not a misassembly (possible transposable element) 19385453 19386313 157736 158597 CM091751.1 scf7180000184225 99.1 True fake: not a misassembly (possible transposable element) 7102255 7106881 158598 163228 CM091767.1 scf7180000184225 99.35 True fake: scaffold gap size wrong estimation (local) 7107633 7121175 164211 177408 CM091767.1 scf7180000184225 96.82 True fake: scaffold gap size wrong estimation (local) 7121453 7134717 177657 190906 CM091767.1 scf7180000184225 98.71 True local misassembly 7135396 7154590 191031 210091 CM091767.1 scf7180000184225 98.63 True fake: scaffold gap size wrong estimation (local) 7155359 7156934 210479 212088 CM091767.1 scf7180000184225 98.29 True fake: scaffold gap size wrong estimation (local) 7157139 7157695 212197 212753 CM091767.1 scf7180000184225 98.03 True fake: scaffold gap size wrong estimation (local) 7158138 7164196 212998 219059 CM091767.1 scf7180000184225 98.67 True fake: scaffold gap size wrong estimation (local) 7164320 7165256 219172 220108 CM091767.1 scf7180000184225 99.89 True indel: indel (> 5bp) 7165357 7166841 220172 221687 CM091767.1 scf7180000184225 96.71 True local misassembly 7167203 7173986 221917 228647 CM091767.1 scf7180000184225 96.52 True fake: scaffold gap size wrong estimation (local) 7174804 7181678 229304 236184 CM091767.1 scf7180000184225 99.4 True fake: scaffold gap size wrong estimation (local) 7181910 7184042 236267 238402 CM091767.1 scf7180000184225 98.92 True fake: scaffold gap size wrong estimation (local) 7185239 7191272 238971 244767 CM091767.1 scf7180000184225 95.11 True fake: scaffold gap size wrong estimation (local) 7191435 7192112 244864 245541 CM091767.1 scf7180000184225 99.26 True indel: indel (<= 5bp) 7192113 7192982 245543 246412 CM091767.1 scf7180000184225 99.66 True indel: indel (<= 5bp) 7192983 7193556 246414 246987 CM091767.1 scf7180000184225 99.83 True indel: indel (<= 5bp) 7193559 7195189 246988 248618 CM091767.1 scf7180000184225 99.94 True fake: scaffold gap size wrong estimation (local) 7196874 7198082 250339 251547 CM091767.1 scf7180000184225 99.59 True local misassembly 7198473 7201435 251548 254510 CM091767.1 scf7180000184225 98.55 True fake: scaffold gap size wrong estimation (local) 7201436 7203597 254987 257148 CM091767.1 scf7180000184225 97.27 True fake: scaffold gap size wrong estimation (local) 7203850 7206556 257245 259909 CM091767.1 scf7180000184225 97.7 True fake: scaffold gap size wrong estimation (local) 7207124 7218001 260068 270816 CM091767.1 scf7180000184225 97.89 True fake: scaffold gap size wrong estimation (local) 7218171 7223920 270992 276745 CM091767.1 scf7180000184225 98.96 True fake: scaffold gap size wrong estimation (local) 7224352 7230290 277013 282999 CM091767.1 scf7180000184225 99.15 True fake: scaffold gap size wrong estimation (local) 7230522 7232689 283072 285248 CM091767.1 scf7180000184225 98.94 True fake: scaffold gap size wrong estimation (local) 7233597 7249062 285970 301275 CM091767.1 scf7180000184225 97.78 True fake: scaffold gap size wrong estimation (local) 7249152 7254208 301333 306441 CM091767.1 scf7180000184225 98.31 True fake: scaffold gap size wrong estimation (local) 7254885 7256761 306825 308703 CM091767.1 scf7180000184225 99.31 True fake: scaffold gap size wrong estimation (local) 7258749 7259961 310794 312006 CM091767.1 scf7180000184225 99.42 True fake: scaffold gap size wrong estimation (local) 7261385 7262055 313082 313752 CM091767.1 scf7180000184225 98.66 True indel: indel (<= 5bp) 7262060 7263239 313758 314937 CM091767.1 scf7180000184225 99.41 True local misassembly 7264247 7264809 314938 315500 CM091767.1 scf7180000184225 96.45 True fake: scaffold gap size wrong estimation (local) 7264854 7266936 315562 317644 CM091767.1 scf7180000184225 99.23 True fake: scaffold gap size wrong estimation (local) 7267285 7269063 317921 319723 CM091767.1 scf7180000184225 98.32 True fake: scaffold gap size wrong estimation (local) 7269288 7271986 319923 322668 CM091767.1 scf7180000184225 97.62 True fake: scaffold gap size wrong estimation (local) 7272681 7273988 323184 324492 CM091767.1 scf7180000184225 98.7 True fake: scaffold gap size wrong estimation (local) 7274657 7276818 324937 327097 CM091767.1 scf7180000184225 99.63 True fake: scaffold gap size wrong estimation (local) 7276923 7279007 327174 329260 CM091767.1 scf7180000184225 99.38 True fake: scaffold gap size wrong estimation (local) 7279978 7281488 329905 331420 CM091767.1 scf7180000184225 98.75 True fake: scaffold gap size wrong estimation (local) 7282759 7284628 332448 334320 CM091767.1 scf7180000184225 99.31 True fake: scaffold gap size wrong estimation (local) 7285256 7288412 334902 338062 CM091767.1 scf7180000184225 98.96 True fake: scaffold gap size wrong estimation (local) 7289233 7290172 338624 339564 CM091767.1 scf7180000184225 98.41 True fake: scaffold gap size wrong estimation (local) 7290247 7291260 339633 340653 CM091767.1 scf7180000184225 98.53 True fake: scaffold gap size wrong estimation (local) 7291837 7293718 340980 342862 CM091767.1 scf7180000184225 99.73 True fake: scaffold gap size wrong estimation (local) 7294010 7295144 343222 344358 CM091767.1 scf7180000184225 99.47 True fake: scaffold gap size wrong estimation (local) 7295911 7296682 345146 345917 CM091767.1 scf7180000184225 98.06 True fake: scaffold gap size wrong estimation (local) 7296881 7300277 346134 349528 CM091767.1 scf7180000184225 98.54 True fake: scaffold gap size wrong estimation (local) 7301588 7303800 349959 352169 CM091767.1 scf7180000184225 98.87 True fake: scaffold gap size wrong estimation (local) 7304123 7311675 352344 359931 CM091767.1 scf7180000184225 98.99 True indel: indel (> 5bp) 7311814 7341626 360078 389938 CM091767.1 scf7180000184225 99.14 True fake: scaffold gap size wrong estimation (local) 7341691 7374451 390150 422924 CM091767.1 scf7180000184225 99.62 True indel: indel (<= 5bp) 7374497 7381803 422975 430279 CM091767.1 scf7180000184225 99.25 True fake: scaffold gap size wrong estimation (local) 7384209 7385584 432652 434028 CM091767.1 scf7180000184225 99.49 True fake: scaffold gap size wrong estimation (local) 7385794 7387565 434189 435960 CM091767.1 scf7180000184225 99.83 True fake: scaffold gap size wrong estimation (local) 7388986 7392789 436682 440489 CM091767.1 scf7180000184225 99.68 True fake: scaffold gap size wrong estimation (local) 7393730 7394365 441209 441844 CM091767.1 scf7180000184225 100.0 True fake: scaffold gap size wrong estimation (local) 7395654 7396185 442464 442995 CM091767.1 scf7180000184225 99.81 True indel: indel (<= 5bp) 7396189 7397816 442996 444623 CM091767.1 scf7180000184225 100.0 True fake: scaffold gap size wrong estimation (local) 7397983 7405878 444737 452636 CM091767.1 scf7180000184225 99.82 True fake: scaffold gap size wrong estimation (local) 7406090 7448579 452832 494486 CM091767.1 scf7180000184225 97.72 True indel: indel (<= 5bp) 7448635 7460214 494547 506150 CM091767.1 scf7180000184225 99.71 True fake: scaffold gap size wrong estimation (local) 7460456 7501153 506406 547054 CM091767.1 scf7180000184225 99.78 True fake: scaffold gap size wrong estimation (local) 7502154 7505965 547244 551055 CM091767.1 scf7180000184225 99.42 True fake: scaffold gap size wrong estimation (local) 7506179 7513904 551142 558862 CM091767.1 scf7180000184225 99.84 True fake: scaffold gap size wrong estimation (local) 7514013 7530667 558946 575373 CM091767.1 scf7180000184225 98.51 True fake: scaffold gap size wrong estimation (local) 7531139 7537864 575505 582230 CM091767.1 scf7180000184225 99.96 True fake: scaffold gap size wrong estimation (local) 7538020 7544743 582367 589108 CM091767.1 scf7180000184225 98.89 True fake: scaffold gap size wrong estimation (local) 7545116 7546746 589483 591113 CM091767.1 scf7180000184225 99.94 True fake: scaffold gap size wrong estimation (local) 7549200 7553979 591666 596445 CM091767.1 scf7180000184225 99.9 True fake: not a misassembly (possible transposable element) 2671692 2673788 596469 598570 CM091754.1 scf7180000184225 99.14 True fake: not a misassembly (possible transposable element) 7554798 7556403 598571 600173 CM091767.1 scf7180000184225 99.76 True fake: not a misassembly (possible transposable element) 15832240 15832810 600782 600212 CM091757.1 scf7180000184225 100.0 True fake: not a misassembly (possible transposable element) 7560853 7571826 600876 611847 CM091767.1 scf7180000184225 99.88 True fake: not a misassembly (possible transposable element) 3704186 3704754 612417 611848 CM091765.1 scf7180000184225 99.3 True fake: not a misassembly (possible transposable element) 7571705 7578997 612438 619793 CM091767.1 scf7180000184225 99.51 True indel: indel (> 5bp) 7579138 7580126 619918 620906 CM091767.1 scf7180000184225 99.9 True local misassembly 7581143 7581852 620907 621616 CM091767.1 scf7180000184225 96.34 True translocation, scaffold gap is present 11408091 11408868 622106 622883 CM091765.1 scf7180000184225 99.49 True fake: scaffold gap size wrong estimation (local) 11409642 11410451 624022 624831 CM091765.1 scf7180000184225 99.63 True translocation, scaffold gap is present 15776825 15780668 630436 626514 CM091757.1 scf7180000184225 98.87 True translocation, scaffold gap is present 11400221 11401543 630530 631846 CM091765.1 scf7180000184225 96.92 True translocation, scaffold gap is present 17700577 17701076 631938 632437 CM091751.1 scf7180000184225 100.0 True translocation 15773433 15777037 636044 632438 CM091757.1 scf7180000184225 99.42 True translocation, scaffold gap is present 11402603 11404487 636404 638280 CM091765.1 scf7180000184225 98.33 True fake: scaffold gap size wrong estimation (local) 11405048 11406005 638751 639702 CM091765.1 scf7180000184225 96.35 True indel: indel (<= 5bp) 11406376 11407073 640070 640765 CM091765.1 scf7180000184225 98.42 True translocation, scaffold gap is present 15770387 15770959 641695 641130 CM091757.1 scf7180000184225 98.73 True fake: scaffold gap size wrong estimation (local) 15765055 15769361 646922 642619 CM091757.1 scf7180000184225 99.88 True CONTIG scf7180000184225 646935 misassembled 2593592 2598605 1 5003 CM091754.1 scf7180000184226 98.25 True fake: scaffold gap size wrong estimation (local) 2599369 2626924 5505 33105 CM091754.1 scf7180000184226 99.55 True fake: scaffold gap size wrong estimation (local) 2627788 2636393 33660 42296 CM091754.1 scf7180000184226 99.36 True translocation 8954293 8955950 42297 43965 CM091763.1 scf7180000184226 98.5 True translocation 13962228 13963712 45451 43966 CM091758.1 scf7180000184226 99.07 True fake: scaffold gap size wrong estimation (local) 13931121 13962068 76163 45720 CM091758.1 scf7180000184226 97.5 True fake: scaffold gap size wrong estimation (local) 13908690 13930200 98155 76956 CM091758.1 scf7180000184226 97.47 True indel: indel (> 5bp) 13895498 13908613 111443 98218 CM091758.1 scf7180000184226 98.05 True fake: scaffold gap size wrong estimation (local) 13883914 13895362 122763 111537 CM091758.1 scf7180000184226 95.71 True fake: scaffold gap size wrong estimation (local) 13872270 13883140 133804 122948 CM091758.1 scf7180000184226 99.39 True fake: scaffold gap size wrong estimation (local) 13870964 13871931 135067 134100 CM091758.1 scf7180000184226 99.9 True indel: indel (<= 5bp) 13870157 13870741 135879 135295 CM091758.1 scf7180000184226 98.97 True indel: indel (<= 5bp) 13869194 13870156 136843 135881 CM091758.1 scf7180000184226 99.17 True fake: scaffold gap size wrong estimation (local) 13866845 13868419 139214 137640 CM091758.1 scf7180000184226 100.0 True fake: scaffold gap size wrong estimation (local) 13864609 13866231 141727 140105 CM091758.1 scf7180000184226 99.38 True fake: scaffold gap size wrong estimation (local) 13854252 13864056 151917 142133 CM091758.1 scf7180000184226 99.1 True fake: scaffold gap size wrong estimation (local) 13849863 13854129 156310 152055 CM091758.1 scf7180000184226 98.88 True translocation 743919 746214 156311 158704 CM091755.1 scf7180000184226 96.13 True fake: scaffold gap size wrong estimation (local) 747755 779046 159270 190221 CM091755.1 scf7180000184226 98.53 True fake: scaffold gap size wrong estimation (local) 779147 792417 190311 203578 CM091755.1 scf7180000184226 99.95 True fake: scaffold gap size wrong estimation (local) 793085 795838 204258 207011 CM091755.1 scf7180000184226 99.2 True indel: indel (<= 5bp) 795840 797905 207012 209077 CM091755.1 scf7180000184226 100.0 True translocation 10850916 10949179 209078 308007 CM091753.1 scf7180000184226 98.5 True fake: scaffold gap size wrong estimation (local) 10949568 10959529 308148 318195 CM091753.1 scf7180000184226 98.8 True fake: scaffold gap size wrong estimation (local) 10959719 10964573 318364 323221 CM091753.1 scf7180000184226 99.67 True fake: scaffold gap size wrong estimation (local) 10964862 10967373 323324 325838 CM091753.1 scf7180000184226 99.4 True fake: scaffold gap size wrong estimation (local) 10967512 10971748 325933 330039 CM091753.1 scf7180000184226 95.7 True fake: scaffold gap size wrong estimation (local) 10973396 10986620 331386 344447 CM091753.1 scf7180000184226 98.26 True fake: scaffold gap size wrong estimation (local) 10987755 10988674 345615 346534 CM091753.1 scf7180000184226 99.89 True fake: scaffold gap size wrong estimation (local) 10989760 10990533 347609 348382 CM091753.1 scf7180000184226 99.74 True indel: indel (> 5bp) 10990638 10991692 348449 349503 CM091753.1 scf7180000184226 99.72 True indel: indel (<= 5bp) 10991741 10996735 349551 354512 CM091753.1 scf7180000184226 97.97 True fake: scaffold gap size wrong estimation (local) 10996986 11004805 354689 362516 CM091753.1 scf7180000184226 99.23 True fake: scaffold gap size wrong estimation (local) 11005013 11023297 362686 381013 CM091753.1 scf7180000184226 99.38 True fake: scaffold gap size wrong estimation (local) 11023487 11062285 381172 420058 CM091753.1 scf7180000184226 99.28 True fake: scaffold gap size wrong estimation (local) 11062439 11067216 420167 424929 CM091753.1 scf7180000184226 99.02 True fake: scaffold gap size wrong estimation (local) 11067348 11068599 425021 426273 CM091753.1 scf7180000184226 99.6 True fake: scaffold gap size wrong estimation (local) 11068821 11097491 426471 455192 CM091753.1 scf7180000184226 99.33 True fake: scaffold gap size wrong estimation (local) 11097697 11137033 455386 494739 CM091753.1 scf7180000184226 99.57 True indel: indel (<= 5bp) 11137171 11456344 494879 813946 CM091753.1 scf7180000184226 99.65 True fake: scaffold gap size wrong estimation (local) 11457188 11575609 814642 932987 CM091753.1 scf7180000184226 99.59 True fake: scaffold gap size wrong estimation (local) 11575717 11594759 933055 952089 CM091753.1 scf7180000184226 99.79 True fake: scaffold gap size wrong estimation (local) 11595294 11624139 952477 981310 CM091753.1 scf7180000184226 99.79 True fake: scaffold gap size wrong estimation (local) 11626102 11649151 981672 1004322 CM091753.1 scf7180000184226 98.09 True fake: scaffold gap size wrong estimation (local) 11649212 11665237 1004791 1020813 CM091753.1 scf7180000184226 99.44 True fake: scaffold gap size wrong estimation (local) 11665717 11673808 1020952 1029067 CM091753.1 scf7180000184226 99.27 True CONTIG scf7180000184226 1029067 misassembled 7669576 7713934 34 44388 CM091760.1 scf7180000184227 99.89 True fake: scaffold gap size wrong estimation (local) 7714045 7731545 44488 62027 CM091760.1 scf7180000184227 99.5 True fake: scaffold gap size wrong estimation (local) 7731732 7843859 62309 174307 CM091760.1 scf7180000184227 99.32 True indel: indel (> 5bp) 7843906 7890828 174407 221112 CM091760.1 scf7180000184227 99.09 True fake: scaffold gap size wrong estimation (local) 7892783 7930313 222391 259562 CM091760.1 scf7180000184227 98.55 True fake: scaffold gap size wrong estimation (local) 7930540 8057342 259764 386589 CM091760.1 scf7180000184227 99.51 True fake: scaffold gap size wrong estimation (local) 8057701 8144584 387192 474022 CM091760.1 scf7180000184227 99.38 True fake: scaffold gap size wrong estimation (local) 8144714 8216212 474130 545626 CM091760.1 scf7180000184227 99.25 True indel: indel (<= 5bp) 8216218 8429261 545634 758618 CM091760.1 scf7180000184227 99.02 True fake: scaffold gap size wrong estimation (local) 8429551 8430664 758742 759867 CM091760.1 scf7180000184227 99.73 True fake: scaffold gap size wrong estimation (local) 8432513 8437589 760724 765785 CM091760.1 scf7180000184227 99.1 True fake: scaffold gap size wrong estimation (local) 8438164 8485461 766182 813527 CM091760.1 scf7180000184227 99.54 True fake: scaffold gap size wrong estimation (local) 8485687 8741911 813724 1069584 CM091760.1 scf7180000184227 99.15 True fake: scaffold gap size wrong estimation (local) 8742154 8845867 1069801 1173323 CM091760.1 scf7180000184227 99.12 True indel: indel (> 5bp) 8845963 8901500 1173492 1228914 CM091760.1 scf7180000184227 99.05 True indel: stretch of mismatches 8901501 8962521 1228915 1289827 CM091760.1 scf7180000184227 99.06 True fake: scaffold gap size wrong estimation (local) 8962775 8979585 1290072 1306908 CM091760.1 scf7180000184227 99.47 True indel: indel (> 5bp) 8979727 9002795 1307058 1330146 CM091760.1 scf7180000184227 99.19 True fake: scaffold gap size wrong estimation (local) 9003044 9057147 1330859 1385050 CM091760.1 scf7180000184227 99.24 True fake: scaffold gap size wrong estimation (local) 9057796 9118260 1385260 1445810 CM091760.1 scf7180000184227 98.03 True indel: indel (> 5bp) 9118624 9121959 1446182 1449530 CM091760.1 scf7180000184227 95.9 True relocation, scaffold gap is present, inconsistency = -6688324 2435989 2436686 1451884 1452581 CM091760.1 scf7180000184227 99.86 True CONTIG scf7180000184227 1452581 misassembled 4471291 4577652 16 105041 CM091753.1 scf7180000184228 98.2 True fake: scaffold gap size wrong estimation (local) 4578141 4628865 105138 155923 CM091753.1 scf7180000184228 99.37 True fake: scaffold gap size wrong estimation (local) 4629612 4672625 156719 199733 CM091753.1 scf7180000184228 99.55 True local misassembly 4673268 4791372 200365 318321 CM091753.1 scf7180000184228 99.33 True fake: scaffold gap size wrong estimation (local) 4791517 4792403 318446 319334 CM091753.1 scf7180000184228 99.66 True indel: indel (> 5bp) 4792450 4801701 319395 328613 CM091753.1 scf7180000184228 99.28 True fake: scaffold gap size wrong estimation (local) 4801781 4956790 328699 483712 CM091753.1 scf7180000184228 97.97 True fake: scaffold gap size wrong estimation (local) 4956945 4967035 483866 494004 CM091753.1 scf7180000184228 99.37 True fake: scaffold gap size wrong estimation (local) 4967350 5030730 494172 558641 CM091753.1 scf7180000184228 97.51 True fake: scaffold gap size wrong estimation (local) 5031224 5034144 558841 561756 CM091753.1 scf7180000184228 98.9 True fake: scaffold gap size wrong estimation (local) 5034945 5036191 562351 563601 CM091753.1 scf7180000184228 97.22 True fake: scaffold gap size wrong estimation (local) 5036550 5037590 563691 564731 CM091753.1 scf7180000184228 99.14 True fake: scaffold gap size wrong estimation (local) 5038326 5086436 565245 612909 CM091753.1 scf7180000184228 98.07 True fake: scaffold gap size wrong estimation (local) 5086526 5122660 612997 649159 CM091753.1 scf7180000184228 99.11 True relocation, inconsistency = -1159759 3962902 3966248 649160 652505 CM091753.1 scf7180000184228 99.91 True fake: scaffold gap size wrong estimation (local) 3967761 3968529 653279 654047 CM091753.1 scf7180000184228 100.0 True indel: indel (<= 5bp) 3968683 3969625 654199 655141 CM091753.1 scf7180000184228 98.09 True fake: scaffold gap size wrong estimation (local) 3970517 3981009 655634 666104 CM091753.1 scf7180000184228 99.53 True fake: scaffold gap size wrong estimation (local) 3981568 3983331 666629 668391 CM091753.1 scf7180000184228 99.72 True fake: scaffold gap size wrong estimation (local) 3984589 3986543 669226 671180 CM091753.1 scf7180000184228 99.9 True fake: scaffold gap size wrong estimation (local) 3987758 3988638 671783 672663 CM091753.1 scf7180000184228 99.89 True fake: scaffold gap size wrong estimation (local) 3988802 3991590 673050 675838 CM091753.1 scf7180000184228 99.75 True fake: scaffold gap size wrong estimation (local) 3991657 4045617 675921 730248 CM091753.1 scf7180000184228 98.61 True indel: indel (> 5bp) 4045650 4059977 730291 744651 CM091753.1 scf7180000184228 99.02 True fake: scaffold gap size wrong estimation (local) 4060166 4062230 744822 746891 CM091753.1 scf7180000184228 99.32 True fake: scaffold gap size wrong estimation (local) 4063896 4143925 747895 827654 CM091753.1 scf7180000184228 99.49 True CONTIG scf7180000184228 827654 misassembled 1426477 1495223 68679 257 CM091760.1 scf7180000184229 99.15 True fake: scaffold gap size wrong estimation (local) 1374239 1425775 120505 68936 CM091760.1 scf7180000184229 99.62 True fake: scaffold gap size wrong estimation (local) 1362132 1373365 132324 121096 CM091760.1 scf7180000184229 99.77 True fake: scaffold gap size wrong estimation (local) 1196811 1361944 297187 132458 CM091760.1 scf7180000184229 99.39 True indel: indel (<= 5bp) 1120699 1196718 373156 297285 CM091760.1 scf7180000184229 99.16 True fake: scaffold gap size wrong estimation (local) 1058634 1120157 435105 373440 CM091760.1 scf7180000184229 99.42 True fake: scaffold gap size wrong estimation (local) 1056153 1058174 437451 435431 CM091760.1 scf7180000184229 99.75 True fake: scaffold gap size wrong estimation (local) 964238 1055281 528701 437897 CM091760.1 scf7180000184229 99.39 True fake: scaffold gap size wrong estimation (local) 932277 964046 560564 528841 CM091760.1 scf7180000184229 99.77 True fake: scaffold gap size wrong estimation (local) 923889 932179 568945 560656 CM091760.1 scf7180000184229 99.93 True fake: scaffold gap size wrong estimation (local) 912065 923739 580446 569096 CM091760.1 scf7180000184229 96.65 True fake: scaffold gap size wrong estimation (local) 903802 911502 588290 580590 CM091760.1 scf7180000184229 99.94 True fake: scaffold gap size wrong estimation (local) 901476 903583 590691 588586 CM091760.1 scf7180000184229 99.72 True fake: scaffold gap size wrong estimation (local) 876937 900673 614826 591240 CM091760.1 scf7180000184229 99.08 True fake: scaffold gap size wrong estimation (local) 857601 876758 634156 614940 CM091760.1 scf7180000184229 99.58 True fake: scaffold gap size wrong estimation (local) 780774 857087 711025 634255 CM091760.1 scf7180000184229 99.16 True fake: scaffold gap size wrong estimation (local) 776775 780106 715190 711742 CM091760.1 scf7180000184229 96.52 True fake: scaffold gap size wrong estimation (local) 753221 776528 738797 715455 CM091760.1 scf7180000184229 99.39 True fake: scaffold gap size wrong estimation (local) 751234 752453 741012 739787 CM091760.1 scf7180000184229 99.58 True translocation, scaffold gap is present 3085703 3093131 741897 749331 CM091768.1 scf7180000184229 99.14 True indel: indel (> 5bp) 3093208 3095323 749416 751534 CM091768.1 scf7180000184229 98.96 True CONTIG scf7180000184229 751534 misassembled 75501 76327 856 1 CM091754.1 scf7180000184230 98.37 True relocation, scaffold gap is present, inconsistency = -1412375 1471068 1487825 17266 907 CM091754.1 scf7180000184230 96.68 True fake: scaffold gap size wrong estimation (local) 1469508 1470895 18806 17420 CM091754.1 scf7180000184230 99.64 True fake: scaffold gap size wrong estimation (local) 1467957 1469091 20152 19017 CM091754.1 scf7180000184230 98.59 True fake: scaffold gap size wrong estimation (local) 1465121 1467867 22966 20220 CM091754.1 scf7180000184230 99.45 True indel: indel (> 5bp) 1448216 1464937 39646 23083 CM091754.1 scf7180000184230 98.41 True fake: scaffold gap size wrong estimation (local) 1444058 1447947 43684 39793 CM091754.1 scf7180000184230 99.56 True fake: scaffold gap size wrong estimation (local) 1431410 1443231 56035 44227 CM091754.1 scf7180000184230 99.72 True indel: indel (<= 5bp) 1429533 1431331 57919 56111 CM091754.1 scf7180000184230 97.91 True indel: indel (> 5bp) 1419369 1429482 68097 57981 CM091754.1 scf7180000184230 98.98 True fake: scaffold gap size wrong estimation (local) 1413558 1417296 73004 69250 CM091754.1 scf7180000184230 98.3 True fake: scaffold gap size wrong estimation (local) 1409032 1412670 76873 73234 CM091754.1 scf7180000184230 98.79 True fake: scaffold gap size wrong estimation (local) 1407560 1408308 78216 77468 CM091754.1 scf7180000184230 99.07 True local misassembly 1406139 1406956 79637 78820 CM091754.1 scf7180000184230 99.27 True local misassembly 1404431 1405566 80922 79787 CM091754.1 scf7180000184230 99.47 True fake: scaffold gap size wrong estimation (local) 1402413 1403131 82685 81967 CM091754.1 scf7180000184230 99.86 True fake: scaffold gap size wrong estimation (local) 1400992 1401736 83899 83152 CM091754.1 scf7180000184230 97.87 True fake: scaffold gap size wrong estimation (local) 1398978 1399521 86022 85479 CM091754.1 scf7180000184230 99.26 True fake: scaffold gap size wrong estimation (local) 1397668 1398644 87372 86396 CM091754.1 scf7180000184230 99.8 True fake: scaffold gap size wrong estimation (local) 1395494 1396673 88650 87471 CM091754.1 scf7180000184230 99.75 True local misassembly 1391800 1394847 92373 89326 CM091754.1 scf7180000184230 99.31 True indel: indel (> 5bp) 1390135 1391474 94045 92706 CM091754.1 scf7180000184230 99.78 True indel: indel (<= 5bp) 1389364 1390005 94818 94177 CM091754.1 scf7180000184230 99.69 True indel: indel (<= 5bp) 1388391 1389362 95790 94819 CM091754.1 scf7180000184230 99.18 True local misassembly 1386679 1387727 97431 96383 CM091754.1 scf7180000184230 98.95 True indel: indel (<= 5bp) 1386163 1386675 97944 97432 CM091754.1 scf7180000184230 99.61 True indel: indel (<= 5bp) 1385219 1385985 98887 98121 CM091754.1 scf7180000184230 99.22 True local misassembly 1384055 1384602 100055 99508 CM091754.1 scf7180000184230 99.64 True indel: indel (<= 5bp) 1383531 1384054 100580 100057 CM091754.1 scf7180000184230 99.62 True indel: indel (<= 5bp) 1382856 1383530 101256 100582 CM091754.1 scf7180000184230 99.7 True local misassembly 1381305 1382105 102808 102008 CM091754.1 scf7180000184230 99.38 True indel: indel (<= 5bp) 1379871 1381304 104243 102810 CM091754.1 scf7180000184230 99.93 True indel: indel (<= 5bp) 1379337 1379869 104776 104244 CM091754.1 scf7180000184230 99.62 True fake: scaffold gap size wrong estimation (local) 1374422 1378751 109575 105243 CM091754.1 scf7180000184230 99.42 True fake: scaffold gap size wrong estimation (local) 1370967 1374302 113033 109697 CM091754.1 scf7180000184230 98.04 True fake: scaffold gap size wrong estimation (local) 1368800 1370226 115066 113637 CM091754.1 scf7180000184230 98.26 True fake: scaffold gap size wrong estimation (local) 1365580 1366943 118289 116926 CM091754.1 scf7180000184230 99.63 True fake: scaffold gap size wrong estimation (local) 1362069 1363938 121067 119197 CM091754.1 scf7180000184230 99.52 True fake: scaffold gap size wrong estimation (local) 1358851 1361822 124302 121326 CM091754.1 scf7180000184230 99.09 True fake: scaffold gap size wrong estimation (local) 1356167 1358670 126950 124444 CM091754.1 scf7180000184230 98.45 True fake: scaffold gap size wrong estimation (local) 1352781 1355338 129875 127318 CM091754.1 scf7180000184230 98.48 True local misassembly 1352078 1352619 130417 129876 CM091754.1 scf7180000184230 99.45 True indel: indel (> 5bp) 1351207 1351811 131295 130691 CM091754.1 scf7180000184230 98.35 True indel: indel (> 5bp) 1350488 1351206 132025 131307 CM091754.1 scf7180000184230 99.72 True fake: scaffold gap size wrong estimation (local) 1341982 1349148 140425 133236 CM091754.1 scf7180000184230 99.07 True fake: scaffold gap size wrong estimation (local) 1340196 1340912 142159 141444 CM091754.1 scf7180000184230 98.89 True fake: scaffold gap size wrong estimation (local) 1338074 1339153 143970 142891 CM091754.1 scf7180000184230 99.35 True relocation, scaffold gap is present, inconsistency = 28546 1297448 1307133 156071 146365 CM091754.1 scf7180000184230 99.35 True fake: scaffold gap size wrong estimation (local) 1294458 1296800 158796 156447 CM091754.1 scf7180000184230 98.56 True indel: indel (> 5bp) 1278362 1294329 174940 158968 CM091754.1 scf7180000184230 99.19 True fake: scaffold gap size wrong estimation (local) 1276982 1277930 176309 175361 CM091754.1 scf7180000184230 99.37 True local misassembly 1275688 1276324 177358 176722 CM091754.1 scf7180000184230 99.84 True fake: scaffold gap size wrong estimation (local) 1274276 1275485 178726 177517 CM091754.1 scf7180000184230 99.26 True local misassembly 1273373 1274002 179490 178861 CM091754.1 scf7180000184230 99.68 True fake: scaffold gap size wrong estimation (local) 1269481 1272547 183354 180282 CM091754.1 scf7180000184230 99.06 True fake: scaffold gap size wrong estimation (local) 1268193 1268913 184613 183893 CM091754.1 scf7180000184230 99.58 True fake: scaffold gap size wrong estimation (local) 1266682 1267805 185930 184807 CM091754.1 scf7180000184230 99.56 True translocation 8919854 8920814 185931 186882 CM091767.1 scf7180000184230 98.41 True translocation 15960845 15961460 187530 186915 CM091757.1 scf7180000184230 100.0 True translocation, scaffold gap is present 1263752 1266142 189928 187551 CM091754.1 scf7180000184230 98.08 True fake: scaffold gap size wrong estimation (local) 1262662 1263376 191115 190400 CM091754.1 scf7180000184230 98.74 True fake: scaffold gap size wrong estimation (local) 1261587 1262402 192183 191368 CM091754.1 scf7180000184230 99.39 True fake: scaffold gap size wrong estimation (local) 1236973 1261429 216296 192313 CM091754.1 scf7180000184230 96.96 True indel: indel (> 5bp) 1156161 1236953 295802 216306 CM091754.1 scf7180000184230 97.79 True fake: not a misassembly (possible transposable element) 10427576 10431917 300188 295823 CM091756.1 scf7180000184230 98.22 True fake: not a misassembly (possible transposable element) 1152942 1154592 301846 300189 CM091754.1 scf7180000184230 99.08 True fake: scaffold gap size wrong estimation (local) 1144185 1152742 310798 302218 CM091754.1 scf7180000184230 99.03 True fake: scaffold gap size wrong estimation (local) 1141952 1143621 312947 311275 CM091754.1 scf7180000184230 99.7 True fake: scaffold gap size wrong estimation (local) 1129686 1141044 325005 313602 CM091754.1 scf7180000184230 98.7 True fake: scaffold gap size wrong estimation (local) 1125058 1129539 329604 325133 CM091754.1 scf7180000184230 98.44 True relocation, inconsistency = 503177 619823 621880 331659 329605 CM091754.1 scf7180000184230 97.51 True fake: scaffold gap size wrong estimation (local) 614354 619102 336943 332233 CM091754.1 scf7180000184230 98.51 True fake: scaffold gap size wrong estimation (local) 612020 612606 339226 338640 CM091754.1 scf7180000184230 98.98 True local misassembly 609750 611149 341497 340098 CM091754.1 scf7180000184230 99.64 True local misassembly 607095 608275 344157 342977 CM091754.1 scf7180000184230 99.32 True fake: scaffold gap size wrong estimation (local) 605885 606749 345414 344550 CM091754.1 scf7180000184230 99.65 True indel: indel (<= 5bp) 605250 605813 346051 345488 CM091754.1 scf7180000184230 99.47 True indel: indel (<= 5bp) 603897 605249 347405 346053 CM091754.1 scf7180000184230 99.63 True indel: indel (<= 5bp) 602169 603895 349132 347406 CM091754.1 scf7180000184230 99.77 True indel: indel (<= 5bp) 601635 602168 349667 349134 CM091754.1 scf7180000184230 99.81 True fake: scaffold gap size wrong estimation (local) 600263 601634 351492 350121 CM091754.1 scf7180000184230 95.12 True indel: indel (> 5bp) 598867 600225 352851 351493 CM091754.1 scf7180000184230 99.48 True indel: indel (<= 5bp) 598189 598866 353530 352853 CM091754.1 scf7180000184230 98.97 True fake: scaffold gap size wrong estimation (local) 594163 596707 357540 354996 CM091754.1 scf7180000184230 99.65 True indel: indel (<= 5bp) 592562 594157 359136 357541 CM091754.1 scf7180000184230 99.56 True indel: indel (<= 5bp) 590255 592557 361439 359137 CM091754.1 scf7180000184230 99.61 True indel: indel (<= 5bp) 587736 590254 363959 361441 CM091754.1 scf7180000184230 99.76 True fake: scaffold gap size wrong estimation (local) 586328 587608 365608 364328 CM091754.1 scf7180000184230 99.45 True indel: indel (<= 5bp) 585268 586327 366669 365610 CM091754.1 scf7180000184230 99.72 True local misassembly 583447 584690 368373 367130 CM091754.1 scf7180000184230 99.92 True indel: indel (<= 5bp) 582677 583446 369145 368376 CM091754.1 scf7180000184230 98.57 True indel: indel (> 5bp) 580506 582670 371310 369146 CM091754.1 scf7180000184230 99.49 True local misassembly 575327 576814 372798 371311 CM091754.1 scf7180000184230 99.66 True indel: indel (<= 5bp) 574537 575325 373587 372799 CM091754.1 scf7180000184230 99.87 True indel: indel (<= 5bp) 573854 574535 374269 373588 CM091754.1 scf7180000184230 99.56 True indel: indel (<= 5bp) 572874 573853 375250 374271 CM091754.1 scf7180000184230 99.59 True indel: indel (<= 5bp) 572134 572873 375991 375252 CM091754.1 scf7180000184230 99.73 True indel: indel (<= 5bp) 571137 571975 376990 376152 CM091754.1 scf7180000184230 99.4 True fake: scaffold gap size wrong estimation (local) 567832 569444 380241 378629 CM091754.1 scf7180000184230 99.79 True local misassembly 537126 567203 409843 380242 CM091754.1 scf7180000184230 97.56 True indel: indel (> 5bp) 520670 537075 425859 409921 CM091754.1 scf7180000184230 95.91 True local misassembly 517523 518181 428752 428094 CM091754.1 scf7180000184230 100.0 True indel: indel (> 5bp) 516871 517496 429410 428785 CM091754.1 scf7180000184230 98.88 True indel: indel (> 5bp) 514536 516371 431716 429881 CM091754.1 scf7180000184230 99.67 True local misassembly 512864 513950 432923 431837 CM091754.1 scf7180000184230 99.82 True indel: indel (<= 5bp) 511661 512862 434125 432924 CM091754.1 scf7180000184230 99.58 True local misassembly 510666 511330 434920 434256 CM091754.1 scf7180000184230 99.85 True indel: indel (<= 5bp) 510125 510665 435462 434922 CM091754.1 scf7180000184230 99.08 True local misassembly 506069 509465 439519 436123 CM091754.1 scf7180000184230 99.56 True indel: indel (> 5bp) 505165 506058 440413 439520 CM091754.1 scf7180000184230 99.22 True fake: scaffold gap size wrong estimation (local) 503051 503783 442893 442161 CM091754.1 scf7180000184230 99.05 True indel: indel (<= 5bp) 502492 503050 443453 442895 CM091754.1 scf7180000184230 99.28 True indel: indel (<= 5bp) 501331 502323 444613 443621 CM091754.1 scf7180000184230 99.7 True fake: scaffold gap size wrong estimation (local) 491095 500467 454969 445535 CM091754.1 scf7180000184230 98.42 True fake: scaffold gap size wrong estimation (local) 485802 490911 460424 455312 CM091754.1 scf7180000184230 99.24 True fake: scaffold gap size wrong estimation (local) 448283 485647 497010 460553 CM091754.1 scf7180000184230 96.34 True local misassembly 446225 446908 499080 498397 CM091754.1 scf7180000184230 99.85 True indel: indel (> 5bp) 444451 445976 500847 499322 CM091754.1 scf7180000184230 99.8 True local misassembly 441621 443564 503681 501738 CM091754.1 scf7180000184230 99.95 True local misassembly 439586 440750 504846 503682 CM091754.1 scf7180000184230 99.4 True indel: indel (<= 5bp) 439039 439584 505392 504847 CM091754.1 scf7180000184230 99.27 True indel: indel (<= 5bp) 437505 438730 506927 505702 CM091754.1 scf7180000184230 99.67 True indel: indel (> 5bp) 435984 437053 508419 507350 CM091754.1 scf7180000184230 98.88 True indel: indel (<= 5bp) 434482 435797 509917 508602 CM091754.1 scf7180000184230 99.47 True indel: indel (<= 5bp) 433601 434481 510799 509919 CM091754.1 scf7180000184230 99.55 True fake: scaffold gap size wrong estimation (local) 414889 433145 529311 511064 CM091754.1 scf7180000184230 99.09 True fake: scaffold gap size wrong estimation (local) 408527 414123 534938 529333 CM091754.1 scf7180000184230 98.85 True indel: indel (> 5bp) 406925 408484 536530 534971 CM091754.1 scf7180000184230 99.68 True fake: scaffold gap size wrong estimation (local) 403601 404100 538614 538115 CM091754.1 scf7180000184230 99.6 True indel: indel (> 5bp) 402875 403475 539348 538748 CM091754.1 scf7180000184230 99.67 True indel: indel (<= 5bp) 401866 402873 540356 539349 CM091754.1 scf7180000184230 99.11 True fake: scaffold gap size wrong estimation (local) 400530 401227 541525 540828 CM091754.1 scf7180000184230 100.0 True indel: indel (> 5bp) 399408 400168 542672 541912 CM091754.1 scf7180000184230 99.61 True local misassembly 396837 398620 545233 543450 CM091754.1 scf7180000184230 99.61 True indel: indel (<= 5bp) 395879 396836 546192 545235 CM091754.1 scf7180000184230 99.69 True local misassembly 392690 395033 549402 547059 CM091754.1 scf7180000184230 99.66 True local misassembly 391294 392073 550801 550022 CM091754.1 scf7180000184230 98.59 True local misassembly 389366 390379 551872 550859 CM091754.1 scf7180000184230 99.31 True indel: indel (> 5bp) 388121 389237 553136 552020 CM091754.1 scf7180000184230 99.64 True indel: indel (<= 5bp) 387292 387984 553963 553271 CM091754.1 scf7180000184230 99.42 True local misassembly 365544 386100 575580 555157 CM091754.1 scf7180000184230 98.3 True fake: scaffold gap size wrong estimation (local) 362092 365246 578978 575824 CM091754.1 scf7180000184230 99.37 True fake: scaffold gap size wrong estimation (local) 359635 361766 581307 579165 CM091754.1 scf7180000184230 98.58 True fake: scaffold gap size wrong estimation (local) 355823 359382 585058 581493 CM091754.1 scf7180000184230 98.99 True fake: scaffold gap size wrong estimation (local) 349663 355288 590870 585242 CM091754.1 scf7180000184230 99.38 True fake: scaffold gap size wrong estimation (local) 345871 349426 594572 591024 CM091754.1 scf7180000184230 99.27 True fake: scaffold gap size wrong estimation (local) 323500 345296 616343 594891 CM091754.1 scf7180000184230 97.34 True fake: scaffold gap size wrong estimation (local) 255189 323418 684200 616497 CM091754.1 scf7180000184230 98.12 True fake: scaffold gap size wrong estimation (local) 247735 254988 691489 684232 CM091754.1 scf7180000184230 98.82 True fake: scaffold gap size wrong estimation (local) 232218 247609 707032 691603 CM091754.1 scf7180000184230 98.85 True indel: indel (> 5bp) 207443 232185 731509 707072 CM091754.1 scf7180000184230 97.72 True indel: indel (<= 5bp) 201514 207346 737451 731605 CM091754.1 scf7180000184230 98.96 True fake: scaffold gap size wrong estimation (local) 196503 201224 742298 737555 CM091754.1 scf7180000184230 98.95 True fake: scaffold gap size wrong estimation (local) 194013 196053 744677 742614 CM091754.1 scf7180000184230 99.41 True fake: scaffold gap size wrong estimation (local) 189209 193647 749365 744928 CM091754.1 scf7180000184230 98.74 True fake: scaffold gap size wrong estimation (local) 185953 188799 752344 749495 CM091754.1 scf7180000184230 98.6 True fake: scaffold gap size wrong estimation (local) 182976 185414 755228 752790 CM091754.1 scf7180000184230 99.18 True indel: indel (<= 5bp) 182445 182975 755761 755231 CM091754.1 scf7180000184230 98.68 True local misassembly 181199 181767 756709 756141 CM091754.1 scf7180000184230 99.82 True indel: indel (<= 5bp) 179655 181091 758251 756815 CM091754.1 scf7180000184230 99.65 True fake: scaffold gap size wrong estimation (local) 173908 179482 763772 758395 CM091754.1 scf7180000184230 95.94 True indel: indel (<= 5bp) 171187 173852 766500 763833 CM091754.1 scf7180000184230 99.7 True fake: scaffold gap size wrong estimation (local) 166194 170905 771237 766643 CM091754.1 scf7180000184230 96.51 True indel: indel (> 5bp) 165342 166078 772079 771343 CM091754.1 scf7180000184230 99.73 True local misassembly 164130 165012 772962 772080 CM091754.1 scf7180000184230 99.66 True fake: scaffold gap size wrong estimation (local) 163421 163961 773698 773158 CM091754.1 scf7180000184230 99.08 True local misassembly 161801 162825 775325 774301 CM091754.1 scf7180000184230 99.41 True indel: indel (<= 5bp) 161223 161799 775902 775326 CM091754.1 scf7180000184230 99.31 True indel: indel (> 5bp) 158416 160944 778731 776203 CM091754.1 scf7180000184230 99.8 True fake: scaffold gap size wrong estimation (local) 129704 158279 806568 778863 CM091754.1 scf7180000184230 96.05 True fake: scaffold gap size wrong estimation (local) 126999 128458 808788 807329 CM091754.1 scf7180000184230 99.18 True indel: indel (<= 5bp) 126261 126998 809530 808793 CM091754.1 scf7180000184230 98.92 True fake: scaffold gap size wrong estimation (local) 124621 125211 811079 810489 CM091754.1 scf7180000184230 99.83 True indel: indel (<= 5bp) 123234 124619 812465 811080 CM091754.1 scf7180000184230 98.85 True local misassembly 120890 121714 813410 812586 CM091754.1 scf7180000184230 99.76 True fake: scaffold gap size wrong estimation (local) 115753 120226 818544 814066 CM091754.1 scf7180000184230 98.84 True fake: scaffold gap size wrong estimation (local) 93589 115178 840962 819126 CM091754.1 scf7180000184230 98.06 True fake: scaffold gap size wrong estimation (local) 76556 93453 857784 841053 CM091754.1 scf7180000184230 98.05 True fake: not a misassembly (possible transposable element) 6682663 6684183 859308 857785 CM091751.1 scf7180000184230 98.17 True fake: not a misassembly (possible transposable element) 70247 75479 864418 859374 CM091754.1 scf7180000184230 95.99 True fake: scaffold gap size wrong estimation (local) 67901 70038 866654 864515 CM091754.1 scf7180000184230 99.81 True fake: scaffold gap size wrong estimation (local) 38471 67750 896849 866792 CM091754.1 scf7180000184230 97.3 True indel: indel (> 5bp) 33615 38254 901653 897006 CM091754.1 scf7180000184230 99.72 True fake: scaffold gap size wrong estimation (local) 21405 33462 913833 901773 CM091754.1 scf7180000184230 99.78 True fake: scaffold gap size wrong estimation (local) 18415 20756 916709 914368 CM091754.1 scf7180000184230 99.53 True fake: scaffold gap size wrong estimation (local) 16478 17518 918364 917324 CM091754.1 scf7180000184230 100.0 True translocation, scaffold gap is present 8921589 8922902 920002 921345 CM091767.1 scf7180000184230 99.02 True CONTIG scf7180000184230 921345 misassembled 16648 84408 428 68195 CM091757.1 scf7180000184231 99.4 True fake: scaffold gap size wrong estimation (local) 84519 262396 68287 246015 CM091757.1 scf7180000184231 99.43 True indel: indel (> 5bp) 262445 275894 246071 259298 CM091757.1 scf7180000184231 96.99 True fake: scaffold gap size wrong estimation (local) 275932 343502 259367 326503 CM091757.1 scf7180000184231 98.79 True indel: indel (<= 5bp) 343614 344916 326617 327919 CM091757.1 scf7180000184231 99.92 True fake: scaffold gap size wrong estimation (local) 345061 405298 328540 388724 CM091757.1 scf7180000184231 99.74 True fake: scaffold gap size wrong estimation (local) 405456 862181 388945 846074 CM091757.1 scf7180000184231 99.43 True fake: scaffold gap size wrong estimation (local) 862287 966524 846176 950283 CM091757.1 scf7180000184231 99.11 True fake: scaffold gap size wrong estimation (local) 966585 969342 950329 953097 CM091757.1 scf7180000184231 99.27 True fake: scaffold gap size wrong estimation (local) 972505 991865 956653 975854 CM091757.1 scf7180000184231 98.59 True fake: scaffold gap size wrong estimation (local) 992645 1014547 976720 998546 CM091757.1 scf7180000184231 99.05 True fake: scaffold gap size wrong estimation (local) 1015369 1031264 998991 1014915 CM091757.1 scf7180000184231 99.4 True fake: scaffold gap size wrong estimation (local) 1031648 1082448 1015252 1065886 CM091757.1 scf7180000184231 98.78 True fake: scaffold gap size wrong estimation (local) 1083738 1087494 1066603 1070372 CM091757.1 scf7180000184231 98.99 True fake: scaffold gap size wrong estimation (local) 1087591 1101486 1070455 1084490 CM091757.1 scf7180000184231 98.55 True fake: scaffold gap size wrong estimation (local) 1101564 1122353 1084555 1105474 CM091757.1 scf7180000184231 99.03 True fake: scaffold gap size wrong estimation (local) 1123086 1124970 1105754 1107646 CM091757.1 scf7180000184231 98.56 True fake: scaffold gap size wrong estimation (local) 1125176 1130346 1107782 1112940 CM091757.1 scf7180000184231 99.24 True fake: scaffold gap size wrong estimation (local) 1130510 1132679 1113051 1115225 CM091757.1 scf7180000184231 99.54 True fake: scaffold gap size wrong estimation (local) 1133110 1134310 1115341 1116541 CM091757.1 scf7180000184231 99.83 True fake: scaffold gap size wrong estimation (local) 1134514 1138629 1116762 1120883 CM091757.1 scf7180000184231 99.2 True fake: scaffold gap size wrong estimation (local) 1139000 1143096 1121043 1125106 CM091757.1 scf7180000184231 98.45 True fake: scaffold gap size wrong estimation (local) 1143177 1247155 1125180 1228752 CM091757.1 scf7180000184231 98.91 True fake: scaffold gap size wrong estimation (local) 1247602 1310056 1228921 1291287 CM091757.1 scf7180000184231 99.47 True fake: scaffold gap size wrong estimation (local) 1310337 1311995 1291476 1293134 CM091757.1 scf7180000184231 99.64 True fake: scaffold gap size wrong estimation (local) 1312871 1313454 1294013 1294596 CM091757.1 scf7180000184231 100.0 True fake: scaffold gap size wrong estimation (local) 1313986 1316018 1295516 1297548 CM091757.1 scf7180000184231 99.66 True fake: scaffold gap size wrong estimation (local) 1316287 1357326 1297716 1337989 CM091757.1 scf7180000184231 97.36 True fake: scaffold gap size wrong estimation (local) 1357431 1363231 1338080 1343882 CM091757.1 scf7180000184231 99.05 True fake: scaffold gap size wrong estimation (local) 1364678 1369350 1344804 1349490 CM091757.1 scf7180000184231 98.6 True fake: scaffold gap size wrong estimation (local) 1370035 1387939 1350077 1367802 CM091757.1 scf7180000184231 98.18 True indel: indel (> 5bp) 1388120 1405451 1368000 1385338 CM091757.1 scf7180000184231 99.45 True fake: scaffold gap size wrong estimation (local) 1405621 1430689 1385641 1410577 CM091757.1 scf7180000184231 99.01 True indel: indel (> 5bp) 1430840 1441330 1410745 1421029 CM091757.1 scf7180000184231 97.58 True fake: scaffold gap size wrong estimation (local) 1441540 1442322 1421204 1421986 CM091757.1 scf7180000184231 99.74 True indel: indel (> 5bp) 1442361 1446014 1422015 1425676 CM091757.1 scf7180000184231 99.45 True local misassembly 1446973 1454410 1426114 1433554 CM091757.1 scf7180000184231 99.61 True fake: scaffold gap size wrong estimation (local) 1454616 1460508 1433591 1439520 CM091757.1 scf7180000184231 98.24 True fake: scaffold gap size wrong estimation (local) 1460763 1462506 1439756 1441494 CM091757.1 scf7180000184231 99.25 True fake: scaffold gap size wrong estimation (local) 1462687 1478170 1441643 1457070 CM091757.1 scf7180000184231 99.03 True fake: scaffold gap size wrong estimation (local) 1478152 1480121 1457670 1459639 CM091757.1 scf7180000184231 98.93 True indel: indel (<= 5bp) 1480122 1481342 1459641 1460861 CM091757.1 scf7180000184231 99.75 True local misassembly 1481970 1482476 1461499 1462005 CM091757.1 scf7180000184231 99.8 True indel: indel (<= 5bp) 1482477 1483124 1462007 1462654 CM091757.1 scf7180000184231 99.54 True fake: scaffold gap size wrong estimation (local) 1483302 1485247 1463276 1465221 CM091757.1 scf7180000184231 99.59 True indel: stretch of mismatches 1485299 1486529 1465273 1466503 CM091757.1 scf7180000184231 99.92 True indel: indel (<= 5bp) 1486530 1487046 1466505 1467021 CM091757.1 scf7180000184231 99.42 True fake: scaffold gap size wrong estimation (local) 1487860 1488458 1467678 1468276 CM091757.1 scf7180000184231 99.83 True local misassembly 1488664 1489539 1468277 1469152 CM091757.1 scf7180000184231 97.37 True indel: indel (> 5bp) 1489605 1490893 1469194 1470482 CM091757.1 scf7180000184231 99.69 True indel: indel (<= 5bp) 1490906 1492075 1470500 1471669 CM091757.1 scf7180000184231 99.4 True indel: indel (> 5bp) 1492076 1492746 1471678 1472348 CM091757.1 scf7180000184231 99.85 True indel: indel (<= 5bp) 1492747 1493489 1472350 1473092 CM091757.1 scf7180000184231 99.73 True indel: indel (<= 5bp) 1493530 1494062 1473134 1473666 CM091757.1 scf7180000184231 99.62 True indel: indel (<= 5bp) 1494063 1495187 1473668 1474792 CM091757.1 scf7180000184231 98.49 True indel: indel (> 5bp) 1495194 1495812 1474793 1475411 CM091757.1 scf7180000184231 100.0 True local misassembly 1496194 1500474 1475598 1479727 CM091757.1 scf7180000184231 95.75 True fake: scaffold gap size wrong estimation (local) 1500765 1561990 1479795 1541120 CM091757.1 scf7180000184231 99.13 True fake: scaffold gap size wrong estimation (local) 1562884 1615723 1541641 1593267 CM091757.1 scf7180000184231 97.12 True local misassembly 1615743 1674082 1593434 1651595 CM091757.1 scf7180000184231 98.9 True fake: scaffold gap size wrong estimation (local) 1674212 1747755 1651871 1724984 CM091757.1 scf7180000184231 98.78 True fake: scaffold gap size wrong estimation (local) 1748513 1788221 1725240 1764686 CM091757.1 scf7180000184231 98.43 True fake: scaffold gap size wrong estimation (local) 1788338 1802565 1764794 1779077 CM091757.1 scf7180000184231 98.95 True indel: indel (> 5bp) 1802623 1808207 1779141 1784716 CM091757.1 scf7180000184231 99.32 True fake: scaffold gap size wrong estimation (local) 1808807 1870903 1784951 1846516 CM091757.1 scf7180000184231 98.34 True fake: scaffold gap size wrong estimation (local) 1871679 1872934 1847072 1848327 CM091757.1 scf7180000184231 99.44 True indel: indel (<= 5bp) 1873007 1876461 1848395 1851849 CM091757.1 scf7180000184231 99.71 True indel: indel (<= 5bp) 1876465 1877508 1851850 1852893 CM091757.1 scf7180000184231 99.04 True local misassembly 1878179 1879433 1853567 1854821 CM091757.1 scf7180000184231 99.84 True indel: indel (<= 5bp) 1879434 1881047 1854823 1856436 CM091757.1 scf7180000184231 99.69 True indel: indel (<= 5bp) 1881049 1882175 1856437 1857563 CM091757.1 scf7180000184231 99.47 True fake: scaffold gap size wrong estimation (local) 1882427 1884441 1858550 1860564 CM091757.1 scf7180000184231 99.8 True fake: scaffold gap size wrong estimation (local) 1884539 1902592 1860652 1878687 CM091757.1 scf7180000184231 99.32 True fake: scaffold gap size wrong estimation (local) 1902720 1904944 1878810 1881033 CM091757.1 scf7180000184231 99.1 True indel: indel (> 5bp) 1904990 1930603 1881092 1905995 CM091757.1 scf7180000184231 95.68 True indel: indel (> 5bp) 1930718 1934516 1906058 1909839 CM091757.1 scf7180000184231 98.29 True fake: scaffold gap size wrong estimation (local) 1935926 1939976 1910478 1914530 CM091757.1 scf7180000184231 99.38 True fake: scaffold gap size wrong estimation (local) 1940109 1994230 1914630 1968293 CM091757.1 scf7180000184231 98.27 True fake: scaffold gap size wrong estimation (local) 1994787 2001307 1968521 1975105 CM091757.1 scf7180000184231 98.78 True fake: scaffold gap size wrong estimation (local) 2002007 2032752 1975560 2005788 CM091757.1 scf7180000184231 97.83 True fake: scaffold gap size wrong estimation (local) 2033944 2038280 2006113 2010452 CM091757.1 scf7180000184231 99.56 True fake: scaffold gap size wrong estimation (local) 2039587 2105780 2011102 2076992 CM091757.1 scf7180000184231 98.92 True indel: indel (<= 5bp) 2105822 2145503 2077037 2116788 CM091757.1 scf7180000184231 99.38 True fake: scaffold gap size wrong estimation (local) 2145681 2147573 2116937 2118824 CM091757.1 scf7180000184231 97.54 True fake: scaffold gap size wrong estimation (local) 2148546 2218174 2119152 2189245 CM091757.1 scf7180000184231 99.18 True indel: indel (> 5bp) 2218229 2258622 2189309 2228518 CM091757.1 scf7180000184231 96.46 True indel: indel (> 5bp) 2258677 2295768 2228582 2265757 CM091757.1 scf7180000184231 99.01 True translocation 10251665 10550317 2265758 2564159 CM091753.1 scf7180000184231 99.45 True indel: indel (> 5bp) 10550672 10559634 2564533 2573496 CM091753.1 scf7180000184231 99.69 True fake: scaffold gap size wrong estimation (local) 10560973 10582496 2574450 2595991 CM091753.1 scf7180000184231 99.33 True local misassembly 10583746 10600907 2595992 2613165 CM091753.1 scf7180000184231 99.51 True fake: scaffold gap size wrong estimation (local) 10601114 10638279 2613337 2650478 CM091753.1 scf7180000184231 99.5 True fake: scaffold gap size wrong estimation (local) 10638949 10773824 2651019 2785912 CM091753.1 scf7180000184231 99.45 True fake: scaffold gap size wrong estimation (local) 10774041 10795586 2785988 2807514 CM091753.1 scf7180000184231 99.55 True fake: scaffold gap size wrong estimation (local) 10795728 10851007 2807633 2862849 CM091753.1 scf7180000184231 98.94 True CONTIG scf7180000184231 2862879 misassembled 1670222 1670743 985 464 CM091764.1 scf7180000184232 99.81 True fake: scaffold gap size wrong estimation (local) 1667570 1668395 3157 2332 CM091764.1 scf7180000184232 100.0 True indel: indel (<= 5bp) 1665730 1667569 4998 3159 CM091764.1 scf7180000184232 98.7 True fake: scaffold gap size wrong estimation (local) 1663561 1665262 7313 5612 CM091764.1 scf7180000184232 98.77 True fake: scaffold gap size wrong estimation (local) 1662537 1663560 8798 7775 CM091764.1 scf7180000184232 99.8 True translocation, scaffold gap is present 6196138 6196940 9344 10146 CM091768.1 scf7180000184232 98.88 True local misassembly 6197053 6198476 10349 11749 CM091768.1 scf7180000184232 97.93 True fake: scaffold gap size wrong estimation (local) 6199799 6200642 13066 13909 CM091768.1 scf7180000184232 100.0 True translocation, scaffold gap is present 9300559 9301108 14701 14151 CM091767.1 scf7180000184232 99.82 True indel: indel (> 5bp) 9297994 9300058 17215 15141 CM091767.1 scf7180000184232 99.71 True fake: scaffold gap size wrong estimation (local) 9292526 9297844 22579 17325 CM091767.1 scf7180000184232 97.75 True relocation, scaffold gap is present, inconsistency = 820308 8469282 8471191 25515 23606 CM091767.1 scf7180000184232 99.95 True fake: scaffold gap size wrong estimation (local) 8465116 8468092 29409 26433 CM091767.1 scf7180000184232 99.76 True fake: scaffold gap size wrong estimation (local) 8463219 8464662 31333 29890 CM091767.1 scf7180000184232 96.85 True indel: indel (> 5bp) 8448844 8463161 45853 31459 CM091767.1 scf7180000184232 95.14 True fake: scaffold gap size wrong estimation (local) 8447331 8448237 47381 46475 CM091767.1 scf7180000184232 99.45 True indel: indel (<= 5bp) 8445330 8447329 49381 47382 CM091767.1 scf7180000184232 99.9 True fake: scaffold gap size wrong estimation (local) 8442439 8443448 52219 51209 CM091767.1 scf7180000184232 99.8 True translocation, scaffold gap is present 1859346 1860206 54444 53584 CM091764.1 scf7180000184232 99.65 True fake: scaffold gap size wrong estimation (local) 1857984 1859345 56192 54831 CM091764.1 scf7180000184232 98.02 True indel: indel (> 5bp) 1855977 1857983 58254 56248 CM091764.1 scf7180000184232 99.95 True fake: scaffold gap size wrong estimation (local) 1846768 1855543 68054 59006 CM091764.1 scf7180000184232 97.22 True fake: scaffold gap size wrong estimation (local) 1844678 1845301 69339 68716 CM091764.1 scf7180000184232 99.04 True fake: scaffold gap size wrong estimation (local) 1839191 1843846 74738 69929 CM091764.1 scf7180000184232 97.36 True translocation 4858811 4862811 74739 78739 CM091768.1 scf7180000184232 99.98 True fake: scaffold gap size wrong estimation (local) 4863014 4871849 79171 88067 CM091768.1 scf7180000184232 99.53 True fake: scaffold gap size wrong estimation (local) 4872403 4873433 88271 89301 CM091768.1 scf7180000184232 100.0 True indel: indel (<= 5bp) 4873434 4880046 89303 95915 CM091768.1 scf7180000184232 100.0 True fake: scaffold gap size wrong estimation (local) 4880047 4883085 96239 99277 CM091768.1 scf7180000184232 100.0 True fake: scaffold gap size wrong estimation (local) 4883086 4885291 100775 102980 CM091768.1 scf7180000184232 99.82 True fake: scaffold gap size wrong estimation (local) 4885292 4885806 103107 103621 CM091768.1 scf7180000184232 100.0 True local misassembly 4886438 4887490 103622 104674 CM091768.1 scf7180000184232 97.91 True fake: scaffold gap size wrong estimation (local) 4887491 4891087 104696 108292 CM091768.1 scf7180000184232 99.86 True fake: scaffold gap size wrong estimation (local) 4891425 4891964 108648 109187 CM091768.1 scf7180000184232 99.63 True indel: indel (> 5bp) 4891985 4894470 109188 111673 CM091768.1 scf7180000184232 98.79 True fake: scaffold gap size wrong estimation (local) 4894551 4895588 112149 113186 CM091768.1 scf7180000184232 99.9 True fake: scaffold gap size wrong estimation (local) 4897605 4900951 114477 117823 CM091768.1 scf7180000184232 100.0 True fake: scaffold gap size wrong estimation (local) 4901642 4904157 119161 121702 CM091768.1 scf7180000184232 98.7 True translocation, scaffold gap is present 8331306 8332388 122244 123326 CM091767.1 scf7180000184232 98.71 True fake: scaffold gap size wrong estimation (local) 8332757 8333686 123999 124928 CM091767.1 scf7180000184232 99.89 True fake: scaffold gap size wrong estimation (local) 8334140 8338260 125260 129379 CM091767.1 scf7180000184232 99.95 True fake: scaffold gap size wrong estimation (local) 8339370 8340611 130494 131771 CM091767.1 scf7180000184232 97.06 True local misassembly 8341489 8346656 131813 136985 CM091767.1 scf7180000184232 99.32 True fake: scaffold gap size wrong estimation (local) 8347834 8348517 137289 137971 CM091767.1 scf7180000184232 99.85 True translocation, scaffold gap is present 15652551 15653243 139097 138405 CM091757.1 scf7180000184232 99.86 True relocation, scaffold gap is present, inconsistency = -97098 15748750 15749628 139996 139118 CM091757.1 scf7180000184232 99.89 True translocation, scaffold gap is present 1970616 2025556 140353 195315 CM091759.1 scf7180000184232 99.73 True indel: indel (> 5bp) 2025654 2046215 195432 216011 CM091759.1 scf7180000184232 99.7 True fake: not a misassembly (possible transposable element) 15746147 15748690 218806 216263 CM091757.1 scf7180000184232 100.0 True fake: not a misassembly (possible transposable element) 2046109 2121427 218857 294229 CM091759.1 scf7180000184232 99.71 True fake: scaffold gap size wrong estimation (local) 2121620 2125334 294365 298054 CM091759.1 scf7180000184232 98.84 True translocation, scaffold gap is present 15650351 15651715 299440 298075 CM091757.1 scf7180000184232 99.85 True translocation, scaffold gap is present 17763427 17765696 299491 301716 CM091751.1 scf7180000184232 95.95 True translocation 2126354 2127336 301717 302699 CM091759.1 scf7180000184232 99.37 True fake: scaffold gap size wrong estimation (local) 2127807 2128980 303056 304229 CM091759.1 scf7180000184232 99.83 True translocation, scaffold gap is present 15745380 15745889 305076 304567 CM091757.1 scf7180000184232 100.0 True relocation, scaffold gap is present, inconsistency = 95964 15648630 15649395 305862 305097 CM091757.1 scf7180000184232 100.0 True local misassembly 15651651 15652561 306793 305883 CM091757.1 scf7180000184232 100.0 True relocation, scaffold gap is present, inconsistency = -90036 15740456 15741155 308023 307325 CM091757.1 scf7180000184232 97.43 True fake: scaffold gap size wrong estimation (local) 15738026 15739056 310485 309455 CM091757.1 scf7180000184232 99.52 True translocation, scaffold gap is present 2133740 2134764 311266 312290 CM091759.1 scf7180000184232 99.61 True fake: scaffold gap size wrong estimation (local) 2135103 2247533 312520 424892 CM091759.1 scf7180000184232 99.62 True fake: scaffold gap size wrong estimation (local) 2247744 2430193 425123 606768 CM091759.1 scf7180000184232 99.24 True fake: scaffold gap size wrong estimation (local) 2430810 2475140 606997 651054 CM091759.1 scf7180000184232 99.1 True fake: scaffold gap size wrong estimation (local) 2475895 2476456 651440 652001 CM091759.1 scf7180000184232 99.92 True indel: stretch of mismatches 2476457 2493717 652002 669977 CM091759.1 scf7180000184232 95.96 True fake: scaffold gap size wrong estimation (local) 2494283 2516859 670151 692597 CM091759.1 scf7180000184232 99.31 True translocation, scaffold gap is present 3096253 3097969 693066 694782 CM091752.1 scf7180000184232 99.59 True indel: indel (> 5bp) 3098395 3099467 695221 696293 CM091752.1 scf7180000184232 98.32 True fake: scaffold gap size wrong estimation (local) 3100056 3100960 697150 698054 CM091752.1 scf7180000184232 99.78 True fake: scaffold gap size wrong estimation (local) 3102152 3105525 698523 701908 CM091752.1 scf7180000184232 99.91 True fake: scaffold gap size wrong estimation (local) 3107096 3107959 701929 702817 CM091752.1 scf7180000184232 98.66 True fake: scaffold gap size wrong estimation (local) 3108105 3121842 703309 717063 CM091752.1 scf7180000184232 99.18 True CONTIG scf7180000184232 717063 misassembled 16237575 16238112 565 28 CM091753.1 scf7180000184233 98.51 True relocation, scaffold gap is present, inconsistency = 48467 16188459 16189085 1214 588 CM091753.1 scf7180000184233 98.88 True relocation, scaffold gap is present, inconsistency = 46411 16140951 16141510 2311 1752 CM091753.1 scf7180000184233 97.32 True relocation, scaffold gap is present, inconsistency = -1495566 17579293 17635170 58721 3658 CM091753.1 scf7180000184233 98.11 True local misassembly 17536685 17578781 100823 58909 CM091753.1 scf7180000184233 98.95 True fake: scaffold gap size wrong estimation (local) 17513939 17536366 123653 101273 CM091753.1 scf7180000184233 99.16 True fake: scaffold gap size wrong estimation (local) 17478717 17513761 158866 123801 CM091753.1 scf7180000184233 99.46 True fake: scaffold gap size wrong estimation (local) 17468171 17477295 168983 160001 CM091753.1 scf7180000184233 98.22 True fake: scaffold gap size wrong estimation (local) 17400977 17467019 235833 169738 CM091753.1 scf7180000184233 99.45 True fake: scaffold gap size wrong estimation (local) 17380362 17400770 256498 236026 CM091753.1 scf7180000184233 99.45 True fake: scaffold gap size wrong estimation (local) 17352957 17380239 283685 256609 CM091753.1 scf7180000184233 98.12 True indel: indel (> 5bp) 17316782 17352900 318956 283748 CM091753.1 scf7180000184233 96.99 True fake: scaffold gap size wrong estimation (local) 17224799 17316308 410715 319127 CM091753.1 scf7180000184233 99.42 True fake: scaffold gap size wrong estimation (local) 17182828 17223629 451632 411324 CM091753.1 scf7180000184233 98.38 True fake: scaffold gap size wrong estimation (local) 17174172 17182688 460251 451735 CM091753.1 scf7180000184233 99.32 True fake: scaffold gap size wrong estimation (local) 17171353 17174094 463075 460331 CM091753.1 scf7180000184233 99.09 True fake: scaffold gap size wrong estimation (local) 17126961 17170996 506858 463193 CM091753.1 scf7180000184233 98.46 True fake: scaffold gap size wrong estimation (local) 17022364 17126238 611655 507622 CM091753.1 scf7180000184233 98.1 True local misassembly 16997449 17021655 636483 612399 CM091753.1 scf7180000184233 98.51 True fake: scaffold gap size wrong estimation (local) 16995775 16997315 638064 636524 CM091753.1 scf7180000184233 99.48 True fake: scaffold gap size wrong estimation (local) 16989269 16994905 644178 638541 CM091753.1 scf7180000184233 99.61 True indel: indel (> 5bp) 16888249 16989225 744440 644243 CM091753.1 scf7180000184233 98.42 True fake: scaffold gap size wrong estimation (local) 16886142 16887592 746294 744847 CM091753.1 scf7180000184233 99.45 True fake: scaffold gap size wrong estimation (local) 16875945 16885909 756413 746439 CM091753.1 scf7180000184233 99.33 True indel: indel (> 5bp) 16869103 16875824 762988 756488 CM091753.1 scf7180000184233 96.07 True fake: scaffold gap size wrong estimation (local) 16838283 16868986 793513 763085 CM091753.1 scf7180000184233 98.03 True fake: scaffold gap size wrong estimation (local) 16821006 16837698 810495 793930 CM091753.1 scf7180000184233 98.5 True fake: scaffold gap size wrong estimation (local) 16782009 16818344 846155 811100 CM091753.1 scf7180000184233 95.62 True fake: scaffold gap size wrong estimation (local) 16750257 16781826 878406 846809 CM091753.1 scf7180000184233 99.43 True fake: scaffold gap size wrong estimation (local) 16702724 16750099 925281 878779 CM091753.1 scf7180000184233 97.47 True indel: indel (> 5bp) 16701191 16702674 926800 925317 CM091753.1 scf7180000184233 99.6 True fake: scaffold gap size wrong estimation (local) 16699696 16700860 928070 926906 CM091753.1 scf7180000184233 99.83 True fake: scaffold gap size wrong estimation (local) 16618864 16699477 1008012 928205 CM091753.1 scf7180000184233 98.3 True fake: scaffold gap size wrong estimation (local) 16588275 16618540 1038580 1008504 CM091753.1 scf7180000184233 98.24 True fake: scaffold gap size wrong estimation (local) 16586987 16587659 1039798 1039126 CM091753.1 scf7180000184233 99.41 True relocation, scaffold gap is present, inconsistency = 32241 16545385 16551523 1049112 1043021 CM091753.1 scf7180000184233 97.86 True fake: scaffold gap size wrong estimation (local) 16513801 16544609 1080103 1049430 CM091753.1 scf7180000184233 98.95 True fake: scaffold gap size wrong estimation (local) 16434905 16513550 1157545 1080357 CM091753.1 scf7180000184233 97.49 True indel: indel (> 5bp) 16372835 16434853 1219702 1157612 CM091753.1 scf7180000184233 99.25 True fake: scaffold gap size wrong estimation (local) 16252546 16372583 1339734 1219853 CM091753.1 scf7180000184233 99.02 True fake: scaffold gap size wrong estimation (local) 16242093 16252400 1350001 1339809 CM091753.1 scf7180000184233 98.15 True fake: scaffold gap size wrong estimation (local) 16238430 16241989 1353609 1350086 CM091753.1 scf7180000184233 97.67 True relocation, inconsistency = 14826 16219964 16223352 1357254 1353861 CM091753.1 scf7180000184233 98.73 True fake: scaffold gap size wrong estimation (local) 16217194 16217696 1360239 1359737 CM091753.1 scf7180000184233 99.01 True fake: not a misassembly (possible transposable element) 16229112 16234708 1365854 1360265 CM091753.1 scf7180000184233 97.28 True fake: not a misassembly (possible transposable element) 16214132 16215166 1368069 1367051 CM091753.1 scf7180000184233 96.73 True relocation, scaffold gap is present, inconsistency = -12458 16223269 16225921 1371640 1368738 CM091753.1 scf7180000184233 98.68 True CONTIG scf7180000184233 1371645 misassembled 4775014 4972729 2 197190 CM091767.1 scf7180000184234 99.14 True indel: stretch of mismatches 4972806 4975548 197267 200010 CM091767.1 scf7180000184234 99.78 True local misassembly 4975944 4978691 200160 202907 CM091767.1 scf7180000184234 98.14 True fake: scaffold gap size wrong estimation (local) 4978789 4984755 203003 208911 CM091767.1 scf7180000184234 98.1 True fake: scaffold gap size wrong estimation (local) 4984850 4998176 209031 222479 CM091767.1 scf7180000184234 98.4 True fake: scaffold gap size wrong estimation (local) 4998461 5085637 222718 309260 CM091767.1 scf7180000184234 98.08 True fake: scaffold gap size wrong estimation (local) 5085766 5091862 309305 315504 CM091767.1 scf7180000184234 98.08 True indel: indel (> 5bp) 5091873 5113416 315537 336862 CM091767.1 scf7180000184234 97.68 True translocation 14963271 14964380 336863 337974 CM091755.1 scf7180000184234 99.03 True fake: scaffold gap size wrong estimation (local) 14964484 14971294 338074 344848 CM091755.1 scf7180000184234 98.48 True fake: scaffold gap size wrong estimation (local) 14972244 14973268 345021 346045 CM091755.1 scf7180000184234 100.0 True local misassembly 14971557 14993091 346146 367595 CM091755.1 scf7180000184234 99.03 True fake: scaffold gap size wrong estimation (local) 14993190 15034277 367652 408292 CM091755.1 scf7180000184234 98.33 True indel: indel (> 5bp) 15034476 15065589 408439 439587 CM091755.1 scf7180000184234 99.54 True indel: indel (> 5bp) 15065811 15089561 439738 463395 CM091755.1 scf7180000184234 98.83 True fake: scaffold gap size wrong estimation (local) 15089942 15090537 463528 464123 CM091755.1 scf7180000184234 99.66 True indel: indel (<= 5bp) 15090538 15091643 464126 465231 CM091755.1 scf7180000184234 99.46 True fake: scaffold gap size wrong estimation (local) 15093451 15094159 466730 467438 CM091755.1 scf7180000184234 100.0 True indel: indel (<= 5bp) 15094160 15095640 467440 468920 CM091755.1 scf7180000184234 99.8 True indel: indel (<= 5bp) 15095641 15096202 468922 469483 CM091755.1 scf7180000184234 99.82 True fake: scaffold gap size wrong estimation (local) 15097009 15133306 469760 506432 CM091755.1 scf7180000184234 97.22 True fake: not a misassembly (possible transposable element) 8564396 8565160 507077 507841 CM091767.1 scf7180000184234 99.87 True fake: not a misassembly (possible transposable element) 15133926 15134877 508303 509254 CM091755.1 scf7180000184234 99.68 True fake: scaffold gap size wrong estimation (local) 15134991 15135666 509385 510060 CM091755.1 scf7180000184234 99.85 True indel: indel (> 5bp) 15135667 15136200 510075 510608 CM091755.1 scf7180000184234 98.69 True fake: scaffold gap size wrong estimation (local) 15137083 15137597 511189 511703 CM091755.1 scf7180000184234 99.03 True indel: indel (> 5bp) 15137853 15139556 511965 513668 CM091755.1 scf7180000184234 99.82 True indel: indel (<= 5bp) 15139666 15142355 513780 516469 CM091755.1 scf7180000184234 99.78 True fake: scaffold gap size wrong estimation (local) 15142849 15143567 516785 517503 CM091755.1 scf7180000184234 99.72 True indel: indel (<= 5bp) 15144037 15144905 517972 518840 CM091755.1 scf7180000184234 99.54 True fake: scaffold gap size wrong estimation (local) 15145460 15149101 519380 523025 CM091755.1 scf7180000184234 99.48 True fake: scaffold gap size wrong estimation (local) 15150205 15152791 524291 526873 CM091755.1 scf7180000184234 99.31 True fake: scaffold gap size wrong estimation (local) 15152975 15196780 527032 571479 CM091755.1 scf7180000184234 95.03 True fake: scaffold gap size wrong estimation (local) 15196889 15199712 571579 574306 CM091755.1 scf7180000184234 96.1 True fake: scaffold gap size wrong estimation (local) 15199852 15210149 574391 584610 CM091755.1 scf7180000184234 98.28 True fake: scaffold gap size wrong estimation (local) 15210646 15212905 584985 587243 CM091755.1 scf7180000184234 99.73 True fake: scaffold gap size wrong estimation (local) 15213260 15216892 587488 591100 CM091755.1 scf7180000184234 98.99 True fake: scaffold gap size wrong estimation (local) 15217795 15255007 591505 628741 CM091755.1 scf7180000184234 99.54 True fake: scaffold gap size wrong estimation (local) 15255141 15256393 629053 630310 CM091755.1 scf7180000184234 97.94 True indel: indel (<= 5bp) 15256440 15262692 630354 636612 CM091755.1 scf7180000184234 99.84 True fake: scaffold gap size wrong estimation (local) 15262879 15276352 636727 650218 CM091755.1 scf7180000184234 99.81 True fake: scaffold gap size wrong estimation (local) 15276617 15283129 650436 656953 CM091755.1 scf7180000184234 99.83 True fake: scaffold gap size wrong estimation (local) 15283985 15288399 657492 661923 CM091755.1 scf7180000184234 99.71 True indel: indel (> 5bp) 15288626 15292616 662089 666080 CM091755.1 scf7180000184234 99.97 True translocation, scaffold gap is present 2346445 2372023 692549 666114 CM091766.1 scf7180000184234 96.05 True fake: scaffold gap size wrong estimation (local) 2328355 2345882 710262 692718 CM091766.1 scf7180000184234 98.63 True indel: indel (> 5bp) 2321600 2328239 716943 710366 CM091766.1 scf7180000184234 98.0 True indel: indel (> 5bp) 2318710 2321519 719805 716986 CM091766.1 scf7180000184234 99.36 True fake: scaffold gap size wrong estimation (local) 2294122 2318476 744338 719978 CM091766.1 scf7180000184234 99.65 True fake: scaffold gap size wrong estimation (local) 2284372 2295298 755299 744455 CM091766.1 scf7180000184234 98.58 True fake: scaffold gap size wrong estimation (local) 2276998 2284203 762673 755432 CM091766.1 scf7180000184234 99.0 True fake: scaffold gap size wrong estimation (local) 2151435 2276338 886304 763330 CM091766.1 scf7180000184234 97.92 True indel: indel (<= 5bp) 2128499 2151393 909251 886349 CM091766.1 scf7180000184234 99.24 True fake: not a misassembly (possible transposable element) 8918533 8919828 910568 909272 CM091764.1 scf7180000184234 99.85 True fake: not a misassembly (possible transposable element) 2088196 2128412 950594 910582 CM091766.1 scf7180000184234 98.88 True fake: scaffold gap size wrong estimation (local) 2070198 2086404 967527 951662 CM091766.1 scf7180000184234 95.89 True local misassembly 2012859 2069805 1024845 967639 CM091766.1 scf7180000184234 97.03 True fake: scaffold gap size wrong estimation (local) 2006096 2012637 1031467 1024937 CM091766.1 scf7180000184234 98.44 True indel: indel (<= 5bp) 1987062 2006031 1050528 1031535 CM091766.1 scf7180000184234 98.99 True fake: scaffold gap size wrong estimation (local) 1902129 1986910 1135175 1050818 CM091766.1 scf7180000184234 98.79 True local misassembly 1900228 1901877 1136864 1135258 CM091766.1 scf7180000184234 96.79 True local misassembly 1822481 1899842 1214241 1137031 CM091766.1 scf7180000184234 99.13 True indel: indel (> 5bp) 1810108 1822369 1226638 1214392 CM091766.1 scf7180000184234 99.28 True fake: scaffold gap size wrong estimation (local) 1779048 1809865 1257394 1226848 CM091766.1 scf7180000184234 98.29 True fake: scaffold gap size wrong estimation (local) 1683783 1778861 1352606 1257561 CM091766.1 scf7180000184234 99.12 True indel: indel (> 5bp) 1663610 1683759 1372770 1352660 CM091766.1 scf7180000184234 99.28 True fake: scaffold gap size wrong estimation (local) 1570641 1663528 1465920 1372992 CM091766.1 scf7180000184234 98.61 True indel: indel (<= 5bp) 1415932 1570579 1620679 1465978 CM091766.1 scf7180000184234 99.45 True indel: indel (<= 5bp) 1338380 1415923 1698215 1620686 CM091766.1 scf7180000184234 99.35 True fake: scaffold gap size wrong estimation (local) 1334511 1337965 1701817 1698365 CM091766.1 scf7180000184234 99.48 True fake: scaffold gap size wrong estimation (local) 978886 1334067 2056251 1702054 CM091766.1 scf7180000184234 99.07 True fake: scaffold gap size wrong estimation (local) 925876 978708 2109197 2056379 CM091766.1 scf7180000184234 99.47 True fake: scaffold gap size wrong estimation (local) 522691 925478 2511522 2109434 CM091766.1 scf7180000184234 99.28 True indel: indel (> 5bp) 449013 522631 2585501 2511571 CM091766.1 scf7180000184234 99.43 True indel: indel (> 5bp) 367629 448770 2666909 2585732 CM091766.1 scf7180000184234 99.76 True CONTIG scf7180000184234 2666946 misassembled 7514774 7522403 8493 864 CM091756.1 scf7180000184235 99.29 True fake: scaffold gap size wrong estimation (local) 7507271 7514297 15646 8620 CM091756.1 scf7180000184235 99.43 True indel: indel (> 5bp) 7446721 7507198 76294 15708 CM091756.1 scf7180000184235 99.15 True fake: scaffold gap size wrong estimation (local) 7286716 7446631 236405 76428 CM091756.1 scf7180000184235 98.98 True fake: scaffold gap size wrong estimation (local) 7255485 7286397 267907 237060 CM091756.1 scf7180000184235 99.58 True fake: scaffold gap size wrong estimation (local) 7234280 7254991 289139 268411 CM091756.1 scf7180000184235 99.74 True fake: scaffold gap size wrong estimation (local) 7218783 7234086 304552 289248 CM091756.1 scf7180000184235 99.6 True fake: scaffold gap size wrong estimation (local) 7217392 7217925 305865 305332 CM091756.1 scf7180000184235 98.69 True indel: indel (<= 5bp) 7216842 7217391 306416 305867 CM091756.1 scf7180000184235 99.64 True indel: indel (<= 5bp) 7215811 7216579 307452 306684 CM091756.1 scf7180000184235 96.88 True local misassembly 7213348 7214200 309684 308832 CM091756.1 scf7180000184235 99.88 True fake: scaffold gap size wrong estimation (local) 7186357 7213038 336596 309962 CM091756.1 scf7180000184235 99.12 True fake: scaffold gap size wrong estimation (local) 7139590 7186176 383082 336772 CM091756.1 scf7180000184235 98.44 True fake: scaffold gap size wrong estimation (local) 7135353 7139043 387098 383400 CM091756.1 scf7180000184235 98.76 True indel: indel (> 5bp) 7132372 7135328 390153 387154 CM091756.1 scf7180000184235 98.01 True fake: scaffold gap size wrong estimation (local) 7111995 7132167 410154 390272 CM091756.1 scf7180000184235 97.23 True indel: indel (> 5bp) 7109125 7111987 413028 410172 CM091756.1 scf7180000184235 99.41 True fake: scaffold gap size wrong estimation (local) 7090918 7108997 430839 413137 CM091756.1 scf7180000184235 96.92 True fake: scaffold gap size wrong estimation (local) 7042294 7090669 479302 431016 CM091756.1 scf7180000184235 97.94 True fake: scaffold gap size wrong estimation (local) 7001239 7041766 520375 479791 CM091756.1 scf7180000184235 99.55 True fake: scaffold gap size wrong estimation (local) 6775609 7000219 745493 521065 CM091756.1 scf7180000184235 99.86 True fake: scaffold gap size wrong estimation (local) 6754522 6775451 765675 745587 CM091756.1 scf7180000184235 95.79 True fake: scaffold gap size wrong estimation (local) 6677893 6754437 843217 766104 CM091756.1 scf7180000184235 98.88 True fake: scaffold gap size wrong estimation (local) 6662246 6677761 858305 843301 CM091756.1 scf7180000184235 95.51 True translocation 11095838 11119056 881310 858306 CM091755.1 scf7180000184235 97.99 True fake: scaffold gap size wrong estimation (local) 11060506 11095691 916460 881420 CM091755.1 scf7180000184235 98.73 True indel: indel (> 5bp) 11046008 11060472 931010 916530 CM091755.1 scf7180000184235 99.16 True fake: scaffold gap size wrong estimation (local) 11019143 11045737 957944 931249 CM091755.1 scf7180000184235 99.18 True fake: scaffold gap size wrong estimation (local) 10998346 11018850 978563 958205 CM091755.1 scf7180000184235 98.62 True fake: scaffold gap size wrong estimation (local) 10991744 10998157 985073 978662 CM091755.1 scf7180000184235 99.56 True fake: scaffold gap size wrong estimation (local) 10976156 10991509 1000612 985204 CM091755.1 scf7180000184235 99.3 True fake: not a misassembly (possible transposable element) 7375379 7375945 1000613 1001180 CM091754.1 scf7180000184235 99.05 True fake: not a misassembly (possible transposable element) 10957325 10976200 1019939 1001231 CM091755.1 scf7180000184235 98.09 True fake: scaffold gap size wrong estimation (local) 10942827 10957088 1034430 1020156 CM091755.1 scf7180000184235 99.45 True fake: scaffold gap size wrong estimation (local) 10889025 10942508 1088011 1034519 CM091755.1 scf7180000184235 98.22 True indel: indel (<= 5bp) 10867995 10888974 1108798 1088061 CM091755.1 scf7180000184235 98.21 True fake: scaffold gap size wrong estimation (local) 10841930 10866318 1133795 1109389 CM091755.1 scf7180000184235 99.38 True fake: scaffold gap size wrong estimation (local) 10829715 10841727 1145853 1133959 CM091755.1 scf7180000184235 98.31 True fake: scaffold gap size wrong estimation (local) 10828116 10829367 1147391 1146139 CM091755.1 scf7180000184235 99.68 True fake: scaffold gap size wrong estimation (local) 10817261 10825647 1156736 1148345 CM091755.1 scf7180000184235 98.78 True fake: scaffold gap size wrong estimation (local) 10772935 10817074 1200434 1156892 CM091755.1 scf7180000184235 98.0 True indel: indel (> 5bp) 10727094 10772816 1246384 1200599 CM091755.1 scf7180000184235 99.35 True CONTIG scf7180000184235 1246384 misassembled 6659844 6661898 2262 222 CM091756.1 scf7180000184236 98.88 True fake: scaffold gap size wrong estimation (local) 6655108 6659651 6912 2338 CM091756.1 scf7180000184236 99.17 True fake: scaffold gap size wrong estimation (local) 6590409 6654939 71509 7063 CM091756.1 scf7180000184236 98.23 True fake: scaffold gap size wrong estimation (local) 6572727 6590268 89011 71642 CM091756.1 scf7180000184236 98.12 True fake: scaffold gap size wrong estimation (local) 6558339 6572607 103381 89113 CM091756.1 scf7180000184236 98.56 True fake: scaffold gap size wrong estimation (local) 6534626 6558130 126893 103475 CM091756.1 scf7180000184236 98.44 True indel: indel (> 5bp) 6510753 6534529 150725 126951 CM091756.1 scf7180000184236 99.66 True local misassembly 6457954 6510460 203397 150860 CM091756.1 scf7180000184236 99.27 True fake: scaffold gap size wrong estimation (local) 6396541 6457831 264615 203473 CM091756.1 scf7180000184236 99.23 True indel: indel (<= 5bp) 6371869 6396508 289336 264649 CM091756.1 scf7180000184236 99.45 True indel: indel (<= 5bp) 6320106 6371791 341288 289412 CM091756.1 scf7180000184236 97.86 True fake: scaffold gap size wrong estimation (local) 6318044 6319730 343039 341370 CM091756.1 scf7180000184236 96.94 True fake: scaffold gap size wrong estimation (local) 6309894 6317747 351106 343172 CM091756.1 scf7180000184236 99.51 True fake: scaffold gap size wrong estimation (local) 6307820 6309283 352708 351242 CM091756.1 scf7180000184236 99.32 True local misassembly 6303840 6307113 356843 353555 CM091756.1 scf7180000184236 99.63 True fake: not a misassembly (possible transposable element) 7412023 7412591 356844 357412 CM091755.1 scf7180000184236 100.0 True fake: not a misassembly (possible transposable element) 6269644 6303974 391452 357433 CM091756.1 scf7180000184236 95.53 True indel: indel (> 5bp) 6250206 6269599 410510 391504 CM091756.1 scf7180000184236 96.5 True fake: scaffold gap size wrong estimation (local) 6223869 6247936 442095 418273 CM091756.1 scf7180000184236 97.96 True indel: indel (> 5bp) 6210047 6223772 455769 442124 CM091756.1 scf7180000184236 98.38 True fake: scaffold gap size wrong estimation (local) 6169144 6209866 496699 456016 CM091756.1 scf7180000184236 99.12 True fake: not a misassembly (possible transposable element) 9938454 9939239 497526 496741 CM091760.1 scf7180000184236 99.62 True fake: not a misassembly (possible transposable element) 6121326 6168779 544742 497571 CM091756.1 scf7180000184236 98.91 True indel: indel (> 5bp) 6113187 6121282 552891 544804 CM091756.1 scf7180000184236 99.62 True fake: scaffold gap size wrong estimation (local) 6091823 6112945 574197 553073 CM091756.1 scf7180000184236 99.62 True fake: not a misassembly (possible transposable element) 11759234 11759788 574772 574218 CM091762.1 scf7180000184236 99.82 True fake: not a misassembly (possible transposable element) 6072541 6093042 595234 574773 CM091756.1 scf7180000184236 99.3 True fake: scaffold gap size wrong estimation (local) 6061186 6071335 606109 595956 CM091756.1 scf7180000184236 99.76 True fake: scaffold gap size wrong estimation (local) 6015349 6060928 651860 606265 CM091756.1 scf7180000184236 99.34 True fake: scaffold gap size wrong estimation (local) 5851070 6014024 815338 652458 CM091756.1 scf7180000184236 99.27 True fake: scaffold gap size wrong estimation (local) 5758075 5850848 907897 815515 CM091756.1 scf7180000184236 98.92 True fake: scaffold gap size wrong estimation (local) 5755126 5757841 910805 908086 CM091756.1 scf7180000184236 99.38 True fake: scaffold gap size wrong estimation (local) 5754030 5754724 911797 911105 CM091756.1 scf7180000184236 99.57 True fake: scaffold gap size wrong estimation (local) 5732824 5753931 933027 911919 CM091756.1 scf7180000184236 98.88 True fake: scaffold gap size wrong estimation (local) 5665412 5731805 999560 933156 CM091756.1 scf7180000184236 99.46 True fake: scaffold gap size wrong estimation (local) 5623960 5665256 1040478 999698 CM091756.1 scf7180000184236 98.11 True fake: scaffold gap size wrong estimation (local) 5613942 5623824 1050476 1040596 CM091756.1 scf7180000184236 99.43 True fake: scaffold gap size wrong estimation (local) 5609251 5613788 1055070 1050575 CM091756.1 scf7180000184236 98.37 True fake: scaffold gap size wrong estimation (local) 5594750 5609079 1069464 1055126 CM091756.1 scf7180000184236 99.43 True fake: scaffold gap size wrong estimation (local) 5539421 5594652 1124482 1069570 CM091756.1 scf7180000184236 98.76 True fake: scaffold gap size wrong estimation (local) 5432600 5539118 1231294 1124713 CM091756.1 scf7180000184236 99.52 True fake: scaffold gap size wrong estimation (local) 5419218 5432381 1244680 1231463 CM091756.1 scf7180000184236 99.08 True fake: scaffold gap size wrong estimation (local) 5200124 5419022 1463739 1245044 CM091756.1 scf7180000184236 99.31 True CONTIG scf7180000184236 1463739 correct 12743574 12748465 5062 1 CM091754.1 scf7180000184237 98.8 True fake: scaffold gap size wrong estimation (local) 12662826 12742747 85516 5737 CM091754.1 scf7180000184237 98.59 True fake: scaffold gap size wrong estimation (local) 12469903 12662501 277460 85711 CM091754.1 scf7180000184237 98.71 True fake: scaffold gap size wrong estimation (local) 12387774 12469667 359506 277696 CM091754.1 scf7180000184237 99.14 True indel: stretch of mismatches 12353803 12387761 393458 359519 CM091754.1 scf7180000184237 98.94 True fake: scaffold gap size wrong estimation (local) 12322075 12353239 425017 393924 CM091754.1 scf7180000184237 96.51 True indel: indel (<= 5bp) 12300774 12322005 446167 425082 CM091754.1 scf7180000184237 98.67 True fake: scaffold gap size wrong estimation (local) 12260510 12300516 486243 446285 CM091754.1 scf7180000184237 99.37 True indel: indel (<= 5bp) 12249594 12260210 497013 486538 CM091754.1 scf7180000184237 97.8 True fake: scaffold gap size wrong estimation (local) 12100838 12248402 644933 497621 CM091754.1 scf7180000184237 99.03 True relocation, inconsistency = 21821 12040222 12075936 683741 648014 CM091754.1 scf7180000184237 99.55 True indel: stretch of mismatches 12007598 12040177 716064 683786 CM091754.1 scf7180000184237 98.45 True indel: indel (<= 5bp) 11902435 12007522 821028 716135 CM091754.1 scf7180000184237 98.93 True fake: scaffold gap size wrong estimation (local) 11900513 11902289 822941 821158 CM091754.1 scf7180000184237 99.11 True translocation 6897742 6952966 877787 822942 CM091753.1 scf7180000184237 98.71 True fake: scaffold gap size wrong estimation (local) 6800192 6896908 974988 878245 CM091753.1 scf7180000184237 99.17 True fake: scaffold gap size wrong estimation (local) 6785252 6799957 990067 975200 CM091753.1 scf7180000184237 98.73 True indel: indel (<= 5bp) 6656157 6785143 1119159 990172 CM091753.1 scf7180000184237 99.36 True fake: scaffold gap size wrong estimation (local) 6466078 6655925 1309088 1119392 CM091753.1 scf7180000184237 99.19 True indel: indel (> 5bp) 6371661 6465878 1403433 1309301 CM091753.1 scf7180000184237 99.38 True relocation, inconsistency = 38796 6232586 6332864 1503664 1403434 CM091753.1 scf7180000184237 99.29 True fake: scaffold gap size wrong estimation (local) 6121754 6232467 1614824 1503766 CM091753.1 scf7180000184237 99.21 True local misassembly 6002380 6121560 1734086 1614884 CM091753.1 scf7180000184237 99.37 True indel: indel (> 5bp) 5958424 6002311 1778069 1734147 CM091753.1 scf7180000184237 99.36 True fake: scaffold gap size wrong estimation (local) 5941558 5958301 1794935 1778168 CM091753.1 scf7180000184237 99.43 True indel: indel (> 5bp) 5685465 5941533 2051217 1794970 CM091753.1 scf7180000184237 99.32 True fake: scaffold gap size wrong estimation (local) 5567557 5685287 2169240 2051437 CM091753.1 scf7180000184237 99.09 True indel: indel (> 5bp) 5523512 5567321 2213289 2169448 CM091753.1 scf7180000184237 99.25 True indel: stretch of mismatches 5490476 5523511 2246326 2213290 CM091753.1 scf7180000184237 99.22 True fake: scaffold gap size wrong estimation (local) 5462355 5490073 2274413 2246593 CM091753.1 scf7180000184237 98.58 True fake: scaffold gap size wrong estimation (local) 5419580 5461893 2316888 2274551 CM091753.1 scf7180000184237 99.38 True fake: scaffold gap size wrong estimation (local) 5294175 5419437 2441969 2317010 CM091753.1 scf7180000184237 98.97 True fake: scaffold gap size wrong estimation (local) 5151404 5293298 2585461 2442508 CM091753.1 scf7180000184237 98.65 True fake: scaffold gap size wrong estimation (local) 5129360 5150447 2607188 2586121 CM091753.1 scf7180000184237 99.73 True fake: scaffold gap size wrong estimation (local) 5123718 5129234 2612844 2607299 CM091753.1 scf7180000184237 99.46 True indel: indel (> 5bp) 5122658 5123627 2613933 2612965 CM091753.1 scf7180000184237 99.71 True translocation 6807494 6809948 2616388 2613934 CM091757.1 scf7180000184237 99.84 True CONTIG scf7180000184237 2616403 misassembled 5504160 5505923 1 1765 CM091766.1 scf7180000184238 99.61 True translocation 2975543 3041720 1766 67917 CM091751.1 scf7180000184238 97.59 True fake: scaffold gap size wrong estimation (local) 3042091 3055756 68130 81861 CM091751.1 scf7180000184238 98.59 True indel: indel (> 5bp) 3055799 3091671 81930 117611 CM091751.1 scf7180000184238 98.08 True fake: scaffold gap size wrong estimation (local) 3091896 3101164 117833 127105 CM091751.1 scf7180000184238 99.56 True fake: scaffold gap size wrong estimation (local) 3101271 3127288 127202 153368 CM091751.1 scf7180000184238 97.02 True local misassembly 3127441 3144892 153412 170651 CM091751.1 scf7180000184238 97.99 True indel: indel (> 5bp) 3144964 3308342 170705 333850 CM091751.1 scf7180000184238 98.76 True fake: scaffold gap size wrong estimation (local) 3309255 3333609 334664 359037 CM091751.1 scf7180000184238 99.42 True fake: scaffold gap size wrong estimation (local) 3334365 3359811 359580 385044 CM091751.1 scf7180000184238 99.04 True fake: scaffold gap size wrong estimation (local) 3359931 3508262 385145 533125 CM091751.1 scf7180000184238 99.35 True fake: scaffold gap size wrong estimation (extensive) 3515492 3516137 533146 533790 CM091751.1 scf7180000184238 99.85 True relocation, scaffold gap is present, inconsistency = -7839 3508319 3511626 533811 537118 CM091751.1 scf7180000184238 99.82 True fake: scaffold gap size wrong estimation (local) 3518213 3561226 538170 581112 CM091751.1 scf7180000184238 99.05 True fake: scaffold gap size wrong estimation (local) 3561665 3605949 581606 625940 CM091751.1 scf7180000184238 99.19 True fake: scaffold gap size wrong estimation (local) 3606127 3612448 626042 632375 CM091751.1 scf7180000184238 99.32 True fake: scaffold gap size wrong estimation (local) 3612718 3637486 632586 657362 CM091751.1 scf7180000184238 99.1 True fake: scaffold gap size wrong estimation (local) 3637701 3659740 657527 679564 CM091751.1 scf7180000184238 99.16 True fake: scaffold gap size wrong estimation (local) 3659816 3660372 679721 680277 CM091751.1 scf7180000184238 98.28 True fake: not a misassembly (possible transposable element) 115973 117745 680278 682057 CM091754.1 scf7180000184238 98.54 True fake: not a misassembly (possible transposable element) 3660240 3710973 682078 732790 CM091751.1 scf7180000184238 99.25 True indel: indel (> 5bp) 3711023 3755547 732860 777218 CM091751.1 scf7180000184238 98.62 True indel: indel (> 5bp) 3755586 3913616 777280 935455 CM091751.1 scf7180000184238 99.14 True indel: indel (<= 5bp) 3913663 3916487 935504 938327 CM091751.1 scf7180000184238 99.47 True indel: indel (> 5bp) 3916545 3991680 938377 1013567 CM091751.1 scf7180000184238 99.22 True indel: indel (> 5bp) 3991813 3993636 1013735 1015567 CM091751.1 scf7180000184238 97.49 True fake: scaffold gap size wrong estimation (local) 3994138 4003731 1015941 1025550 CM091751.1 scf7180000184238 99.26 True indel: indel (> 5bp) 4003812 4033680 1025684 1055569 CM091751.1 scf7180000184238 99.25 True indel: indel (> 5bp) 4033787 4152025 1055629 1174078 CM091751.1 scf7180000184238 99.14 True indel: indel (> 5bp) 4152093 4178960 1174179 1201011 CM091751.1 scf7180000184238 99.13 True fake: scaffold gap size wrong estimation (local) 4179114 4220062 1201150 1241975 CM091751.1 scf7180000184238 98.69 True fake: scaffold gap size wrong estimation (local) 4220272 4240049 1242165 1261976 CM091751.1 scf7180000184238 98.97 True local misassembly 4240145 4455982 1262166 1478266 CM091751.1 scf7180000184238 99.2 True fake: scaffold gap size wrong estimation (local) 4456211 4486305 1478441 1508488 CM091751.1 scf7180000184238 99.21 True indel: indel (> 5bp) 4486376 4622873 1508579 1644927 CM091751.1 scf7180000184238 99.17 True CONTIG scf7180000184238 1644927 misassembled 3970493 3971094 626 25 CM091767.1 scf7180000184239 99.5 True fake: scaffold gap size wrong estimation (local) 3961114 3966266 8676 3530 CM091767.1 scf7180000184239 99.4 True fake: scaffold gap size wrong estimation (local) 3959165 3960987 10564 8771 CM091767.1 scf7180000184239 97.43 True indel: indel (> 5bp) 3880871 3958987 89065 10767 CM091767.1 scf7180000184239 98.97 True fake: scaffold gap size wrong estimation (local) 3768431 3880794 201133 89130 CM091767.1 scf7180000184239 99.34 True translocation, scaffold gap is present 3446374 3480852 201154 235577 CM091765.1 scf7180000184239 99.78 True translocation 3696595 3769585 308519 235578 CM091767.1 scf7180000184239 99.78 True indel: indel (> 5bp) 3674441 3696388 330694 308738 CM091767.1 scf7180000184239 99.64 True fake: scaffold gap size wrong estimation (local) 3647845 3674348 357074 330779 CM091767.1 scf7180000184239 98.7 True fake: scaffold gap size wrong estimation (local) 3623897 3647675 380941 357198 CM091767.1 scf7180000184239 99.63 True fake: scaffold gap size wrong estimation (local) 3622361 3623731 382717 381347 CM091767.1 scf7180000184239 99.93 True fake: scaffold gap size wrong estimation (local) 3617088 3622091 388457 383457 CM091767.1 scf7180000184239 99.05 True fake: scaffold gap size wrong estimation (local) 3549478 3616971 457627 388572 CM091767.1 scf7180000184239 97.16 True fake: scaffold gap size wrong estimation (local) 3546390 3549323 460686 457743 CM091767.1 scf7180000184239 99.19 True indel: indel (> 5bp) 3542272 3546262 464849 460859 CM091767.1 scf7180000184239 99.35 True fake: scaffold gap size wrong estimation (local) 3416120 3540738 590253 465623 CM091767.1 scf7180000184239 99.67 True indel: indel (<= 5bp) 3350153 3415951 656244 590423 CM091767.1 scf7180000184239 99.5 True fake: scaffold gap size wrong estimation (local) 3336924 3348281 668341 657079 CM091767.1 scf7180000184239 98.29 True indel: indel (> 5bp) 3336107 3336818 669084 668373 CM091767.1 scf7180000184239 100.0 True indel: indel (<= 5bp) 3335461 3336106 669731 669086 CM091767.1 scf7180000184239 99.69 True indel: indel (<= 5bp) 3334931 3335460 670262 669733 CM091767.1 scf7180000184239 99.81 True indel: indel (> 5bp) 3331209 3334604 673992 670597 CM091767.1 scf7180000184239 99.5 True indel: indel (<= 5bp) 3330668 3331207 674532 673993 CM091767.1 scf7180000184239 99.81 True indel: indel (<= 5bp) 3329804 3330667 675397 674534 CM091767.1 scf7180000184239 99.54 True indel: stretch of mismatches 3328311 3329449 676890 675752 CM091767.1 scf7180000184239 99.91 True indel: indel (<= 5bp) 3327073 3328310 678129 676892 CM091767.1 scf7180000184239 99.68 True indel: indel (> 5bp) 3326472 3327063 678721 678130 CM091767.1 scf7180000184239 99.66 True fake: scaffold gap size wrong estimation (local) 3323920 3325800 681275 679395 CM091767.1 scf7180000184239 99.42 True indel: indel (<= 5bp) 3322455 3323919 682741 681277 CM091767.1 scf7180000184239 99.25 True indel: indel (<= 5bp) 3321636 3322454 683565 682747 CM091767.1 scf7180000184239 96.7 True local misassembly 3319855 3320819 685244 684280 CM091767.1 scf7180000184239 99.38 True fake: scaffold gap size wrong estimation (local) 3318998 3319508 686108 685598 CM091767.1 scf7180000184239 100.0 True local misassembly 3317408 3318244 687699 686863 CM091767.1 scf7180000184239 99.64 True indel: indel (<= 5bp) 3316025 3317265 689086 687846 CM091767.1 scf7180000184239 99.52 True indel: indel (<= 5bp) 3314704 3316024 690408 689088 CM091767.1 scf7180000184239 99.92 True fake: scaffold gap size wrong estimation (local) 3313249 3314341 692024 690932 CM091767.1 scf7180000184239 99.91 True local misassembly 3309504 3312216 694737 692025 CM091767.1 scf7180000184239 99.89 True fake: scaffold gap size wrong estimation (local) 3307182 3308666 697088 695604 CM091767.1 scf7180000184239 99.8 True indel: indel (<= 5bp) 3306398 3307179 697870 697089 CM091767.1 scf7180000184239 99.36 True indel: indel (<= 5bp) 3305225 3306397 699045 697873 CM091767.1 scf7180000184239 99.74 True indel: indel (<= 5bp) 3304596 3305224 699675 699047 CM091767.1 scf7180000184239 99.84 True indel: indel (<= 5bp) 3303878 3304595 700394 699677 CM091767.1 scf7180000184239 99.86 True indel: indel (<= 5bp) 3303247 3303876 701024 700395 CM091767.1 scf7180000184239 100.0 True local misassembly 3300388 3301157 703815 703046 CM091767.1 scf7180000184239 99.35 True indel: indel (> 5bp) 3299109 3300219 705086 703976 CM091767.1 scf7180000184239 99.28 True local misassembly 3297535 3298221 706401 705715 CM091767.1 scf7180000184239 99.85 True indel: indel (<= 5bp) 3296742 3297534 707195 706403 CM091767.1 scf7180000184239 99.75 True local misassembly 3294926 3295684 709021 708263 CM091767.1 scf7180000184239 99.87 True indel: indel (> 5bp) 3293917 3294918 710023 709022 CM091767.1 scf7180000184239 99.3 True local misassembly 3290994 3292365 711578 710207 CM091767.1 scf7180000184239 99.13 True indel: indel (<= 5bp) 3289755 3290993 712818 711580 CM091767.1 scf7180000184239 99.6 True indel: stretch of mismatches 3289175 3289723 713398 712850 CM091767.1 scf7180000184239 99.45 True local misassembly 3286631 3288013 715642 714260 CM091767.1 scf7180000184239 99.35 True indel: indel (<= 5bp) 3285867 3286629 716405 715643 CM091767.1 scf7180000184239 98.95 True indel: indel (<= 5bp) 3285359 3285865 716912 716406 CM091767.1 scf7180000184239 99.41 True indel: indel (<= 5bp) 3284538 3285358 717735 716915 CM091767.1 scf7180000184239 99.76 True local misassembly 3282854 3283846 718842 717850 CM091767.1 scf7180000184239 99.4 True fake: scaffold gap size wrong estimation (local) 3281802 3282853 719909 718858 CM091767.1 scf7180000184239 99.62 True fake: scaffold gap size wrong estimation (local) 3279971 3281706 721758 720023 CM091767.1 scf7180000184239 99.42 True fake: scaffold gap size wrong estimation (local) 3278953 3279735 722791 722009 CM091767.1 scf7180000184239 99.87 True fake: scaffold gap size wrong estimation (local) 3277765 3278608 723991 723148 CM091767.1 scf7180000184239 99.64 True local misassembly 3275264 3277144 726495 724615 CM091767.1 scf7180000184239 99.79 True indel: indel (<= 5bp) 3274473 3275263 727287 726497 CM091767.1 scf7180000184239 99.87 True indel: indel (<= 5bp) 3273388 3274329 728374 727433 CM091767.1 scf7180000184239 99.89 True indel: indel (<= 5bp) 3267649 3273387 734116 728378 CM091767.1 scf7180000184239 99.63 True indel: indel (> 5bp) 3265701 3267282 736034 734453 CM091767.1 scf7180000184239 99.75 True indel: indel (<= 5bp) 3264928 3265695 736802 736035 CM091767.1 scf7180000184239 99.87 True indel: indel (<= 5bp) 3263984 3264927 737747 736804 CM091767.1 scf7180000184239 99.26 True local misassembly 3260896 3262359 740834 739371 CM091767.1 scf7180000184239 99.73 True indel: indel (<= 5bp) 3259310 3260895 742421 740836 CM091767.1 scf7180000184239 99.81 True indel: indel (> 5bp) 3258566 3259281 743172 742457 CM091767.1 scf7180000184239 99.58 True fake: scaffold gap size wrong estimation (local) 3233151 3258363 768606 743326 CM091767.1 scf7180000184239 99.3 True local misassembly 3214318 3229242 783521 768607 CM091767.1 scf7180000184239 99.76 True indel: indel (> 5bp) 3197423 3214268 800419 783580 CM091767.1 scf7180000184239 99.39 True fake: scaffold gap size wrong estimation (local) 3100795 3197314 897255 800506 CM091767.1 scf7180000184239 98.41 True indel: indel (> 5bp) 3018962 3100726 979107 897333 CM091767.1 scf7180000184239 99.26 True indel: indel (> 5bp) 3004412 3018823 993678 979230 CM091767.1 scf7180000184239 98.95 True local misassembly 2975319 3004301 1022654 993886 CM091767.1 scf7180000184239 98.08 True fake: scaffold gap size wrong estimation (local) 2971057 2975038 1026862 1022889 CM091767.1 scf7180000184239 98.72 True indel: indel (> 5bp) 2968753 2970658 1029229 1027322 CM091767.1 scf7180000184239 99.42 True fake: scaffold gap size wrong estimation (local) 2549289 2968510 1446280 1029416 CM091767.1 scf7180000184239 98.94 True fake: scaffold gap size wrong estimation (local) 2448084 2548362 1546537 1446687 CM091767.1 scf7180000184239 98.89 True fake: scaffold gap size wrong estimation (local) 2439317 2447922 1555211 1546601 CM091767.1 scf7180000184239 99.54 True fake: scaffold gap size wrong estimation (local) 2377940 2439066 1616065 1555428 CM091767.1 scf7180000184239 98.18 True fake: scaffold gap size wrong estimation (local) 2356516 2377893 1637539 1616103 CM091767.1 scf7180000184239 99.33 True fake: scaffold gap size wrong estimation (local) 2347859 2356277 1646223 1637750 CM091767.1 scf7180000184239 98.05 True CONTIG scf7180000184239 1646427 misassembled 11118877 11146478 1 27676 CM091755.1 scf7180000184240 99.12 True indel: indel (> 5bp) 11146543 11194609 27727 75321 CM091755.1 scf7180000184240 97.8 True fake: scaffold gap size wrong estimation (local) 11195038 11207484 75916 88331 CM091755.1 scf7180000184240 99.12 True fake: scaffold gap size wrong estimation (local) 11207670 11228656 88468 109595 CM091755.1 scf7180000184240 98.78 True fake: scaffold gap size wrong estimation (local) 11228883 11297925 109763 178575 CM091755.1 scf7180000184240 98.84 True fake: scaffold gap size wrong estimation (local) 11298076 11332357 178696 212824 CM091755.1 scf7180000184240 98.82 True fake: scaffold gap size wrong estimation (local) 11332578 11344665 212996 225083 CM091755.1 scf7180000184240 99.98 True fake: scaffold gap size wrong estimation (local) 11345689 11415882 225759 295988 CM091755.1 scf7180000184240 99.91 True indel: indel (<= 5bp) 11415891 11546918 295995 426781 CM091755.1 scf7180000184240 99.53 True translocation, scaffold gap is present 13836409 13883819 474364 426914 CM091760.1 scf7180000184240 98.27 True local misassembly 13835059 13835892 475640 474924 CM091760.1 scf7180000184240 97.41 True fake: not a misassembly (possible transposable element) 13889295 13890450 476802 475661 CM091760.1 scf7180000184240 98.53 True fake: not a misassembly (possible transposable element) 13831103 13834645 480678 477136 CM091760.1 scf7180000184240 99.41 True fake: scaffold gap size wrong estimation (local) 13829537 13830106 481991 481422 CM091760.1 scf7180000184240 99.65 True indel: indel (<= 5bp) 13828688 13829535 482839 481992 CM091760.1 scf7180000184240 99.17 True local misassembly 13827241 13828087 484419 483573 CM091760.1 scf7180000184240 99.88 True indel: indel (<= 5bp) 13825657 13827240 486006 484423 CM091760.1 scf7180000184240 99.31 True indel: stretch of mismatches 13824004 13825362 487659 486301 CM091760.1 scf7180000184240 98.09 True fake: scaffold gap size wrong estimation (local) 13822581 13823217 488672 488036 CM091760.1 scf7180000184240 99.37 True indel: indel (<= 5bp) 13820923 13822580 490331 488674 CM091760.1 scf7180000184240 99.64 True indel: indel (<= 5bp) 13819054 13820922 492201 490333 CM091760.1 scf7180000184240 99.68 True fake: scaffold gap size wrong estimation (local) 13818281 13818954 492989 492316 CM091760.1 scf7180000184240 98.52 True indel: indel (<= 5bp) 13817499 13818279 493770 492990 CM091760.1 scf7180000184240 99.36 True indel: indel (<= 5bp) 13815855 13817042 495416 494229 CM091760.1 scf7180000184240 99.75 True indel: indel (<= 5bp) 13814815 13815402 496457 495870 CM091760.1 scf7180000184240 99.66 True fake: scaffold gap size wrong estimation (local) 13810427 13812618 500327 498136 CM091760.1 scf7180000184240 99.54 True indel: indel (> 5bp) 13809452 13810175 501293 500570 CM091760.1 scf7180000184240 100.0 True indel: stretch of mismatches 13808250 13809263 502495 501482 CM091760.1 scf7180000184240 99.41 True local misassembly 13805616 13807235 505114 503495 CM091760.1 scf7180000184240 99.63 True local misassembly 13803881 13804738 506841 505984 CM091760.1 scf7180000184240 99.53 True local misassembly 13802160 13803281 508566 507445 CM091760.1 scf7180000184240 99.11 True local misassembly 13799363 13799872 511363 510854 CM091760.1 scf7180000184240 99.8 True indel: indel (> 5bp) 13798343 13799026 512369 511686 CM091760.1 scf7180000184240 99.71 True indel: indel (<= 5bp) 13797574 13798338 513134 512370 CM091760.1 scf7180000184240 99.74 True fake: scaffold gap size wrong estimation (local) 13795100 13796546 516062 514616 CM091760.1 scf7180000184240 99.86 True fake: scaffold gap size wrong estimation (local) 13789608 13792399 521240 518431 CM091760.1 scf7180000184240 98.83 True local misassembly 13787585 13788354 522508 521739 CM091760.1 scf7180000184240 99.74 True indel: indel (<= 5bp) 13786753 13787583 523339 522509 CM091760.1 scf7180000184240 99.28 True fake: scaffold gap size wrong estimation (local) 13784416 13785319 525053 524150 CM091760.1 scf7180000184240 99.34 True indel: indel (<= 5bp) 13783469 13784415 526001 525055 CM091760.1 scf7180000184240 99.89 True indel: stretch of mismatches 13781117 13783320 528353 526150 CM091760.1 scf7180000184240 98.59 True fake: scaffold gap size wrong estimation (local) 13779187 13779814 530139 529512 CM091760.1 scf7180000184240 99.2 True fake: scaffold gap size wrong estimation (local) 13777262 13778358 531917 530821 CM091760.1 scf7180000184240 99.82 True indel: indel (<= 5bp) 13776191 13776915 532992 532268 CM091760.1 scf7180000184240 99.45 True local misassembly 13773934 13774586 535249 534597 CM091760.1 scf7180000184240 99.39 True indel: indel (> 5bp) 13772712 13773765 536464 535411 CM091760.1 scf7180000184240 99.53 True indel: indel (<= 5bp) 13770662 13772710 538513 536465 CM091760.1 scf7180000184240 99.71 True indel: indel (<= 5bp) 13769885 13770540 539292 538637 CM091760.1 scf7180000184240 99.24 True fake: scaffold gap size wrong estimation (local) 13768789 13769544 542190 541435 CM091760.1 scf7180000184240 98.81 True indel: indel (<= 5bp) 13767442 13768788 543540 542194 CM091760.1 scf7180000184240 99.55 True indel: indel (> 5bp) 13766356 13767025 544640 543971 CM091760.1 scf7180000184240 99.55 True indel: indel (<= 5bp) 13765743 13766354 545252 544641 CM091760.1 scf7180000184240 99.18 True indel: indel (> 5bp) 13764862 13765564 546142 545440 CM091760.1 scf7180000184240 99.72 True fake: scaffold gap size wrong estimation (local) 13763656 13764347 547349 546658 CM091760.1 scf7180000184240 99.71 True fake: scaffold gap size wrong estimation (local) 13756941 13762593 553833 548163 CM091760.1 scf7180000184240 99.08 True fake: scaffold gap size wrong estimation (local) 13752413 13756483 558208 554139 CM091760.1 scf7180000184240 99.34 True fake: scaffold gap size wrong estimation (local) 13585946 13752024 723502 558316 CM091760.1 scf7180000184240 97.97 True indel: indel (> 5bp) 13581894 13585921 727555 723536 CM091760.1 scf7180000184240 99.35 True fake: scaffold gap size wrong estimation (local) 13558759 13581830 750396 727647 CM091760.1 scf7180000184240 97.95 True fake: not a misassembly (possible transposable element) 1751034 1752187 751552 750397 CM091752.1 scf7180000184240 99.66 True fake: not a misassembly (possible transposable element) 13551455 13558899 759286 751853 CM091760.1 scf7180000184240 99.26 True fake: scaffold gap size wrong estimation (local) 13445688 13551293 865208 759400 CM091760.1 scf7180000184240 99.37 True indel: indel (> 5bp) 13410822 13445619 899728 865209 CM091760.1 scf7180000184240 98.23 True fake: scaffold gap size wrong estimation (local) 13366080 13410320 944333 900076 CM091760.1 scf7180000184240 99.4 True fake: scaffold gap size wrong estimation (local) 13204330 13365985 1104468 944429 CM091760.1 scf7180000184240 98.22 True fake: scaffold gap size wrong estimation (local) 13109003 13204071 1198119 1104656 CM091760.1 scf7180000184240 97.73 True fake: scaffold gap size wrong estimation (local) 13076093 13108656 1230934 1198357 CM091760.1 scf7180000184240 99.12 True fake: scaffold gap size wrong estimation (local) 12967695 13075912 1339142 1230989 CM091760.1 scf7180000184240 99.29 True indel: indel (> 5bp) 12953504 12967649 1353346 1339207 CM091760.1 scf7180000184240 99.32 True fake: scaffold gap size wrong estimation (local) 12931955 12953343 1374850 1353436 CM091760.1 scf7180000184240 98.99 True fake: scaffold gap size wrong estimation (local) 12872241 12931161 1433883 1375306 CM091760.1 scf7180000184240 98.44 True fake: scaffold gap size wrong estimation (local) 12805142 12870799 1500418 1434666 CM091760.1 scf7180000184240 99.21 True fake: scaffold gap size wrong estimation (local) 12789699 12804834 1515858 1500874 CM091760.1 scf7180000184240 98.37 True fake: scaffold gap size wrong estimation (local) 12781453 12789560 1524148 1516032 CM091760.1 scf7180000184240 99.32 True CONTIG scf7180000184240 1524361 misassembled 6575025 6578494 1 3467 CM091767.1 scf7180000184241 99.02 True indel: stretch of mismatches 6578521 6592469 3494 17458 CM091767.1 scf7180000184241 98.69 True local misassembly 6593326 6601538 17742 26061 CM091767.1 scf7180000184241 97.7 True fake: scaffold gap size wrong estimation (local) 6602537 6603209 26418 27090 CM091767.1 scf7180000184241 99.55 True fake: scaffold gap size wrong estimation (local) 6603227 6604210 27129 28112 CM091767.1 scf7180000184241 98.98 True fake: scaffold gap size wrong estimation (local) 6604719 6605314 28592 29187 CM091767.1 scf7180000184241 99.83 True fake: scaffold gap size wrong estimation (local) 6606713 6607849 30378 31514 CM091767.1 scf7180000184241 99.21 True fake: scaffold gap size wrong estimation (local) 6608001 6625154 31657 48416 CM091767.1 scf7180000184241 97.25 True fake: scaffold gap size wrong estimation (local) 6625256 6633478 48515 56598 CM091767.1 scf7180000184241 97.65 True fake: scaffold gap size wrong estimation (local) 6634283 6636070 57021 58808 CM091767.1 scf7180000184241 99.66 True fake: scaffold gap size wrong estimation (local) 6636672 6637725 59214 60267 CM091767.1 scf7180000184241 99.91 True local misassembly 6637726 6639790 60410 62474 CM091767.1 scf7180000184241 98.64 True indel: indel (> 5bp) 6639791 6640508 62483 63200 CM091767.1 scf7180000184241 99.3 True fake: scaffold gap size wrong estimation (local) 6644923 6648188 63221 66502 CM091767.1 scf7180000184241 98.6 True fake: scaffold gap size wrong estimation (local) 6648565 6649727 67232 68394 CM091767.1 scf7180000184241 99.14 True fake: scaffold gap size wrong estimation (local) 6649728 6650465 68414 69151 CM091767.1 scf7180000184241 99.59 True local misassembly 6652515 6653485 70327 71297 CM091767.1 scf7180000184241 99.49 True indel: indel (> 5bp) 6653486 6654380 71306 72200 CM091767.1 scf7180000184241 99.89 True fake: scaffold gap size wrong estimation (local) 6655930 6656505 73206 73781 CM091767.1 scf7180000184241 98.61 True local misassembly 6656893 6657487 73794 74388 CM091767.1 scf7180000184241 95.46 True indel: indel (<= 5bp) 6657488 6658151 74392 75055 CM091767.1 scf7180000184241 99.1 True indel: indel (> 5bp) 6658510 6660827 75424 77741 CM091767.1 scf7180000184241 99.65 True local misassembly 6661150 6663719 77785 80354 CM091767.1 scf7180000184241 98.48 True indel: indel (<= 5bp) 6663720 6664322 80356 80958 CM091767.1 scf7180000184241 95.36 True fake: scaffold gap size wrong estimation (local) 6664892 6666594 81290 82965 CM091767.1 scf7180000184241 96.96 True fake: scaffold gap size wrong estimation (local) 6668113 6670024 84047 85958 CM091767.1 scf7180000184241 99.32 True fake: scaffold gap size wrong estimation (local) 6670575 6671958 86346 87729 CM091767.1 scf7180000184241 99.49 True fake: scaffold gap size wrong estimation (local) 6673842 6674673 89208 90039 CM091767.1 scf7180000184241 98.8 True local misassembly 6675244 6676666 90379 91801 CM091767.1 scf7180000184241 98.81 True fake: scaffold gap size wrong estimation (local) 6676910 6677479 91921 92490 CM091767.1 scf7180000184241 99.47 True indel: indel (<= 5bp) 6677482 6678397 92491 93406 CM091767.1 scf7180000184241 98.25 True fake: scaffold gap size wrong estimation (local) 6679901 6680479 94097 94675 CM091767.1 scf7180000184241 99.31 True indel: indel (<= 5bp) 6680480 6682471 94678 96669 CM091767.1 scf7180000184241 99.35 True local misassembly 6682967 6684681 96938 98652 CM091767.1 scf7180000184241 98.89 True fake: not a misassembly (possible transposable element) 6640468 6642292 99169 100990 CM091767.1 scf7180000184241 99.34 True fake: not a misassembly (possible transposable element) 6686114 6714968 101011 129880 CM091767.1 scf7180000184241 99.17 True fake: scaffold gap size wrong estimation (local) 6715192 6718412 130108 133330 CM091767.1 scf7180000184241 99.63 True fake: not a misassembly (possible transposable element) 151847 152497 133351 134001 CM091752.1 scf7180000184241 97.39 True fake: not a misassembly (possible transposable element) 6719035 6720099 134503 135587 CM091767.1 scf7180000184241 97.6 True fake: scaffold gap size wrong estimation (local) 6720867 6730456 135771 145169 CM091767.1 scf7180000184241 96.15 True fake: scaffold gap size wrong estimation (local) 6731209 6735408 145525 149725 CM091767.1 scf7180000184241 99.24 True fake: not a misassembly (possible transposable element) 236904 237647 150757 150015 CM091752.1 scf7180000184241 98.12 True fake: not a misassembly (possible transposable element) 6735724 6736345 151007 151628 CM091767.1 scf7180000184241 99.04 True indel: indel (<= 5bp) 6736346 6737236 151630 152520 CM091767.1 scf7180000184241 99.55 True indel: indel (> 5bp) 6737246 6738347 152521 153622 CM091767.1 scf7180000184241 99.55 True fake: scaffold gap size wrong estimation (local) 6738493 6740062 153706 155275 CM091767.1 scf7180000184241 99.36 True local misassembly 6740797 6741358 155397 155958 CM091767.1 scf7180000184241 95.37 True indel: indel (> 5bp) 6741363 6744193 155970 158800 CM091767.1 scf7180000184241 99.43 True local misassembly 6745044 6746775 158927 160658 CM091767.1 scf7180000184241 99.6 True local misassembly 6746776 6747388 160902 161514 CM091767.1 scf7180000184241 98.86 True indel: indel (> 5bp) 6747397 6749697 161515 163815 CM091767.1 scf7180000184241 99.22 True fake: scaffold gap size wrong estimation (local) 6750208 6752371 164107 166270 CM091767.1 scf7180000184241 99.68 True indel: indel (<= 5bp) 6752372 6753372 166272 167272 CM091767.1 scf7180000184241 99.4 True indel: stretch of mismatches 6753438 6755135 167338 169035 CM091767.1 scf7180000184241 99.12 True indel: indel (<= 5bp) 6755139 6756875 169036 170772 CM091767.1 scf7180000184241 99.83 True fake: scaffold gap size wrong estimation (local) 6758163 6759374 171181 172392 CM091767.1 scf7180000184241 99.83 True indel: indel (> 5bp) 6759375 6760202 172408 173235 CM091767.1 scf7180000184241 99.15 True indel: indel (<= 5bp) 6760234 6761405 173270 174441 CM091767.1 scf7180000184241 98.04 True fake: scaffold gap size wrong estimation (local) 6761406 6762621 174476 175691 CM091767.1 scf7180000184241 99.75 True local misassembly 6762843 6764118 175692 176967 CM091767.1 scf7180000184241 97.81 True indel: indel (> 5bp) 6764532 6765403 177375 178246 CM091767.1 scf7180000184241 99.43 True indel: indel (<= 5bp) 6765616 6766514 178460 179358 CM091767.1 scf7180000184241 98.89 True indel: indel (> 5bp) 6766706 6767910 179562 180766 CM091767.1 scf7180000184241 99.59 True indel: indel (> 5bp) 6768183 6770590 181009 183407 CM091767.1 scf7180000184241 98.63 True fake: scaffold gap size wrong estimation (local) 6770676 6779929 183453 192643 CM091767.1 scf7180000184241 98.02 True fake: scaffold gap size wrong estimation (local) 6780271 6780796 192916 193441 CM091767.1 scf7180000184241 99.05 True indel: indel (<= 5bp) 6780976 6781509 193622 194155 CM091767.1 scf7180000184241 99.63 True indel: indel (> 5bp) 6781539 6782406 194179 195046 CM091767.1 scf7180000184241 99.77 True indel: indel (<= 5bp) 6782407 6783888 195048 196529 CM091767.1 scf7180000184241 99.66 True indel: indel (> 5bp) 6783990 6784812 196614 197436 CM091767.1 scf7180000184241 99.39 True local misassembly 6785631 6787943 197671 199983 CM091767.1 scf7180000184241 99.48 True fake: scaffold gap size wrong estimation (local) 6788374 6789531 200403 201560 CM091767.1 scf7180000184241 99.65 True indel: indel (<= 5bp) 6789532 6792575 201562 204605 CM091767.1 scf7180000184241 99.77 True indel: indel (> 5bp) 6793041 6793994 205058 206011 CM091767.1 scf7180000184241 99.9 True indel: indel (<= 5bp) 6793995 6794646 206015 206666 CM091767.1 scf7180000184241 99.54 True local misassembly 6795168 6796748 206667 208247 CM091767.1 scf7180000184241 99.75 True local misassembly 6796849 6797937 208248 209336 CM091767.1 scf7180000184241 97.34 True indel: indel (<= 5bp) 6797938 6798481 209340 209883 CM091767.1 scf7180000184241 99.26 True fake: scaffold gap size wrong estimation (local) 6799375 6800821 210665 212111 CM091767.1 scf7180000184241 99.72 True fake: scaffold gap size wrong estimation (local) 6800853 6812998 212212 224323 CM091767.1 scf7180000184241 98.03 True indel: indel (<= 5bp) 6813236 6824686 224560 235967 CM091767.1 scf7180000184241 96.82 True fake: scaffold gap size wrong estimation (local) 6824036 6827302 235989 239255 CM091767.1 scf7180000184241 99.6 True local misassembly 6827813 6828860 239426 240473 CM091767.1 scf7180000184241 99.81 True fake: scaffold gap size wrong estimation (local) 6829707 6849005 240703 259229 CM091767.1 scf7180000184241 95.82 True indel: indel (<= 5bp) 6849028 6869688 259254 279912 CM091767.1 scf7180000184241 99.53 True fake: scaffold gap size wrong estimation (local) 6871308 6873125 280973 282790 CM091767.1 scf7180000184241 99.89 True fake: scaffold gap size wrong estimation (local) 6874967 6876614 283882 285530 CM091767.1 scf7180000184241 97.35 True fake: scaffold gap size wrong estimation (local) 6877124 6878292 285922 287090 CM091767.1 scf7180000184241 99.57 True indel: indel (<= 5bp) 6878293 6879563 287095 288365 CM091767.1 scf7180000184241 99.29 True indel: indel (<= 5bp) 6879796 6881148 288593 289945 CM091767.1 scf7180000184241 99.41 True local misassembly 6881853 6882526 290289 290962 CM091767.1 scf7180000184241 99.55 True indel: indel (<= 5bp) 6882528 6883110 290963 291545 CM091767.1 scf7180000184241 98.46 True indel: indel (<= 5bp) 6883389 6884112 291826 292549 CM091767.1 scf7180000184241 99.59 True indel: indel (<= 5bp) 6884113 6884776 292552 293215 CM091767.1 scf7180000184241 99.25 True local misassembly 6885439 6886143 293596 294300 CM091767.1 scf7180000184241 99.43 True indel: indel (<= 5bp) 6886378 6887742 294540 295904 CM091767.1 scf7180000184241 99.34 True fake: scaffold gap size wrong estimation (local) 6888835 6890232 297515 298912 CM091767.1 scf7180000184241 99.71 True local misassembly 6890663 6893308 298913 301558 CM091767.1 scf7180000184241 98.68 True fake: scaffold gap size wrong estimation (local) 6893382 6894080 301623 302321 CM091767.1 scf7180000184241 98.71 True fake: scaffold gap size wrong estimation (local) 6894918 6896364 302929 304376 CM091767.1 scf7180000184241 98.96 True fake: scaffold gap size wrong estimation (local) 6896602 6940272 304453 347479 CM091767.1 scf7180000184241 98.01 True translocation, scaffold gap is present 3835418 3839236 347500 351318 CM091761.1 scf7180000184241 99.61 True local misassembly 3840251 3841056 351337 352142 CM091761.1 scf7180000184241 99.26 True indel: indel (<= 5bp) 3841186 3842160 352274 353248 CM091761.1 scf7180000184241 99.79 True fake: scaffold gap size wrong estimation (local) 3843052 3844206 354141 355295 CM091761.1 scf7180000184241 99.65 True fake: scaffold gap size wrong estimation (local) 3844451 3845373 355593 356515 CM091761.1 scf7180000184241 99.89 True local misassembly 3845893 3846526 357033 357666 CM091761.1 scf7180000184241 99.37 True fake: scaffold gap size wrong estimation (local) 3846775 3847369 357878 358472 CM091761.1 scf7180000184241 99.5 True indel: stretch of mismatches 3847841 3849353 358944 360456 CM091761.1 scf7180000184241 99.6 True fake: scaffold gap size wrong estimation (local) 3850845 3851481 361971 362607 CM091761.1 scf7180000184241 99.69 True indel: indel (<= 5bp) 3851482 3852284 362609 363411 CM091761.1 scf7180000184241 99.63 True local misassembly 3853046 3854361 364175 365490 CM091761.1 scf7180000184241 99.54 True local misassembly 3855139 3857586 366265 368712 CM091761.1 scf7180000184241 99.75 True indel: indel (> 5bp) 3857872 3858593 369008 369729 CM091761.1 scf7180000184241 99.72 True indel: indel (<= 5bp) 3859023 3859840 370161 370978 CM091761.1 scf7180000184241 99.63 True fake: scaffold gap size wrong estimation (local) 3860664 3862020 371659 373015 CM091761.1 scf7180000184241 98.82 True local misassembly 3862650 3863242 373427 374019 CM091761.1 scf7180000184241 95.95 True indel: indel (<= 5bp) 3863243 3864547 374022 375326 CM091761.1 scf7180000184241 99.62 True indel: indel (<= 5bp) 3864618 3865864 375392 376638 CM091761.1 scf7180000184241 99.76 True indel: indel (<= 5bp) 3865865 3866477 376641 377253 CM091761.1 scf7180000184241 99.51 True local misassembly 3867259 3868618 378038 379397 CM091761.1 scf7180000184241 99.56 True fake: scaffold gap size wrong estimation (local) 3870267 3871196 380832 381761 CM091761.1 scf7180000184241 99.25 True indel: indel (<= 5bp) 3871197 3872928 381764 383495 CM091761.1 scf7180000184241 99.36 True local misassembly 3873783 3876449 383664 386330 CM091761.1 scf7180000184241 99.51 True indel: indel (> 5bp) 3876900 3877574 386771 387445 CM091761.1 scf7180000184241 98.96 True indel: indel (> 5bp) 3877813 3878582 387691 388460 CM091761.1 scf7180000184241 99.35 True fake: scaffold gap size wrong estimation (local) 3879553 3881400 389200 391047 CM091761.1 scf7180000184241 99.46 True indel: indel (<= 5bp) 3881403 3881932 391052 391581 CM091761.1 scf7180000184241 99.62 True indel: indel (<= 5bp) 3881937 3882881 391587 392531 CM091761.1 scf7180000184241 99.47 True local misassembly 3883999 3886793 393045 395839 CM091761.1 scf7180000184241 99.53 True indel: indel (<= 5bp) 3886795 3888609 395840 397654 CM091761.1 scf7180000184241 99.5 True local misassembly 3889517 3891143 398564 400190 CM091761.1 scf7180000184241 99.26 True fake: scaffold gap size wrong estimation (local) 3893340 3894466 402147 403273 CM091761.1 scf7180000184241 98.76 True fake: scaffold gap size wrong estimation (local) 3895731 3904668 403874 412845 CM091761.1 scf7180000184241 98.79 True fake: not a misassembly (possible transposable element) 20832 21565 412846 413579 CM091754.1 scf7180000184241 100.0 True fake: not a misassembly (possible transposable element) 3904714 3913987 413685 422792 CM091761.1 scf7180000184241 97.01 True fake: scaffold gap size wrong estimation (local) 3914256 3999945 423014 508588 CM091761.1 scf7180000184241 99.25 True indel: indel (> 5bp) 4000099 4052987 508687 560164 CM091761.1 scf7180000184241 96.41 True local misassembly 4053806 4054718 560718 561630 CM091761.1 scf7180000184241 99.34 True indel: indel (<= 5bp) 4054719 4055635 561632 562548 CM091761.1 scf7180000184241 99.45 True indel: stretch of mismatches 4055949 4056488 562862 563401 CM091761.1 scf7180000184241 98.7 True fake: scaffold gap size wrong estimation (local) 4058083 4058689 564464 565070 CM091761.1 scf7180000184241 99.18 True indel: indel (<= 5bp) 4058692 4059444 565071 565823 CM091761.1 scf7180000184241 99.34 True indel: indel (<= 5bp) 4059897 4060810 566280 567193 CM091761.1 scf7180000184241 99.34 True indel: indel (<= 5bp) 4060811 4061428 567195 567812 CM091761.1 scf7180000184241 99.68 True fake: scaffold gap size wrong estimation (local) 4062327 4063614 568380 569667 CM091761.1 scf7180000184241 99.61 True indel: indel (<= 5bp) 4063959 4065584 570009 571634 CM091761.1 scf7180000184241 98.59 True fake: scaffold gap size wrong estimation (local) 4067523 4069365 573424 575266 CM091761.1 scf7180000184241 99.57 True indel: indel (<= 5bp) 4069367 4070761 575267 576661 CM091761.1 scf7180000184241 99.21 True indel: indel (<= 5bp) 4070762 4071377 576663 577278 CM091761.1 scf7180000184241 98.05 True indel: indel (<= 5bp) 4071380 4072450 577279 578349 CM091761.1 scf7180000184241 99.81 True indel: indel (<= 5bp) 4072451 4073289 578351 579189 CM091761.1 scf7180000184241 99.28 True relocation, inconsistency = 27166 4101434 4102119 580168 580851 CM091761.1 scf7180000184241 99.13 True fake: scaffold gap size wrong estimation (local) 4102224 4102929 580953 581658 CM091761.1 scf7180000184241 99.58 True indel: indel (<= 5bp) 4102930 4103765 581660 582495 CM091761.1 scf7180000184241 99.52 True fake: scaffold gap size wrong estimation (local) 4105032 4105897 583425 584290 CM091761.1 scf7180000184241 99.65 True indel: indel (<= 5bp) 4105898 4107091 584292 585485 CM091761.1 scf7180000184241 99.41 True indel: indel (> 5bp) 4107364 4109047 585751 587434 CM091761.1 scf7180000184241 99.05 True indel: indel (<= 5bp) 4109260 4111791 587642 590173 CM091761.1 scf7180000184241 99.92 True local misassembly 4112356 4113440 590725 591809 CM091761.1 scf7180000184241 99.72 True indel: indel (<= 5bp) 4113442 4114215 591810 592583 CM091761.1 scf7180000184241 100.0 True indel: indel (<= 5bp) 4114217 4114777 592584 593144 CM091761.1 scf7180000184241 99.82 True indel: indel (<= 5bp) 4114832 4115556 593197 593921 CM091761.1 scf7180000184241 99.72 True indel: indel (> 5bp) 4115566 4116157 593922 594513 CM091761.1 scf7180000184241 99.66 True indel: indel (<= 5bp) 4116159 4117466 594514 595821 CM091761.1 scf7180000184241 99.46 True indel: indel (<= 5bp) 4117738 4118888 596098 597248 CM091761.1 scf7180000184241 99.74 True indel: indel (> 5bp) 4119120 4120028 597494 598402 CM091761.1 scf7180000184241 99.56 True indel: stretch of mismatches 4120452 4121762 598826 600136 CM091761.1 scf7180000184241 99.16 True local misassembly 4122304 4122922 600677 601295 CM091761.1 scf7180000184241 99.84 True indel: indel (> 5bp) 4122932 4123466 601296 601830 CM091761.1 scf7180000184241 99.63 True indel: indel (<= 5bp) 4123751 4125378 602117 603744 CM091761.1 scf7180000184241 99.75 True local misassembly 4126454 4127659 604843 606048 CM091761.1 scf7180000184241 99.42 True indel: indel (<= 5bp) 4127660 4129900 606050 608290 CM091761.1 scf7180000184241 99.69 True indel: indel (<= 5bp) 4129902 4130962 608291 609351 CM091761.1 scf7180000184241 99.62 True local misassembly 4131749 4133726 609352 611329 CM091761.1 scf7180000184241 99.65 True local misassembly 4134676 4135373 611592 612289 CM091761.1 scf7180000184241 99.28 True indel: indel (<= 5bp) 4135374 4136295 612293 613214 CM091761.1 scf7180000184241 99.13 True indel: indel (<= 5bp) 4136296 4137451 613217 614372 CM091761.1 scf7180000184241 99.48 True fake: scaffold gap size wrong estimation (local) 4138399 4151669 615161 628037 CM091761.1 scf7180000184241 96.03 True fake: scaffold gap size wrong estimation (local) 4151859 4301798 628215 778011 CM091761.1 scf7180000184241 99.3 True indel: indel (<= 5bp) 4301923 4380797 778141 857942 CM091761.1 scf7180000184241 96.53 True fake: scaffold gap size wrong estimation (local) 4381203 4402005 858075 878942 CM091761.1 scf7180000184241 98.49 True relocation, scaffold gap is present, inconsistency = 209821 4612017 4619205 886427 879133 CM091761.1 scf7180000184241 98.27 True indel: indel (> 5bp) 4571237 4611947 927207 886506 CM091761.1 scf7180000184241 99.44 True fake: scaffold gap size wrong estimation (local) 4562461 4570981 935908 927401 CM091761.1 scf7180000184241 98.96 True indel: indel (> 5bp) 4561662 4562428 936716 935950 CM091761.1 scf7180000184241 99.48 True indel: indel (> 5bp) 4560574 4561177 937812 937209 CM091761.1 scf7180000184241 99.17 True local misassembly 4559408 4559923 938976 938461 CM091761.1 scf7180000184241 99.42 True local misassembly 4558018 4558896 940372 939494 CM091761.1 scf7180000184241 99.77 True indel: indel (> 5bp) 4556102 4557998 942269 940373 CM091761.1 scf7180000184241 99.74 True indel: indel (<= 5bp) 4553665 4555904 944704 942465 CM091761.1 scf7180000184241 99.2 True local misassembly 4550304 4552311 947217 945210 CM091761.1 scf7180000184241 99.75 True indel: indel (<= 5bp) 4549737 4550244 947786 947279 CM091761.1 scf7180000184241 100.0 True indel: indel (<= 5bp) 4549160 4549736 948364 947788 CM091761.1 scf7180000184241 99.65 True fake: scaffold gap size wrong estimation (local) 4535730 4548214 961647 949172 CM091761.1 scf7180000184241 99.32 True fake: scaffold gap size wrong estimation (local) 4532588 4535007 964369 961990 CM091761.1 scf7180000184241 96.78 True fake: scaffold gap size wrong estimation (local) 4531000 4531887 965296 964409 CM091761.1 scf7180000184241 99.55 True fake: scaffold gap size wrong estimation (local) 4528367 4528897 967636 967106 CM091761.1 scf7180000184241 98.68 True indel: indel (<= 5bp) 4527852 4528366 968153 967639 CM091761.1 scf7180000184241 99.03 True local misassembly 4521317 4526674 974677 969311 CM091761.1 scf7180000184241 99.27 True fake: scaffold gap size wrong estimation (local) 4516627 4520799 979303 975133 CM091761.1 scf7180000184241 98.9 True fake: scaffold gap size wrong estimation (local) 4505417 4516429 990506 979474 CM091761.1 scf7180000184241 99.47 True indel: indel (> 5bp) 4490086 4505315 1005775 990556 CM091761.1 scf7180000184241 99.28 True fake: scaffold gap size wrong estimation (local) 4486359 4489354 1009231 1006222 CM091761.1 scf7180000184241 98.83 True local misassembly 4483825 4484917 1011597 1010505 CM091761.1 scf7180000184241 99.45 True indel: indel (> 5bp) 4482866 4483824 1012566 1011608 CM091761.1 scf7180000184241 98.96 True fake: scaffold gap size wrong estimation (local) 4479471 4481695 1015546 1013280 CM091761.1 scf7180000184241 98.92 True fake: scaffold gap size wrong estimation (local) 4461064 4478475 1033948 1016233 CM091761.1 scf7180000184241 97.19 True CONTIG scf7180000184241 1033948 misassembled 7801221 7845796 44575 1 CM091755.1 scf7180000184242 99.78 True fake: scaffold gap size wrong estimation (local) 7741908 7800974 103797 44765 CM091755.1 scf7180000184242 98.85 True fake: scaffold gap size wrong estimation (local) 7724962 7741710 120647 103980 CM091755.1 scf7180000184242 98.84 True fake: scaffold gap size wrong estimation (local) 7705436 7724865 140131 120734 CM091755.1 scf7180000184242 95.59 True fake: scaffold gap size wrong estimation (local) 7675442 7705209 169976 140289 CM091755.1 scf7180000184242 98.51 True fake: scaffold gap size wrong estimation (local) 7603663 7674791 241183 170360 CM091755.1 scf7180000184242 98.45 True translocation, scaffold gap is present 1661216 1690847 241206 270860 CM091762.1 scf7180000184242 99.51 True fake: scaffold gap size wrong estimation (local) 1691323 1695782 271258 275736 CM091762.1 scf7180000184242 95.98 True fake: scaffold gap size wrong estimation (local) 1696905 1711352 276537 291007 CM091762.1 scf7180000184242 99.76 True fake: scaffold gap size wrong estimation (local) 1712105 1765988 291329 345128 CM091762.1 scf7180000184242 99.55 True fake: scaffold gap size wrong estimation (local) 1767245 1812639 345994 391365 CM091762.1 scf7180000184242 99.58 True indel: indel (> 5bp) 1812677 1819005 391430 397765 CM091762.1 scf7180000184242 99.7 True fake: scaffold gap size wrong estimation (local) 1819906 1930457 398426 510638 CM091762.1 scf7180000184242 98.3 True fake: not a misassembly (possible transposable element) 3238004 3238681 511366 510689 CM091752.1 scf7180000184242 100.0 True fake: not a misassembly (possible transposable element) 1930647 1981988 511417 562493 CM091762.1 scf7180000184242 99.11 True fake: scaffold gap size wrong estimation (local) 1982142 2077637 562796 657772 CM091762.1 scf7180000184242 99.17 True translocation 2364150 2371498 665130 657773 CM091754.1 scf7180000184242 98.96 True fake: scaffold gap size wrong estimation (local) 2352819 2364003 676995 665895 CM091754.1 scf7180000184242 98.07 True indel: indel (> 5bp) 2323890 2352790 705282 677057 CM091754.1 scf7180000184242 96.38 True fake: scaffold gap size wrong estimation (local) 2315991 2323781 713042 705420 CM091754.1 scf7180000184242 97.1 True indel: indel (> 5bp) 2311845 2315928 717165 713063 CM091754.1 scf7180000184242 98.73 True indel: indel (> 5bp) 2270792 2311816 757055 717187 CM091754.1 scf7180000184242 96.12 True fake: scaffold gap size wrong estimation (local) 2269389 2270534 758380 757235 CM091754.1 scf7180000184242 99.39 True indel: indel (> 5bp) 2268513 2269053 759245 758705 CM091754.1 scf7180000184242 99.63 True indel: indel (<= 5bp) 2267661 2268512 760098 759247 CM091754.1 scf7180000184242 98.71 True indel: indel (<= 5bp) 2264842 2267608 762914 760148 CM091754.1 scf7180000184242 99.1 True indel: indel (<= 5bp) 2264122 2264841 763637 762918 CM091754.1 scf7180000184242 99.44 True indel: indel (<= 5bp) 2263318 2264120 764440 763638 CM091754.1 scf7180000184242 99.63 True indel: indel (> 5bp) 2262582 2263302 765161 764441 CM091754.1 scf7180000184242 99.86 True indel: indel (<= 5bp) 2261267 2262312 766474 765429 CM091754.1 scf7180000184242 99.14 True fake: scaffold gap size wrong estimation (local) 2259467 2260618 769129 767978 CM091754.1 scf7180000184242 99.91 True local misassembly 2258330 2258946 770267 769651 CM091754.1 scf7180000184242 99.68 True fake: scaffold gap size wrong estimation (local) 2256930 2258329 771693 770294 CM091754.1 scf7180000184242 99.86 True fake: scaffold gap size wrong estimation (local) 2231923 2256117 796263 772145 CM091754.1 scf7180000184242 98.54 True fake: scaffold gap size wrong estimation (local) 2207755 2230993 819390 797128 CM091754.1 scf7180000184242 95.26 True indel: indel (> 5bp) 2189783 2207704 837143 819419 CM091754.1 scf7180000184242 98.5 True fake: scaffold gap size wrong estimation (local) 2174181 2188563 852198 837737 CM091754.1 scf7180000184242 99.02 True fake: scaffold gap size wrong estimation (local) 2148685 2173710 877536 852488 CM091754.1 scf7180000184242 99.8 True CONTIG scf7180000184242 877774 misassembled 340867 349252 1 8386 CM091761.1 scf7180000184243 99.58 True fake: scaffold gap size wrong estimation (local) 350214 399622 8894 58006 CM091761.1 scf7180000184243 99.02 True fake: not a misassembly (possible transposable element) 11468969 11469955 58041 59027 CM091759.1 scf7180000184243 100.0 True fake: not a misassembly (possible transposable element) 399576 411342 59028 70765 CM091761.1 scf7180000184243 99.63 True fake: scaffold gap size wrong estimation (local) 411906 436103 71053 95260 CM091761.1 scf7180000184243 99.82 True fake: scaffold gap size wrong estimation (local) 436547 438542 95710 97705 CM091761.1 scf7180000184243 99.95 True fake: scaffold gap size wrong estimation (local) 439729 454282 98922 112910 CM091761.1 scf7180000184243 95.87 True fake: scaffold gap size wrong estimation (local) 455237 587792 113485 245580 CM091761.1 scf7180000184243 99.49 True local misassembly 588253 629672 245596 286728 CM091761.1 scf7180000184243 99.19 True fake: scaffold gap size wrong estimation (local) 630243 702197 286997 358798 CM091761.1 scf7180000184243 99.74 True fake: scaffold gap size wrong estimation (local) 702412 786450 358977 442700 CM091761.1 scf7180000184243 99.46 True fake: scaffold gap size wrong estimation (local) 787820 795973 443667 451822 CM091761.1 scf7180000184243 99.91 True fake: scaffold gap size wrong estimation (local) 796204 846197 451984 501900 CM091761.1 scf7180000184243 98.09 True fake: scaffold gap size wrong estimation (local) 846361 852860 502064 508604 CM091761.1 scf7180000184243 99.68 True fake: scaffold gap size wrong estimation (local) 853142 857411 508767 513034 CM091761.1 scf7180000184243 99.95 True fake: scaffold gap size wrong estimation (local) 857980 902584 513318 557903 CM091761.1 scf7180000184243 99.83 True fake: scaffold gap size wrong estimation (local) 903652 926206 558417 580935 CM091761.1 scf7180000184243 99.77 True fake: scaffold gap size wrong estimation (local) 926945 941220 581378 595641 CM091761.1 scf7180000184243 99.62 True fake: scaffold gap size wrong estimation (local) 941498 989066 595925 643754 CM091761.1 scf7180000184243 99.2 True fake: scaffold gap size wrong estimation (local) 989204 1038998 643861 693651 CM091761.1 scf7180000184243 99.71 True fake: scaffold gap size wrong estimation (local) 1040282 1047753 693885 701348 CM091761.1 scf7180000184243 99.44 True fake: scaffold gap size wrong estimation (local) 1048400 1063785 701415 716821 CM091761.1 scf7180000184243 99.86 True fake: scaffold gap size wrong estimation (local) 1064348 1066876 717260 719788 CM091761.1 scf7180000184243 99.96 True indel: indel (<= 5bp) 1067313 1067988 720223 720898 CM091761.1 scf7180000184243 100.0 True local misassembly 1068405 1069072 720899 721566 CM091761.1 scf7180000184243 97.01 True fake: scaffold gap size wrong estimation (local) 1069073 1069732 721618 722277 CM091761.1 scf7180000184243 99.85 True fake: scaffold gap size wrong estimation (local) 1070519 1082579 722996 735524 CM091761.1 scf7180000184243 96.28 True fake: scaffold gap size wrong estimation (local) 1083253 1110298 735700 762974 CM091761.1 scf7180000184243 97.98 True fake: scaffold gap size wrong estimation (local) 1111583 1112446 764412 765275 CM091761.1 scf7180000184243 100.0 True fake: scaffold gap size wrong estimation (local) 1114868 1116191 766884 768208 CM091761.1 scf7180000184243 99.92 True fake: scaffold gap size wrong estimation (local) 1116369 1148307 768623 800149 CM091761.1 scf7180000184243 98.26 True fake: scaffold gap size wrong estimation (local) 1148509 1359383 800232 1010555 CM091761.1 scf7180000184243 99.5 True fake: scaffold gap size wrong estimation (local) 1359836 1376987 1010710 1027306 CM091761.1 scf7180000184243 96.6 True fake: scaffold gap size wrong estimation (local) 1377649 1379387 1027907 1029646 CM091761.1 scf7180000184243 99.83 True fake: scaffold gap size wrong estimation (local) 1380289 1401020 1030371 1051125 CM091761.1 scf7180000184243 99.63 True fake: scaffold gap size wrong estimation (local) 1404602 1405174 1052477 1053051 CM091761.1 scf7180000184243 97.57 True fake: scaffold gap size wrong estimation (local) 1405428 1415581 1053322 1063469 CM091761.1 scf7180000184243 99.76 True fake: scaffold gap size wrong estimation (local) 1418259 1418817 1065113 1065672 CM091761.1 scf7180000184243 99.64 True fake: scaffold gap size wrong estimation (local) 1420135 1423400 1066751 1070015 CM091761.1 scf7180000184243 99.94 True fake: scaffold gap size wrong estimation (local) 1423824 1432639 1070171 1078987 CM091761.1 scf7180000184243 99.91 True fake: scaffold gap size wrong estimation (local) 1433371 1433905 1079191 1079725 CM091761.1 scf7180000184243 100.0 True fake: scaffold gap size wrong estimation (local) 1434566 1450772 1079973 1096422 CM091761.1 scf7180000184243 98.56 True fake: scaffold gap size wrong estimation (local) 1452304 1457597 1097199 1102517 CM091761.1 scf7180000184243 99.3 True fake: not a misassembly (possible transposable element) 782184 783785 1102553 1104150 CM091764.1 scf7180000184243 99.5 True fake: not a misassembly (possible transposable element) 1458371 1459070 1104151 1104862 CM091761.1 scf7180000184243 96.31 True translocation, scaffold gap is present 783711 786703 1104898 1107889 CM091764.1 scf7180000184243 99.97 True fake: scaffold gap size wrong estimation (local) 786615 787687 1108515 1109587 CM091764.1 scf7180000184243 99.35 True local misassembly 787848 788475 1109588 1110215 CM091764.1 scf7180000184243 96.66 True fake: scaffold gap size wrong estimation (local) 792072 792933 1110920 1111783 CM091764.1 scf7180000184243 99.31 True fake: not a misassembly (possible transposable element) 2872520 2874545 1114038 1111980 CM091752.1 scf7180000184243 99.31 True fake: not a misassembly (possible transposable element) 793390 797537 1116982 1121129 CM091764.1 scf7180000184243 99.98 True fake: scaffold gap size wrong estimation (local) 797786 812860 1121307 1136120 CM091764.1 scf7180000184243 97.93 True fake: scaffold gap size wrong estimation (local) 813712 815463 1136756 1138506 CM091764.1 scf7180000184243 99.94 True fake: scaffold gap size wrong estimation (local) 816409 819229 1139871 1142691 CM091764.1 scf7180000184243 99.96 True fake: not a misassembly (possible transposable element) 2393445 2394649 1143508 1144708 CM091760.1 scf7180000184243 99.49 True fake: not a misassembly (possible transposable element) 815510 816037 1145129 1145656 CM091764.1 scf7180000184243 99.81 True fake: scaffold gap size wrong estimation (local) 819482 821771 1146339 1148618 CM091764.1 scf7180000184243 99.38 True fake: not a misassembly (possible transposable element) 2395274 2395952 1148669 1149341 CM091760.1 scf7180000184243 98.94 True fake: not a misassembly (possible transposable element) 822075 827907 1150058 1155885 CM091764.1 scf7180000184243 99.71 True fake: scaffold gap size wrong estimation (local) 828636 837598 1156145 1165102 CM091764.1 scf7180000184243 99.84 True fake: scaffold gap size wrong estimation (local) 838609 852542 1165640 1179793 CM091764.1 scf7180000184243 98.33 True fake: scaffold gap size wrong estimation (local) 852728 854564 1180193 1182028 CM091764.1 scf7180000184243 99.78 True fake: scaffold gap size wrong estimation (local) 855627 861113 1183288 1188774 CM091764.1 scf7180000184243 99.84 True fake: scaffold gap size wrong estimation (local) 861897 864236 1189474 1191813 CM091764.1 scf7180000184243 99.91 True fake: scaffold gap size wrong estimation (local) 864423 872974 1191945 1200161 CM091764.1 scf7180000184243 95.78 True fake: scaffold gap size wrong estimation (local) 873460 874634 1200216 1201390 CM091764.1 scf7180000184243 99.74 True fake: scaffold gap size wrong estimation (local) 874635 877603 1202092 1205060 CM091764.1 scf7180000184243 99.29 True indel: indel (> 5bp) 877604 879372 1205073 1206841 CM091764.1 scf7180000184243 99.15 True fake: scaffold gap size wrong estimation (local) 881609 886549 1208193 1213290 CM091764.1 scf7180000184243 97.22 True translocation, scaffold gap is present 4614570 4617641 1213648 1216719 CM091754.1 scf7180000184243 100.0 True fake: scaffold gap size wrong estimation (local) 4621464 4625311 1218094 1221961 CM091754.1 scf7180000184243 99.82 True fake: scaffold gap size wrong estimation (local) 4625468 4626209 1222187 1222928 CM091754.1 scf7180000184243 100.0 True translocation, scaffold gap is present 10872809 10879565 1223006 1229578 CM091765.1 scf7180000184243 96.71 True fake: scaffold gap size wrong estimation (local) 10880021 10885416 1229803 1235040 CM091765.1 scf7180000184243 96.84 True fake: scaffold gap size wrong estimation (local) 10886063 10887575 1235604 1237116 CM091765.1 scf7180000184243 99.93 True CONTIG scf7180000184243 1237116 misassembled 7745417 7753469 8144 1 CM091762.1 scf7180000184244 98.25 True indel: indel (<= 5bp) 7713934 7745343 39516 8220 CM091762.1 scf7180000184244 98.32 True fake: scaffold gap size wrong estimation (local) 7687605 7713823 65624 39687 CM091762.1 scf7180000184244 96.83 True fake: scaffold gap size wrong estimation (local) 7682061 7687357 71143 65851 CM091762.1 scf7180000184244 99.06 True fake: scaffold gap size wrong estimation (local) 7664087 7681809 88665 71268 CM091762.1 scf7180000184244 97.0 True local misassembly 7660402 7663944 92264 88666 CM091762.1 scf7180000184244 97.69 True fake: scaffold gap size wrong estimation (local) 7646130 7660110 106360 92603 CM091762.1 scf7180000184244 96.38 True fake: scaffold gap size wrong estimation (local) 7642765 7643564 108180 107381 CM091762.1 scf7180000184244 99.38 True local misassembly 7640082 7641878 110868 109072 CM091762.1 scf7180000184244 99.61 True indel: indel (<= 5bp) 7639311 7640081 111643 110873 CM091762.1 scf7180000184244 99.48 True indel: indel (> 5bp) 7638543 7639226 112327 111644 CM091762.1 scf7180000184244 99.27 True indel: indel (> 5bp) 7637851 7638464 113028 112415 CM091762.1 scf7180000184244 99.19 True indel: indel (> 5bp) 7636304 7637486 114581 113399 CM091762.1 scf7180000184244 99.92 True local misassembly 7634413 7634930 115859 115342 CM091762.1 scf7180000184244 99.61 True indel: indel (<= 5bp) 7633670 7634299 116598 115969 CM091762.1 scf7180000184244 99.84 True fake: scaffold gap size wrong estimation (local) 7632167 7633511 118126 116782 CM091762.1 scf7180000184244 99.7 True indel: indel (<= 5bp) 7630433 7631675 119864 118622 CM091762.1 scf7180000184244 99.52 True indel: indel (<= 5bp) 7629895 7630429 120399 119865 CM091762.1 scf7180000184244 99.25 True fake: scaffold gap size wrong estimation (local) 7616672 7629587 133657 120730 CM091762.1 scf7180000184244 99.01 True local misassembly 7615032 7615696 135356 134692 CM091762.1 scf7180000184244 100.0 True local misassembly 7613415 7613978 136975 136412 CM091762.1 scf7180000184244 99.11 True indel: indel (<= 5bp) 7612797 7613412 137591 136976 CM091762.1 scf7180000184244 98.86 True indel: indel (<= 5bp) 7611397 7612796 138992 137593 CM091762.1 scf7180000184244 99.71 True indel: indel (<= 5bp) 7610617 7611396 139773 138994 CM091762.1 scf7180000184244 96.79 True local misassembly 7609590 7610223 140512 139879 CM091762.1 scf7180000184244 99.37 True indel: indel (> 5bp) 7607763 7609331 142326 140758 CM091762.1 scf7180000184244 99.43 True indel: indel (<= 5bp) 7607003 7607758 143082 142327 CM091762.1 scf7180000184244 99.6 True indel: indel (<= 5bp) 7606218 7607002 143871 143087 CM091762.1 scf7180000184244 96.18 True local misassembly 7601966 7605348 147747 144365 CM091762.1 scf7180000184244 99.2 True indel: indel (<= 5bp) 7600812 7601715 148904 148001 CM091762.1 scf7180000184244 99.67 True indel: indel (> 5bp) 7599532 7600691 150130 148971 CM091762.1 scf7180000184244 99.14 True indel: indel (<= 5bp) 7598614 7599529 151046 150131 CM091762.1 scf7180000184244 99.56 True fake: scaffold gap size wrong estimation (local) 7594670 7596797 154796 152669 CM091762.1 scf7180000184244 99.67 True fake: scaffold gap size wrong estimation (local) 7593531 7594165 155775 155141 CM091762.1 scf7180000184244 99.06 True local misassembly 7591870 7592866 157430 156434 CM091762.1 scf7180000184244 99.7 True local misassembly 7588187 7590804 160426 157820 CM091762.1 scf7180000184244 98.55 True fake: scaffold gap size wrong estimation (local) 7574557 7587959 173994 160620 CM091762.1 scf7180000184244 98.96 True indel: indel (> 5bp) 7545556 7574545 202403 173998 CM091762.1 scf7180000184244 97.02 True fake: scaffold gap size wrong estimation (local) 7541617 7545501 206372 202459 CM091762.1 scf7180000184244 98.76 True fake: scaffold gap size wrong estimation (local) 7500412 7541378 247687 206681 CM091762.1 scf7180000184244 99.67 True fake: scaffold gap size wrong estimation (local) 7472770 7500169 275180 247919 CM091762.1 scf7180000184244 99.03 True indel: indel (> 5bp) 7423570 7472727 324420 275208 CM091762.1 scf7180000184244 99.75 True local misassembly 7384561 7422990 363639 325208 CM091762.1 scf7180000184244 99.92 True local misassembly 7323678 7383227 424129 364988 CM091762.1 scf7180000184244 99.08 True fake: scaffold gap size wrong estimation (local) 7311471 7323552 436277 424241 CM091762.1 scf7180000184244 98.47 True fake: scaffold gap size wrong estimation (local) 7240386 7311315 507721 436787 CM091762.1 scf7180000184244 99.47 True fake: scaffold gap size wrong estimation (local) 7229938 7240125 517991 507848 CM091762.1 scf7180000184244 98.66 True fake: scaffold gap size wrong estimation (local) 7224694 7229814 523206 518116 CM091762.1 scf7180000184244 98.02 True fake: scaffold gap size wrong estimation (local) 7222473 7224365 525181 523277 CM091762.1 scf7180000184244 97.7 True fake: scaffold gap size wrong estimation (local) 7220315 7221331 527305 526289 CM091762.1 scf7180000184244 99.8 True indel: indel (> 5bp) 7219315 7219925 528317 527707 CM091762.1 scf7180000184244 99.51 True indel: indel (<= 5bp) 7218762 7219314 528871 528319 CM091762.1 scf7180000184244 99.28 True fake: scaffold gap size wrong estimation (local) 7217042 7217937 530216 529321 CM091762.1 scf7180000184244 99.55 True indel: indel (<= 5bp) 7216027 7217041 531232 530218 CM091762.1 scf7180000184244 100.0 True indel: indel (<= 5bp) 7215060 7216011 532201 531250 CM091762.1 scf7180000184244 99.89 True fake: scaffold gap size wrong estimation (local) 7213436 7214384 533638 532690 CM091762.1 scf7180000184244 99.26 True indel: indel (<= 5bp) 7211732 7213435 535343 533640 CM091762.1 scf7180000184244 99.65 True indel: indel (<= 5bp) 7210971 7211731 536105 535345 CM091762.1 scf7180000184244 100.0 True indel: indel (<= 5bp) 7210327 7210970 536750 536107 CM091762.1 scf7180000184244 96.89 True fake: scaffold gap size wrong estimation (local) 7208543 7209764 538223 537002 CM091762.1 scf7180000184244 99.75 True fake: scaffold gap size wrong estimation (local) 7182328 7208093 564191 538649 CM091762.1 scf7180000184244 98.55 True indel: indel (> 5bp) 7168939 7182264 577545 564239 CM091762.1 scf7180000184244 99.06 True fake: scaffold gap size wrong estimation (local) 7161217 7168899 585481 577829 CM091762.1 scf7180000184244 98.82 True fake: scaffold gap size wrong estimation (local) 7076603 7161116 670251 585570 CM091762.1 scf7180000184244 99.24 True indel: indel (> 5bp) 7062205 7076393 684815 670477 CM091762.1 scf7180000184244 98.76 True fake: scaffold gap size wrong estimation (local) 7059337 7061252 687582 685667 CM091762.1 scf7180000184244 99.69 True local misassembly 7054130 7055418 689098 687810 CM091762.1 scf7180000184244 99.07 True indel: indel (> 5bp) 7052867 7054067 690372 689172 CM091762.1 scf7180000184244 99.92 True indel: indel (<= 5bp) 7052104 7052855 691134 690383 CM091762.1 scf7180000184244 99.2 True indel: indel (> 5bp) 7047341 7052103 695904 691142 CM091762.1 scf7180000184244 99.6 True indel: indel (<= 5bp) 7044683 7047340 698565 695908 CM091762.1 scf7180000184244 99.62 True local misassembly 7041418 7043670 701837 699585 CM091762.1 scf7180000184244 99.56 True indel: indel (<= 5bp) 7039841 7041417 703415 701839 CM091762.1 scf7180000184244 98.73 True indel: indel (<= 5bp) 7032926 7039838 710328 703416 CM091762.1 scf7180000184244 99.78 True indel: indel (> 5bp) 7031562 7032458 711686 710790 CM091762.1 scf7180000184244 99.67 True local misassembly 7029345 7030685 713910 712570 CM091762.1 scf7180000184244 99.78 True indel: indel (<= 5bp) 7028378 7029343 714876 713911 CM091762.1 scf7180000184244 98.86 True indel: indel (<= 5bp) 7027740 7028341 715516 714915 CM091762.1 scf7180000184244 99.83 True indel: indel (> 5bp) 7026489 7027571 716755 715673 CM091762.1 scf7180000184244 99.91 True indel: indel (<= 5bp) 7025838 7026488 717407 716757 CM091762.1 scf7180000184244 100.0 True indel: indel (<= 5bp) 7024448 7025727 718800 717521 CM091762.1 scf7180000184244 99.61 True indel: indel (> 5bp) 7023650 7024327 719622 718945 CM091762.1 scf7180000184244 99.85 True indel: indel (<= 5bp) 7021706 7023649 721567 719624 CM091762.1 scf7180000184244 99.79 True indel: stretch of mismatches 7020716 7021336 722557 721937 CM091762.1 scf7180000184244 99.84 True indel: indel (<= 5bp) 7019088 7020349 724184 722923 CM091762.1 scf7180000184244 99.52 True indel: indel (> 5bp) 7018550 7019081 724716 724185 CM091762.1 scf7180000184244 99.44 True indel: indel (> 5bp) 7016660 7018170 726616 725106 CM091762.1 scf7180000184244 99.67 True indel: indel (<= 5bp) 7015702 7016589 727576 726689 CM091762.1 scf7180000184244 99.89 True fake: scaffold gap size wrong estimation (local) 6918026 7015145 824828 727881 CM091762.1 scf7180000184244 99.06 True fake: scaffold gap size wrong estimation (local) 6911537 6917459 831108 825112 CM091762.1 scf7180000184244 99.01 True fake: scaffold gap size wrong estimation (local) 6883615 6910868 858745 831469 CM091762.1 scf7180000184244 99.1 True fake: scaffold gap size wrong estimation (local) 6780340 6883216 960722 858998 CM091762.1 scf7180000184244 98.28 True fake: scaffold gap size wrong estimation (local) 6650345 6780169 1090816 960847 CM091762.1 scf7180000184244 99.55 True fake: scaffold gap size wrong estimation (local) 6632927 6650192 1108190 1090965 CM091762.1 scf7180000184244 99.3 True fake: scaffold gap size wrong estimation (local) 6609894 6631724 1130767 1108921 CM091762.1 scf7180000184244 99.51 True fake: scaffold gap size wrong estimation (local) 6348317 6609664 1391981 1130911 CM091762.1 scf7180000184244 99.46 True fake: scaffold gap size wrong estimation (local) 6345674 6347945 1394531 1392264 CM091762.1 scf7180000184244 97.01 True fake: scaffold gap size wrong estimation (local) 6341664 6344082 1398094 1395706 CM091762.1 scf7180000184244 95.77 True fake: scaffold gap size wrong estimation (local) 6323295 6341534 1416211 1398431 CM091762.1 scf7180000184244 96.37 True fake: scaffold gap size wrong estimation (local) 6319534 6322094 1419091 1416501 CM091762.1 scf7180000184244 98.87 True fake: scaffold gap size wrong estimation (local) 6318451 6319390 1420488 1419549 CM091762.1 scf7180000184244 99.47 True fake: scaffold gap size wrong estimation (local) 6317077 6318003 1421463 1420537 CM091762.1 scf7180000184244 99.46 True fake: scaffold gap size wrong estimation (local) 6314690 6316414 1423835 1422111 CM091762.1 scf7180000184244 99.3 True fake: scaffold gap size wrong estimation (local) 6241419 6314246 1496979 1424097 CM091762.1 scf7180000184244 99.52 True fake: scaffold gap size wrong estimation (local) 6236954 6240326 1501081 1497710 CM091762.1 scf7180000184244 99.56 True fake: scaffold gap size wrong estimation (local) 6232807 6236553 1504996 1501257 CM091762.1 scf7180000184244 99.33 True fake: scaffold gap size wrong estimation (local) 6229566 6232386 1508063 1505255 CM091762.1 scf7180000184244 99.04 True fake: scaffold gap size wrong estimation (local) 6208829 6229402 1528631 1508205 CM091762.1 scf7180000184244 98.46 True fake: scaffold gap size wrong estimation (local) 6192139 6208722 1545186 1528726 CM091762.1 scf7180000184244 98.14 True fake: scaffold gap size wrong estimation (local) 6188321 6191918 1549441 1545849 CM091762.1 scf7180000184244 99.0 True indel: indel (<= 5bp) 6163087 6188220 1574570 1549545 CM091762.1 scf7180000184244 98.88 True fake: scaffold gap size wrong estimation (local) 6152678 6162842 1585013 1574845 CM091762.1 scf7180000184244 99.56 True fake: scaffold gap size wrong estimation (local) 6137829 6151947 1599479 1585354 CM091762.1 scf7180000184244 99.72 True fake: scaffold gap size wrong estimation (local) 6136801 6137427 1600470 1599840 CM091762.1 scf7180000184244 98.58 True fake: scaffold gap size wrong estimation (local) 6129716 6136656 1607519 1600579 CM091762.1 scf7180000184244 99.78 True indel: indel (<= 5bp) 6124829 6129714 1612405 1607520 CM091762.1 scf7180000184244 99.73 True indel: indel (> 5bp) 6123526 6124811 1613691 1612406 CM091762.1 scf7180000184244 99.61 True indel: indel (<= 5bp) 6122894 6123525 1614324 1613693 CM091762.1 scf7180000184244 99.37 True indel: indel (<= 5bp) 6121742 6122893 1615477 1614326 CM091762.1 scf7180000184244 99.22 True indel: indel (<= 5bp) 6117571 6121740 1619647 1615478 CM091762.1 scf7180000184244 99.76 True indel: stretch of mismatches 6116761 6117383 1620457 1619835 CM091762.1 scf7180000184244 99.2 True indel: indel (> 5bp) 6115716 6116555 1621494 1620655 CM091762.1 scf7180000184244 99.64 True indel: indel (<= 5bp) 6114916 6115482 1622292 1621726 CM091762.1 scf7180000184244 99.65 True indel: indel (<= 5bp) 6114241 6114797 1622969 1622413 CM091762.1 scf7180000184244 99.82 True indel: indel (> 5bp) 6113231 6114240 1623985 1622976 CM091762.1 scf7180000184244 99.41 True indel: indel (<= 5bp) 6108961 6112985 1628257 1624233 CM091762.1 scf7180000184244 99.8 True local misassembly 5930759 6103495 1803940 1630711 CM091762.1 scf7180000184244 99.19 True indel: indel (> 5bp) 5928978 5930466 1805725 1804241 CM091762.1 scf7180000184244 99.6 True fake: scaffold gap size wrong estimation (local) 5909601 5928719 1825112 1805965 CM091762.1 scf7180000184244 99.4 True CONTIG scf7180000184244 1825150 correct 4773773 4774283 1 511 CM091754.1 scf7180000184245 100.0 True fake: scaffold gap size wrong estimation (local) 4774995 4775676 1165 1845 CM091754.1 scf7180000184245 99.27 True fake: scaffold gap size wrong estimation (local) 4775785 4779764 1933 5883 CM091754.1 scf7180000184245 99.26 True fake: scaffold gap size wrong estimation (local) 4781278 4782491 6703 7916 CM091754.1 scf7180000184245 98.19 True inversion, scaffold gap is present 4771863 4772578 10585 9870 CM091754.1 scf7180000184245 99.44 True fake: scaffold gap size wrong estimation (local) 4769418 4770947 12983 11454 CM091754.1 scf7180000184245 100.0 True translocation, scaffold gap is present 15511501 15512092 21661 22252 CM091757.1 scf7180000184245 100.0 True fake: scaffold gap size wrong estimation (local) 15512723 15517295 22677 27287 CM091757.1 scf7180000184245 96.89 True fake: scaffold gap size wrong estimation (local) 15518382 15521240 29074 31923 CM091757.1 scf7180000184245 99.3 True fake: scaffold gap size wrong estimation (local) 15522469 15523073 33112 33715 CM091757.1 scf7180000184245 97.53 True fake: scaffold gap size wrong estimation (local) 15523262 15525046 34771 36556 CM091757.1 scf7180000184245 99.72 True translocation, scaffold gap is present 4024840 4028003 40106 36977 CM091752.1 scf7180000184245 97.47 True fake: not a misassembly (possible transposable element) 4934525 4936175 40107 41756 CM091759.1 scf7180000184245 99.82 True fake: not a misassembly (possible transposable element) 4021069 4024511 45219 41791 CM091752.1 scf7180000184245 96.05 True translocation, scaffold gap is present 15534061 15534736 46027 46702 CM091757.1 scf7180000184245 100.0 True fake: not a misassembly (possible transposable element) 11309174 11310388 47967 46753 CM091765.1 scf7180000184245 99.84 True fake: not a misassembly (possible transposable element) 15535215 15536374 48018 49178 CM091757.1 scf7180000184245 99.66 True translocation, scaffold gap is present 11304704 11308853 53349 49199 CM091765.1 scf7180000184245 99.93 True fake: scaffold gap size wrong estimation (local) 11300300 11303664 57926 54561 CM091765.1 scf7180000184245 99.85 True translocation, scaffold gap is present 15884027 15885619 57954 59547 CM091757.1 scf7180000184245 99.87 True relocation, inconsistency = -347000 15538620 15539210 59548 60138 CM091757.1 scf7180000184245 98.82 True translocation, scaffold gap is present 11299418 11300368 61109 60159 CM091765.1 scf7180000184245 99.68 True fake: not a misassembly (possible transposable element) 11356535 11357254 61650 62369 CM091765.1 scf7180000184245 99.58 True fake: not a misassembly (possible transposable element) 11297901 11298569 63136 62468 CM091765.1 scf7180000184245 100.0 True fake: scaffold gap size wrong estimation (local) 11296807 11297447 64364 63724 CM091765.1 scf7180000184245 99.84 True fake: not a misassembly (possible transposable element) 15886410 15888765 64562 66917 CM091757.1 scf7180000184245 99.87 True fake: not a misassembly (possible transposable element) 11294064 11294600 68209 67673 CM091765.1 scf7180000184245 100.0 True translocation, scaffold gap is present 4015496 4016198 68962 68260 CM091752.1 scf7180000184245 95.16 True fake: scaffold gap size wrong estimation (local) 4013308 4014675 70900 69533 CM091752.1 scf7180000184245 100.0 True translocation, scaffold gap is present 15881665 15883033 73911 72515 CM091757.1 scf7180000184245 99.27 True translocation, scaffold gap is present 11265926 11266468 77580 77038 CM091765.1 scf7180000184245 100.0 True fake: scaffold gap size wrong estimation (local) 11257920 11265451 84972 77601 CM091765.1 scf7180000184245 97.66 True fake: scaffold gap size wrong estimation (local) 11255291 11257398 87785 85679 CM091765.1 scf7180000184245 99.62 True fake: scaffold gap size wrong estimation (local) 11249753 11254711 93036 87996 CM091765.1 scf7180000184245 98.1 True fake: scaffold gap size wrong estimation (local) 11246864 11248968 96156 94064 CM091765.1 scf7180000184245 96.26 True translocation, scaffold gap is present 1476431 1477055 96919 96295 CM091764.1 scf7180000184245 99.52 True fake: not a misassembly (possible transposable element) 8916090 8917348 98075 99327 CM091767.1 scf7180000184245 96.6 True fake: not a misassembly (possible transposable element) 1474756 1475650 100333 99439 CM091764.1 scf7180000184245 97.77 True local misassembly 1473516 1474755 102090 100851 CM091764.1 scf7180000184245 98.79 True fake: scaffold gap size wrong estimation (local) 1470938 1473029 104689 102598 CM091764.1 scf7180000184245 100.0 True translocation, scaffold gap is present 8918464 8919651 104740 105933 CM091767.1 scf7180000184245 97.99 True translocation, scaffold gap is present 11234490 11236043 107592 106039 CM091765.1 scf7180000184245 100.0 True translocation, scaffold gap is present 1464587 1470814 113840 107613 CM091764.1 scf7180000184245 99.94 True indel: indel (> 5bp) 1462903 1464123 115531 114311 CM091764.1 scf7180000184245 98.61 True fake: scaffold gap size wrong estimation (local) 1460454 1461340 117863 116976 CM091764.1 scf7180000184245 98.99 True fake: scaffold gap size wrong estimation (local) 1456471 1459016 121205 118686 CM091764.1 scf7180000184245 98.83 True translocation, scaffold gap is present 16280071 16308415 121268 149818 CM091751.1 scf7180000184245 99.36 True fake: scaffold gap size wrong estimation (local) 16308549 16310432 149908 151828 CM091751.1 scf7180000184245 98.79 True fake: scaffold gap size wrong estimation (local) 16310709 16311724 152049 153064 CM091751.1 scf7180000184245 99.41 True local misassembly 16312637 16313754 153687 154804 CM091751.1 scf7180000184245 99.28 True local misassembly 16314642 16315781 155689 156828 CM091751.1 scf7180000184245 99.74 True fake: scaffold gap size wrong estimation (local) 16316037 16317356 156960 158279 CM091751.1 scf7180000184245 99.47 True fake: scaffold gap size wrong estimation (local) 16319506 16439433 160156 279902 CM091751.1 scf7180000184245 99.53 True fake: scaffold gap size wrong estimation (local) 16439549 16457124 280002 297878 CM091751.1 scf7180000184245 98.13 True fake: scaffold gap size wrong estimation (local) 16457675 16475462 298428 316253 CM091751.1 scf7180000184245 99.34 True fake: scaffold gap size wrong estimation (local) 16475579 16496488 316664 337362 CM091751.1 scf7180000184245 98.33 True fake: scaffold gap size wrong estimation (local) 16496758 16523819 337544 364632 CM091751.1 scf7180000184245 99.63 True local misassembly 16524073 16550571 364726 391241 CM091751.1 scf7180000184245 99.62 True indel: indel (> 5bp) 16550595 16683324 391275 523165 CM091751.1 scf7180000184245 99.04 True fake: scaffold gap size wrong estimation (local) 16683976 16705421 523498 545048 CM091751.1 scf7180000184245 99.58 True fake: scaffold gap size wrong estimation (local) 16705531 16794926 545135 634377 CM091751.1 scf7180000184245 99.6 True fake: scaffold gap size wrong estimation (local) 16796287 16877538 635857 716954 CM091751.1 scf7180000184245 99.0 True fake: scaffold gap size wrong estimation (local) 16877751 16935187 717081 774229 CM091751.1 scf7180000184245 98.91 True fake: scaffold gap size wrong estimation (local) 16937008 16951402 775310 789825 CM091751.1 scf7180000184245 99.17 True fake: scaffold gap size wrong estimation (local) 16951871 16957472 789913 795524 CM091751.1 scf7180000184245 99.29 True fake: scaffold gap size wrong estimation (local) 16957857 16958488 795868 796499 CM091751.1 scf7180000184245 100.0 True fake: scaffold gap size wrong estimation (local) 16958771 16981189 796595 819056 CM091751.1 scf7180000184245 99.74 True fake: scaffold gap size wrong estimation (local) 16981512 16990000 819144 827632 CM091751.1 scf7180000184245 99.95 True fake: scaffold gap size wrong estimation (local) 16990785 17009011 828063 846288 CM091751.1 scf7180000184245 99.96 True indel: indel (> 5bp) 17009076 17103843 846369 941130 CM091751.1 scf7180000184245 99.88 True fake: not a misassembly (possible transposable element) 5898422 5899992 942702 941131 CM091765.1 scf7180000184245 99.34 True fake: not a misassembly (possible transposable element) 17103766 17115816 942723 954771 CM091751.1 scf7180000184245 99.98 True fake: scaffold gap size wrong estimation (local) 17116021 17120377 954797 959393 CM091751.1 scf7180000184245 95.17 True fake: scaffold gap size wrong estimation (local) 17120465 17143508 959475 982510 CM091751.1 scf7180000184245 99.95 True fake: scaffold gap size wrong estimation (local) 17143657 17147516 982629 986488 CM091751.1 scf7180000184245 100.0 True fake: scaffold gap size wrong estimation (local) 17147835 17149153 986592 987910 CM091751.1 scf7180000184245 100.0 True fake: scaffold gap size wrong estimation (local) 17149275 17166908 988019 1005612 CM091751.1 scf7180000184245 97.8 True fake: scaffold gap size wrong estimation (local) 17167007 17234963 1005718 1073217 CM091751.1 scf7180000184245 99.22 True fake: scaffold gap size wrong estimation (local) 17235785 17237450 1073672 1075341 CM091751.1 scf7180000184245 99.7 True fake: scaffold gap size wrong estimation (local) 17237570 17238815 1075440 1076685 CM091751.1 scf7180000184245 100.0 True fake: scaffold gap size wrong estimation (local) 17238920 17246644 1076770 1084494 CM091751.1 scf7180000184245 99.99 True fake: scaffold gap size wrong estimation (local) 17246759 17247302 1085602 1086145 CM091751.1 scf7180000184245 100.0 True fake: scaffold gap size wrong estimation (local) 17252744 17258809 1090952 1097030 CM091751.1 scf7180000184245 99.93 True fake: scaffold gap size wrong estimation (local) 17259572 17260885 1097593 1098904 CM091751.1 scf7180000184245 99.85 True fake: scaffold gap size wrong estimation (local) 17262470 17278098 1100642 1116268 CM091751.1 scf7180000184245 99.97 True translocation, scaffold gap is present 15960014 15960920 1117241 1116336 CM091757.1 scf7180000184245 99.78 True fake: scaffold gap size wrong estimation (local) 15958807 15959783 1118698 1117722 CM091757.1 scf7180000184245 97.95 True fake: scaffold gap size wrong estimation (local) 15955229 15956634 1121155 1119751 CM091757.1 scf7180000184245 99.86 True fake: not a misassembly (possible transposable element) 17279529 17282894 1121222 1124586 CM091751.1 scf7180000184245 99.97 True fake: not a misassembly (possible transposable element) 15952019 15954103 1126722 1124637 CM091757.1 scf7180000184245 99.95 True fake: not a misassembly (possible transposable element) 17285105 17286093 1127247 1128236 CM091751.1 scf7180000184245 99.9 True fake: not a misassembly (possible transposable element) 15950827 15951766 1129234 1128287 CM091757.1 scf7180000184245 98.63 True translocation, scaffold gap is present 11228687 11229254 1130732 1130165 CM091765.1 scf7180000184245 100.0 True indel: indel (<= 5bp) 11227618 11228314 1131805 1131109 CM091765.1 scf7180000184245 99.28 True fake: scaffold gap size wrong estimation (local) 11226899 11227578 1132884 1132205 CM091765.1 scf7180000184245 98.38 True indel: indel (<= 5bp) 11226386 11226898 1133400 1132888 CM091765.1 scf7180000184245 99.03 True fake: scaffold gap size wrong estimation (local) 11224422 11225995 1135396 1133821 CM091765.1 scf7180000184245 98.79 True translocation, scaffold gap is present 3334565 3335229 1138333 1137669 CM091759.1 scf7180000184245 100.0 True indel: indel (<= 5bp) 3331863 3334564 1141036 1138335 CM091759.1 scf7180000184245 99.93 True fake: scaffold gap size wrong estimation (local) 3329479 3331862 1147224 1144841 CM091759.1 scf7180000184245 100.0 True fake: scaffold gap size wrong estimation (local) 3328893 3329478 1147831 1147246 CM091759.1 scf7180000184245 99.83 True fake: scaffold gap size wrong estimation (local) 3327005 3328487 1150635 1149153 CM091759.1 scf7180000184245 99.26 True fake: scaffold gap size wrong estimation (local) 3325537 3327004 1152121 1150654 CM091759.1 scf7180000184245 99.66 True translocation, scaffold gap is present 11211943 11213181 1153417 1152180 CM091765.1 scf7180000184245 98.79 True translocation, scaffold gap is present 16220837 16221922 1154719 1153634 CM091757.1 scf7180000184245 100.0 True relocation, scaffold gap is present, inconsistency = 274713 15944795 15945552 1156067 1155291 CM091757.1 scf7180000184245 97.89 True translocation, scaffold gap is present 3321827 3324713 1158994 1156108 CM091759.1 scf7180000184245 100.0 True translocation, scaffold gap is present 17283521 17284375 1159049 1159903 CM091751.1 scf7180000184245 99.47 True translocation 15934323 15940591 1165925 1159904 CM091757.1 scf7180000184245 95.57 True relocation, scaffold gap is present, inconsistency = 172995 15760465 15761273 1166788 1165980 CM091757.1 scf7180000184245 100.0 True translocation, scaffold gap is present 11210936 11211530 1167432 1166838 CM091765.1 scf7180000184245 100.0 True translocation, scaffold gap is present 15933300 15934236 1168399 1167453 CM091757.1 scf7180000184245 100.0 True fake: scaffold gap size wrong estimation (local) 15928346 15932465 1173825 1169707 CM091757.1 scf7180000184245 99.78 True translocation, scaffold gap is present 1482435 1483144 1174555 1173846 CM091764.1 scf7180000184245 100.0 True translocation, scaffold gap is present 15756449 15757341 1175886 1174994 CM091757.1 scf7180000184245 100.0 True translocation, scaffold gap is present 3320054 3320963 1176865 1175945 CM091759.1 scf7180000184245 99.09 True translocation, scaffold gap is present 1480050 1480889 1178396 1177557 CM091764.1 scf7180000184245 100.0 True translocation, scaffold gap is present 15923053 15923809 1182041 1181285 CM091757.1 scf7180000184245 100.0 True indel: indel (> 5bp) 15922199 15923009 1182852 1182042 CM091757.1 scf7180000184245 97.41 True local misassembly 15920805 15922008 1184056 1182853 CM091757.1 scf7180000184245 98.09 True fake: scaffold gap size wrong estimation (local) 15919077 15920645 1185775 1184207 CM091757.1 scf7180000184245 97.71 True indel: indel (<= 5bp) 15918384 15919073 1186465 1185776 CM091757.1 scf7180000184245 99.42 True indel: indel (> 5bp) 15917544 15918119 1187316 1186741 CM091757.1 scf7180000184245 99.48 True fake: not a misassembly (possible transposable element) 1939673 1940960 1187449 1188733 CM091764.1 scf7180000184245 97.53 True fake: not a misassembly (possible transposable element) 15915971 15917361 1190197 1188784 CM091757.1 scf7180000184245 97.99 True fake: scaffold gap size wrong estimation (local) 15912924 15914485 1193561 1192000 CM091757.1 scf7180000184245 97.06 True indel: indel (> 5bp) 15911643 15912903 1194822 1193562 CM091757.1 scf7180000184245 95.96 True fake: scaffold gap size wrong estimation (local) 15908357 15911155 1199968 1197170 CM091757.1 scf7180000184245 99.93 True translocation, scaffold gap is present 1944392 1946040 1201562 1203210 CM091764.1 scf7180000184245 99.7 True fake: scaffold gap size wrong estimation (local) 1946453 1947110 1204459 1205116 CM091764.1 scf7180000184245 96.2 True fake: scaffold gap size wrong estimation (local) 1947411 1948482 1205789 1206894 CM091764.1 scf7180000184245 99.41 True translocation, scaffold gap is present 15902982 15903784 1208044 1207242 CM091757.1 scf7180000184245 100.0 True fake: scaffold gap size wrong estimation (local) 15896953 15900036 1213541 1210472 CM091757.1 scf7180000184245 98.4 True translocation, scaffold gap is present 11503345 11505570 1216450 1214225 CM091765.1 scf7180000184245 99.15 True fake: scaffold gap size wrong estimation (local) 11499568 11502040 1219988 1217516 CM091765.1 scf7180000184245 99.96 True fake: scaffold gap size wrong estimation (local) 11498763 11499567 1221081 1220277 CM091765.1 scf7180000184245 95.9 True indel: indel (<= 5bp) 11497990 11498762 1221859 1221087 CM091765.1 scf7180000184245 100.0 True fake: scaffold gap size wrong estimation (local) 11494029 11497606 1226020 1222442 CM091765.1 scf7180000184245 99.86 True translocation, scaffold gap is present 9289565 9290230 1226718 1226053 CM091767.1 scf7180000184245 99.4 True fake: scaffold gap size wrong estimation (local) 9288878 9289399 1227535 1227014 CM091767.1 scf7180000184245 99.04 True fake: scaffold gap size wrong estimation (local) 9286669 9287411 1228645 1227903 CM091767.1 scf7180000184245 97.04 True local misassembly 9286016 9286520 1229150 1228646 CM091767.1 scf7180000184245 99.8 True translocation, scaffold gap is present 11492063 11493058 1230255 1229260 CM091765.1 scf7180000184245 97.93 True relocation, inconsistency = 140409 11348482 11351653 1230256 1233400 CM091765.1 scf7180000184245 98.07 True fake: not a misassembly (possible transposable element) 16279236 16281524 1235746 1233458 CM091757.1 scf7180000184245 99.65 True fake: not a misassembly (possible transposable element) 11347668 11348469 1235747 1236548 CM091765.1 scf7180000184245 98.65 True fake: scaffold gap size wrong estimation (local) 11351741 11352780 1236569 1237608 CM091765.1 scf7180000184245 100.0 True translocation, scaffold gap is present 9283924 9285093 1238847 1237678 CM091767.1 scf7180000184245 99.57 True relocation, scaffold gap is present, inconsistency = 175288 9460402 9461219 1238868 1239685 CM091767.1 scf7180000184245 99.88 True relocation, scaffold gap is present, inconsistency = 188462 9271352 9271919 1240273 1239706 CM091767.1 scf7180000184245 99.82 True translocation, scaffold gap is present 11363454 11364170 1240296 1241011 CM091765.1 scf7180000184245 99.16 True fake: not a misassembly (possible transposable element) 9461290 9462913 1241326 1242947 CM091767.1 scf7180000184245 98.58 True fake: not a misassembly (possible transposable element) 11364791 11370726 1243000 1248953 CM091765.1 scf7180000184245 99.83 True translocation, scaffold gap is present 9272011 9273092 1250055 1248974 CM091767.1 scf7180000184245 99.91 True relocation, scaffold gap is present, inconsistency = 193783 9466896 9467604 1250076 1250784 CM091767.1 scf7180000184245 99.29 True local misassembly 9465027 9466109 1250865 1251947 CM091767.1 scf7180000184245 99.91 True fake: scaffold gap size wrong estimation (local) 9468221 9471193 1253569 1256540 CM091767.1 scf7180000184245 99.5 True fake: not a misassembly (possible transposable element) 8674865 8676765 1258461 1256561 CM091767.1 scf7180000184245 99.89 True fake: not a misassembly (possible transposable element) 9471125 9472664 1258512 1260050 CM091767.1 scf7180000184245 97.6 True translocation 11371142 11371810 1260051 1260719 CM091765.1 scf7180000184245 97.96 True translocation, scaffold gap is present 8673985 8674555 1261348 1260778 CM091767.1 scf7180000184245 100.0 True fake: scaffold gap size wrong estimation (local) 8671059 8673313 1264857 1262599 CM091767.1 scf7180000184245 97.89 True fake: scaffold gap size wrong estimation (local) 8669157 8669727 1266487 1265917 CM091767.1 scf7180000184245 99.82 True fake: scaffold gap size wrong estimation (local) 8666461 8668411 1269801 1267831 CM091767.1 scf7180000184245 99.59 True translocation, scaffold gap is present 11372021 11373574 1269853 1271406 CM091765.1 scf7180000184245 100.0 True translocation, scaffold gap is present 6408436 6409044 1271573 1272181 CM091768.1 scf7180000184245 95.73 True indel: indel (> 5bp) 6409277 6409976 1272487 1273186 CM091768.1 scf7180000184245 99.86 True fake: scaffold gap size wrong estimation (local) 6410726 6411271 1274382 1274927 CM091768.1 scf7180000184245 96.34 True indel: indel (<= 5bp) 6411547 6412361 1275202 1276016 CM091768.1 scf7180000184245 99.88 True translocation, scaffold gap is present 16199890 16201692 1276120 1277957 CM091757.1 scf7180000184245 98.54 True fake: scaffold gap size wrong estimation (local) 16202609 16203208 1278183 1278782 CM091757.1 scf7180000184245 99.17 True translocation, scaffold gap is present 11377427 11377994 1279322 1279889 CM091765.1 scf7180000184245 100.0 True fake: not a misassembly (possible transposable element) 6414607 6415348 1279952 1280693 CM091768.1 scf7180000184245 99.73 True fake: not a misassembly (possible transposable element) 11378246 11379338 1281085 1282177 CM091765.1 scf7180000184245 99.81 True fake: scaffold gap size wrong estimation (local) 11380055 11380715 1282619 1283279 CM091765.1 scf7180000184245 99.39 True fake: scaffold gap size wrong estimation (local) 11381078 11383932 1283605 1286433 CM091765.1 scf7180000184245 98.16 True fake: scaffold gap size wrong estimation (local) 11384432 11385416 1286552 1287559 CM091765.1 scf7180000184245 99.29 True fake: scaffold gap size wrong estimation (local) 11385558 11387309 1287649 1289400 CM091765.1 scf7180000184245 100.0 True fake: scaffold gap size wrong estimation (local) 11388694 11389773 1290268 1291347 CM091765.1 scf7180000184245 99.72 True fake: scaffold gap size wrong estimation (local) 11390991 11392867 1292932 1294808 CM091765.1 scf7180000184245 99.36 True indel: stretch of mismatches 11392936 11395250 1294877 1297191 CM091765.1 scf7180000184245 98.96 True fake: scaffold gap size wrong estimation (local) 11395436 11395958 1297862 1298384 CM091765.1 scf7180000184245 100.0 True fake: scaffold gap size wrong estimation (local) 11398919 11399680 1298453 1299214 CM091765.1 scf7180000184245 99.48 True local misassembly 11396049 11396940 1299282 1300174 CM091765.1 scf7180000184245 99.89 True translocation, scaffold gap is present 7699530 7701380 1302516 1304366 CM091767.1 scf7180000184245 98.27 True indel: indel (<= 5bp) 7701382 7703896 1304367 1306881 CM091767.1 scf7180000184245 99.96 True local misassembly 7705633 7711437 1306908 1312479 CM091767.1 scf7180000184245 95.9 True fake: scaffold gap size wrong estimation (local) 7711562 7713703 1312904 1315122 CM091767.1 scf7180000184245 98.77 True fake: scaffold gap size wrong estimation (local) 7715029 7719900 1316998 1321876 CM091767.1 scf7180000184245 100.0 True fake: scaffold gap size wrong estimation (local) 7720813 7723518 1322064 1324769 CM091767.1 scf7180000184245 99.96 True local misassembly 7723697 7727345 1324770 1328418 CM091767.1 scf7180000184245 99.31 True indel: indel (<= 5bp) 7727347 7728545 1328419 1329617 CM091767.1 scf7180000184245 99.92 True indel: indel (<= 5bp) 7728563 7729111 1329632 1330180 CM091767.1 scf7180000184245 99.64 True indel: indel (<= 5bp) 7729112 7730656 1330182 1331726 CM091767.1 scf7180000184245 99.74 True local misassembly 7731467 7732165 1331995 1332693 CM091767.1 scf7180000184245 97.14 True fake: scaffold gap size wrong estimation (local) 7732854 7733985 1333297 1334428 CM091767.1 scf7180000184245 100.0 True fake: scaffold gap size wrong estimation (local) 7734178 7735158 1334718 1335733 CM091767.1 scf7180000184245 99.28 True fake: scaffold gap size wrong estimation (local) 7735570 7736880 1336137 1337447 CM091767.1 scf7180000184245 99.92 True translocation, scaffold gap is present 95493 96619 1337468 1338568 CM091764.1 scf7180000184245 97.56 True fake: scaffold gap size wrong estimation (local) 100388 100917 1340518 1341047 CM091764.1 scf7180000184245 99.62 True translocation, scaffold gap is present 16326779 16330022 1344383 1341098 CM091757.1 scf7180000184245 99.3 True fake: scaffold gap size wrong estimation (local) 16325045 16325890 1346080 1345235 CM091757.1 scf7180000184245 97.52 True local misassembly 16323541 16324867 1347443 1346117 CM091757.1 scf7180000184245 99.55 True fake: scaffold gap size wrong estimation (local) 16322712 16323308 1348659 1348063 CM091757.1 scf7180000184245 100.0 True CONTIG scf7180000184245 1348659 misassembled 6279176 6283029 5256 1430 CM091767.1 scf7180000184246 98.68 True fake: scaffold gap size wrong estimation (local) 6256009 6278205 28110 5971 CM091767.1 scf7180000184246 99.26 True fake: scaffold gap size wrong estimation (local) 6252689 6255823 31407 28271 CM091767.1 scf7180000184246 99.33 True fake: scaffold gap size wrong estimation (local) 6241441 6251771 42281 31955 CM091767.1 scf7180000184246 99.47 True fake: scaffold gap size wrong estimation (local) 6224905 6240364 58576 43103 CM091767.1 scf7180000184246 99.68 True fake: scaffold gap size wrong estimation (local) 6223908 6224670 59540 58778 CM091767.1 scf7180000184246 99.61 True fake: scaffold gap size wrong estimation (local) 6217680 6223738 65886 59681 CM091767.1 scf7180000184246 97.25 True fake: scaffold gap size wrong estimation (local) 6170756 6216848 112021 66311 CM091767.1 scf7180000184246 98.09 True fake: scaffold gap size wrong estimation (local) 6139440 6169878 143281 112847 CM091767.1 scf7180000184246 99.4 True fake: scaffold gap size wrong estimation (local) 6111573 6139244 170587 143467 CM091767.1 scf7180000184246 97.44 True fake: scaffold gap size wrong estimation (local) 5985305 6111320 296185 170660 CM091767.1 scf7180000184246 99.05 True fake: scaffold gap size wrong estimation (local) 5982935 5984888 298524 296558 CM091767.1 scf7180000184246 97.6 True fake: scaffold gap size wrong estimation (local) 5899362 5982716 382016 298723 CM091767.1 scf7180000184246 99.5 True fake: scaffold gap size wrong estimation (local) 5886279 5899430 395659 382424 CM091767.1 scf7180000184246 98.75 True fake: scaffold gap size wrong estimation (local) 5883374 5884635 397978 396717 CM091767.1 scf7180000184246 99.92 True indel: indel (<= 5bp) 5882761 5883373 398592 397980 CM091767.1 scf7180000184246 98.04 True fake: scaffold gap size wrong estimation (local) 5881738 5882287 400140 399591 CM091767.1 scf7180000184246 98.73 True local misassembly 5873487 5881288 408095 400274 CM091767.1 scf7180000184246 98.86 True fake: not a misassembly (possible transposable element) 4464619 4470058 408096 413539 CM091760.1 scf7180000184246 99.28 True fake: not a misassembly (possible transposable element) 5871390 5872412 414611 413589 CM091767.1 scf7180000184246 98.73 True indel: indel (<= 5bp) 5850042 5871291 436023 414712 CM091767.1 scf7180000184246 98.94 True fake: scaffold gap size wrong estimation (local) 5820199 5849306 465289 436399 CM091767.1 scf7180000184246 98.2 True indel: indel (> 5bp) 5814896 5820039 470608 465460 CM091767.1 scf7180000184246 99.13 True fake: scaffold gap size wrong estimation (local) 5813598 5814113 471893 471378 CM091767.1 scf7180000184246 98.84 True indel: indel (> 5bp) 5809955 5813401 475512 472066 CM091767.1 scf7180000184246 99.59 True fake: scaffold gap size wrong estimation (local) 5808543 5809607 476941 475877 CM091767.1 scf7180000184246 98.78 True indel: indel (> 5bp) 5807656 5808297 477841 477200 CM091767.1 scf7180000184246 100.0 True indel: stretch of mismatches 5806520 5807646 478977 477851 CM091767.1 scf7180000184246 99.38 True fake: scaffold gap size wrong estimation (local) 5804388 5805124 481117 480381 CM091767.1 scf7180000184246 98.78 True indel: indel (<= 5bp) 5803824 5804383 481677 481118 CM091767.1 scf7180000184246 98.93 True local misassembly 5801731 5802714 482910 481927 CM091767.1 scf7180000184246 98.98 True indel: indel (<= 5bp) 5801202 5801729 483438 482911 CM091767.1 scf7180000184246 99.24 True fake: scaffold gap size wrong estimation (local) 5797255 5799411 487247 485091 CM091767.1 scf7180000184246 99.17 True local misassembly 5795818 5796569 488165 487414 CM091767.1 scf7180000184246 99.34 True indel: stretch of mismatches 5793955 5795607 490028 488376 CM091767.1 scf7180000184246 98.73 True local misassembly 5786073 5793589 498106 490569 CM091767.1 scf7180000184246 98.92 True fake: scaffold gap size wrong estimation (local) 5780382 5785893 503761 498254 CM091767.1 scf7180000184246 98.35 True fake: scaffold gap size wrong estimation (local) 5779382 5779948 504892 504326 CM091767.1 scf7180000184246 99.82 True local misassembly 5776696 5778746 507575 505525 CM091767.1 scf7180000184246 99.41 True fake: scaffold gap size wrong estimation (local) 5775103 5775849 509190 508444 CM091767.1 scf7180000184246 99.6 True indel: indel (> 5bp) 5773293 5774695 511012 509610 CM091767.1 scf7180000184246 99.36 True indel: indel (<= 5bp) 5772420 5773291 511884 511013 CM091767.1 scf7180000184246 98.97 True indel: indel (> 5bp) 5771752 5772354 512543 511941 CM091767.1 scf7180000184246 99.5 True indel: indel (> 5bp) 5770921 5771751 513405 512575 CM091767.1 scf7180000184246 99.04 True indel: indel (<= 5bp) 5769196 5770740 515132 513588 CM091767.1 scf7180000184246 99.35 True local misassembly 5766275 5768175 517124 515224 CM091767.1 scf7180000184246 99.37 True indel: indel (<= 5bp) 5765029 5765819 518371 517581 CM091767.1 scf7180000184246 99.12 True fake: scaffold gap size wrong estimation (local) 5763883 5765028 519571 518426 CM091767.1 scf7180000184246 99.74 True indel: indel (<= 5bp) 5763220 5763882 520235 519573 CM091767.1 scf7180000184246 99.4 True indel: indel (<= 5bp) 5727737 5762744 555185 520710 CM091767.1 scf7180000184246 97.39 True fake: scaffold gap size wrong estimation (local) 5725324 5727615 557591 555302 CM091767.1 scf7180000184246 98.08 True fake: scaffold gap size wrong estimation (local) 5710208 5725214 572698 557683 CM091767.1 scf7180000184246 98.91 True fake: not a misassembly (possible transposable element) 5708986 5709863 572757 573634 CM091767.1 scf7180000184246 99.58 True fake: not a misassembly (possible transposable element) 5704627 5710451 579421 573635 CM091767.1 scf7180000184246 98.33 True relocation, inconsistency = 13007 5690756 5691619 580285 579422 CM091767.1 scf7180000184246 99.44 True indel: indel (<= 5bp) 5688755 5690740 582285 580300 CM091767.1 scf7180000184246 99.65 True indel: indel (<= 5bp) 5687749 5688754 583292 582287 CM091767.1 scf7180000184246 99.9 True indel: indel (> 5bp) 5683231 5687742 587804 583293 CM091767.1 scf7180000184246 99.65 True indel: indel (> 5bp) 5679085 5683230 591958 587813 CM091767.1 scf7180000184246 99.16 True indel: indel (> 5bp) 5678452 5679013 592520 591959 CM091767.1 scf7180000184246 99.64 True indel: indel (<= 5bp) 5677866 5678451 593109 592524 CM091767.1 scf7180000184246 97.95 True indel: indel (> 5bp) 5675165 5677865 595820 593120 CM091767.1 scf7180000184246 99.26 True fake: scaffold gap size wrong estimation (local) 5673437 5675164 598308 596581 CM091767.1 scf7180000184246 97.16 True indel: indel (> 5bp) 5671117 5673408 600600 598309 CM091767.1 scf7180000184246 99.65 True indel: indel (<= 5bp) 5669494 5671116 602224 600602 CM091767.1 scf7180000184246 100.0 True indel: indel (<= 5bp) 5668792 5669492 602925 602225 CM091767.1 scf7180000184246 99.57 True fake: scaffold gap size wrong estimation (local) 5666478 5667286 605093 604285 CM091767.1 scf7180000184246 99.75 True fake: scaffold gap size wrong estimation (local) 5664857 5666477 606740 605120 CM091767.1 scf7180000184246 99.57 True local misassembly 5662917 5663448 607481 606950 CM091767.1 scf7180000184246 96.99 True indel: indel (> 5bp) 5661114 5662916 609307 607505 CM091767.1 scf7180000184246 99.22 True indel: indel (<= 5bp) 5659837 5660764 610586 609659 CM091767.1 scf7180000184246 98.92 True fake: scaffold gap size wrong estimation (local) 5657860 5658644 612527 611743 CM091767.1 scf7180000184246 99.24 True indel: indel (<= 5bp) 5654730 5657548 615652 612834 CM091767.1 scf7180000184246 99.75 True indel: indel (> 5bp) 5654024 5654729 616375 615670 CM091767.1 scf7180000184246 98.87 True indel: indel (> 5bp) 5652668 5653799 617739 616608 CM091767.1 scf7180000184246 99.12 True indel: indel (> 5bp) 5651174 5652665 619250 617759 CM091767.1 scf7180000184246 98.26 True local misassembly 5649893 5650950 620308 619251 CM091767.1 scf7180000184246 99.43 True indel: indel (<= 5bp) 5648997 5649888 621200 620309 CM091767.1 scf7180000184246 98.99 True fake: scaffold gap size wrong estimation (local) 5646941 5648996 623346 621291 CM091767.1 scf7180000184246 99.32 True indel: indel (> 5bp) 5644748 5646917 625516 623347 CM091767.1 scf7180000184246 99.68 True indel: indel (<= 5bp) 5644045 5644747 626221 625519 CM091767.1 scf7180000184246 99.72 True fake: scaffold gap size wrong estimation (local) 5643361 5644046 627454 626769 CM091767.1 scf7180000184246 99.42 True indel: indel (> 5bp) 5642496 5643295 628308 627509 CM091767.1 scf7180000184246 99.12 True indel: indel (<= 5bp) 5641258 5642490 629541 628309 CM091767.1 scf7180000184246 99.59 True local misassembly 5639265 5640045 630621 629841 CM091767.1 scf7180000184246 99.1 True indel: indel (> 5bp) 5637124 5639264 632781 630641 CM091767.1 scf7180000184246 97.85 True local misassembly 5635237 5636958 634503 632782 CM091767.1 scf7180000184246 99.3 True indel: indel (<= 5bp) 5633646 5635235 636093 634504 CM091767.1 scf7180000184246 99.06 True indel: indel (<= 5bp) 5631506 5633645 638235 636096 CM091767.1 scf7180000184246 99.39 True indel: indel (> 5bp) 5629715 5631434 640018 638299 CM091767.1 scf7180000184246 99.71 True indel: indel (<= 5bp) 5627420 5629710 642309 640019 CM091767.1 scf7180000184246 99.3 True indel: indel (<= 5bp) 5626572 5627418 643156 642310 CM091767.1 scf7180000184246 100.0 True indel: indel (> 5bp) 5625545 5626571 644202 643176 CM091767.1 scf7180000184246 99.61 True indel: indel (<= 5bp) 5624920 5625544 644828 644204 CM091767.1 scf7180000184246 99.68 True fake: scaffold gap size wrong estimation (local) 5621386 5624674 648384 645096 CM091767.1 scf7180000184246 99.85 True indel: indel (<= 5bp) 5620140 5621385 649634 648389 CM091767.1 scf7180000184246 99.84 True fake: scaffold gap size wrong estimation (local) 5618128 5619627 651657 650158 CM091767.1 scf7180000184246 98.93 True local misassembly 5616111 5617109 653129 652131 CM091767.1 scf7180000184246 100.0 True indel: indel (> 5bp) 5614298 5616087 654926 653137 CM091767.1 scf7180000184246 99.55 True fake: scaffold gap size wrong estimation (local) 5611019 5612841 657627 655805 CM091767.1 scf7180000184246 99.95 True local misassembly 5608098 5610367 660386 658117 CM091767.1 scf7180000184246 99.52 True fake: scaffold gap size wrong estimation (local) 5606245 5607533 662690 661400 CM091767.1 scf7180000184246 99.15 True fake: scaffold gap size wrong estimation (local) 5603766 5605932 664965 662799 CM091767.1 scf7180000184246 97.14 True local misassembly 5599546 5602413 668971 666104 CM091767.1 scf7180000184246 99.41 True local misassembly 5597240 5599537 671458 669161 CM091767.1 scf7180000184246 98.96 True indel: indel (> 5bp) 5595529 5597188 673182 671523 CM091767.1 scf7180000184246 99.52 True indel: indel (<= 5bp) 5594842 5595527 673868 673183 CM091767.1 scf7180000184246 99.71 True fake: scaffold gap size wrong estimation (local) 5569485 5594315 698568 674384 CM091767.1 scf7180000184246 96.25 True fake: scaffold gap size wrong estimation (local) 5566476 5569065 701456 698874 CM091767.1 scf7180000184246 99.27 True fake: scaffold gap size wrong estimation (local) 5523947 5566314 743678 701595 CM091767.1 scf7180000184246 98.53 True local misassembly 5505341 5523702 761941 743834 CM091767.1 scf7180000184246 97.76 True fake: scaffold gap size wrong estimation (local) 5270551 5505124 996743 762124 CM091767.1 scf7180000184246 99.76 True fake: scaffold gap size wrong estimation (local) 5209625 5269153 1056727 997622 CM091767.1 scf7180000184246 98.6 True fake: scaffold gap size wrong estimation (local) 5189772 5209371 1076489 1056901 CM091767.1 scf7180000184246 99.3 True indel: indel (> 5bp) 5189025 5189719 1077226 1076532 CM091767.1 scf7180000184246 99.57 True local misassembly 5187327 5188504 1078918 1077741 CM091767.1 scf7180000184246 99.58 True local misassembly 5185679 5186406 1080563 1079836 CM091767.1 scf7180000184246 99.18 True indel: indel (<= 5bp) 5185036 5185678 1081207 1080565 CM091767.1 scf7180000184246 99.22 True local misassembly 5182170 5183217 1083479 1082432 CM091767.1 scf7180000184246 98.85 True indel: indel (<= 5bp) 5181199 5182152 1084452 1083499 CM091767.1 scf7180000184246 99.79 True local misassembly 5178889 5179446 1086773 1086216 CM091767.1 scf7180000184246 99.46 True fake: scaffold gap size wrong estimation (local) 5161738 5178145 1103467 1087213 CM091767.1 scf7180000184246 97.84 True local misassembly 5113392 5161047 1151773 1103545 CM091767.1 scf7180000184246 98.52 True translocation 14952595 14963245 1162197 1151774 CM091755.1 scf7180000184246 96.52 True indel: indel (> 5bp) 14951710 14952575 1163073 1162207 CM091755.1 scf7180000184246 99.65 True fake: scaffold gap size wrong estimation (local) 14939515 14950664 1174371 1163269 CM091755.1 scf7180000184246 98.32 True relocation, inconsistency = -973116 15910086 15912630 1176914 1174372 CM091755.1 scf7180000184246 99.57 True CONTIG scf7180000184246 1176914 misassembled 7157480 7168317 1 10838 CM091757.1 scf7180000184247 99.9 True fake: scaffold gap size wrong estimation (local) 7168480 7176318 10930 18947 CM091757.1 scf7180000184247 97.4 True fake: scaffold gap size wrong estimation (local) 7177031 7178469 19421 20864 CM091757.1 scf7180000184247 99.38 True indel: indel (> 5bp) 7178529 7190786 20935 33194 CM091757.1 scf7180000184247 99.53 True fake: scaffold gap size wrong estimation (local) 7193143 7233357 34013 73601 CM091757.1 scf7180000184247 97.53 True fake: scaffold gap size wrong estimation (local) 7233475 7255718 73728 95785 CM091757.1 scf7180000184247 98.15 True fake: scaffold gap size wrong estimation (local) 7255837 7258957 95887 99021 CM091757.1 scf7180000184247 98.25 True fake: scaffold gap size wrong estimation (local) 7259222 7282821 99201 122697 CM091757.1 scf7180000184247 98.18 True indel: indel (> 5bp) 7282958 7380225 122879 220411 CM091757.1 scf7180000184247 98.44 True fake: scaffold gap size wrong estimation (local) 7380396 7404579 220543 244726 CM091757.1 scf7180000184247 99.9 True indel: indel (> 5bp) 7404789 7409175 245014 249404 CM091757.1 scf7180000184247 99.7 True fake: scaffold gap size wrong estimation (local) 7409689 7480905 250369 321716 CM091757.1 scf7180000184247 99.48 True fake: scaffold gap size wrong estimation (local) 7481106 7504553 321890 345337 CM091757.1 scf7180000184247 99.21 True fake: scaffold gap size wrong estimation (local) 7504681 7506402 345451 347185 CM091757.1 scf7180000184247 98.44 True indel: indel (> 5bp) 7506422 7542065 347198 382813 CM091757.1 scf7180000184247 98.83 True fake: scaffold gap size wrong estimation (local) 7542408 7578610 382968 419035 CM091757.1 scf7180000184247 98.78 True indel: indel (> 5bp) 7578707 7598123 419119 438920 CM091757.1 scf7180000184247 97.23 True fake: scaffold gap size wrong estimation (local) 7598292 7609246 439059 449958 CM091757.1 scf7180000184247 98.52 True indel: indel (> 5bp) 7609332 7610253 450059 450980 CM091757.1 scf7180000184247 98.17 True fake: scaffold gap size wrong estimation (local) 7610536 7618477 451060 459002 CM091757.1 scf7180000184247 98.85 True indel: stretch of mismatches 7618478 7718993 459003 559449 CM091757.1 scf7180000184247 98.1 True fake: scaffold gap size wrong estimation (local) 7719277 7733760 559551 573609 CM091757.1 scf7180000184247 96.36 True fake: scaffold gap size wrong estimation (local) 7734022 7789204 573793 628946 CM091757.1 scf7180000184247 99.37 True fake: scaffold gap size wrong estimation (local) 7789386 7795745 629561 635922 CM091757.1 scf7180000184247 99.59 True fake: scaffold gap size wrong estimation (local) 7795920 7839098 636069 679078 CM091757.1 scf7180000184247 97.11 True fake: scaffold gap size wrong estimation (local) 7839314 7864685 679356 704806 CM091757.1 scf7180000184247 99.18 True fake: scaffold gap size wrong estimation (local) 7864931 7911221 704993 750825 CM091757.1 scf7180000184247 98.3 True local misassembly 7911665 7912637 750899 751867 CM091757.1 scf7180000184247 98.56 True local misassembly 7912816 7934546 752157 773949 CM091757.1 scf7180000184247 99.02 True relocation, inconsistency = 29438 7964335 8007704 774300 817494 CM091757.1 scf7180000184247 98.6 True fake: scaffold gap size wrong estimation (local) 8007940 8163087 817597 972651 CM091757.1 scf7180000184247 98.94 True fake: scaffold gap size wrong estimation (local) 8163385 8174793 972827 984258 CM091757.1 scf7180000184247 99.34 True indel: indel (> 5bp) 8174830 8268335 984341 1077495 CM091757.1 scf7180000184247 98.75 True indel: indel (> 5bp) 8268377 8285458 1077524 1094624 CM091757.1 scf7180000184247 99.14 True indel: indel (> 5bp) 8285554 8420679 1094736 1229896 CM091757.1 scf7180000184247 99.35 True indel: indel (> 5bp) 8420702 8460521 1229942 1269857 CM091757.1 scf7180000184247 99.07 True indel: indel (> 5bp) 8460586 8542367 1269928 1351775 CM091757.1 scf7180000184247 99.24 True indel: indel (> 5bp) 8542452 8635093 1351847 1444278 CM091757.1 scf7180000184247 99.14 True indel: indel (> 5bp) 8635203 8674499 1444370 1483669 CM091757.1 scf7180000184247 99.44 True fake: scaffold gap size wrong estimation (local) 8674605 8917925 1483766 1723012 CM091757.1 scf7180000184247 97.83 True indel: indel (> 5bp) 8917975 8976973 1723093 1781979 CM091757.1 scf7180000184247 99.24 True indel: indel (> 5bp) 8977057 9062613 1782046 1867750 CM091757.1 scf7180000184247 99.34 True fake: scaffold gap size wrong estimation (local) 9063387 9128865 1867951 1933477 CM091757.1 scf7180000184247 99.28 True fake: scaffold gap size wrong estimation (local) 9129793 9364990 1933790 2168892 CM091757.1 scf7180000184247 99.32 True fake: scaffold gap size wrong estimation (local) 9365292 9460879 2169611 2265217 CM091757.1 scf7180000184247 99.48 True indel: indel (> 5bp) 9460920 9505279 2265273 2309767 CM091757.1 scf7180000184247 99.39 True fake: scaffold gap size wrong estimation (local) 9505491 9559325 2309932 2363428 CM091757.1 scf7180000184247 98.92 True fake: scaffold gap size wrong estimation (local) 9559450 9661392 2363518 2465740 CM091757.1 scf7180000184247 98.77 True CONTIG scf7180000184247 2465740 misassembled 18591802 18593007 3303 2097 CM091751.1 scf7180000184248 98.94 True relocation, inconsistency = 79404 18500701 18512397 15202 3304 CM091751.1 scf7180000184248 97.4 True fake: scaffold gap size wrong estimation (local) 18494936 18500350 20872 15453 CM091751.1 scf7180000184248 98.88 True fake: not a misassembly (possible transposable element) 6535957 6536990 22020 20995 CM091762.1 scf7180000184248 98.45 True fake: not a misassembly (possible transposable element) 18472086 18494995 44830 22021 CM091751.1 scf7180000184248 98.38 True fake: scaffold gap size wrong estimation (local) 18466585 18471881 50434 45134 CM091751.1 scf7180000184248 99.1 True local misassembly 18450237 18466108 66411 50567 CM091751.1 scf7180000184248 98.94 True fake: scaffold gap size wrong estimation (local) 18441193 18450023 75363 66488 CM091751.1 scf7180000184248 97.62 True indel: indel (> 5bp) 18439158 18441146 77359 75366 CM091751.1 scf7180000184248 96.83 True fake: scaffold gap size wrong estimation (local) 18435506 18439004 81019 77539 CM091751.1 scf7180000184248 98.83 True indel: indel (> 5bp) 18430787 18435361 85736 81145 CM091751.1 scf7180000184248 99.06 True fake: scaffold gap size wrong estimation (local) 18421882 18427690 93611 87995 CM091751.1 scf7180000184248 95.83 True fake: scaffold gap size wrong estimation (local) 18383813 18421491 131590 94243 CM091751.1 scf7180000184248 96.55 True fake: scaffold gap size wrong estimation (local) 18379683 18383534 135675 131826 CM091751.1 scf7180000184248 99.22 True fake: scaffold gap size wrong estimation (local) 18346024 18379543 168999 135773 CM091751.1 scf7180000184248 97.76 True fake: scaffold gap size wrong estimation (local) 18321648 18345273 192807 169252 CM091751.1 scf7180000184248 98.85 True fake: scaffold gap size wrong estimation (local) 18318600 18321512 195816 192905 CM091751.1 scf7180000184248 99.59 True fake: scaffold gap size wrong estimation (local) 18300389 18318413 214017 195907 CM091751.1 scf7180000184248 99.04 True local misassembly 18298999 18299791 215440 214649 CM091751.1 scf7180000184248 98.44 True fake: not a misassembly (possible transposable element) 949620 950609 215441 216430 CM091768.1 scf7180000184248 99.39 True fake: not a misassembly (possible transposable element) 18272416 18298790 242332 216524 CM091751.1 scf7180000184248 96.34 True fake: scaffold gap size wrong estimation (local) 18242598 18272216 271921 242520 CM091751.1 scf7180000184248 97.56 True fake: scaffold gap size wrong estimation (local) 18211960 18242314 302357 272031 CM091751.1 scf7180000184248 99.35 True fake: scaffold gap size wrong estimation (local) 18185929 18210972 327896 302889 CM091751.1 scf7180000184248 99.03 True fake: scaffold gap size wrong estimation (local) 18184411 18185614 329274 328071 CM091751.1 scf7180000184248 99.83 True fake: scaffold gap size wrong estimation (local) 18176181 18184176 337486 329497 CM091751.1 scf7180000184248 98.82 True local misassembly 18175283 18176112 338515 337686 CM091751.1 scf7180000184248 99.64 True fake: scaffold gap size wrong estimation (local) 18159403 18174785 354302 338875 CM091751.1 scf7180000184248 99.07 True fake: scaffold gap size wrong estimation (local) 18109220 18159262 404329 354424 CM091751.1 scf7180000184248 98.43 True indel: indel (> 5bp) 18087678 18109048 426328 404518 CM091751.1 scf7180000184248 96.95 True fake: scaffold gap size wrong estimation (local) 18049270 18087470 464609 426491 CM091751.1 scf7180000184248 98.92 True fake: scaffold gap size wrong estimation (local) 17938789 18048118 574811 465360 CM091751.1 scf7180000184248 98.71 True fake: scaffold gap size wrong estimation (local) 17902851 17938963 610930 575263 CM091751.1 scf7180000184248 97.86 True fake: scaffold gap size wrong estimation (local) 17900906 17901851 612643 611698 CM091751.1 scf7180000184248 98.73 True fake: scaffold gap size wrong estimation (local) 17899558 17900256 614377 613679 CM091751.1 scf7180000184248 100.0 True indel: indel (> 5bp) 17898337 17899549 615590 614378 CM091751.1 scf7180000184248 99.42 True indel: indel (<= 5bp) 17897074 17897885 616858 616047 CM091751.1 scf7180000184248 99.51 True indel: indel (<= 5bp) 17895578 17896854 618359 617083 CM091751.1 scf7180000184248 99.37 True indel: indel (> 5bp) 17894148 17895483 619801 618466 CM091751.1 scf7180000184248 99.85 True indel: indel (<= 5bp) 17893236 17894147 620714 619803 CM091751.1 scf7180000184248 98.9 True indel: indel (> 5bp) 17882042 17892822 631871 621149 CM091751.1 scf7180000184248 98.08 True fake: scaffold gap size wrong estimation (local) 17878951 17881811 634964 632101 CM091751.1 scf7180000184248 98.78 True fake: scaffold gap size wrong estimation (local) 17794883 17877983 718509 635525 CM091751.1 scf7180000184248 98.98 True local misassembly 17791658 17794601 721493 718555 CM091751.1 scf7180000184248 99.73 True indel: indel (> 5bp) 17764970 17791551 748182 721622 CM091751.1 scf7180000184248 99.84 True fake: not a misassembly (possible transposable element) 3383901 3384474 749195 748626 CM091768.1 scf7180000184248 97.39 True fake: not a misassembly (possible transposable element) 17762592 17763236 749940 749296 CM091751.1 scf7180000184248 95.81 True fake: scaffold gap size wrong estimation (local) 17760122 17762177 752369 750314 CM091751.1 scf7180000184248 99.9 True fake: scaffold gap size wrong estimation (local) 17759612 17760121 752906 752397 CM091751.1 scf7180000184248 98.63 True fake: scaffold gap size wrong estimation (local) 17758326 17759611 754205 752920 CM091751.1 scf7180000184248 98.44 True indel: indel (<= 5bp) 17757098 17758324 755432 754206 CM091751.1 scf7180000184248 100.0 True indel: indel (> 5bp) 17753976 17757057 758514 755433 CM091751.1 scf7180000184248 100.0 True fake: scaffold gap size wrong estimation (local) 17752302 17753825 760513 758990 CM091751.1 scf7180000184248 100.0 True fake: scaffold gap size wrong estimation (local) 17749243 17752301 763960 760902 CM091751.1 scf7180000184248 99.31 True fake: scaffold gap size wrong estimation (local) 17734997 17748450 777792 764343 CM091751.1 scf7180000184248 99.96 True fake: scaffold gap size wrong estimation (local) 17731299 17734037 780872 778132 CM091751.1 scf7180000184248 99.89 True fake: scaffold gap size wrong estimation (local) 17701077 17731121 811082 781035 CM091751.1 scf7180000184248 99.93 True fake: scaffold gap size wrong estimation (local) 17696143 17700288 815536 811522 CM091751.1 scf7180000184248 96.49 True fake: not a misassembly (possible transposable element) 5281500 5282542 815537 816579 CM091751.1 scf7180000184248 99.44 True fake: not a misassembly (possible transposable element) 17691540 17696269 821398 816670 CM091751.1 scf7180000184248 99.96 True translocation, scaffold gap is present 10990515 10994836 822816 827345 CM091764.1 scf7180000184248 95.74 True translocation 6925874 7004068 907183 827473 CM091759.1 scf7180000184248 96.75 True fake: scaffold gap size wrong estimation (local) 6881985 6925329 950496 907329 CM091759.1 scf7180000184248 98.59 True fake: scaffold gap size wrong estimation (local) 6869073 6881833 963398 950639 CM091759.1 scf7180000184248 99.69 True fake: scaffold gap size wrong estimation (local) 6741493 6868641 1090773 963495 CM091759.1 scf7180000184248 99.76 True fake: not a misassembly (possible transposable element) 11821794 11823306 1092312 1090795 CM091758.1 scf7180000184248 99.35 True fake: not a misassembly (possible transposable element) 6589577 6741431 1244212 1092313 CM091759.1 scf7180000184248 99.76 True CONTIG scf7180000184248 1245551 misassembled 414092 416217 2132 1 CM091754.1 scf7180000184249 98.66 True translocation 14357925 14403919 2133 47876 CM091753.1 scf7180000184249 98.63 True fake: scaffold gap size wrong estimation (local) 14404399 14414198 48068 57876 CM091753.1 scf7180000184249 99.32 True fake: scaffold gap size wrong estimation (local) 14414605 14432061 58001 75621 CM091753.1 scf7180000184249 98.38 True fake: scaffold gap size wrong estimation (local) 14433442 14435966 76886 79416 CM091753.1 scf7180000184249 99.17 True fake: scaffold gap size wrong estimation (local) 14436088 14525694 79525 169074 CM091753.1 scf7180000184249 99.14 True fake: scaffold gap size wrong estimation (local) 14525847 14574287 169212 216610 CM091753.1 scf7180000184249 95.68 True local misassembly 14574449 14583140 216682 225333 CM091753.1 scf7180000184249 98.6 True fake: scaffold gap size wrong estimation (local) 14583253 14602798 225426 245018 CM091753.1 scf7180000184249 99.35 True fake: scaffold gap size wrong estimation (local) 14603374 14635461 245395 277488 CM091753.1 scf7180000184249 98.9 True fake: scaffold gap size wrong estimation (local) 14637385 14654385 278623 295243 CM091753.1 scf7180000184249 96.27 True fake: scaffold gap size wrong estimation (local) 14655188 14673972 295705 314518 CM091753.1 scf7180000184249 99.01 True fake: scaffold gap size wrong estimation (local) 14674252 14699867 314740 340088 CM091753.1 scf7180000184249 98.45 True fake: scaffold gap size wrong estimation (local) 14700618 14745145 340369 384909 CM091753.1 scf7180000184249 99.73 True fake: scaffold gap size wrong estimation (local) 14745425 14747237 385026 386838 CM091753.1 scf7180000184249 99.56 True fake: scaffold gap size wrong estimation (local) 14748098 14748749 387494 388145 CM091753.1 scf7180000184249 100.0 True indel: indel (<= 5bp) 14748750 14749460 388147 388857 CM091753.1 scf7180000184249 98.73 True indel: indel (> 5bp) 14749469 14750359 388872 389762 CM091753.1 scf7180000184249 98.99 True indel: indel (<= 5bp) 14750360 14751395 389764 390799 CM091753.1 scf7180000184249 99.52 True indel: indel (<= 5bp) 14751396 14752227 390801 391632 CM091753.1 scf7180000184249 99.76 True indel: indel (> 5bp) 14752243 14752816 391633 392206 CM091753.1 scf7180000184249 98.95 True local misassembly 14753365 14754454 392285 393374 CM091753.1 scf7180000184249 97.61 True indel: indel (<= 5bp) 14754460 14757880 393375 396795 CM091753.1 scf7180000184249 99.77 True indel: indel (<= 5bp) 14757881 14758514 396797 397430 CM091753.1 scf7180000184249 98.58 True indel: indel (<= 5bp) 14758993 14759609 397910 398526 CM091753.1 scf7180000184249 100.0 True indel: indel (<= 5bp) 14759610 14760599 398528 399517 CM091753.1 scf7180000184249 99.49 True local misassembly 14761393 14762171 400036 400814 CM091753.1 scf7180000184249 99.1 True indel: indel (<= 5bp) 14762174 14764539 400815 403180 CM091753.1 scf7180000184249 99.83 True indel: indel (<= 5bp) 14764542 14765244 403181 403883 CM091753.1 scf7180000184249 99.57 True local misassembly 14765899 14766814 404539 405454 CM091753.1 scf7180000184249 99.24 True local misassembly 14767031 14767879 405497 406345 CM091753.1 scf7180000184249 97.29 True fake: scaffold gap size wrong estimation (local) 14768774 14770147 407034 408411 CM091753.1 scf7180000184249 98.91 True fake: scaffold gap size wrong estimation (local) 14771194 14794601 409208 432597 CM091753.1 scf7180000184249 99.2 True fake: scaffold gap size wrong estimation (local) 14795864 14796673 433599 434408 CM091753.1 scf7180000184249 99.38 True fake: scaffold gap size wrong estimation (local) 14797674 14809726 435075 446979 CM091753.1 scf7180000184249 97.97 True fake: scaffold gap size wrong estimation (local) 14809893 14813059 447132 450305 CM091753.1 scf7180000184249 99.15 True indel: indel (> 5bp) 14813130 14822716 450366 459594 CM091753.1 scf7180000184249 95.12 True fake: scaffold gap size wrong estimation (local) 14822918 14826864 459949 463902 CM091753.1 scf7180000184249 98.08 True fake: scaffold gap size wrong estimation (local) 14828305 14829104 464862 465661 CM091753.1 scf7180000184249 98.88 True indel: indel (<= 5bp) 14829106 14831267 465662 467823 CM091753.1 scf7180000184249 99.07 True local misassembly 14831676 14833358 467824 469506 CM091753.1 scf7180000184249 99.64 True indel: indel (> 5bp) 14833693 14834438 469869 470614 CM091753.1 scf7180000184249 98.93 True indel: indel (<= 5bp) 14834690 14835350 470861 471521 CM091753.1 scf7180000184249 98.18 True indel: indel (<= 5bp) 14835351 14837278 471526 473453 CM091753.1 scf7180000184249 99.59 True fake: scaffold gap size wrong estimation (local) 14838580 14936427 474098 571685 CM091753.1 scf7180000184249 98.94 True fake: scaffold gap size wrong estimation (local) 14936668 15001411 571852 636006 CM091753.1 scf7180000184249 98.25 True fake: scaffold gap size wrong estimation (local) 15001665 15028078 636244 662644 CM091753.1 scf7180000184249 99.24 True fake: scaffold gap size wrong estimation (local) 15028266 15077974 662820 712476 CM091753.1 scf7180000184249 99.34 True fake: scaffold gap size wrong estimation (local) 15078851 15155178 713004 789246 CM091753.1 scf7180000184249 98.87 True indel: indel (> 5bp) 15155256 15191118 789332 824969 CM091753.1 scf7180000184249 98.62 True fake: scaffold gap size wrong estimation (local) 15191282 15213398 825117 846873 CM091753.1 scf7180000184249 97.64 True fake: scaffold gap size wrong estimation (local) 15213945 15248290 847080 881070 CM091753.1 scf7180000184249 98.25 True indel: indel (<= 5bp) 15248345 15313640 881124 946271 CM091753.1 scf7180000184249 98.79 True fake: scaffold gap size wrong estimation (local) 15313855 15324146 946453 956768 CM091753.1 scf7180000184249 99.17 True fake: scaffold gap size wrong estimation (local) 15325456 15370258 958191 1003001 CM091753.1 scf7180000184249 99.23 True fake: scaffold gap size wrong estimation (local) 15370363 15433292 1003099 1065837 CM091753.1 scf7180000184249 99.01 True indel: indel (> 5bp) 15433448 15436209 1065910 1068673 CM091753.1 scf7180000184249 99.42 True fake: scaffold gap size wrong estimation (local) 15436399 15468350 1068840 1100829 CM091753.1 scf7180000184249 99.24 True indel: indel (> 5bp) 15468396 15487688 1100907 1120150 CM091753.1 scf7180000184249 98.84 True fake: scaffold gap size wrong estimation (local) 15487756 15513860 1120205 1146314 CM091753.1 scf7180000184249 99.38 True indel: indel (> 5bp) 15513889 15594007 1146353 1226385 CM091753.1 scf7180000184249 98.0 True fake: scaffold gap size wrong estimation (local) 15594260 15609752 1227081 1242593 CM091753.1 scf7180000184249 99.19 True fake: scaffold gap size wrong estimation (local) 15609967 15662047 1242764 1294921 CM091753.1 scf7180000184249 99.4 True fake: scaffold gap size wrong estimation (local) 15662265 15677183 1295117 1309858 CM091753.1 scf7180000184249 98.26 True fake: scaffold gap size wrong estimation (local) 15677553 15703930 1309950 1336352 CM091753.1 scf7180000184249 99.31 True fake: scaffold gap size wrong estimation (local) 15705118 15712594 1336977 1344458 CM091753.1 scf7180000184249 99.44 True fake: scaffold gap size wrong estimation (local) 15712642 15718751 1344540 1350651 CM091753.1 scf7180000184249 99.46 True fake: scaffold gap size wrong estimation (local) 15718946 15747531 1350793 1379162 CM091753.1 scf7180000184249 98.56 True indel: indel (<= 5bp) 15747613 15912384 1379242 1543583 CM091753.1 scf7180000184249 99.08 True fake: scaffold gap size wrong estimation (local) 15912606 16037676 1543756 1669018 CM091753.1 scf7180000184249 99.35 True indel: indel (> 5bp) 16037906 16131534 1669173 1762888 CM091753.1 scf7180000184249 99.05 True fake: scaffold gap size wrong estimation (local) 16132231 16133393 1763648 1764803 CM091753.1 scf7180000184249 98.03 True fake: scaffold gap size wrong estimation (local) 16135260 16137013 1766664 1768418 CM091753.1 scf7180000184249 99.49 True fake: scaffold gap size wrong estimation (local) 16138840 16140857 1769756 1771822 CM091753.1 scf7180000184249 95.87 True relocation, scaffold gap is present, inconsistency = 14808 16156584 16157187 1772741 1773344 CM091753.1 scf7180000184249 95.03 True indel: indel (<= 5bp) 16157189 16158547 1773345 1774703 CM091753.1 scf7180000184249 97.79 True relocation, scaffold gap is present, inconsistency = 30748 16189956 16191673 1775364 1777081 CM091753.1 scf7180000184249 97.96 True fake: scaffold gap size wrong estimation (local) 16192832 16193723 1777729 1778620 CM091753.1 scf7180000184249 98.77 True relocation, scaffold gap is present, inconsistency = 10076 16204054 16205254 1778875 1780075 CM091753.1 scf7180000184249 99.33 True local misassembly 16205864 16207936 1780681 1782753 CM091753.1 scf7180000184249 99.37 True indel: indel (<= 5bp) 16207940 16209521 1782754 1784335 CM091753.1 scf7180000184249 99.43 True relocation, scaffold gap is present, inconsistency = -9828 16200055 16201721 1784697 1786363 CM091753.1 scf7180000184249 99.58 True translocation, scaffold gap is present 12918346 12919238 1787323 1786432 CM091754.1 scf7180000184249 99.06 True translocation 16212041 16214324 1787324 1789608 CM091753.1 scf7180000184249 98.95 True CONTIG scf7180000184249 1789924 misassembled 12253599 12464883 211366 1 CM091751.1 scf7180000184250 99.4 True indel: indel (<= 5bp) 12102441 12253532 362490 211436 CM091751.1 scf7180000184250 99.36 True indel: indel (> 5bp) 12048804 12102404 416209 362577 CM091751.1 scf7180000184250 99.58 True indel: indel (> 5bp) 12033886 12048772 431072 416235 CM091751.1 scf7180000184250 98.84 True indel: indel (<= 5bp) 11992580 12033786 472481 431171 CM091751.1 scf7180000184250 99.27 True fake: scaffold gap size wrong estimation (local) 11927280 11991953 537236 472724 CM091751.1 scf7180000184250 99.13 True local misassembly 11898254 11926581 566319 537989 CM091751.1 scf7180000184250 99.43 True fake: scaffold gap size wrong estimation (local) 11727935 11897930 735876 566597 CM091751.1 scf7180000184250 98.82 True fake: scaffold gap size wrong estimation (local) 11702100 11727295 761345 736122 CM091751.1 scf7180000184250 99.81 True fake: scaffold gap size wrong estimation (local) 11648796 11700475 813635 762808 CM091751.1 scf7180000184250 98.16 True indel: indel (> 5bp) 11563927 11648689 898530 813721 CM091751.1 scf7180000184250 99.47 True indel: indel (> 5bp) 11554385 11563855 908051 898577 CM091751.1 scf7180000184250 99.52 True indel: indel (> 5bp) 11426862 11554327 1037211 908138 CM091751.1 scf7180000184250 98.24 True indel: indel (> 5bp) 11250913 11426840 1213056 1037249 CM091751.1 scf7180000184250 99.24 True fake: scaffold gap size wrong estimation (local) 11245963 11250688 1217931 1213203 CM091751.1 scf7180000184250 99.43 True fake: scaffold gap size wrong estimation (local) 11008813 11245870 1455305 1218020 CM091751.1 scf7180000184250 99.21 True indel: indel (> 5bp) 10898007 11008748 1566216 1455416 CM091751.1 scf7180000184250 99.38 True indel: indel (> 5bp) 10748083 10897966 1716265 1566271 CM091751.1 scf7180000184250 99.49 True fake: scaffold gap size wrong estimation (local) 10697761 10747963 1766519 1716359 CM091751.1 scf7180000184250 99.41 True fake: scaffold gap size wrong estimation (local) 10624784 10697594 1839483 1766653 CM091751.1 scf7180000184250 99.54 True fake: scaffold gap size wrong estimation (local) 10599105 10624333 1864939 1839703 CM091751.1 scf7180000184250 99.91 True indel: indel (> 5bp) 10518836 10599062 1945326 1864992 CM091751.1 scf7180000184250 99.56 True fake: scaffold gap size wrong estimation (local) 10468400 10517894 1995233 1945684 CM091751.1 scf7180000184250 99.23 True fake: scaffold gap size wrong estimation (local) 10466548 10467087 1996653 1996114 CM091751.1 scf7180000184250 99.63 True indel: indel (<= 5bp) 10465956 10466547 1997246 1996655 CM091751.1 scf7180000184250 99.49 True fake: scaffold gap size wrong estimation (local) 10463127 10464256 2000104 1998975 CM091751.1 scf7180000184250 97.52 True local misassembly 10461602 10462697 2001200 2000105 CM091751.1 scf7180000184250 99.45 True fake: scaffold gap size wrong estimation (local) 10345584 10461345 2117096 2001364 CM091751.1 scf7180000184250 99.8 True fake: scaffold gap size wrong estimation (local) 10344280 10345073 2118373 2117580 CM091751.1 scf7180000184250 99.12 True fake: scaffold gap size wrong estimation (local) 10342633 10343439 2119839 2119033 CM091751.1 scf7180000184250 99.63 True indel: indel (<= 5bp) 10342072 10342630 2120398 2119840 CM091751.1 scf7180000184250 99.82 True fake: scaffold gap size wrong estimation (local) 10326555 10341883 2136097 2120697 CM091751.1 scf7180000184250 98.48 True indel: indel (> 5bp) 10247294 10326220 2215445 2136353 CM091751.1 scf7180000184250 99.06 True indel: indel (> 5bp) 10221199 10247222 2241583 2215525 CM091751.1 scf7180000184250 99.48 True fake: scaffold gap size wrong estimation (local) 10171641 10220722 2290695 2241643 CM091751.1 scf7180000184250 99.49 True CONTIG scf7180000184250 2290709 correct 4195758 4196565 825 1 CM091762.1 scf7180000184251 96.78 True relocation, scaffold gap is present, inconsistency = -370244 4517122 4565940 49463 887 CM091762.1 scf7180000184251 99.07 True fake: scaffold gap size wrong estimation (local) 4303989 4516201 257145 50125 CM091762.1 scf7180000184251 96.81 True fake: scaffold gap size wrong estimation (local) 4224178 4303814 336940 257304 CM091762.1 scf7180000184251 99.42 True fake: not a misassembly (possible transposable element) 4208951 4210104 338113 336961 CM091762.1 scf7180000184251 98.55 True fake: not a misassembly (possible transposable element) 4220795 4223957 341280 338114 CM091762.1 scf7180000184251 98.24 True local misassembly 4217273 4220164 344421 341525 CM091762.1 scf7180000184251 98.72 True relocation, scaffold gap is present, inconsistency = 13464 4201216 4203745 347014 344485 CM091762.1 scf7180000184251 99.29 True indel: indel (<= 5bp) 4200018 4200923 348210 347305 CM091762.1 scf7180000184251 99.67 True fake: scaffold gap size wrong estimation (local) 4197099 4198772 350449 348769 CM091762.1 scf7180000184251 99.22 True fake: scaffold gap size wrong estimation (local) 4183309 4195802 364578 352078 CM091762.1 scf7180000184251 99.26 True translocation 2107993 2109227 365819 364579 CM091764.1 scf7180000184251 98.62 True fake: scaffold gap size wrong estimation (local) 2104207 2107618 369512 366101 CM091764.1 scf7180000184251 99.94 True fake: scaffold gap size wrong estimation (local) 2102169 2104119 371582 369632 CM091764.1 scf7180000184251 99.85 True fake: scaffold gap size wrong estimation (local) 2100934 2101444 372219 371709 CM091764.1 scf7180000184251 100.0 True fake: scaffold gap size wrong estimation (local) 2099118 2100072 373623 372669 CM091764.1 scf7180000184251 100.0 True fake: scaffold gap size wrong estimation (local) 2097516 2098960 375560 374116 CM091764.1 scf7180000184251 98.73 True translocation 16320439 16322690 377812 375561 CM091757.1 scf7180000184251 99.56 True fake: scaffold gap size wrong estimation (local) 16317187 16320042 381297 378442 CM091757.1 scf7180000184251 99.3 True local misassembly 16315909 16316470 381859 381298 CM091757.1 scf7180000184251 98.58 True indel: indel (<= 5bp) 16314237 16315907 383530 381860 CM091757.1 scf7180000184251 99.34 True indel: indel (<= 5bp) 16313459 16314233 384305 383531 CM091757.1 scf7180000184251 99.87 True fake: scaffold gap size wrong estimation (local) 16311414 16312259 386041 385196 CM091757.1 scf7180000184251 99.88 True fake: scaffold gap size wrong estimation (local) 16307261 16309473 389711 387508 CM091757.1 scf7180000184251 99.35 True fake: scaffold gap size wrong estimation (local) 16302284 16306386 394322 390185 CM091757.1 scf7180000184251 99.61 True fake: scaffold gap size wrong estimation (local) 16299187 16301710 397298 394781 CM091757.1 scf7180000184251 99.56 True fake: scaffold gap size wrong estimation (local) 16297154 16299074 399426 397506 CM091757.1 scf7180000184251 96.77 True local misassembly 16295715 16296701 400413 399427 CM091757.1 scf7180000184251 100.0 True indel: indel (<= 5bp) 16293519 16295713 402608 400414 CM091757.1 scf7180000184251 99.68 True fake: scaffold gap size wrong estimation (local) 16291349 16293518 404791 402622 CM091757.1 scf7180000184251 99.03 True local misassembly 16290310 16290892 405374 404792 CM091757.1 scf7180000184251 100.0 True fake: scaffold gap size wrong estimation (local) 16285032 16286053 409533 408512 CM091757.1 scf7180000184251 100.0 True fake: scaffold gap size wrong estimation (local) 16282331 16284237 412140 410236 CM091757.1 scf7180000184251 99.37 True fake: not a misassembly (possible transposable element) 11803234 11803883 412141 412791 CM091758.1 scf7180000184251 99.63 True fake: not a misassembly (possible transposable element) 16281408 16282354 413824 412878 CM091757.1 scf7180000184251 100.0 True fake: scaffold gap size wrong estimation (local) 16276431 16279442 418327 415285 CM091757.1 scf7180000184251 97.87 True translocation, scaffold gap is present 3975613 3976193 418378 418959 CM091764.1 scf7180000184251 98.28 True fake: scaffold gap size wrong estimation (local) 3977437 4123430 420018 565712 CM091764.1 scf7180000184251 99.34 True fake: scaffold gap size wrong estimation (local) 4136015 4179820 572801 616592 CM091764.1 scf7180000184251 99.49 True fake: scaffold gap size wrong estimation (local) 4182525 4185131 619121 621822 CM091764.1 scf7180000184251 96.81 True fake: scaffold gap size wrong estimation (local) 4186039 4236128 622240 672363 CM091764.1 scf7180000184251 99.29 True fake: scaffold gap size wrong estimation (local) 4236461 4256581 672511 692456 CM091764.1 scf7180000184251 97.88 True fake: scaffold gap size wrong estimation (local) 4256790 4313597 692646 749178 CM091764.1 scf7180000184251 98.78 True fake: scaffold gap size wrong estimation (local) 4313782 4341780 749657 777487 CM091764.1 scf7180000184251 98.62 True fake: scaffold gap size wrong estimation (local) 4341968 4479596 777635 916509 CM091764.1 scf7180000184251 98.11 True indel: indel (> 5bp) 4479662 4623877 916535 1060745 CM091764.1 scf7180000184251 99.5 True fake: scaffold gap size wrong estimation (local) 4623973 4911071 1060847 1348189 CM091764.1 scf7180000184251 99.39 True fake: scaffold gap size wrong estimation (local) 4911284 4995096 1348287 1432123 CM091764.1 scf7180000184251 99.43 True local misassembly 4995356 5057266 1432291 1494118 CM091764.1 scf7180000184251 99.21 True fake: scaffold gap size wrong estimation (local) 5057720 5092075 1494289 1528656 CM091764.1 scf7180000184251 99.27 True fake: scaffold gap size wrong estimation (local) 5092227 5148517 1528756 1584817 CM091764.1 scf7180000184251 99.03 True fake: scaffold gap size wrong estimation (local) 5148674 5374279 1584916 1810893 CM091764.1 scf7180000184251 99.31 True fake: scaffold gap size wrong estimation (local) 5374463 5381789 1811035 1818288 CM091764.1 scf7180000184251 98.73 True fake: scaffold gap size wrong estimation (local) 5381460 5382951 1818787 1820271 CM091764.1 scf7180000184251 96.53 True fake: not a misassembly (possible transposable element) 16275791 16276466 1820947 1820272 CM091757.1 scf7180000184251 99.87 True fake: not a misassembly (possible transposable element) 5383093 5384298 1820988 1822193 CM091764.1 scf7180000184251 99.34 True local misassembly 5384528 5385406 1822194 1823072 CM091764.1 scf7180000184251 97.72 True translocation, scaffold gap is present 16271836 16273272 1824534 1823093 CM091757.1 scf7180000184251 98.89 True fake: scaffold gap size wrong estimation (local) 16267023 16270129 1828844 1825722 CM091757.1 scf7180000184251 99.9 True fake: scaffold gap size wrong estimation (local) 16264781 16266842 1831156 1829095 CM091757.1 scf7180000184251 99.9 True fake: scaffold gap size wrong estimation (local) 16262500 16264425 1833529 1831604 CM091757.1 scf7180000184251 99.84 True indel: indel (> 5bp) 16261665 16262486 1834384 1833563 CM091757.1 scf7180000184251 95.01 True fake: scaffold gap size wrong estimation (local) 16259906 16261244 1835983 1834645 CM091757.1 scf7180000184251 100.0 True fake: scaffold gap size wrong estimation (local) 16253491 16255544 1841889 1839824 CM091757.1 scf7180000184251 99.76 True fake: scaffold gap size wrong estimation (local) 16244802 16247957 1849274 1846116 CM091757.1 scf7180000184251 99.81 True fake: scaffold gap size wrong estimation (local) 16228332 16244331 1865715 1849420 CM091757.1 scf7180000184251 96.96 True fake: scaffold gap size wrong estimation (local) 16224760 16227364 1869412 1866808 CM091757.1 scf7180000184251 100.0 True translocation, scaffold gap is present 1455435 1456197 1870195 1869433 CM091764.1 scf7180000184251 100.0 True CONTIG scf7180000184251 1870195 misassembled 3662838 3719697 63579 6683 CM091763.1 scf7180000184252 98.61 True fake: scaffold gap size wrong estimation (local) 3508799 3662625 217748 63705 CM091763.1 scf7180000184252 99.47 True fake: scaffold gap size wrong estimation (local) 3373270 3508456 352131 217870 CM091763.1 scf7180000184252 98.92 True indel: indel (> 5bp) 3340445 3373208 384970 352165 CM091763.1 scf7180000184252 99.49 True fake: scaffold gap size wrong estimation (local) 3338611 3339535 386659 385735 CM091763.1 scf7180000184252 99.78 True indel: indel (<= 5bp) 3336127 3338610 389144 386661 CM091763.1 scf7180000184252 99.76 True indel: indel (<= 5bp) 3334831 3336126 390441 389146 CM091763.1 scf7180000184252 99.46 True indel: indel (<= 5bp) 3331925 3334830 393348 390443 CM091763.1 scf7180000184252 99.83 True indel: indel (<= 5bp) 3328600 3331924 396674 393350 CM091763.1 scf7180000184252 99.82 True indel: indel (<= 5bp) 3326327 3328537 398943 396733 CM091763.1 scf7180000184252 99.41 True local misassembly 3323945 3325827 401327 399445 CM091763.1 scf7180000184252 99.79 True indel: indel (<= 5bp) 3322682 3323648 402592 401626 CM091763.1 scf7180000184252 100.0 True indel: indel (<= 5bp) 3321797 3322677 403473 402593 CM091763.1 scf7180000184252 99.89 True indel: indel (<= 5bp) 3320567 3321796 404704 403475 CM091763.1 scf7180000184252 99.76 True indel: indel (<= 5bp) 3319845 3320566 405427 404706 CM091763.1 scf7180000184252 99.86 True indel: indel (> 5bp) 3319131 3319830 406127 405428 CM091763.1 scf7180000184252 100.0 True indel: indel (<= 5bp) 3313203 3319129 412054 406128 CM091763.1 scf7180000184252 99.8 True indel: indel (<= 5bp) 3310676 3313072 414578 412182 CM091763.1 scf7180000184252 99.75 True local misassembly 3308242 3309571 417013 415684 CM091763.1 scf7180000184252 99.85 True indel: indel (<= 5bp) 3307474 3308240 417780 417014 CM091763.1 scf7180000184252 99.61 True indel: stretch of mismatches 3306410 3307450 418844 417804 CM091763.1 scf7180000184252 99.62 True indel: indel (<= 5bp) 3303866 3306409 421389 418846 CM091763.1 scf7180000184252 99.84 True indel: stretch of mismatches 3301490 3303808 423765 421447 CM091763.1 scf7180000184252 99.87 True local misassembly 3300166 3300837 425089 424418 CM091763.1 scf7180000184252 99.7 True indel: indel (<= 5bp) 3298625 3299867 426632 425390 CM091763.1 scf7180000184252 99.76 True indel: indel (<= 5bp) 3295785 3298624 429473 426634 CM091763.1 scf7180000184252 99.75 True local misassembly 3290948 3292077 430603 429474 CM091763.1 scf7180000184252 99.82 True indel: indel (<= 5bp) 3288092 3290946 433458 430604 CM091763.1 scf7180000184252 99.68 True indel: indel (<= 5bp) 3182061 3288027 539497 433526 CM091763.1 scf7180000184252 99.43 True local misassembly 3116394 3181526 605382 540216 CM091763.1 scf7180000184252 99.55 True fake: scaffold gap size wrong estimation (local) 3060522 3115476 661114 606138 CM091763.1 scf7180000184252 99.56 True indel: indel (> 5bp) 2983317 3060437 738315 661150 CM091763.1 scf7180000184252 99.42 True local misassembly 2981761 2982422 739089 738428 CM091763.1 scf7180000184252 99.7 True local misassembly 2928908 2981304 791690 739271 CM091763.1 scf7180000184252 99.47 True fake: scaffold gap size wrong estimation (local) 2916669 2928760 803668 791778 CM091763.1 scf7180000184252 97.8 True fake: scaffold gap size wrong estimation (local) 2862324 2915689 857568 804175 CM091763.1 scf7180000184252 99.44 True fake: scaffold gap size wrong estimation (local) 2836267 2861720 883293 857832 CM091763.1 scf7180000184252 99.02 True indel: indel (> 5bp) 2830550 2836250 889018 883321 CM091763.1 scf7180000184252 97.85 True fake: scaffold gap size wrong estimation (local) 2829108 2830419 890424 889114 CM091763.1 scf7180000184252 98.63 True fake: scaffold gap size wrong estimation (local) 2826250 2827787 893103 891564 CM091763.1 scf7180000184252 99.68 True indel: indel (> 5bp) 2825515 2826080 893831 893266 CM091763.1 scf7180000184252 100.0 True fake: scaffold gap size wrong estimation (local) 2821696 2823453 897251 895473 CM091763.1 scf7180000184252 97.92 True fake: scaffold gap size wrong estimation (local) 2818913 2819679 899921 899155 CM091763.1 scf7180000184252 98.7 True fake: scaffold gap size wrong estimation (local) 2815274 2817106 901935 900103 CM091763.1 scf7180000184252 98.91 True relocation, scaffold gap is present, inconsistency = 10950 2797841 2802272 908436 903987 CM091763.1 scf7180000184252 97.83 True fake: scaffold gap size wrong estimation (local) 2796626 2797301 909456 908781 CM091763.1 scf7180000184252 99.7 True indel: indel (<= 5bp) 2795976 2796625 910108 909459 CM091763.1 scf7180000184252 98.92 True indel: indel (> 5bp) 2795056 2795747 911021 910330 CM091763.1 scf7180000184252 99.86 True indel: indel (> 5bp) 2794168 2794739 911918 911347 CM091763.1 scf7180000184252 99.83 True indel: indel (> 5bp) 2793123 2793822 912933 912234 CM091763.1 scf7180000184252 99.86 True indel: indel (> 5bp) 2792032 2792641 914013 913404 CM091763.1 scf7180000184252 99.51 True indel: indel (> 5bp) 2790428 2792031 915623 914020 CM091763.1 scf7180000184252 99.31 True indel: indel (<= 5bp) 2789670 2790424 916378 915624 CM091763.1 scf7180000184252 98.54 True fake: scaffold gap size wrong estimation (local) 2783925 2784750 921276 920450 CM091763.1 scf7180000184252 99.4 True fake: scaffold gap size wrong estimation (local) 2708375 2782650 995824 922648 CM091763.1 scf7180000184252 98.07 True fake: scaffold gap size wrong estimation (local) 2593785 2707777 1109925 996113 CM091763.1 scf7180000184252 99.52 True fake: scaffold gap size wrong estimation (local) 2497773 2593678 1205896 1110041 CM091763.1 scf7180000184252 99.57 True fake: scaffold gap size wrong estimation (local) 2486332 2497647 1217323 1206001 CM091763.1 scf7180000184252 99.27 True fake: scaffold gap size wrong estimation (local) 2466648 2485683 1236485 1217444 CM091763.1 scf7180000184252 99.74 True local misassembly 2441535 2463060 1258045 1236486 CM091763.1 scf7180000184252 99.64 True fake: scaffold gap size wrong estimation (local) 2316627 2441434 1382665 1258143 CM091763.1 scf7180000184252 99.5 True fake: scaffold gap size wrong estimation (local) 2196286 2316475 1503039 1382842 CM091763.1 scf7180000184252 99.81 True fake: scaffold gap size wrong estimation (local) 2194722 2195522 1504433 1503632 CM091763.1 scf7180000184252 99.5 True fake: scaffold gap size wrong estimation (local) 2191493 2192975 1507214 1505731 CM091763.1 scf7180000184252 99.53 True fake: scaffold gap size wrong estimation (local) 2095381 2191006 1603003 1507667 CM091763.1 scf7180000184252 99.23 True fake: scaffold gap size wrong estimation (local) 2088607 2094512 1609244 1603409 CM091763.1 scf7180000184252 97.85 True fake: scaffold gap size wrong estimation (local) 2086950 2087859 1610615 1609705 CM091763.1 scf7180000184252 99.23 True fake: scaffold gap size wrong estimation (local) 2081443 2085783 1615817 1611475 CM091763.1 scf7180000184252 99.68 True fake: scaffold gap size wrong estimation (local) 2064279 2081351 1633015 1615895 CM091763.1 scf7180000184252 99.25 True fake: scaffold gap size wrong estimation (local) 2048819 2063258 1647634 1633475 CM091763.1 scf7180000184252 97.19 True indel: indel (<= 5bp) 2047038 2048632 1649412 1647818 CM091763.1 scf7180000184252 95.67 True fake: scaffold gap size wrong estimation (local) 2019462 2046138 1676504 1649839 CM091763.1 scf7180000184252 98.87 True indel: indel (> 5bp) 2009017 2019427 1686943 1676548 CM091763.1 scf7180000184252 99.58 True fake: scaffold gap size wrong estimation (local) 1994843 2008627 1700890 1687104 CM091763.1 scf7180000184252 99.86 True fake: scaffold gap size wrong estimation (local) 1992967 1994057 1702385 1701295 CM091763.1 scf7180000184252 96.7 True fake: scaffold gap size wrong estimation (local) 1945984 1990563 1749150 1704486 CM091763.1 scf7180000184252 99.56 True fake: scaffold gap size wrong estimation (local) 1942249 1945302 1752636 1749579 CM091763.1 scf7180000184252 99.41 True fake: scaffold gap size wrong estimation (local) 1930764 1942034 1763788 1752758 CM091763.1 scf7180000184252 97.52 True fake: scaffold gap size wrong estimation (local) 1866569 1930669 1827954 1763877 CM091763.1 scf7180000184252 99.28 True fake: scaffold gap size wrong estimation (local) 1865019 1865525 1829644 1829138 CM091763.1 scf7180000184252 100.0 True fake: scaffold gap size wrong estimation (local) 1863379 1864077 1831427 1830729 CM091763.1 scf7180000184252 98.28 True fake: scaffold gap size wrong estimation (local) 1862511 1863087 1832360 1831784 CM091763.1 scf7180000184252 99.13 True translocation, scaffold gap is present 415559 433079 1850909 1833493 CM091755.1 scf7180000184252 99.27 True fake: not a misassembly (possible transposable element) 10983483 10985031 1852478 1850930 CM091763.1 scf7180000184252 100.0 True fake: not a misassembly (possible transposable element) 350661 415287 1917084 1852479 CM091755.1 scf7180000184252 99.59 True indel: indel (> 5bp) 341562 350448 1926165 1917288 CM091755.1 scf7180000184252 99.86 True fake: scaffold gap size wrong estimation (local) 323102 340606 1943880 1926655 CM091755.1 scf7180000184252 98.35 True fake: scaffold gap size wrong estimation (local) 289059 322848 1977880 1944074 CM091755.1 scf7180000184252 99.91 True fake: scaffold gap size wrong estimation (local) 272597 288916 1994315 1977997 CM091755.1 scf7180000184252 99.9 True fake: scaffold gap size wrong estimation (local) 254388 272068 2012219 1994504 CM091755.1 scf7180000184252 99.85 True fake: scaffold gap size wrong estimation (local) 200045 254205 2066427 2012365 CM091755.1 scf7180000184252 99.54 True fake: scaffold gap size wrong estimation (local) 81031 199876 2185252 2066520 CM091755.1 scf7180000184252 99.79 True fake: scaffold gap size wrong estimation (local) 65507 80796 2200758 2185503 CM091755.1 scf7180000184252 99.74 True fake: scaffold gap size wrong estimation (local) 57254 64384 2208979 2201843 CM091755.1 scf7180000184252 99.22 True CONTIG scf7180000184252 2208979 misassembled 5449988 5521254 27 71355 CM091757.1 scf7180000184253 99.57 True fake: scaffold gap size wrong estimation (local) 5521448 5660133 71490 210500 CM091757.1 scf7180000184253 99.43 True fake: scaffold gap size wrong estimation (local) 5660373 5716813 210701 267177 CM091757.1 scf7180000184253 99.6 True indel: indel (<= 5bp) 5716913 5751999 267276 302372 CM091757.1 scf7180000184253 99.56 True indel: indel (> 5bp) 5752209 5762196 302618 312625 CM091757.1 scf7180000184253 99.2 True indel: indel (> 5bp) 5762225 5807046 312709 357559 CM091757.1 scf7180000184253 99.56 True fake: scaffold gap size wrong estimation (local) 5807096 5889234 357598 439555 CM091757.1 scf7180000184253 99.28 True fake: scaffold gap size wrong estimation (local) 5889369 6067796 439667 616957 CM091757.1 scf7180000184253 98.75 True fake: scaffold gap size wrong estimation (local) 6067951 6215446 617072 764208 CM091757.1 scf7180000184253 99.17 True fake: scaffold gap size wrong estimation (local) 6215575 6221073 764333 769825 CM091757.1 scf7180000184253 99.49 True fake: scaffold gap size wrong estimation (local) 6221247 6222060 769951 770763 CM091757.1 scf7180000184253 99.75 True fake: scaffold gap size wrong estimation (local) 6222572 6245098 770938 793366 CM091757.1 scf7180000184253 98.57 True fake: scaffold gap size wrong estimation (local) 6245210 6259218 793452 807460 CM091757.1 scf7180000184253 99.69 True fake: scaffold gap size wrong estimation (local) 6259371 6266386 807547 814328 CM091757.1 scf7180000184253 95.76 True fake: scaffold gap size wrong estimation (local) 6266854 6354007 814461 901591 CM091757.1 scf7180000184253 99.66 True local misassembly 6354856 6467187 902389 1014782 CM091757.1 scf7180000184253 99.68 True local misassembly 6467715 6482339 1015327 1029907 CM091757.1 scf7180000184253 98.75 True indel: indel (> 5bp) 6482627 6533460 1030226 1081091 CM091757.1 scf7180000184253 99.31 True translocation 10364890 10368550 1081101 1084750 CM091765.1 scf7180000184253 99.62 True local misassembly 10369178 10370200 1085270 1086292 CM091765.1 scf7180000184253 100.0 True indel: indel (<= 5bp) 10370202 10371155 1086293 1087246 CM091765.1 scf7180000184253 100.0 True fake: scaffold gap size wrong estimation (local) 10371156 10371949 1087424 1088217 CM091765.1 scf7180000184253 99.87 True indel: indel (<= 5bp) 10371951 10374008 1088218 1090275 CM091765.1 scf7180000184253 99.95 True fake: scaffold gap size wrong estimation (local) 10374530 10375773 1090548 1091791 CM091765.1 scf7180000184253 98.39 True fake: scaffold gap size wrong estimation (local) 10375774 10376483 1091802 1092511 CM091765.1 scf7180000184253 98.59 True fake: scaffold gap size wrong estimation (local) 10376877 10377568 1093029 1093720 CM091765.1 scf7180000184253 100.0 True fake: scaffold gap size wrong estimation (local) 10379093 10381649 1094741 1097297 CM091765.1 scf7180000184253 99.84 True indel: indel (<= 5bp) 10381650 10384080 1097299 1099729 CM091765.1 scf7180000184253 100.0 True fake: scaffold gap size wrong estimation (local) 10385162 10386552 1100678 1102091 CM091765.1 scf7180000184253 99.71 True fake: scaffold gap size wrong estimation (local) 10387716 10388503 1103276 1104063 CM091765.1 scf7180000184253 99.87 True fake: scaffold gap size wrong estimation (local) 10389009 10393745 1104168 1108899 CM091765.1 scf7180000184253 99.79 True fake: scaffold gap size wrong estimation (local) 10393867 10397441 1109002 1112576 CM091765.1 scf7180000184253 99.97 True fake: scaffold gap size wrong estimation (local) 10399094 10400275 1113746 1114927 CM091765.1 scf7180000184253 100.0 True fake: scaffold gap size wrong estimation (local) 10401051 10407533 1115286 1121791 CM091765.1 scf7180000184253 99.78 True fake: scaffold gap size wrong estimation (local) 10408046 10408886 1122032 1122872 CM091765.1 scf7180000184253 99.52 True local misassembly 10409305 10411158 1122873 1124726 CM091765.1 scf7180000184253 98.92 True indel: indel (<= 5bp) 10411295 10414595 1124860 1128160 CM091765.1 scf7180000184253 100.0 True indel: indel (<= 5bp) 10414597 10415122 1128161 1128686 CM091765.1 scf7180000184253 99.81 True fake: scaffold gap size wrong estimation (local) 10416843 10418121 1130002 1131280 CM091765.1 scf7180000184253 99.31 True translocation 8474319 8496447 1131281 1153315 CM091763.1 scf7180000184253 98.91 True local misassembly 8497097 8499971 1153416 1156292 CM091763.1 scf7180000184253 99.44 True fake: scaffold gap size wrong estimation (local) 8500222 8508135 1156465 1164356 CM091763.1 scf7180000184253 99.2 True fake: scaffold gap size wrong estimation (local) 8508215 8512024 1164594 1168413 CM091763.1 scf7180000184253 99.37 True fake: scaffold gap size wrong estimation (local) 8512176 8519063 1168508 1175389 CM091763.1 scf7180000184253 99.3 True fake: scaffold gap size wrong estimation (local) 8519247 8544222 1175564 1200592 CM091763.1 scf7180000184253 99.24 True fake: scaffold gap size wrong estimation (local) 8544649 8567584 1200943 1224029 CM091763.1 scf7180000184253 98.8 True indel: indel (> 5bp) 8567629 8619663 1224030 1275993 CM091763.1 scf7180000184253 99.12 True fake: scaffold gap size wrong estimation (local) 8620415 8637924 1276170 1293541 CM091763.1 scf7180000184253 98.46 True fake: scaffold gap size wrong estimation (local) 8638635 8642899 1293687 1297962 CM091763.1 scf7180000184253 99.25 True indel: indel (> 5bp) 8642995 8648238 1298028 1303280 CM091763.1 scf7180000184253 99.14 True local misassembly 8648575 8655304 1303335 1310083 CM091763.1 scf7180000184253 99.23 True fake: scaffold gap size wrong estimation (local) 8655523 8749355 1310253 1403780 CM091763.1 scf7180000184253 99.04 True indel: indel (> 5bp) 8749399 8862255 1403834 1515364 CM091763.1 scf7180000184253 98.36 True local misassembly 8861562 8878520 1515365 1532332 CM091763.1 scf7180000184253 99.41 True fake: scaffold gap size wrong estimation (local) 8878578 8880876 1532387 1534685 CM091763.1 scf7180000184253 99.48 True fake: scaffold gap size wrong estimation (local) 8881172 8905980 1534996 1559522 CM091763.1 scf7180000184253 98.04 True fake: scaffold gap size wrong estimation (local) 8906211 8906904 1559684 1560377 CM091763.1 scf7180000184253 99.14 True indel: indel (<= 5bp) 8906906 8907978 1560378 1561450 CM091763.1 scf7180000184253 99.81 True local misassembly 8908666 8909363 1561659 1562356 CM091763.1 scf7180000184253 99.43 True fake: scaffold gap size wrong estimation (local) 8910425 8911711 1563439 1564725 CM091763.1 scf7180000184253 98.99 True fake: scaffold gap size wrong estimation (local) 8912211 8928582 1565034 1581367 CM091763.1 scf7180000184253 98.75 True local misassembly 8928760 8948953 1581434 1601240 CM091763.1 scf7180000184253 96.77 True indel: indel (> 5bp) 8949030 8954260 1601345 1606588 CM091763.1 scf7180000184253 99.22 True fake: scaffold gap size wrong estimation (local) 8956185 8959700 1607522 1611037 CM091763.1 scf7180000184253 99.03 True fake: scaffold gap size wrong estimation (local) 8960241 8962854 1611256 1613869 CM091763.1 scf7180000184253 98.81 True fake: scaffold gap size wrong estimation (local) 8963423 8964066 1614053 1614696 CM091763.1 scf7180000184253 95.96 True indel: indel (<= 5bp) 8964067 8964942 1614698 1615573 CM091763.1 scf7180000184253 100.0 True indel: indel (<= 5bp) 8964943 8967044 1615575 1617676 CM091763.1 scf7180000184253 99.71 True fake: scaffold gap size wrong estimation (local) 8967577 8969441 1618775 1620639 CM091763.1 scf7180000184253 99.62 True indel: indel (<= 5bp) 8969443 8970582 1620640 1621779 CM091763.1 scf7180000184253 99.82 True indel: indel (<= 5bp) 8970584 8971625 1621780 1622821 CM091763.1 scf7180000184253 99.14 True indel: indel (<= 5bp) 8971836 8972591 1623030 1623785 CM091763.1 scf7180000184253 99.47 True local misassembly 8972858 8974401 1623811 1625354 CM091763.1 scf7180000184253 99.74 True indel: indel (<= 5bp) 8974599 8975447 1625557 1626405 CM091763.1 scf7180000184253 99.88 True indel: indel (> 5bp) 8975448 8976797 1626413 1627762 CM091763.1 scf7180000184253 99.78 True indel: indel (> 5bp) 8977207 8977859 1628180 1628832 CM091763.1 scf7180000184253 99.54 True indel: indel (> 5bp) 8977886 8979710 1628850 1630674 CM091763.1 scf7180000184253 99.56 True indel: indel (<= 5bp) 8979712 8980551 1630675 1631514 CM091763.1 scf7180000184253 98.33 True local misassembly 8981681 8982447 1631722 1632488 CM091763.1 scf7180000184253 99.61 True indel: indel (<= 5bp) 8982448 8983330 1632490 1633372 CM091763.1 scf7180000184253 99.43 True fake: scaffold gap size wrong estimation (local) 8983618 8985830 1633673 1635885 CM091763.1 scf7180000184253 99.37 True indel: indel (<= 5bp) 8985831 8986472 1635887 1636528 CM091763.1 scf7180000184253 99.22 True indel: indel (<= 5bp) 8986473 8987192 1636531 1637250 CM091763.1 scf7180000184253 98.89 True fake: scaffold gap size wrong estimation (local) 8987917 8989106 1637995 1639184 CM091763.1 scf7180000184253 99.92 True indel: indel (<= 5bp) 8989107 8989764 1639186 1639843 CM091763.1 scf7180000184253 99.54 True indel: indel (> 5bp) 8989771 8990418 1639844 1640491 CM091763.1 scf7180000184253 99.54 True indel: indel (> 5bp) 8990442 8991083 1640492 1641133 CM091763.1 scf7180000184253 98.6 True indel: indel (> 5bp) 8991441 8992554 1641477 1642590 CM091763.1 scf7180000184253 99.37 True indel: indel (> 5bp) 8992671 8993456 1642716 1643501 CM091763.1 scf7180000184253 99.62 True translocation 14208887 14209851 1644789 1643824 CM091753.1 scf7180000184253 99.17 True local misassembly 14137708 14208854 1716042 1644988 CM091753.1 scf7180000184253 98.4 True fake: scaffold gap size wrong estimation (local) 14084031 14135734 1768699 1717185 CM091753.1 scf7180000184253 98.94 True fake: scaffold gap size wrong estimation (local) 14051749 14083862 1800679 1768830 CM091753.1 scf7180000184253 98.52 True fake: scaffold gap size wrong estimation (local) 14047582 14051244 1804764 1801121 CM091753.1 scf7180000184253 98.94 True fake: scaffold gap size wrong estimation (local) 14021166 14047382 1830746 1804897 CM091753.1 scf7180000184253 97.43 True fake: scaffold gap size wrong estimation (local) 13955330 14020802 1895492 1830824 CM091753.1 scf7180000184253 98.25 True fake: scaffold gap size wrong estimation (local) 13879250 13955078 1971333 1895607 CM091753.1 scf7180000184253 98.86 True fake: scaffold gap size wrong estimation (local) 13830179 13879024 2019989 1971536 CM091753.1 scf7180000184253 98.6 True fake: scaffold gap size wrong estimation (local) 13814293 13829747 2035585 2020179 CM091753.1 scf7180000184253 99.42 True fake: scaffold gap size wrong estimation (local) 13670997 13812963 2177580 2035923 CM091753.1 scf7180000184253 99.01 True indel: indel (> 5bp) 13522044 13670940 2325618 2177659 CM091753.1 scf7180000184253 98.53 True fake: scaffold gap size wrong estimation (local) 13521533 13523646 2328090 2325980 CM091753.1 scf7180000184253 99.62 True translocation 14436478 14438477 2330081 2328091 CM091754.1 scf7180000184253 98.7 True fake: scaffold gap size wrong estimation (local) 14381577 14436259 2383609 2330175 CM091754.1 scf7180000184253 97.3 True fake: scaffold gap size wrong estimation (local) 14353829 14380820 2411073 2384091 CM091754.1 scf7180000184253 99.48 True indel: indel (> 5bp) 14320559 14353680 2443878 2411261 CM091754.1 scf7180000184253 98.03 True fake: scaffold gap size wrong estimation (local) 14243233 14319274 2520152 2444692 CM091754.1 scf7180000184253 98.46 True fake: scaffold gap size wrong estimation (local) 14210655 14242588 2551988 2520329 CM091754.1 scf7180000184253 98.26 True fake: scaffold gap size wrong estimation (local) 14145451 14210316 2615723 2552144 CM091754.1 scf7180000184253 97.42 True indel: indel (<= 5bp) 14127533 14145294 2633569 2615883 CM091754.1 scf7180000184253 97.78 True fake: scaffold gap size wrong estimation (local) 14119184 14127340 2642245 2633740 CM091754.1 scf7180000184253 95.79 True indel: indel (> 5bp) 14118432 14118941 2643045 2642536 CM091754.1 scf7180000184253 99.8 True indel: indel (<= 5bp) 14117707 14118431 2643772 2643048 CM091754.1 scf7180000184253 99.59 True fake: scaffold gap size wrong estimation (local) 14116621 14117380 2645109 2644350 CM091754.1 scf7180000184253 96.32 True local misassembly 14115591 14116197 2645833 2645227 CM091754.1 scf7180000184253 99.34 True fake: scaffold gap size wrong estimation (local) 14113227 14114542 2648215 2646900 CM091754.1 scf7180000184253 99.92 True indel: indel (<= 5bp) 14112388 14112893 2649056 2648551 CM091754.1 scf7180000184253 99.6 True indel: indel (<= 5bp) 14111327 14112387 2650118 2649058 CM091754.1 scf7180000184253 99.43 True fake: scaffold gap size wrong estimation (local) 14110099 14110767 2651829 2651161 CM091754.1 scf7180000184253 99.7 True indel: indel (<= 5bp) 14108804 14109724 2653123 2652203 CM091754.1 scf7180000184253 99.57 True indel: indel (<= 5bp) 14106987 14108554 2654938 2653371 CM091754.1 scf7180000184253 99.55 True indel: indel (<= 5bp) 14105572 14106985 2656352 2654939 CM091754.1 scf7180000184253 99.86 True local misassembly 14098782 14103935 2662821 2657566 CM091754.1 scf7180000184253 97.77 True fake: scaffold gap size wrong estimation (local) 14038232 14098629 2722963 2662957 CM091754.1 scf7180000184253 96.93 True fake: scaffold gap size wrong estimation (local) 14021466 14037838 2739327 2723237 CM091754.1 scf7180000184253 97.0 True translocation 11216989 11253203 2775507 2739328 CM091757.1 scf7180000184253 99.49 True local misassembly 10773203 11216418 3218910 2776127 CM091757.1 scf7180000184253 99.42 True relocation, inconsistency = 46321 10717568 10719662 3228239 3226130 CM091757.1 scf7180000184253 98.58 True indel: indel (> 5bp) 10447331 10717513 3498425 3228284 CM091757.1 scf7180000184253 99.47 True fake: scaffold gap size wrong estimation (local) 10222873 10447147 3722854 3498587 CM091757.1 scf7180000184253 99.33 True indel: indel (> 5bp) 10012858 10222651 3932782 3723048 CM091757.1 scf7180000184253 99.3 True fake: scaffold gap size wrong estimation (local) 9896840 10012291 4048139 3933020 CM091757.1 scf7180000184253 99.28 True indel: indel (> 5bp) 9749741 9896730 4195198 4048190 CM091757.1 scf7180000184253 99.49 True indel: indel (<= 5bp) 9661544 9749705 4284783 4195235 CM091757.1 scf7180000184253 98.89 True translocation 4448913 4471185 4306566 4284784 CM091753.1 scf7180000184253 97.2 True fake: scaffold gap size wrong estimation (local) 4385732 4448843 4369434 4306650 CM091753.1 scf7180000184253 98.95 True CONTIG scf7180000184253 4369476 misassembled 1652879 1669400 16327 20 CM091752.1 scf7180000184254 98.02 True fake: scaffold gap size wrong estimation (local) 1648451 1651667 20247 17009 CM091752.1 scf7180000184254 99.35 True fake: scaffold gap size wrong estimation (local) 1628924 1648372 39655 20332 CM091752.1 scf7180000184254 98.28 True translocation 2528524 2573224 39656 84481 CM091766.1 scf7180000184254 98.92 True indel: indel (> 5bp) 2573329 2643804 84592 155108 CM091766.1 scf7180000184254 99.89 True fake: scaffold gap size wrong estimation (local) 2644002 2690122 155209 201346 CM091766.1 scf7180000184254 99.56 True fake: scaffold gap size wrong estimation (local) 2690292 2693334 201517 204561 CM091766.1 scf7180000184254 99.84 True fake: scaffold gap size wrong estimation (local) 2693905 2760606 204712 271822 CM091766.1 scf7180000184254 98.62 True indel: indel (> 5bp) 2760681 2891166 271924 402459 CM091766.1 scf7180000184254 99.63 True fake: scaffold gap size wrong estimation (local) 2892066 2897100 402808 407642 CM091766.1 scf7180000184254 95.3 True fake: scaffold gap size wrong estimation (local) 2897298 2923713 407905 433665 CM091766.1 scf7180000184254 96.63 True indel: indel (<= 5bp) 2923779 2927860 433729 437819 CM091766.1 scf7180000184254 99.39 True fake: scaffold gap size wrong estimation (local) 2928065 3051820 438004 561325 CM091766.1 scf7180000184254 98.94 True fake: scaffold gap size wrong estimation (local) 3051966 3214443 561459 723979 CM091766.1 scf7180000184254 99.25 True indel: indel (> 5bp) 3214565 3286534 724131 795976 CM091766.1 scf7180000184254 99.27 True fake: scaffold gap size wrong estimation (local) 3286682 3319489 796121 829283 CM091766.1 scf7180000184254 98.84 True fake: not a misassembly (possible transposable element) 17012818 17014164 829304 830650 CM091751.1 scf7180000184254 100.0 True fake: not a misassembly (possible transposable element) 3319128 3340349 830651 851910 CM091766.1 scf7180000184254 99.53 True indel: indel (> 5bp) 3340391 3382224 851960 894247 CM091766.1 scf7180000184254 98.16 True indel: indel (<= 5bp) 3382322 3385263 894350 897206 CM091766.1 scf7180000184254 95.59 True fake: scaffold gap size wrong estimation (local) 3389513 3390681 901505 902673 CM091766.1 scf7180000184254 98.63 True fake: scaffold gap size wrong estimation (local) 3390819 3391368 903111 903660 CM091766.1 scf7180000184254 99.27 True local misassembly 3395868 3400150 903661 907941 CM091766.1 scf7180000184254 98.9 True indel: indel (<= 5bp) 3400213 3401506 908005 909298 CM091766.1 scf7180000184254 97.84 True local misassembly 3402103 3402869 909762 910536 CM091766.1 scf7180000184254 98.84 True indel: indel (<= 5bp) 3403011 3404469 910676 912145 CM091766.1 scf7180000184254 98.14 True fake: scaffold gap size wrong estimation (local) 3408065 3463797 912202 966239 CM091766.1 scf7180000184254 96.39 True indel: indel (> 5bp) 3463999 3507374 966414 1009803 CM091766.1 scf7180000184254 99.57 True indel: indel (> 5bp) 3507495 3640649 1009967 1142985 CM091766.1 scf7180000184254 99.21 True fake: not a misassembly (possible transposable element) 3401407 3402236 1143029 1143860 CM091766.1 scf7180000184254 99.52 True fake: not a misassembly (possible transposable element) 3640732 3680378 1144073 1183666 CM091766.1 scf7180000184254 99.35 True fake: scaffold gap size wrong estimation (local) 3680930 3687352 1183951 1190244 CM091766.1 scf7180000184254 96.58 True fake: scaffold gap size wrong estimation (local) 3687786 3695178 1190552 1197946 CM091766.1 scf7180000184254 99.53 True fake: not a misassembly (possible transposable element) 1876288 1877500 1199224 1198012 CM091753.1 scf7180000184254 99.51 True fake: not a misassembly (possible transposable element) 3695192 3739509 1199225 1243546 CM091766.1 scf7180000184254 99.4 True indel: indel (> 5bp) 3739624 3766685 1243624 1270672 CM091766.1 scf7180000184254 99.43 True fake: scaffold gap size wrong estimation (local) 3767189 3767799 1271217 1271827 CM091766.1 scf7180000184254 99.67 True indel: indel (<= 5bp) 3767800 3772590 1271829 1276619 CM091766.1 scf7180000184254 99.73 True fake: scaffold gap size wrong estimation (local) 3777939 3778586 1277034 1277681 CM091766.1 scf7180000184254 99.69 True indel: indel (> 5bp) 3778641 3784938 1277682 1283979 CM091766.1 scf7180000184254 99.51 True indel: indel (<= 5bp) 3784941 3785753 1283980 1284792 CM091766.1 scf7180000184254 100.0 True indel: indel (<= 5bp) 3785754 3786375 1284794 1285415 CM091766.1 scf7180000184254 99.36 True indel: indel (<= 5bp) 3786376 3788776 1285417 1287817 CM091766.1 scf7180000184254 99.88 True indel: indel (> 5bp) 3788788 3790276 1287818 1289306 CM091766.1 scf7180000184254 99.4 True indel: indel (<= 5bp) 3790277 3795687 1289308 1294718 CM091766.1 scf7180000184254 99.57 True indel: indel (> 5bp) 3795694 3797311 1294719 1296336 CM091766.1 scf7180000184254 99.57 True indel: indel (<= 5bp) 3797316 3798850 1296337 1297871 CM091766.1 scf7180000184254 99.54 True indel: indel (<= 5bp) 3798855 3800899 1297872 1299916 CM091766.1 scf7180000184254 99.85 True indel: indel (<= 5bp) 3800929 3802512 1299949 1301532 CM091766.1 scf7180000184254 99.87 True indel: indel (<= 5bp) 3802514 3804757 1301533 1303776 CM091766.1 scf7180000184254 99.2 True fake: scaffold gap size wrong estimation (local) 3804858 3806388 1303918 1305448 CM091766.1 scf7180000184254 99.22 True indel: indel (<= 5bp) 3806393 3808051 1305449 1307107 CM091766.1 scf7180000184254 99.4 True indel: indel (<= 5bp) 3808053 3814662 1307108 1313717 CM091766.1 scf7180000184254 99.5 True indel: indel (<= 5bp) 3814664 3818358 1313718 1317412 CM091766.1 scf7180000184254 99.76 True indel: indel (> 5bp) 3818359 3818952 1317423 1318016 CM091766.1 scf7180000184254 99.49 True indel: indel (<= 5bp) 3818953 3821210 1318018 1320275 CM091766.1 scf7180000184254 99.87 True indel: indel (<= 5bp) 3821227 3823079 1320294 1322146 CM091766.1 scf7180000184254 99.89 True fake: scaffold gap size wrong estimation (local) 3823080 3824751 1322175 1323846 CM091766.1 scf7180000184254 99.4 True indel: indel (<= 5bp) 3824753 3826032 1323847 1325126 CM091766.1 scf7180000184254 99.14 True indel: indel (<= 5bp) 3826033 3826927 1325128 1326022 CM091766.1 scf7180000184254 99.66 True fake: scaffold gap size wrong estimation (local) 3827318 3829785 1326487 1328954 CM091766.1 scf7180000184254 99.64 True indel: indel (> 5bp) 3830107 3830860 1329224 1329977 CM091766.1 scf7180000184254 97.08 True local misassembly 3831357 3832592 1330484 1331719 CM091766.1 scf7180000184254 99.35 True indel: indel (<= 5bp) 3832593 3833379 1331721 1332507 CM091766.1 scf7180000184254 99.49 True indel: indel (<= 5bp) 3833525 3834644 1332655 1333774 CM091766.1 scf7180000184254 99.82 True translocation, scaffold gap is present 8323233 8385401 1333899 1396096 CM091753.1 scf7180000184254 97.25 True fake: scaffold gap size wrong estimation (local) 8385631 8557435 1396189 1567978 CM091753.1 scf7180000184254 99.4 True fake: scaffold gap size wrong estimation (local) 8557539 8857913 1568089 1858313 CM091753.1 scf7180000184254 96.09 True fake: scaffold gap size wrong estimation (local) 8858207 8971161 1858400 1971232 CM091753.1 scf7180000184254 99.43 True fake: scaffold gap size wrong estimation (local) 8972592 9129633 1972163 2129191 CM091753.1 scf7180000184254 99.46 True fake: scaffold gap size wrong estimation (local) 9130394 9158024 2129437 2157055 CM091753.1 scf7180000184254 99.5 True fake: scaffold gap size wrong estimation (local) 9158103 9168728 2157133 2167905 CM091753.1 scf7180000184254 98.17 True fake: scaffold gap size wrong estimation (local) 9168982 9410960 2168044 2409769 CM091753.1 scf7180000184254 99.31 True fake: scaffold gap size wrong estimation (local) 9411167 9447678 2409902 2446426 CM091753.1 scf7180000184254 99.56 True CONTIG scf7180000184254 2446426 misassembled 9181306 9182080 1 775 CM091767.1 scf7180000184255 99.35 True fake: scaffold gap size wrong estimation (local) 9183423 9184389 2040 3033 CM091767.1 scf7180000184255 99.34 True translocation, scaffold gap is present 13541840 13555516 3364 17031 CM091754.1 scf7180000184255 99.21 True local misassembly 13557159 13663264 21505 127868 CM091754.1 scf7180000184255 99.07 True fake: scaffold gap size wrong estimation (local) 13664247 13735120 128383 199309 CM091754.1 scf7180000184255 99.24 True fake: scaffold gap size wrong estimation (local) 13735439 13737186 199426 201172 CM091754.1 scf7180000184255 99.37 True fake: scaffold gap size wrong estimation (local) 13737809 13740495 201762 204446 CM091754.1 scf7180000184255 99.81 True fake: scaffold gap size wrong estimation (local) 13740730 13742599 204630 206499 CM091754.1 scf7180000184255 99.79 True fake: scaffold gap size wrong estimation (local) 13743139 13793441 206750 256929 CM091754.1 scf7180000184255 99.29 True indel: indel (> 5bp) 13793500 13821069 257008 284582 CM091754.1 scf7180000184255 98.42 True fake: not a misassembly (possible transposable element) 13810370 13811833 284603 286069 CM091754.1 scf7180000184255 98.92 True fake: not a misassembly (possible transposable element) 13820908 13826771 286070 291947 CM091754.1 scf7180000184255 99.25 True indel: indel (> 5bp) 13826801 13828588 292014 293790 CM091754.1 scf7180000184255 97.83 True local misassembly 13829120 13829822 294331 295033 CM091754.1 scf7180000184255 100.0 True relocation, scaffold gap is present, inconsistency = 20208 13850116 13853419 295119 298431 CM091754.1 scf7180000184255 99.22 True fake: scaffold gap size wrong estimation (local) 13853631 13855293 298545 300202 CM091754.1 scf7180000184255 98.68 True fake: scaffold gap size wrong estimation (local) 13855376 13867322 300287 312088 CM091754.1 scf7180000184255 97.85 True fake: scaffold gap size wrong estimation (local) 13869248 13870440 313706 314898 CM091754.1 scf7180000184255 97.32 True indel: indel (> 5bp) 13870467 13871070 314899 315502 CM091754.1 scf7180000184255 99.01 True local misassembly 13871385 13872258 315503 316376 CM091754.1 scf7180000184255 99.66 True local misassembly 13872776 13873520 316897 317641 CM091754.1 scf7180000184255 99.73 True indel: indel (<= 5bp) 13873656 13874387 317774 318505 CM091754.1 scf7180000184255 98.77 True fake: scaffold gap size wrong estimation (local) 13874484 13918970 318712 362304 CM091754.1 scf7180000184255 96.64 True indel: indel (> 5bp) 13919039 13925366 362382 368736 CM091754.1 scf7180000184255 99.38 True indel: indel (> 5bp) 13925472 13950566 368802 393891 CM091754.1 scf7180000184255 99.18 True fake: scaffold gap size wrong estimation (local) 13950891 13960765 394414 404553 CM091754.1 scf7180000184255 96.73 True fake: scaffold gap size wrong estimation (local) 13960930 13976949 404609 420655 CM091754.1 scf7180000184255 98.29 True fake: scaffold gap size wrong estimation (local) 13977178 13989032 420864 432715 CM091754.1 scf7180000184255 99.35 True indel: indel (> 5bp) 13989368 13990324 433104 434060 CM091754.1 scf7180000184255 99.69 True indel: indel (> 5bp) 13990325 13990892 434130 434697 CM091754.1 scf7180000184255 99.47 True indel: indel (> 5bp) 13991048 13992563 434847 436362 CM091754.1 scf7180000184255 99.67 True indel: indel (<= 5bp) 13992564 13993824 436365 437625 CM091754.1 scf7180000184255 99.68 True indel: indel (<= 5bp) 13993825 13995115 437627 438917 CM091754.1 scf7180000184255 99.92 True indel: indel (<= 5bp) 13995116 13996153 438919 439956 CM091754.1 scf7180000184255 99.52 True indel: stretch of mismatches 13996642 13998256 440445 442059 CM091754.1 scf7180000184255 99.81 True fake: scaffold gap size wrong estimation (local) 13999161 13999890 442938 443667 CM091754.1 scf7180000184255 99.18 True indel: indel (> 5bp) 13999904 14001121 443668 444885 CM091754.1 scf7180000184255 99.01 True indel: indel (<= 5bp) 14001525 14002509 445284 446268 CM091754.1 scf7180000184255 99.49 True indel: indel (<= 5bp) 14002510 14003349 446270 447109 CM091754.1 scf7180000184255 99.88 True indel: indel (> 5bp) 14003519 14004083 447286 447850 CM091754.1 scf7180000184255 99.82 True indel: indel (<= 5bp) 14004163 14004692 447935 448464 CM091754.1 scf7180000184255 99.43 True indel: indel (<= 5bp) 14004693 14005590 448466 449363 CM091754.1 scf7180000184255 100.0 True indel: indel (<= 5bp) 14005703 14006346 449478 450121 CM091754.1 scf7180000184255 99.53 True indel: indel (<= 5bp) 14006347 14006911 450123 450687 CM091754.1 scf7180000184255 99.65 True indel: indel (<= 5bp) 14007166 14008116 450945 451895 CM091754.1 scf7180000184255 99.26 True indel: indel (<= 5bp) 14008117 14008932 451897 452712 CM091754.1 scf7180000184255 99.26 True local misassembly 14009491 14010365 453271 454145 CM091754.1 scf7180000184255 99.89 True indel: indel (<= 5bp) 14010429 14011354 454206 455131 CM091754.1 scf7180000184255 99.78 True indel: indel (> 5bp) 14011617 14013312 455401 457096 CM091754.1 scf7180000184255 99.23 True fake: scaffold gap size wrong estimation (local) 14013313 14014840 458409 459936 CM091754.1 scf7180000184255 99.61 True indel: indel (<= 5bp) 14015156 14015828 460253 460925 CM091754.1 scf7180000184255 99.55 True indel: indel (<= 5bp) 14015830 14018677 460926 463773 CM091754.1 scf7180000184255 99.75 True fake: scaffold gap size wrong estimation (local) 14018757 14019409 463864 464516 CM091754.1 scf7180000184255 98.93 True indel: indel (> 5bp) 14019480 14020527 464614 465661 CM091754.1 scf7180000184255 99.43 True fake: scaffold gap size wrong estimation (local) 14020865 14021404 465975 466514 CM091754.1 scf7180000184255 99.65 True translocation 11253142 11325413 466515 538812 CM091757.1 scf7180000184255 99.57 True indel: indel (<= 5bp) 11325459 11521137 538856 734506 CM091757.1 scf7180000184255 99.45 True indel: indel (<= 5bp) 11521440 11593432 734813 806834 CM091757.1 scf7180000184255 99.38 True fake: scaffold gap size wrong estimation (local) 11593574 11655607 806930 869032 CM091757.1 scf7180000184255 99.45 True fake: scaffold gap size wrong estimation (local) 11655696 11708267 869205 921650 CM091757.1 scf7180000184255 99.14 True fake: scaffold gap size wrong estimation (local) 11708361 11715285 921708 928687 CM091757.1 scf7180000184255 98.97 True indel: indel (> 5bp) 11715313 11833036 928723 1046481 CM091757.1 scf7180000184255 99.26 True fake: scaffold gap size wrong estimation (local) 11833176 11870403 1046632 1083865 CM091757.1 scf7180000184255 99.48 True indel: indel (> 5bp) 11870537 11889693 1083945 1103086 CM091757.1 scf7180000184255 99.55 True local misassembly 11890132 11915270 1103645 1128775 CM091757.1 scf7180000184255 99.22 True fake: scaffold gap size wrong estimation (local) 11915226 11947163 1129414 1161439 CM091757.1 scf7180000184255 99.21 True fake: scaffold gap size wrong estimation (local) 11947761 11979046 1162334 1192914 CM091757.1 scf7180000184255 96.13 True fake: scaffold gap size wrong estimation (local) 11979935 11981225 1193654 1194939 CM091757.1 scf7180000184255 98.37 True fake: scaffold gap size wrong estimation (local) 11981411 11993014 1195104 1206716 CM091757.1 scf7180000184255 98.67 True indel: indel (<= 5bp) 11993131 11993998 1206834 1207701 CM091757.1 scf7180000184255 99.42 True indel: indel (> 5bp) 11994266 11994977 1207953 1208664 CM091757.1 scf7180000184255 99.58 True indel: indel (<= 5bp) 11994978 11995713 1208666 1209401 CM091757.1 scf7180000184255 99.18 True indel: indel (<= 5bp) 11995715 12002125 1209402 1215812 CM091757.1 scf7180000184255 99.66 True local misassembly 12003624 12004150 1215813 1216339 CM091757.1 scf7180000184255 97.53 True indel: indel (<= 5bp) 12004151 12006304 1216344 1218497 CM091757.1 scf7180000184255 99.58 True indel: indel (> 5bp) 12006461 12007452 1218633 1219624 CM091757.1 scf7180000184255 99.09 True indel: indel (> 5bp) 12007453 12009318 1219631 1221496 CM091757.1 scf7180000184255 99.57 True indel: indel (<= 5bp) 12009319 12010570 1221498 1222749 CM091757.1 scf7180000184255 99.36 True indel: indel (<= 5bp) 12010571 12011093 1222751 1223273 CM091757.1 scf7180000184255 100.0 True indel: indel (<= 5bp) 12011094 12011877 1223277 1224060 CM091757.1 scf7180000184255 99.49 True fake: scaffold gap size wrong estimation (local) 12013137 12017179 1224767 1228811 CM091757.1 scf7180000184255 98.76 True fake: scaffold gap size wrong estimation (local) 12016902 12031476 1229147 1243766 CM091757.1 scf7180000184255 99.1 True fake: scaffold gap size wrong estimation (local) 12032144 12033731 1244106 1245704 CM091757.1 scf7180000184255 98.54 True indel: indel (<= 5bp) 12033956 12041506 1245933 1253444 CM091757.1 scf7180000184255 98.36 True fake: scaffold gap size wrong estimation (local) 12041819 12043559 1253685 1255469 CM091757.1 scf7180000184255 97.61 True translocation 3893110 3894724 1257085 1255470 CM091755.1 scf7180000184255 98.89 True fake: scaffold gap size wrong estimation (local) 3862077 3892937 1287533 1257200 CM091755.1 scf7180000184255 97.63 True fake: scaffold gap size wrong estimation (local) 3821575 3861859 1327932 1287732 CM091755.1 scf7180000184255 97.82 True fake: scaffold gap size wrong estimation (local) 3813751 3821259 1335553 1328046 CM091755.1 scf7180000184255 99.73 True fake: scaffold gap size wrong estimation (local) 3807415 3813585 1341730 1335675 CM091755.1 scf7180000184255 97.62 True fake: scaffold gap size wrong estimation (local) 3755874 3803233 1390937 1343658 CM091755.1 scf7180000184255 98.82 True fake: scaffold gap size wrong estimation (local) 3669160 3755625 1477909 1392090 CM091755.1 scf7180000184255 98.51 True indel: indel (> 5bp) 3659118 3669056 1487630 1477982 CM091755.1 scf7180000184255 96.4 True fake: scaffold gap size wrong estimation (local) 3649528 3658149 1496905 1488269 CM091755.1 scf7180000184255 99.43 True fake: scaffold gap size wrong estimation (local) 3614319 3649359 1531877 1497022 CM091755.1 scf7180000184255 98.76 True fake: scaffold gap size wrong estimation (local) 3606997 3613932 1539008 1532076 CM091755.1 scf7180000184255 99.63 True fake: scaffold gap size wrong estimation (local) 3303224 3605306 1841660 1540347 CM091755.1 scf7180000184255 98.98 True indel: indel (> 5bp) 3194646 3303174 1950177 1841730 CM091755.1 scf7180000184255 98.67 True fake: scaffold gap size wrong estimation (local) 3069249 3194284 2074917 1950329 CM091755.1 scf7180000184255 99.11 True fake: scaffold gap size wrong estimation (local) 2990513 3068436 2153640 2075403 CM091755.1 scf7180000184255 99.26 True fake: scaffold gap size wrong estimation (local) 2976723 2990311 2167505 2153909 CM091755.1 scf7180000184255 99.61 True fake: scaffold gap size wrong estimation (local) 2969962 2976533 2174227 2167652 CM091755.1 scf7180000184255 99.41 True fake: scaffold gap size wrong estimation (local) 2932038 2969775 2212150 2174365 CM091755.1 scf7180000184255 99.48 True fake: scaffold gap size wrong estimation (local) 2799034 2931944 2344055 2212232 CM091755.1 scf7180000184255 98.79 True CONTIG scf7180000184255 2345600 misassembled 12312966 12320637 48 7397 CM091761.1 scf7180000184256 95.48 True fake: scaffold gap size wrong estimation (local) 12320955 12321641 7780 8466 CM091761.1 scf7180000184256 99.71 True relocation, scaffold gap is present, inconsistency = 767983 11486967 11552902 73489 8536 CM091761.1 scf7180000184256 98.14 True fake: scaffold gap size wrong estimation (local) 11435485 11486689 124986 73591 CM091761.1 scf7180000184256 99.26 True fake: scaffold gap size wrong estimation (local) 11378481 11435025 181750 125362 CM091761.1 scf7180000184256 97.51 True local misassembly 11379181 11379704 182311 181780 CM091761.1 scf7180000184256 98.31 True fake: scaffold gap size wrong estimation (local) 11374113 11378495 187627 183224 CM091761.1 scf7180000184256 99.52 True fake: scaffold gap size wrong estimation (local) 11369298 11373231 192460 188529 CM091761.1 scf7180000184256 99.21 True fake: scaffold gap size wrong estimation (local) 11322530 11369185 239253 193273 CM091761.1 scf7180000184256 97.66 True fake: scaffold gap size wrong estimation (local) 11087675 11322172 474180 239834 CM091761.1 scf7180000184256 98.87 True fake: scaffold gap size wrong estimation (local) 11086779 11087471 475043 474351 CM091761.1 scf7180000184256 99.57 True fake: scaffold gap size wrong estimation (local) 11078670 11086591 483068 475178 CM091761.1 scf7180000184256 98.9 True fake: scaffold gap size wrong estimation (local) 11003910 11078464 557420 483254 CM091761.1 scf7180000184256 99.21 True fake: scaffold gap size wrong estimation (local) 10980035 11003625 581514 557954 CM091761.1 scf7180000184256 99.52 True fake: scaffold gap size wrong estimation (local) 10964747 10978628 595867 581928 CM091761.1 scf7180000184256 99.12 True fake: scaffold gap size wrong estimation (local) 10955121 10964410 605308 596166 CM091761.1 scf7180000184256 97.28 True fake: scaffold gap size wrong estimation (local) 10816045 10955281 744357 605691 CM091761.1 scf7180000184256 98.7 True fake: scaffold gap size wrong estimation (local) 10813679 10815130 746713 745262 CM091761.1 scf7180000184256 99.59 True local misassembly 10811770 10813031 748626 747365 CM091761.1 scf7180000184256 99.6 True indel: indel (<= 5bp) 10810479 10811769 749918 748628 CM091761.1 scf7180000184256 99.69 True indel: indel (<= 5bp) 10806467 10810478 753931 749920 CM091761.1 scf7180000184256 99.45 True local misassembly 10804513 10805534 755915 754894 CM091761.1 scf7180000184256 99.61 True indel: indel (<= 5bp) 10803880 10804512 756549 755917 CM091761.1 scf7180000184256 99.21 True local misassembly 10799987 10802929 760441 757499 CM091761.1 scf7180000184256 99.63 True indel: indel (<= 5bp) 10798767 10799986 761662 760443 CM091761.1 scf7180000184256 99.67 True local misassembly 10795616 10797636 763854 761834 CM091761.1 scf7180000184256 99.95 True indel: indel (> 5bp) 10794263 10795579 765181 763865 CM091761.1 scf7180000184256 99.54 True indel: indel (<= 5bp) 10793640 10794262 765805 765183 CM091761.1 scf7180000184256 99.68 True indel: indel (<= 5bp) 10792979 10793638 766465 765806 CM091761.1 scf7180000184256 99.85 True indel: indel (> 5bp) 10791626 10792733 767835 766728 CM091761.1 scf7180000184256 99.82 True indel: indel (<= 5bp) 10790418 10791625 769044 767837 CM091761.1 scf7180000184256 99.92 True indel: indel (<= 5bp) 10789137 10790281 770324 769180 CM091761.1 scf7180000184256 99.39 True indel: indel (<= 5bp) 10786525 10788734 772937 770728 CM091761.1 scf7180000184256 99.46 True indel: indel (<= 5bp) 10785905 10786496 773560 772969 CM091761.1 scf7180000184256 99.83 True indel: indel (> 5bp) 10781879 10785401 777572 774050 CM091761.1 scf7180000184256 99.55 True indel: indel (<= 5bp) 10781248 10781852 778205 777601 CM091761.1 scf7180000184256 100.0 True indel: indel (<= 5bp) 10780712 10781247 778742 778207 CM091761.1 scf7180000184256 99.25 True indel: indel (<= 5bp) 10778891 10780711 780564 778744 CM091761.1 scf7180000184256 99.89 True indel: indel (<= 5bp) 10778056 10778889 781398 780565 CM091761.1 scf7180000184256 99.52 True indel: indel (> 5bp) 10775739 10777548 783708 781899 CM091761.1 scf7180000184256 99.94 True local misassembly 10771106 10772012 784615 783709 CM091761.1 scf7180000184256 99.45 True indel: indel (<= 5bp) 10767961 10771105 787761 784617 CM091761.1 scf7180000184256 99.75 True fake: scaffold gap size wrong estimation (local) 10765268 10767332 790471 788407 CM091761.1 scf7180000184256 99.66 True indel: indel (<= 5bp) 10764377 10765267 791363 790473 CM091761.1 scf7180000184256 97.31 True local misassembly 10762632 10764022 792913 791523 CM091761.1 scf7180000184256 99.93 True indel: indel (<= 5bp) 10761706 10762631 793840 792915 CM091761.1 scf7180000184256 98.6 True indel: indel (> 5bp) 10760825 10761530 794751 794046 CM091761.1 scf7180000184256 99.29 True indel: stretch of mismatches 10596373 10760733 958992 794843 CM091761.1 scf7180000184256 99.24 True fake: scaffold gap size wrong estimation (local) 10562531 10595739 992756 959539 CM091761.1 scf7180000184256 99.26 True fake: scaffold gap size wrong estimation (local) 10541123 10562307 1014073 992894 CM091761.1 scf7180000184256 99.32 True fake: scaffold gap size wrong estimation (local) 10540036 10540870 1015355 1014518 CM091761.1 scf7180000184256 99.28 True indel: indel (> 5bp) 10508199 10539916 1047259 1015425 CM091761.1 scf7180000184256 99.19 True fake: scaffold gap size wrong estimation (local) 10480627 10507452 1074928 1048064 CM091761.1 scf7180000184256 99.36 True indel: stretch of mismatches 10444907 10480552 1110739 1075003 CM091761.1 scf7180000184256 99.44 True local misassembly 10420131 10444537 1135653 1111224 CM091761.1 scf7180000184256 99.33 True fake: scaffold gap size wrong estimation (local) 10295537 10419987 1260934 1136224 CM091761.1 scf7180000184256 99.09 True fake: scaffold gap size wrong estimation (local) 10231570 10295402 1324865 1261035 CM091761.1 scf7180000184256 99.13 True fake: scaffold gap size wrong estimation (local) 10163265 10231336 1393029 1325075 CM091761.1 scf7180000184256 99.03 True fake: scaffold gap size wrong estimation (local) 10018120 10163104 1538252 1393164 CM091761.1 scf7180000184256 99.36 True indel: indel (> 5bp) 9978631 10018094 1577768 1538300 CM091761.1 scf7180000184256 99.51 True fake: scaffold gap size wrong estimation (local) 9690201 9978458 1866195 1577881 CM091761.1 scf7180000184256 99.46 True fake: scaffold gap size wrong estimation (local) 9560319 9689987 1996219 1866428 CM091761.1 scf7180000184256 99.38 True indel: indel (> 5bp) 9253388 9560294 2302973 1996272 CM091761.1 scf7180000184256 99.21 True indel: indel (> 5bp) 9228784 9253320 2327624 2303048 CM091761.1 scf7180000184256 99.41 True indel: indel (> 5bp) 9208976 9228750 2347461 2327666 CM091761.1 scf7180000184256 99.56 True CONTIG scf7180000184256 2347510 misassembled 10809196 10831184 21964 1 CM091758.1 scf7180000184257 99.15 True fake: scaffold gap size wrong estimation (local) 10748884 10808959 82177 22162 CM091758.1 scf7180000184257 99.2 True fake: scaffold gap size wrong estimation (local) 10729283 10748689 101664 82292 CM091758.1 scf7180000184257 99.29 True fake: scaffold gap size wrong estimation (local) 10578517 10729159 251816 101751 CM091758.1 scf7180000184257 98.94 True indel: indel (> 5bp) 10519752 10578464 310735 251912 CM091758.1 scf7180000184257 99.25 True fake: scaffold gap size wrong estimation (local) 10470160 10519600 360338 310857 CM091758.1 scf7180000184257 99.38 True indel: indel (> 5bp) 10421707 10469941 408794 360527 CM091758.1 scf7180000184257 98.79 True fake: scaffold gap size wrong estimation (local) 10408087 10421666 422746 408875 CM091758.1 scf7180000184257 97.29 True fake: scaffold gap size wrong estimation (local) 10394558 10406512 435025 423048 CM091758.1 scf7180000184257 98.81 True fake: scaffold gap size wrong estimation (local) 10386067 10394471 443496 435094 CM091758.1 scf7180000184257 99.43 True fake: scaffold gap size wrong estimation (local) 10372479 10385615 456650 443599 CM091758.1 scf7180000184257 98.4 True local misassembly 10368308 10371330 460091 457047 CM091758.1 scf7180000184257 99.31 True fake: scaffold gap size wrong estimation (local) 10339049 10368179 488296 460188 CM091758.1 scf7180000184257 95.62 True fake: scaffold gap size wrong estimation (local) 10337833 10338451 489454 488836 CM091758.1 scf7180000184257 99.84 True local misassembly 10334847 10337088 492162 489921 CM091758.1 scf7180000184257 99.29 True fake: scaffold gap size wrong estimation (local) 10333272 10334450 493698 492520 CM091758.1 scf7180000184257 97.96 True fake: scaffold gap size wrong estimation (local) 10152553 10331636 672591 494429 CM091758.1 scf7180000184257 99.03 True fake: scaffold gap size wrong estimation (local) 10084519 10152266 740323 672649 CM091758.1 scf7180000184257 99.38 True fake: scaffold gap size wrong estimation (local) 10083056 10083883 741315 740488 CM091758.1 scf7180000184257 99.52 True fake: scaffold gap size wrong estimation (local) 9884056 10082137 939385 741674 CM091758.1 scf7180000184257 99.21 True fake: scaffold gap size wrong estimation (local) 9876472 9883321 946704 939894 CM091758.1 scf7180000184257 98.31 True fake: scaffold gap size wrong estimation (local) 9866962 9875632 955843 947180 CM091758.1 scf7180000184257 99.04 True indel: indel (> 5bp) 9847143 9866867 975434 955948 CM091758.1 scf7180000184257 97.86 True fake: scaffold gap size wrong estimation (local) 9829171 9847120 995205 977373 CM091758.1 scf7180000184257 98.82 True fake: scaffold gap size wrong estimation (local) 9827848 9828792 996384 995437 CM091758.1 scf7180000184257 98.73 True fake: scaffold gap size wrong estimation (local) 9826295 9827088 997694 996901 CM091758.1 scf7180000184257 99.24 True fake: scaffold gap size wrong estimation (local) 9824978 9825540 998821 998259 CM091758.1 scf7180000184257 98.58 True fake: scaffold gap size wrong estimation (local) 9806120 9824828 1017717 999014 CM091758.1 scf7180000184257 99.28 True fake: scaffold gap size wrong estimation (local) 9803945 9805914 1020287 1018318 CM091758.1 scf7180000184257 99.59 True fake: scaffold gap size wrong estimation (local) 9769721 9804241 1055090 1020560 CM091758.1 scf7180000184257 99.11 True fake: scaffold gap size wrong estimation (local) 9756528 9769227 1068269 1055558 CM091758.1 scf7180000184257 99.38 True fake: scaffold gap size wrong estimation (local) 9717984 9756313 1106486 1068467 CM091758.1 scf7180000184257 98.38 True fake: scaffold gap size wrong estimation (local) 9713344 9717863 1111343 1106843 CM091758.1 scf7180000184257 98.48 True fake: scaffold gap size wrong estimation (local) 9712445 9712960 1112531 1112016 CM091758.1 scf7180000184257 99.61 True indel: indel (<= 5bp) 9711864 9712444 1113113 1112533 CM091758.1 scf7180000184257 99.48 True fake: scaffold gap size wrong estimation (local) 9708661 9709777 1115490 1114374 CM091758.1 scf7180000184257 99.28 True fake: scaffold gap size wrong estimation (local) 9692145 9708101 1132333 1116348 CM091758.1 scf7180000184257 99.31 True relocation, inconsistency = 56466 9621532 9635678 1146418 1132334 CM091758.1 scf7180000184257 98.54 True fake: scaffold gap size wrong estimation (local) 9604451 9621407 1163555 1146592 CM091758.1 scf7180000184257 99.39 True fake: scaffold gap size wrong estimation (local) 9594063 9604339 1173888 1163663 CM091758.1 scf7180000184257 99.02 True indel: indel (> 5bp) 9593391 9593985 1174579 1173985 CM091758.1 scf7180000184257 99.16 True fake: scaffold gap size wrong estimation (local) 9576921 9593169 1190954 1174727 CM091758.1 scf7180000184257 99.59 True fake: scaffold gap size wrong estimation (local) 9536764 9576667 1231700 1191163 CM091758.1 scf7180000184257 97.96 True indel: indel (> 5bp) 9482510 9536699 1285803 1231741 CM091758.1 scf7180000184257 98.94 True indel: indel (> 5bp) 9412534 9482448 1355418 1285871 CM091758.1 scf7180000184257 98.79 True fake: scaffold gap size wrong estimation (local) 9378033 9412395 1389885 1355533 CM091758.1 scf7180000184257 99.56 True indel: indel (> 5bp) 9346952 9377998 1421230 1389910 CM091758.1 scf7180000184257 98.91 True indel: indel (<= 5bp) 9305928 9346858 1462473 1421327 CM091758.1 scf7180000184257 98.98 True fake: scaffold gap size wrong estimation (local) 9210009 9305761 1558300 1462604 CM091758.1 scf7180000184257 98.88 True indel: stretch of mismatches 9161194 9210008 1607084 1558301 CM091758.1 scf7180000184257 99.38 True indel: indel (> 5bp) 9151217 9161150 1617049 1607117 CM091758.1 scf7180000184257 99.79 True indel: indel (> 5bp) 9137375 9151193 1630922 1617102 CM091758.1 scf7180000184257 99.55 True local misassembly 9115894 9137028 1652431 1631555 CM091758.1 scf7180000184257 97.71 True fake: not a misassembly (possible transposable element) 5141506 5143166 1654119 1652459 CM091754.1 scf7180000184257 100.0 True fake: not a misassembly (possible transposable element) 9101466 9116337 1669018 1654137 CM091758.1 scf7180000184257 99.65 True fake: scaffold gap size wrong estimation (local) 9038159 9101352 1732115 1669123 CM091758.1 scf7180000184257 99.21 True fake: scaffold gap size wrong estimation (local) 8868673 9038033 1901563 1732237 CM091758.1 scf7180000184257 99.23 True indel: indel (> 5bp) 8616518 8868540 2153669 1901688 CM091758.1 scf7180000184257 99.3 True CONTIG scf7180000184257 2153697 misassembled 3214177 3214872 1 696 CM091752.1 scf7180000184258 99.86 True fake: scaffold gap size wrong estimation (local) 3216202 3217373 2349 3519 CM091752.1 scf7180000184258 99.49 True translocation, scaffold gap is present 19420199 19422764 6387 3793 CM091751.1 scf7180000184258 98.24 True fake: scaffold gap size wrong estimation (local) 19410696 19419992 15641 6514 CM091751.1 scf7180000184258 96.14 True fake: scaffold gap size wrong estimation (local) 19408814 19409463 17126 16477 CM091751.1 scf7180000184258 99.23 True indel: indel (> 5bp) 19407579 19408354 18340 17565 CM091751.1 scf7180000184258 98.71 True fake: scaffold gap size wrong estimation (local) 19397271 19405910 28491 19622 CM091751.1 scf7180000184258 97.97 True fake: scaffold gap size wrong estimation (local) 19394740 19396971 30966 28698 CM091751.1 scf7180000184258 97.12 True fake: scaffold gap size wrong estimation (local) 19393570 19394241 31800 31112 CM091751.1 scf7180000184258 96.23 True fake: scaffold gap size wrong estimation (local) 19391060 19393245 34512 32319 CM091751.1 scf7180000184258 99.18 True fake: scaffold gap size wrong estimation (local) 19386528 19389988 38788 35325 CM091751.1 scf7180000184258 99.28 True fake: scaffold gap size wrong estimation (local) 19380093 19383794 43913 40292 CM091751.1 scf7180000184258 95.33 True fake: scaffold gap size wrong estimation (local) 19377143 19379826 46812 44128 CM091751.1 scf7180000184258 99.22 True indel: indel (> 5bp) 19354347 19377094 69403 46896 CM091751.1 scf7180000184258 97.46 True fake: scaffold gap size wrong estimation (local) 19353547 19354250 70198 69487 CM091751.1 scf7180000184258 97.33 True fake: scaffold gap size wrong estimation (local) 19350959 19353377 72797 70349 CM091751.1 scf7180000184258 97.8 True local misassembly 19349364 19350840 74962 73498 CM091751.1 scf7180000184258 97.63 True fake: scaffold gap size wrong estimation (local) 19347177 19348729 76898 75340 CM091751.1 scf7180000184258 98.97 True fake: scaffold gap size wrong estimation (local) 19346080 19346895 78312 77479 CM091751.1 scf7180000184258 97.24 True fake: scaffold gap size wrong estimation (local) 19344912 19345464 80412 79860 CM091751.1 scf7180000184258 99.1 True fake: scaffold gap size wrong estimation (local) 19342378 19343725 83621 82274 CM091751.1 scf7180000184258 98.96 True fake: scaffold gap size wrong estimation (local) 19341741 19342277 87441 86905 CM091751.1 scf7180000184258 99.63 True indel: indel (<= 5bp) 19341211 19341740 87972 87443 CM091751.1 scf7180000184258 95.09 True fake: scaffold gap size wrong estimation (local) 19337364 19340530 91826 88660 CM091751.1 scf7180000184258 99.62 True fake: scaffold gap size wrong estimation (local) 19332366 19335166 96218 93418 CM091751.1 scf7180000184258 99.5 True local misassembly 19330795 19331572 97789 97012 CM091751.1 scf7180000184258 99.1 True fake: scaffold gap size wrong estimation (local) 19329249 19329922 99108 98435 CM091751.1 scf7180000184258 98.81 True indel: indel (<= 5bp) 19324775 19329146 103589 99210 CM091751.1 scf7180000184258 99.27 True fake: scaffold gap size wrong estimation (local) 19321847 19324515 106502 103841 CM091751.1 scf7180000184258 98.91 True fake: scaffold gap size wrong estimation (local) 19317475 19320879 110601 107190 CM091751.1 scf7180000184258 98.3 True fake: scaffold gap size wrong estimation (local) 19312014 19313569 112346 110791 CM091751.1 scf7180000184258 99.42 True indel: indel (<= 5bp) 19310904 19312013 113457 112348 CM091751.1 scf7180000184258 99.28 True fake: scaffold gap size wrong estimation (local) 19308953 19309499 115057 114511 CM091751.1 scf7180000184258 99.09 True indel: stretch of mismatches 19306442 19308893 117568 115117 CM091751.1 scf7180000184258 98.94 True fake: scaffold gap size wrong estimation (local) 19296363 19306088 127169 117686 CM091751.1 scf7180000184258 96.74 True indel: indel (> 5bp) 19290359 19296188 133227 127385 CM091751.1 scf7180000184258 99.31 True relocation, scaffold gap is present, inconsistency = 10136 19273113 19280067 140341 133383 CM091751.1 scf7180000184258 98.51 True fake: scaffold gap size wrong estimation (local) 19254042 19272861 159411 140618 CM091751.1 scf7180000184258 99.42 True fake: scaffold gap size wrong estimation (local) 19243990 19253809 169182 159539 CM091751.1 scf7180000184258 97.27 True indel: indel (> 5bp) 19241377 19243927 171818 169315 CM091751.1 scf7180000184258 97.45 True indel: indel (<= 5bp) 19240732 19241314 172466 171884 CM091751.1 scf7180000184258 98.8 True indel: indel (<= 5bp) 19239803 19240731 173396 172468 CM091751.1 scf7180000184258 99.68 True local misassembly 19238176 19239129 175024 174071 CM091751.1 scf7180000184258 99.48 True fake: scaffold gap size wrong estimation (local) 19234551 19235281 178429 177699 CM091751.1 scf7180000184258 99.86 True fake: scaffold gap size wrong estimation (local) 19229000 19231287 181460 179173 CM091751.1 scf7180000184258 99.74 True indel: indel (<= 5bp) 19228327 19228833 182131 181625 CM091751.1 scf7180000184258 99.8 True fake: scaffold gap size wrong estimation (local) 19225239 19228076 185105 182321 CM091751.1 scf7180000184258 96.31 True fake: scaffold gap size wrong estimation (local) 19222409 19224835 187702 185270 CM091751.1 scf7180000184258 99.42 True fake: scaffold gap size wrong estimation (local) 19220356 19222200 189748 187902 CM091751.1 scf7180000184258 99.19 True fake: scaffold gap size wrong estimation (local) 19215738 19220134 194346 189955 CM091751.1 scf7180000184258 98.97 True fake: scaffold gap size wrong estimation (local) 19204051 19215417 205783 194432 CM091751.1 scf7180000184258 98.71 True fake: scaffold gap size wrong estimation (local) 19198012 19202194 210751 206565 CM091751.1 scf7180000184258 98.64 True fake: scaffold gap size wrong estimation (local) 19194638 19197872 214169 210885 CM091751.1 scf7180000184258 95.94 True indel: indel (> 5bp) 19193319 19194597 215474 214195 CM091751.1 scf7180000184258 99.14 True local misassembly 19189601 19192815 218810 215598 CM091751.1 scf7180000184258 99.07 True fake: scaffold gap size wrong estimation (local) 19186356 19189462 222299 219191 CM091751.1 scf7180000184258 98.94 True fake: scaffold gap size wrong estimation (local) 19183379 19185195 224548 222732 CM091751.1 scf7180000184258 99.17 True fake: scaffold gap size wrong estimation (local) 19181604 19182168 226242 225678 CM091751.1 scf7180000184258 99.47 True fake: scaffold gap size wrong estimation (local) 19176703 19179008 230142 227839 CM091751.1 scf7180000184258 99.31 True fake: scaffold gap size wrong estimation (local) 19174998 19176455 231772 230314 CM091751.1 scf7180000184258 99.31 True fake: scaffold gap size wrong estimation (local) 19173831 19174549 232702 231984 CM091751.1 scf7180000184258 99.44 True indel: indel (<= 5bp) 19172339 19173830 234195 232704 CM091751.1 scf7180000184258 99.26 True local misassembly 19168694 19169832 236460 235322 CM091751.1 scf7180000184258 99.03 True fake: scaffold gap size wrong estimation (local) 19164683 19168447 240436 236680 CM091751.1 scf7180000184258 99.12 True fake: scaffold gap size wrong estimation (local) 19162127 19164234 242942 240834 CM091751.1 scf7180000184258 98.67 True fake: scaffold gap size wrong estimation (local) 19158918 19161864 246096 243207 CM091751.1 scf7180000184258 96.75 True fake: scaffold gap size wrong estimation (local) 19156974 19157935 247906 246945 CM091751.1 scf7180000184258 98.96 True fake: scaffold gap size wrong estimation (local) 19154626 19155970 250303 248959 CM091751.1 scf7180000184258 99.18 True indel: indel (<= 5bp) 19153733 19154625 251197 250305 CM091751.1 scf7180000184258 99.78 True indel: stretch of mismatches 19152226 19153304 252704 251626 CM091751.1 scf7180000184258 99.44 True local misassembly 19150916 19151465 253318 252769 CM091751.1 scf7180000184258 99.64 True indel: indel (<= 5bp) 19150198 19150765 254038 253471 CM091751.1 scf7180000184258 99.65 True translocation 7296676 7336358 254543 294198 CM091759.1 scf7180000184258 97.56 True fake: scaffold gap size wrong estimation (local) 7334769 7342816 294708 302748 CM091759.1 scf7180000184258 99.37 True fake: scaffold gap size wrong estimation (local) 7342933 7431889 302849 391970 CM091759.1 scf7180000184258 99.31 True fake: scaffold gap size wrong estimation (local) 7433299 7498553 393021 458269 CM091759.1 scf7180000184258 99.18 True fake: scaffold gap size wrong estimation (local) 7498657 7533981 458359 493681 CM091759.1 scf7180000184258 99.71 True fake: scaffold gap size wrong estimation (local) 7534055 7775877 493745 735534 CM091759.1 scf7180000184258 99.32 True indel: stretch of mismatches 7775966 8031867 735623 991582 CM091759.1 scf7180000184258 99.25 True indel: indel (> 5bp) 8031908 8160687 991637 1120443 CM091759.1 scf7180000184258 99.9 True indel: indel (> 5bp) 8160736 8216542 1120505 1176338 CM091759.1 scf7180000184258 99.45 True local misassembly 8215980 8337354 1176339 1297673 CM091759.1 scf7180000184258 99.56 True indel: indel (> 5bp) 8337456 8347614 1297789 1307939 CM091759.1 scf7180000184258 99.42 True fake: scaffold gap size wrong estimation (local) 8347816 8369072 1308098 1329112 CM091759.1 scf7180000184258 98.29 True indel: indel (> 5bp) 8369172 8389799 1329227 1349802 CM091759.1 scf7180000184258 99.15 True indel: indel (> 5bp) 8389810 8400816 1349833 1360394 CM091759.1 scf7180000184258 95.22 True fake: scaffold gap size wrong estimation (local) 8400961 8419281 1360526 1378870 CM091759.1 scf7180000184258 99.37 True local misassembly 8419501 8459340 1378964 1419342 CM091759.1 scf7180000184258 99.57 True fake: scaffold gap size wrong estimation (local) 8460906 8493795 1421155 1454089 CM091759.1 scf7180000184258 99.48 True relocation, inconsistency = 362499 8856295 9042691 1640125 1454090 CM091759.1 scf7180000184258 99.09 True fake: scaffold gap size wrong estimation (local) 8794403 8855669 1701348 1640376 CM091759.1 scf7180000184258 99.2 True fake: scaffold gap size wrong estimation (local) 8719402 8793397 1775922 1701931 CM091759.1 scf7180000184258 99.81 True fake: scaffold gap size wrong estimation (local) 8713613 8719172 1781704 1776131 CM091759.1 scf7180000184258 99.39 True fake: scaffold gap size wrong estimation (local) 8694609 8713527 1800799 1781857 CM091759.1 scf7180000184258 99.48 True fake: scaffold gap size wrong estimation (local) 8680775 8694529 1814367 1800925 CM091759.1 scf7180000184258 97.32 True local misassembly 8665041 8680025 1829860 1815174 CM091759.1 scf7180000184258 96.94 True fake: scaffold gap size wrong estimation (local) 8660271 8664939 1834627 1829955 CM091759.1 scf7180000184258 99.06 True fake: scaffold gap size wrong estimation (local) 8656208 8660066 1838688 1834827 CM091759.1 scf7180000184258 99.66 True local misassembly 8645006 8656143 1850132 1838955 CM091759.1 scf7180000184258 99.65 True fake: scaffold gap size wrong estimation (local) 8556949 8644950 1937964 1850181 CM091759.1 scf7180000184258 99.26 True translocation 11875744 11877215 1939438 1937965 CM091753.1 scf7180000184258 99.06 True fake: scaffold gap size wrong estimation (local) 11871287 11875651 1943917 1939548 CM091753.1 scf7180000184258 98.97 True fake: scaffold gap size wrong estimation (local) 11857628 11871155 1957839 1944033 CM091753.1 scf7180000184258 97.82 True fake: scaffold gap size wrong estimation (local) 11713033 11857405 2102025 1958026 CM091753.1 scf7180000184258 98.44 True fake: scaffold gap size wrong estimation (local) 11686483 11712788 2128748 2102217 CM091753.1 scf7180000184258 98.2 True fake: scaffold gap size wrong estimation (local) 11673986 11686350 2140680 2128847 CM091753.1 scf7180000184258 95.16 True relocation, inconsistency = 3819701 7841913 7854284 2153073 2140681 CM091753.1 scf7180000184258 99.28 True fake: scaffold gap size wrong estimation (local) 7765832 7841811 2229296 2153224 CM091753.1 scf7180000184258 99.37 True indel: indel (> 5bp) 7680012 7765805 2315115 2229343 CM091753.1 scf7180000184258 99.36 True indel: indel (> 5bp) 7620107 7679788 2374935 2315346 CM091753.1 scf7180000184258 99.17 True fake: not a misassembly (possible transposable element) 4439790 4441202 2374936 2376348 CM091768.1 scf7180000184258 100.0 True fake: not a misassembly (possible transposable element) 7558979 7619129 2436747 2376492 CM091753.1 scf7180000184258 99.25 True fake: scaffold gap size wrong estimation (local) 7551667 7558823 2443895 2436870 CM091753.1 scf7180000184258 96.95 True indel: indel (<= 5bp) 7546132 7551534 2449443 2444033 CM091753.1 scf7180000184258 99.37 True fake: scaffold gap size wrong estimation (local) 7517346 7545975 2478469 2449840 CM091753.1 scf7180000184258 99.4 True fake: scaffold gap size wrong estimation (local) 7502201 7517235 2493611 2478583 CM091753.1 scf7180000184258 99.57 True fake: scaffold gap size wrong estimation (local) 7456611 7502106 2539303 2493695 CM091753.1 scf7180000184258 99.25 True fake: scaffold gap size wrong estimation (local) 7374579 7456425 2621274 2539476 CM091753.1 scf7180000184258 99.52 True fake: scaffold gap size wrong estimation (local) 7247073 7374159 2748507 2621603 CM091753.1 scf7180000184258 99.48 True fake: scaffold gap size wrong estimation (local) 7205154 7246985 2790484 2748621 CM091753.1 scf7180000184258 99.38 True fake: scaffold gap size wrong estimation (local) 7176991 7204424 2818008 2790611 CM091753.1 scf7180000184258 99.17 True fake: scaffold gap size wrong estimation (local) 7171838 7176837 2823154 2818139 CM091753.1 scf7180000184258 99.44 True fake: scaffold gap size wrong estimation (local) 7162811 7171472 2832149 2823504 CM091753.1 scf7180000184258 99.33 True fake: scaffold gap size wrong estimation (local) 7134981 7162591 2859911 2832329 CM091753.1 scf7180000184258 99.07 True fake: scaffold gap size wrong estimation (local) 7024989 7134696 2969902 2860150 CM091753.1 scf7180000184258 99.47 True indel: indel (<= 5bp) 6991243 7024954 3003640 2969932 CM091753.1 scf7180000184258 99.38 True fake: scaffold gap size wrong estimation (local) 6952982 6991056 3041817 3003738 CM091753.1 scf7180000184258 99.35 True CONTIG scf7180000184258 3041869 misassembled 5416752 5435894 38 19169 CM091751.1 scf7180000184259 99.44 True fake: scaffold gap size wrong estimation (local) 5436014 5513512 19267 96882 CM091751.1 scf7180000184259 99.4 True indel: indel (> 5bp) 5513604 5614275 96956 197312 CM091751.1 scf7180000184259 99.01 True fake: scaffold gap size wrong estimation (local) 5614438 5628123 197456 211146 CM091751.1 scf7180000184259 99.31 True indel: indel (> 5bp) 5628259 5672446 211300 255388 CM091751.1 scf7180000184259 98.81 True fake: scaffold gap size wrong estimation (local) 5672550 5826879 255490 411466 CM091751.1 scf7180000184259 97.89 True fake: scaffold gap size wrong estimation (local) 5826975 5972645 411594 558906 CM091751.1 scf7180000184259 98.83 True indel: indel (> 5bp) 5972727 6033231 559039 619333 CM091751.1 scf7180000184259 98.56 True indel: indel (> 5bp) 6033370 6039844 619495 625966 CM091751.1 scf7180000184259 99.52 True fake: scaffold gap size wrong estimation (local) 6039965 6104838 626046 690805 CM091751.1 scf7180000184259 99.02 True indel: indel (<= 5bp) 6104919 6107280 690888 693247 CM091751.1 scf7180000184259 99.45 True indel: indel (> 5bp) 6107321 6132983 693303 719000 CM091751.1 scf7180000184259 99.1 True fake: scaffold gap size wrong estimation (local) 6133106 6178107 719085 764161 CM091751.1 scf7180000184259 99.03 True local misassembly 6178825 6283999 764912 870921 CM091751.1 scf7180000184259 97.7 True fake: scaffold gap size wrong estimation (local) 6284046 6297308 870970 884299 CM091751.1 scf7180000184259 99.15 True fake: scaffold gap size wrong estimation (local) 6297724 6315316 884408 901993 CM091751.1 scf7180000184259 99.58 True indel: indel (> 5bp) 6315401 6323685 902094 910326 CM091751.1 scf7180000184259 98.95 True fake: scaffold gap size wrong estimation (local) 6324167 6324803 910631 911267 CM091751.1 scf7180000184259 99.84 True indel: indel (> 5bp) 6325271 6325777 911753 912259 CM091751.1 scf7180000184259 100.0 True fake: scaffold gap size wrong estimation (local) 6326248 6335249 912615 921640 CM091751.1 scf7180000184259 99.17 True fake: scaffold gap size wrong estimation (local) 6335913 6462171 921861 1048176 CM091751.1 scf7180000184259 99.3 True indel: indel (> 5bp) 6462237 6479908 1048220 1065912 CM091751.1 scf7180000184259 99.51 True fake: scaffold gap size wrong estimation (local) 6480240 6495423 1066157 1081361 CM091751.1 scf7180000184259 99.59 True fake: scaffold gap size wrong estimation (local) 6495839 6526257 1081544 1111668 CM091751.1 scf7180000184259 98.57 True indel: indel (<= 5bp) 6526300 6550636 1111710 1135885 CM091751.1 scf7180000184259 98.57 True fake: scaffold gap size wrong estimation (local) 6551095 6571254 1136200 1156420 CM091751.1 scf7180000184259 99.5 True fake: scaffold gap size wrong estimation (local) 6572025 6682413 1156450 1266830 CM091751.1 scf7180000184259 99.53 True fake: scaffold gap size wrong estimation (local) 6684202 6693272 1268112 1277096 CM091751.1 scf7180000184259 98.47 True relocation, inconsistency = 7427 6700906 6702914 1277303 1279309 CM091751.1 scf7180000184259 99.25 True fake: scaffold gap size wrong estimation (local) 6703080 6712688 1279523 1289148 CM091751.1 scf7180000184259 99.19 True fake: scaffold gap size wrong estimation (local) 6713053 6742628 1289367 1319025 CM091751.1 scf7180000184259 99.34 True fake: scaffold gap size wrong estimation (local) 6742750 6798672 1319174 1375146 CM091751.1 scf7180000184259 99.46 True local misassembly 6799047 6826375 1375361 1402703 CM091751.1 scf7180000184259 99.2 True fake: scaffold gap size wrong estimation (local) 6826634 6925064 1402875 1500478 CM091751.1 scf7180000184259 98.09 True fake: scaffold gap size wrong estimation (local) 6925267 6940229 1500650 1515614 CM091751.1 scf7180000184259 99.27 True fake: scaffold gap size wrong estimation (local) 6940487 6985646 1515653 1560500 CM091751.1 scf7180000184259 97.31 True fake: scaffold gap size wrong estimation (local) 6986741 6988400 1561172 1562832 CM091751.1 scf7180000184259 99.64 True fake: scaffold gap size wrong estimation (local) 6988538 6998415 1562930 1572857 CM091751.1 scf7180000184259 98.47 True indel: indel (> 5bp) 6998590 6999447 1573045 1573902 CM091751.1 scf7180000184259 99.65 True indel: indel (> 5bp) 6999569 7000424 1574030 1574885 CM091751.1 scf7180000184259 99.65 True fake: scaffold gap size wrong estimation (local) 7001052 7001701 1575518 1576167 CM091751.1 scf7180000184259 98.15 True fake: scaffold gap size wrong estimation (local) 7003467 7010360 1577739 1584665 CM091751.1 scf7180000184259 98.65 True fake: scaffold gap size wrong estimation (local) 7010961 7014783 1585056 1588883 CM091751.1 scf7180000184259 99.11 True fake: scaffold gap size wrong estimation (local) 7015038 7023496 1589077 1597542 CM091751.1 scf7180000184259 99.25 True fake: scaffold gap size wrong estimation (local) 7024374 7134930 1598405 1709749 CM091751.1 scf7180000184259 99.02 True fake: scaffold gap size wrong estimation (local) 7135140 7148648 1709880 1723393 CM091751.1 scf7180000184259 99.42 True fake: scaffold gap size wrong estimation (local) 7148932 7186294 1723597 1760573 CM091751.1 scf7180000184259 98.24 True indel: indel (> 5bp) 7186337 7225553 1760653 1799393 CM091751.1 scf7180000184259 97.6 True fake: scaffold gap size wrong estimation (local) 7225841 7232984 1799648 1806795 CM091751.1 scf7180000184259 98.76 True indel: indel (> 5bp) 7233034 7249896 1806836 1823701 CM091751.1 scf7180000184259 99.51 True fake: scaffold gap size wrong estimation (local) 7250108 7314952 1823832 1887831 CM091751.1 scf7180000184259 98.39 True fake: scaffold gap size wrong estimation (local) 7315225 7359411 1888033 1932271 CM091751.1 scf7180000184259 99.41 True fake: not a misassembly (possible transposable element) 8290842 8292343 1933910 1932459 CM091760.1 scf7180000184259 96.21 True fake: not a misassembly (possible transposable element) 7359638 7431938 1933931 2006002 CM091751.1 scf7180000184259 98.92 True indel: indel (> 5bp) 7432363 7438693 2006435 2012837 CM091751.1 scf7180000184259 98.11 True fake: scaffold gap size wrong estimation (local) 7439143 7447132 2013171 2021168 CM091751.1 scf7180000184259 99.16 True indel: indel (<= 5bp) 7447209 7483054 2021246 2057082 CM091751.1 scf7180000184259 99.44 True fake: scaffold gap size wrong estimation (local) 7484983 7531759 2058095 2104914 CM091751.1 scf7180000184259 99.4 True fake: scaffold gap size wrong estimation (local) 7531922 7541208 2105034 2114320 CM091751.1 scf7180000184259 99.71 True indel: indel (> 5bp) 7541308 7602564 2114431 2175768 CM091751.1 scf7180000184259 99.42 True fake: scaffold gap size wrong estimation (local) 7604840 7767955 2177253 2340254 CM091751.1 scf7180000184259 99.38 True local misassembly 7768570 7808455 2340255 2380052 CM091751.1 scf7180000184259 98.46 True indel: indel (<= 5bp) 7808514 8073452 2380108 2645237 CM091751.1 scf7180000184259 99.52 True indel: indel (> 5bp) 8073607 8556051 2645431 3128063 CM091751.1 scf7180000184259 99.51 True indel: indel (> 5bp) 8556083 8731680 3128119 3303474 CM091751.1 scf7180000184259 99.45 True fake: scaffold gap size wrong estimation (local) 8731850 8790776 3303555 3362586 CM091751.1 scf7180000184259 99.47 True indel: indel (<= 5bp) 8790941 8890519 3362755 3461901 CM091751.1 scf7180000184259 99.16 True fake: scaffold gap size wrong estimation (local) 8890941 8932830 3462006 3503886 CM091751.1 scf7180000184259 99.44 True indel: indel (> 5bp) 8932881 9048633 3503944 3619775 CM091751.1 scf7180000184259 99.5 True indel: indel (> 5bp) 9048778 9167809 3619914 3738959 CM091751.1 scf7180000184259 99.62 True relocation, inconsistency = 65326 9233136 9364514 3738960 3869466 CM091751.1 scf7180000184259 99.02 True fake: scaffold gap size wrong estimation (local) 9365521 9525085 3869710 4028750 CM091751.1 scf7180000184259 99.12 True fake: scaffold gap size wrong estimation (local) 9525828 9645088 4029135 4147966 CM091751.1 scf7180000184259 99.18 True fake: scaffold gap size wrong estimation (local) 9645184 9862342 4148043 4365276 CM091751.1 scf7180000184259 99.19 True fake: scaffold gap size wrong estimation (local) 9862432 10028922 4365354 4534984 CM091751.1 scf7180000184259 97.65 True fake: scaffold gap size wrong estimation (local) 10029730 10140538 4535524 4646138 CM091751.1 scf7180000184259 99.45 True CONTIG scf7180000184259 4646138 misassembled 10570927 10593411 833 23330 CM091759.1 scf7180000184260 99.52 True fake: scaffold gap size wrong estimation (local) 10593639 10805033 23503 234897 CM091759.1 scf7180000184260 99.28 True fake: scaffold gap size wrong estimation (local) 10805321 10857660 234956 287292 CM091759.1 scf7180000184260 99.59 True indel: indel (<= 5bp) 10857713 11092301 287346 521524 CM091759.1 scf7180000184260 99.37 True indel: indel (> 5bp) 11092354 11132565 521589 561350 CM091759.1 scf7180000184260 98.41 True fake: scaffold gap size wrong estimation (local) 11132704 11142124 561492 570878 CM091759.1 scf7180000184260 99.43 True fake: scaffold gap size wrong estimation (local) 11143087 11146878 571389 575182 CM091759.1 scf7180000184260 99.68 True fake: scaffold gap size wrong estimation (local) 11147870 11160814 575575 588694 CM091759.1 scf7180000184260 97.81 True indel: indel (> 5bp) 11160903 11233442 588773 660184 CM091759.1 scf7180000184260 97.49 True indel: indel (> 5bp) 11233588 11255763 660383 682585 CM091759.1 scf7180000184260 99.55 True local misassembly 11256656 11265148 683400 691871 CM091759.1 scf7180000184260 99.29 True fake: scaffold gap size wrong estimation (local) 11265410 11387397 691974 813977 CM091759.1 scf7180000184260 99.52 True indel: indel (> 5bp) 11387697 11432684 814270 858761 CM091759.1 scf7180000184260 98.29 True fake: scaffold gap size wrong estimation (local) 11432852 11590799 858871 1016253 CM091759.1 scf7180000184260 99.08 True fake: scaffold gap size wrong estimation (local) 11590941 11820964 1016376 1245926 CM091759.1 scf7180000184260 99.36 True fake: not a misassembly (possible transposable element) 14674748 14675458 1245927 1246636 CM091754.1 scf7180000184260 99.08 True fake: not a misassembly (possible transposable element) 11820930 11980223 1246657 1405984 CM091759.1 scf7180000184260 99.67 True fake: scaffold gap size wrong estimation (local) 11980447 12144530 1406117 1569985 CM091759.1 scf7180000184260 99.42 True fake: scaffold gap size wrong estimation (local) 12144610 12157068 1570153 1582707 CM091759.1 scf7180000184260 98.73 True local misassembly 12159739 12169076 1582708 1592070 CM091759.1 scf7180000184260 97.5 True local misassembly 12173555 12177638 1592071 1596133 CM091759.1 scf7180000184260 97.93 True relocation, scaffold gap is present, inconsistency = -7663 12169997 12171822 1596155 1598015 CM091759.1 scf7180000184260 96.74 True local misassembly 12178122 12178826 1598016 1598720 CM091759.1 scf7180000184260 99.9 True indel: stretch of mismatches 12178881 12179383 1598775 1599277 CM091759.1 scf7180000184260 100.0 True indel: indel (<= 5bp) 12179852 12180538 1599748 1600434 CM091759.1 scf7180000184260 100.0 True indel: indel (<= 5bp) 12180898 12181749 1600795 1601646 CM091759.1 scf7180000184260 99.41 True indel: indel (<= 5bp) 12181774 12183380 1601673 1603279 CM091759.1 scf7180000184260 99.56 True indel: indel (<= 5bp) 12183381 12184746 1603281 1604646 CM091759.1 scf7180000184260 99.19 True indel: indel (<= 5bp) 12184747 12185411 1604649 1605313 CM091759.1 scf7180000184260 99.85 True indel: indel (<= 5bp) 12185413 12187188 1605314 1607089 CM091759.1 scf7180000184260 99.72 True indel: indel (<= 5bp) 12187189 12187706 1607091 1607608 CM091759.1 scf7180000184260 99.61 True fake: scaffold gap size wrong estimation (local) 12188070 12189481 1607868 1609279 CM091759.1 scf7180000184260 98.8 True fake: scaffold gap size wrong estimation (local) 12192536 12205336 1609789 1622588 CM091759.1 scf7180000184260 99.37 True fake: scaffold gap size wrong estimation (local) 12205605 12211403 1622783 1628575 CM091759.1 scf7180000184260 99.62 True fake: scaffold gap size wrong estimation (local) 12214840 12217608 1630367 1633135 CM091759.1 scf7180000184260 99.28 True local misassembly 12220062 12221072 1633981 1634991 CM091759.1 scf7180000184260 97.73 True indel: indel (> 5bp) 12221483 12222657 1635412 1636586 CM091759.1 scf7180000184260 98.13 True local misassembly 12223497 12225632 1637440 1639575 CM091759.1 scf7180000184260 99.53 True indel: indel (> 5bp) 12225820 12229146 1639794 1643120 CM091759.1 scf7180000184260 99.7 True local misassembly 12229764 12230758 1643741 1644735 CM091759.1 scf7180000184260 99.5 True indel: stretch of mismatches 12230836 12231991 1644813 1645968 CM091759.1 scf7180000184260 99.74 True indel: indel (<= 5bp) 12231993 12234733 1645969 1648709 CM091759.1 scf7180000184260 99.71 True indel: indel (<= 5bp) 12234734 12239276 1648712 1653254 CM091759.1 scf7180000184260 99.69 True fake: scaffold gap size wrong estimation (local) 12239620 12241708 1653619 1655707 CM091759.1 scf7180000184260 99.71 True indel: indel (> 5bp) 12241729 12242739 1655708 1656718 CM091759.1 scf7180000184260 97.63 True local misassembly 12243254 12244119 1657234 1658099 CM091759.1 scf7180000184260 99.65 True indel: indel (<= 5bp) 12244192 12244883 1658171 1658862 CM091759.1 scf7180000184260 99.86 True indel: indel (<= 5bp) 12244885 12245909 1658863 1659887 CM091759.1 scf7180000184260 99.9 True fake: scaffold gap size wrong estimation (local) 12246589 12247752 1660191 1661354 CM091759.1 scf7180000184260 99.48 True fake: scaffold gap size wrong estimation (local) 12248406 12398246 1662511 1812146 CM091759.1 scf7180000184260 99.5 True fake: scaffold gap size wrong estimation (local) 12399120 12406712 1812732 1820325 CM091759.1 scf7180000184260 99.72 True fake: scaffold gap size wrong estimation (local) 12406877 12410208 1820456 1823789 CM091759.1 scf7180000184260 99.61 True fake: not a misassembly (possible transposable element) 7040162 7041510 1824118 1825466 CM091758.1 scf7180000184260 99.56 True fake: not a misassembly (possible transposable element) 12409503 12413777 1825467 1829738 CM091759.1 scf7180000184260 99.04 True fake: scaffold gap size wrong estimation (local) 12414375 12491627 1830044 1906877 CM091759.1 scf7180000184260 98.25 True fake: scaffold gap size wrong estimation (local) 12491711 12494034 1906970 1909291 CM091759.1 scf7180000184260 99.4 True fake: scaffold gap size wrong estimation (local) 12495402 12496323 1910259 1911180 CM091759.1 scf7180000184260 99.57 True fake: scaffold gap size wrong estimation (local) 12497647 12499297 1912125 1913775 CM091759.1 scf7180000184260 98.49 True indel: stretch of mismatches 12499332 12499928 1913810 1914406 CM091759.1 scf7180000184260 99.83 True indel: indel (<= 5bp) 12500284 12503495 1914767 1917978 CM091759.1 scf7180000184260 99.47 True fake: scaffold gap size wrong estimation (local) 12503633 12505513 1918143 1920023 CM091759.1 scf7180000184260 99.73 True indel: indel (<= 5bp) 12505517 12507200 1920024 1921707 CM091759.1 scf7180000184260 99.7 True indel: indel (<= 5bp) 12507201 12508046 1921710 1922555 CM091759.1 scf7180000184260 99.53 True indel: indel (<= 5bp) 12508047 12509057 1922557 1923567 CM091759.1 scf7180000184260 99.9 True local misassembly 12510378 12511891 1924184 1925697 CM091759.1 scf7180000184260 99.6 True indel: indel (<= 5bp) 12512313 12512856 1926124 1926667 CM091759.1 scf7180000184260 99.82 True indel: indel (<= 5bp) 12513159 12513901 1926974 1927716 CM091759.1 scf7180000184260 99.87 True fake: scaffold gap size wrong estimation (local) 12514309 12516128 1927876 1929696 CM091759.1 scf7180000184260 99.23 True local misassembly 12516716 12521310 1929697 1934294 CM091759.1 scf7180000184260 99.37 True fake: scaffold gap size wrong estimation (local) 12521644 12527403 1934580 1940342 CM091759.1 scf7180000184260 99.57 True indel: indel (> 5bp) 12527586 12528822 1940542 1941778 CM091759.1 scf7180000184260 99.84 True indel: indel (<= 5bp) 12528876 12529608 1941830 1942562 CM091759.1 scf7180000184260 99.32 True local misassembly 12530303 12534597 1942563 1946857 CM091759.1 scf7180000184260 99.46 True indel: indel (<= 5bp) 12534598 12535784 1946860 1948046 CM091759.1 scf7180000184260 99.24 True indel: indel (<= 5bp) 12536095 12536640 1948362 1948907 CM091759.1 scf7180000184260 100.0 True indel: indel (<= 5bp) 12536696 12537475 1948958 1949737 CM091759.1 scf7180000184260 99.36 True indel: indel (<= 5bp) 12537476 12537987 1949739 1950250 CM091759.1 scf7180000184260 99.41 True indel: indel (<= 5bp) 12538157 12540550 1950417 1952810 CM091759.1 scf7180000184260 99.58 True fake: scaffold gap size wrong estimation (local) 12541475 12542302 1954183 1955010 CM091759.1 scf7180000184260 100.0 True fake: scaffold gap size wrong estimation (local) 12542648 12598622 1955289 2010779 CM091759.1 scf7180000184260 98.19 True fake: scaffold gap size wrong estimation (local) 12603930 12605793 2015447 2017308 CM091759.1 scf7180000184260 96.9 True fake: scaffold gap size wrong estimation (local) 12608089 12608625 2020961 2021497 CM091759.1 scf7180000184260 99.07 True fake: scaffold gap size wrong estimation (local) 12610225 12612994 2022705 2025451 CM091759.1 scf7180000184260 96.62 True fake: scaffold gap size wrong estimation (local) 12614849 12615867 2026566 2027601 CM091759.1 scf7180000184260 98.43 True fake: scaffold gap size wrong estimation (local) 12619537 12625489 2033912 2039868 CM091759.1 scf7180000184260 99.14 True fake: scaffold gap size wrong estimation (local) 12627520 12629314 2041239 2043053 CM091759.1 scf7180000184260 99.16 True fake: scaffold gap size wrong estimation (local) 12629450 12633864 2043184 2047598 CM091759.1 scf7180000184260 99.34 True fake: scaffold gap size wrong estimation (local) 12635767 12657329 2048202 2069031 CM091759.1 scf7180000184260 96.06 True fake: scaffold gap size wrong estimation (local) 12658459 12691816 2070043 2103391 CM091759.1 scf7180000184260 99.63 True fake: scaffold gap size wrong estimation (local) 12692120 12697145 2104265 2109265 CM091759.1 scf7180000184260 98.63 True fake: scaffold gap size wrong estimation (local) 12698022 12709985 2109892 2121854 CM091759.1 scf7180000184260 99.47 True fake: scaffold gap size wrong estimation (local) 12710057 12729946 2121989 2141862 CM091759.1 scf7180000184260 99.18 True fake: scaffold gap size wrong estimation (local) 12730052 12746695 2141972 2158562 CM091759.1 scf7180000184260 98.75 True fake: scaffold gap size wrong estimation (local) 12747832 12764142 2159627 2175942 CM091759.1 scf7180000184260 99.55 True fake: scaffold gap size wrong estimation (local) 12764353 12790994 2176101 2203007 CM091759.1 scf7180000184260 97.55 True local misassembly 12792774 12845053 2203042 2255418 CM091759.1 scf7180000184260 99.39 True translocation 3688308 3701779 2268892 2255419 CM091761.1 scf7180000184260 98.93 True fake: scaffold gap size wrong estimation (local) 3682095 3687325 2274607 2269360 CM091761.1 scf7180000184260 99.2 True local misassembly 3683134 3684216 2275770 2274682 CM091761.1 scf7180000184260 98.99 True fake: scaffold gap size wrong estimation (local) 3680617 3681864 2277186 2275918 CM091761.1 scf7180000184260 96.66 True fake: scaffold gap size wrong estimation (local) 3626856 3680555 2331751 2277977 CM091761.1 scf7180000184260 99.16 True fake: scaffold gap size wrong estimation (local) 3479269 3626390 2479371 2331912 CM091761.1 scf7180000184260 99.36 True fake: scaffold gap size wrong estimation (local) 3457153 3479101 2501545 2479504 CM091761.1 scf7180000184260 98.48 True indel: indel (> 5bp) 3433211 3457090 2525550 2501618 CM091761.1 scf7180000184260 99.29 True indel: indel (> 5bp) 3431865 3432994 2526938 2525810 CM091761.1 scf7180000184260 99.73 True fake: scaffold gap size wrong estimation (local) 3229097 3430992 2728661 2527261 CM091761.1 scf7180000184260 99.0 True translocation 1309098 1352777 2728662 2772303 CM091763.1 scf7180000184260 97.04 True fake: scaffold gap size wrong estimation (local) 1354576 1355603 2773632 2774657 CM091763.1 scf7180000184260 98.83 True fake: scaffold gap size wrong estimation (local) 1357172 1357774 2777037 2777641 CM091763.1 scf7180000184260 99.34 True fake: scaffold gap size wrong estimation (local) 1357912 1358677 2777770 2778546 CM091763.1 scf7180000184260 99.58 True fake: scaffold gap size wrong estimation (local) 1359683 1361184 2779251 2780769 CM091763.1 scf7180000184260 98.73 True fake: not a misassembly (possible transposable element) 3916484 3917045 2781091 2781652 CM091768.1 scf7180000184260 100.0 True fake: not a misassembly (possible transposable element) 1361708 1362296 2781841 2782429 CM091763.1 scf7180000184260 96.6 True fake: scaffold gap size wrong estimation (local) 1365996 1366814 2784997 2785806 CM091763.1 scf7180000184260 98.37 True fake: scaffold gap size wrong estimation (local) 1368279 1382289 2787206 2801188 CM091763.1 scf7180000184260 99.66 True translocation 15809579 15811872 2803569 2801189 CM091757.1 scf7180000184260 97.2 True fake: scaffold gap size wrong estimation (local) 15801837 15809432 2811254 2803727 CM091757.1 scf7180000184260 95.55 True indel: indel (> 5bp) 15800394 15801404 2812705 2811674 CM091757.1 scf7180000184260 99.7 True fake: scaffold gap size wrong estimation (local) 15797866 15800279 2815465 2813042 CM091757.1 scf7180000184260 99.08 True translocation, scaffold gap is present 1499057 1500369 2817080 2815768 CM091764.1 scf7180000184260 100.0 True fake: scaffold gap size wrong estimation (local) 1497463 1498017 2818706 2818133 CM091764.1 scf7180000184260 99.8 True fake: scaffold gap size wrong estimation (local) 1493330 1495648 2823160 2820826 CM091764.1 scf7180000184260 97.99 True fake: scaffold gap size wrong estimation (local) 1490643 1491704 2825624 2824563 CM091764.1 scf7180000184260 99.73 True fake: not a misassembly (possible transposable element) 15493501 15495463 2827575 2825625 CM091757.1 scf7180000184260 98.22 True fake: not a misassembly (possible transposable element) 1486541 1489730 2830821 2827630 CM091764.1 scf7180000184260 99.91 True fake: not a misassembly (possible transposable element) 8348743 8349544 2830822 2831623 CM091767.1 scf7180000184260 99.68 True fake: not a misassembly (possible transposable element) 1485287 1485840 2832197 2831644 CM091764.1 scf7180000184260 100.0 True translocation, scaffold gap is present 8349970 8350806 2832218 2833054 CM091767.1 scf7180000184260 100.0 True fake: scaffold gap size wrong estimation (local) 8351620 8352939 2833691 2835009 CM091767.1 scf7180000184260 99.62 True fake: scaffold gap size wrong estimation (local) 8353706 8357137 2835568 2838999 CM091767.1 scf7180000184260 99.97 True fake: not a misassembly (possible transposable element) 1864453 1865358 2839000 2839905 CM091764.1 scf7180000184260 99.6 True fake: not a misassembly (possible transposable element) 8357042 8357896 2840060 2840914 CM091767.1 scf7180000184260 99.53 True relocation, scaffold gap is present, inconsistency = 834669 9193847 9194520 2842196 2842883 CM091767.1 scf7180000184260 100.0 True fake: scaffold gap size wrong estimation (local) 9195852 9202504 2843588 2850018 CM091767.1 scf7180000184260 96.24 True fake: scaffold gap size wrong estimation (local) 9202759 9203860 2850118 2851219 CM091767.1 scf7180000184260 97.91 True indel: indel (<= 5bp) 9203861 9205411 2851221 2852771 CM091767.1 scf7180000184260 99.48 True fake: scaffold gap size wrong estimation (local) 9206299 9207478 2853438 2854617 CM091767.1 scf7180000184260 97.37 True fake: scaffold gap size wrong estimation (local) 9207948 9208681 2855350 2856083 CM091767.1 scf7180000184260 99.86 True fake: scaffold gap size wrong estimation (local) 9209393 9211182 2856741 2858560 CM091767.1 scf7180000184260 98.17 True translocation 1418275 1419353 2858561 2859640 CM091764.1 scf7180000184260 99.85 True fake: scaffold gap size wrong estimation (local) 1419621 1422198 2860034 2862611 CM091764.1 scf7180000184260 99.42 True fake: scaffold gap size wrong estimation (local) 1422417 1424045 2863094 2864722 CM091764.1 scf7180000184260 99.94 True translocation 14223061 14227880 2869722 2864733 CM091755.1 scf7180000184260 96.42 True fake: scaffold gap size wrong estimation (local) 14197193 14222755 2895005 2869861 CM091755.1 scf7180000184260 95.26 True fake: scaffold gap size wrong estimation (local) 14194876 14196343 2897057 2895590 CM091755.1 scf7180000184260 99.8 True fake: scaffold gap size wrong estimation (local) 14193788 14194875 2898163 2897076 CM091755.1 scf7180000184260 99.54 True indel: indel (<= 5bp) 14190724 14193768 2901231 2898187 CM091755.1 scf7180000184260 99.61 True fake: scaffold gap size wrong estimation (local) 14173506 14189745 2918889 2902603 CM091755.1 scf7180000184260 98.94 True fake: scaffold gap size wrong estimation (local) 14166948 14173322 2925202 2918982 CM091755.1 scf7180000184260 96.7 True fake: scaffold gap size wrong estimation (local) 14161575 14166277 2930302 2925591 CM091755.1 scf7180000184260 99.31 True translocation 12911182 12944206 2963244 2930303 CM091751.1 scf7180000184260 99.07 True indel: indel (> 5bp) 12854944 12911049 3019437 2963368 CM091751.1 scf7180000184260 99.5 True fake: scaffold gap size wrong estimation (local) 12651826 12854695 3220980 3019656 CM091751.1 scf7180000184260 98.23 True indel: indel (<= 5bp) 12561791 12651532 3311194 3221270 CM091751.1 scf7180000184260 99.38 True fake: scaffold gap size wrong estimation (local) 12464876 12561677 3408112 3311269 CM091751.1 scf7180000184260 98.95 True translocation 6642455 6658643 3408113 3424307 CM091754.1 scf7180000184260 98.8 True fake: scaffold gap size wrong estimation (local) 6659275 6664030 3425191 3429922 CM091754.1 scf7180000184260 98.51 True fake: scaffold gap size wrong estimation (local) 6664279 6678877 3430009 3444707 CM091754.1 scf7180000184260 98.66 True fake: scaffold gap size wrong estimation (local) 6679568 6680139 3444896 3445467 CM091754.1 scf7180000184260 99.3 True indel: indel (<= 5bp) 6680365 6682854 3445698 3448187 CM091754.1 scf7180000184260 99.16 True indel: indel (> 5bp) 6682861 6684352 3448188 3449679 CM091754.1 scf7180000184260 99.8 True fake: scaffold gap size wrong estimation (local) 6685909 6687502 3451246 3452839 CM091754.1 scf7180000184260 100.0 True fake: scaffold gap size wrong estimation (local) 6687503 6688036 3452864 3453397 CM091754.1 scf7180000184260 100.0 True fake: scaffold gap size wrong estimation (extensive) 6698387 6699540 3453860 3455013 CM091754.1 scf7180000184260 97.92 True local misassembly 6700663 6703474 3456005 3458816 CM091754.1 scf7180000184260 98.97 True indel: indel (<= 5bp) 6703475 6704142 3458819 3459486 CM091754.1 scf7180000184260 99.25 True indel: indel (<= 5bp) 6704143 6706468 3459488 3461813 CM091754.1 scf7180000184260 99.4 True local misassembly 6707260 6710038 3462618 3465396 CM091754.1 scf7180000184260 99.57 True indel: indel (<= 5bp) 6710339 6712120 3465699 3467480 CM091754.1 scf7180000184260 99.83 True indel: indel (<= 5bp) 6712121 6713304 3467482 3468665 CM091754.1 scf7180000184260 99.83 True indel: indel (<= 5bp) 6713306 6715440 3468666 3470800 CM091754.1 scf7180000184260 99.81 True indel: indel (<= 5bp) 6715443 6716198 3470801 3471556 CM091754.1 scf7180000184260 99.6 True indel: indel (> 5bp) 6716407 6716980 3471772 3472345 CM091754.1 scf7180000184260 99.83 True indel: indel (> 5bp) 6716990 6717644 3472346 3473000 CM091754.1 scf7180000184260 99.24 True indel: indel (<= 5bp) 6717664 6719158 3473022 3474516 CM091754.1 scf7180000184260 99.73 True indel: indel (<= 5bp) 6719159 6720105 3474518 3475464 CM091754.1 scf7180000184260 99.89 True local misassembly 6720202 6720724 3475465 3475987 CM091754.1 scf7180000184260 95.22 True local misassembly 6721661 6722564 3476814 3477717 CM091754.1 scf7180000184260 98.89 True fake: scaffold gap size wrong estimation (local) 6723254 6724587 3478571 3479904 CM091754.1 scf7180000184260 99.63 True local misassembly 6726092 6727013 3481412 3482333 CM091754.1 scf7180000184260 99.24 True fake: scaffold gap size wrong estimation (local) 6728026 6728821 3483125 3483920 CM091754.1 scf7180000184260 99.62 True indel: indel (> 5bp) 6728842 6732013 3483921 3487092 CM091754.1 scf7180000184260 98.01 True local misassembly 6733716 6734222 3487538 3488044 CM091754.1 scf7180000184260 98.82 True indel: indel (<= 5bp) 6734383 6735618 3488203 3489438 CM091754.1 scf7180000184260 99.6 True indel: indel (<= 5bp) 6735619 6736285 3489441 3490107 CM091754.1 scf7180000184260 99.25 True indel: indel (<= 5bp) 6736315 6739203 3490136 3493024 CM091754.1 scf7180000184260 98.86 True indel: indel (<= 5bp) 6739260 6739788 3493085 3493613 CM091754.1 scf7180000184260 99.81 True indel: indel (<= 5bp) 6739816 6741456 3493636 3495276 CM091754.1 scf7180000184260 99.39 True indel: indel (<= 5bp) 6741457 6742273 3495278 3496094 CM091754.1 scf7180000184260 99.63 True indel: indel (<= 5bp) 6742274 6742852 3496096 3496674 CM091754.1 scf7180000184260 100.0 True local misassembly 6743829 6744755 3497653 3498579 CM091754.1 scf7180000184260 99.89 True local misassembly 6745506 6746123 3499297 3499914 CM091754.1 scf7180000184260 99.51 True indel: indel (<= 5bp) 6746126 6750937 3499915 3504726 CM091754.1 scf7180000184260 99.75 True indel: indel (<= 5bp) 6750938 6752788 3504728 3506578 CM091754.1 scf7180000184260 99.89 True indel: indel (<= 5bp) 6752790 6754212 3506579 3508001 CM091754.1 scf7180000184260 99.93 True indel: indel (<= 5bp) 6754214 6756564 3508002 3510352 CM091754.1 scf7180000184260 99.66 True indel: indel (<= 5bp) 6756791 6757591 3510577 3511377 CM091754.1 scf7180000184260 99.88 True indel: indel (> 5bp) 6757592 6758315 3511384 3512107 CM091754.1 scf7180000184260 97.51 True indel: indel (<= 5bp) 6758316 6762239 3512109 3516032 CM091754.1 scf7180000184260 99.46 True local misassembly 6763209 6764816 3517022 3518629 CM091754.1 scf7180000184260 99.81 True indel: indel (<= 5bp) 6764817 6765325 3518631 3519139 CM091754.1 scf7180000184260 99.61 True indel: indel (<= 5bp) 6765326 6766116 3519141 3519931 CM091754.1 scf7180000184260 99.49 True indel: indel (<= 5bp) 6766117 6769803 3519933 3523619 CM091754.1 scf7180000184260 99.59 True indel: indel (> 5bp) 6769804 6772717 3523626 3526539 CM091754.1 scf7180000184260 99.73 True indel: stretch of mismatches 6773103 6774015 3526925 3527837 CM091754.1 scf7180000184260 99.89 True indel: indel (<= 5bp) 6774016 6780086 3527839 3533909 CM091754.1 scf7180000184260 99.72 True indel: indel (<= 5bp) 6780094 6781378 3533921 3535205 CM091754.1 scf7180000184260 99.92 True indel: indel (<= 5bp) 6781379 6782009 3535207 3535837 CM091754.1 scf7180000184260 99.21 True indel: indel (<= 5bp) 6782215 6782823 3536046 3536654 CM091754.1 scf7180000184260 99.67 True indel: indel (<= 5bp) 6782824 6783536 3536656 3537368 CM091754.1 scf7180000184260 100.0 True indel: indel (<= 5bp) 6783718 6784371 3537552 3538205 CM091754.1 scf7180000184260 99.69 True indel: indel (<= 5bp) 6784377 6785304 3538206 3539133 CM091754.1 scf7180000184260 99.68 True indel: indel (<= 5bp) 6785305 6787444 3539136 3541275 CM091754.1 scf7180000184260 99.81 True indel: stretch of mismatches 6787897 6789402 3541728 3543233 CM091754.1 scf7180000184260 99.8 True fake: scaffold gap size wrong estimation (local) 6789625 6790445 3543510 3544330 CM091754.1 scf7180000184260 99.88 True indel: indel (<= 5bp) 6790447 6791371 3544331 3545255 CM091754.1 scf7180000184260 99.46 True indel: stretch of mismatches 6791492 6792467 3545376 3546351 CM091754.1 scf7180000184260 99.9 True indel: indel (> 5bp) 6792484 6793677 3546352 3547545 CM091754.1 scf7180000184260 99.92 True indel: indel (<= 5bp) 6793793 6794689 3547662 3548558 CM091754.1 scf7180000184260 100.0 True indel: indel (<= 5bp) 6794690 6795311 3548560 3549181 CM091754.1 scf7180000184260 99.2 True indel: indel (<= 5bp) 6795312 6796434 3549183 3550305 CM091754.1 scf7180000184260 99.82 True local misassembly 6796981 6798151 3550853 3552023 CM091754.1 scf7180000184260 99.83 True indel: stretch of mismatches 6798305 6799347 3552177 3553219 CM091754.1 scf7180000184260 99.81 True indel: indel (> 5bp) 6799730 6802373 3553589 3556232 CM091754.1 scf7180000184260 99.77 True indel: indel (<= 5bp) 6802774 6803301 3556631 3557158 CM091754.1 scf7180000184260 99.81 True local misassembly 6803800 6806634 3557661 3560495 CM091754.1 scf7180000184260 99.68 True indel: indel (<= 5bp) 6806635 6808436 3560497 3562298 CM091754.1 scf7180000184260 100.0 True indel: indel (<= 5bp) 6808597 6809274 3562461 3563138 CM091754.1 scf7180000184260 99.56 True indel: indel (> 5bp) 6809313 6810859 3563139 3564685 CM091754.1 scf7180000184260 99.42 True indel: indel (<= 5bp) 6810862 6813356 3564686 3567180 CM091754.1 scf7180000184260 99.88 True indel: indel (<= 5bp) 6813364 6813882 3567186 3567704 CM091754.1 scf7180000184260 100.0 True indel: indel (<= 5bp) 6813883 6818334 3567706 3572157 CM091754.1 scf7180000184260 99.82 True indel: indel (<= 5bp) 6818650 6822936 3572472 3576758 CM091754.1 scf7180000184260 99.7 True indel: indel (<= 5bp) 6822949 6826435 3576770 3580256 CM091754.1 scf7180000184260 99.91 True indel: indel (<= 5bp) 6826436 6828280 3580258 3582102 CM091754.1 scf7180000184260 99.62 True indel: indel (<= 5bp) 6828281 6829692 3582104 3583515 CM091754.1 scf7180000184260 99.5 True indel: indel (> 5bp) 6829693 6830771 3583523 3584601 CM091754.1 scf7180000184260 99.91 True indel: indel (<= 5bp) 6830772 6832163 3584603 3585994 CM091754.1 scf7180000184260 99.71 True indel: indel (<= 5bp) 6832164 6832691 3585996 3586523 CM091754.1 scf7180000184260 99.81 True indel: stretch of mismatches 6832801 6833580 3586633 3587412 CM091754.1 scf7180000184260 99.74 True indel: indel (<= 5bp) 6833900 6836621 3587733 3590454 CM091754.1 scf7180000184260 100.0 True indel: indel (<= 5bp) 6836622 6840903 3590456 3594737 CM091754.1 scf7180000184260 99.95 True indel: indel (<= 5bp) 6840904 6842837 3594739 3596672 CM091754.1 scf7180000184260 99.95 True indel: indel (<= 5bp) 6842838 6843572 3596674 3597408 CM091754.1 scf7180000184260 100.0 True indel: stretch of mismatches 6843972 6853666 3597808 3607502 CM091754.1 scf7180000184260 99.97 True indel: indel (<= 5bp) 6853667 6860655 3607504 3614492 CM091754.1 scf7180000184260 99.91 True indel: indel (<= 5bp) 6860657 6861823 3614493 3615659 CM091754.1 scf7180000184260 99.83 True indel: indel (<= 5bp) 6861827 6864157 3615660 3617990 CM091754.1 scf7180000184260 100.0 True indel: indel (<= 5bp) 6864158 6865315 3617992 3619149 CM091754.1 scf7180000184260 99.91 True indel: indel (<= 5bp) 6865317 6866606 3619150 3620439 CM091754.1 scf7180000184260 100.0 True relocation, inconsistency = 15423 6882030 6883138 3620440 3621548 CM091754.1 scf7180000184260 100.0 True indel: indel (<= 5bp) 6883139 6884249 3621550 3622660 CM091754.1 scf7180000184260 99.82 True indel: indel (<= 5bp) 6884250 6890393 3622662 3628805 CM091754.1 scf7180000184260 99.93 True indel: indel (> 5bp) 6890394 6896955 3628813 3635374 CM091754.1 scf7180000184260 99.91 True indel: indel (<= 5bp) 6896957 6902441 3635375 3640859 CM091754.1 scf7180000184260 99.93 True indel: indel (<= 5bp) 6902445 6905271 3640860 3643686 CM091754.1 scf7180000184260 99.96 True local misassembly 6906020 6907973 3644438 3646391 CM091754.1 scf7180000184260 99.85 True indel: indel (<= 5bp) 6908294 6909262 3646715 3647683 CM091754.1 scf7180000184260 99.9 True local misassembly 6910140 6910938 3648562 3649360 CM091754.1 scf7180000184260 99.87 True indel: indel (<= 5bp) 6910940 6911497 3649361 3649918 CM091754.1 scf7180000184260 100.0 True indel: indel (<= 5bp) 6911498 6914240 3649920 3652662 CM091754.1 scf7180000184260 99.45 True indel: indel (<= 5bp) 6914242 6915559 3652663 3653980 CM091754.1 scf7180000184260 99.85 True local misassembly 6916152 6917472 3654580 3655900 CM091754.1 scf7180000184260 99.17 True indel: indel (> 5bp) 6917506 6918975 3655941 3657410 CM091754.1 scf7180000184260 99.66 True indel: indel (<= 5bp) 6919157 6921631 3657593 3660067 CM091754.1 scf7180000184260 99.84 True local misassembly 6922176 6922804 3660594 3661222 CM091754.1 scf7180000184260 99.84 True indel: indel (<= 5bp) 6923156 6924445 3661577 3662866 CM091754.1 scf7180000184260 99.84 True indel: indel (<= 5bp) 6924665 6925844 3663088 3664267 CM091754.1 scf7180000184260 99.58 True local misassembly 6927698 6928433 3666122 3666857 CM091754.1 scf7180000184260 99.59 True indel: indel (> 5bp) 6928664 7133277 3667052 3871488 CM091754.1 scf7180000184260 99.57 True fake: scaffold gap size wrong estimation (local) 7133551 7176777 3871685 3914844 CM091754.1 scf7180000184260 98.77 True indel: indel (> 5bp) 7176830 7221762 3914889 3959742 CM091754.1 scf7180000184260 98.87 True fake: scaffold gap size wrong estimation (local) 7222652 7236735 3960509 3974592 CM091754.1 scf7180000184260 99.43 True fake: scaffold gap size wrong estimation (local) 7236926 7248803 3974744 3986434 CM091754.1 scf7180000184260 97.42 True translocation 14551343 14555770 3990867 3986435 CM091758.1 scf7180000184260 99.54 True fake: scaffold gap size wrong estimation (local) 14547743 14550207 3993875 3991382 CM091758.1 scf7180000184260 97.04 True fake: not a misassembly (possible transposable element) 961561 962298 3993876 3994612 CM091755.1 scf7180000184260 99.75 True fake: not a misassembly (possible transposable element) 14541765 14547701 4000696 3994642 CM091758.1 scf7180000184260 97.6 True local misassembly 14513291 14541245 4028072 4000697 CM091758.1 scf7180000184260 97.17 True fake: scaffold gap size wrong estimation (local) 14500424 14513135 4040754 4028187 CM091758.1 scf7180000184260 96.57 True fake: scaffold gap size wrong estimation (local) 14499300 14499967 4041660 4040993 CM091758.1 scf7180000184260 99.85 True indel: indel (<= 5bp) 14498728 14499268 4042235 4041695 CM091758.1 scf7180000184260 100.0 True fake: scaffold gap size wrong estimation (local) 14495850 14497342 4045407 4043915 CM091758.1 scf7180000184260 99.6 True indel: indel (<= 5bp) 14494724 14495848 4046532 4045408 CM091758.1 scf7180000184260 99.47 True indel: indel (<= 5bp) 14493897 14494723 4047360 4046534 CM091758.1 scf7180000184260 99.88 True indel: indel (> 5bp) 14492740 14493396 4048505 4047849 CM091758.1 scf7180000184260 99.7 True indel: indel (<= 5bp) 14490603 14492738 4050641 4048506 CM091758.1 scf7180000184260 99.3 True indel: indel (<= 5bp) 14489574 14490602 4051671 4050643 CM091758.1 scf7180000184260 99.42 True indel: indel (> 5bp) 14488282 14489435 4052991 4051838 CM091758.1 scf7180000184260 99.65 True indel: indel (> 5bp) 14487769 14488275 4053498 4052992 CM091758.1 scf7180000184260 99.8 True indel: indel (> 5bp) 14485859 14487720 4055400 4053539 CM091758.1 scf7180000184260 99.57 True indel: indel (<= 5bp) 14484300 14485857 4056958 4055401 CM091758.1 scf7180000184260 97.11 True fake: scaffold gap size wrong estimation (local) 14482991 14483625 4058165 4057531 CM091758.1 scf7180000184260 99.69 True indel: indel (<= 5bp) 14482467 14482989 4058688 4058166 CM091758.1 scf7180000184260 99.04 True fake: scaffold gap size wrong estimation (local) 14477642 14478279 4062895 4062258 CM091758.1 scf7180000184260 99.22 True indel: indel (<= 5bp) 14475660 14477369 4064879 4063170 CM091758.1 scf7180000184260 99.53 True local misassembly 14474407 14475050 4066128 4065485 CM091758.1 scf7180000184260 99.69 True local misassembly 14471130 14473659 4068853 4066324 CM091758.1 scf7180000184260 99.13 True fake: scaffold gap size wrong estimation (local) 14466915 14470543 4072734 4069108 CM091758.1 scf7180000184260 99.01 True fake: scaffold gap size wrong estimation (local) 14455107 14466554 4084016 4072888 CM091758.1 scf7180000184260 96.3 True fake: scaffold gap size wrong estimation (local) 14430872 14453373 4107432 4084898 CM091758.1 scf7180000184260 99.05 True CONTIG scf7180000184260 4107456 misassembled 17640217 17641014 15 812 CM091751.1 scf7180000184261 99.87 True fake: scaffold gap size wrong estimation (local) 17642489 17645414 2255 5147 CM091751.1 scf7180000184261 98.24 True fake: scaffold gap size wrong estimation (local) 17646980 17657291 6314 16357 CM091751.1 scf7180000184261 96.8 True translocation, scaffold gap is present 241476 247044 16785 22365 CM091761.1 scf7180000184261 97.82 True translocation 10875330 10900276 22366 47500 CM091758.1 scf7180000184261 98.55 True fake: scaffold gap size wrong estimation (local) 10900470 10988836 47877 135466 CM091758.1 scf7180000184261 98.62 True indel: indel (> 5bp) 10989195 10990619 135839 137263 CM091758.1 scf7180000184261 99.65 True local misassembly 10991288 10991889 137929 138530 CM091758.1 scf7180000184261 100.0 True indel: indel (<= 5bp) 10991890 10993489 138535 140134 CM091758.1 scf7180000184261 99.94 True indel: indel (<= 5bp) 10993490 10994532 140136 141178 CM091758.1 scf7180000184261 99.62 True indel: indel (<= 5bp) 10994561 10995679 141212 142330 CM091758.1 scf7180000184261 99.82 True indel: indel (<= 5bp) 10995681 10996459 142331 143109 CM091758.1 scf7180000184261 99.36 True indel: indel (<= 5bp) 10996461 10997306 143110 143955 CM091758.1 scf7180000184261 99.88 True indel: indel (<= 5bp) 10997320 11000148 143966 146794 CM091758.1 scf7180000184261 99.72 True indel: indel (<= 5bp) 11000620 11001582 147268 148230 CM091758.1 scf7180000184261 99.79 True indel: indel (<= 5bp) 11001584 11008450 148231 155097 CM091758.1 scf7180000184261 99.71 True indel: indel (<= 5bp) 11008451 11010222 155099 156870 CM091758.1 scf7180000184261 99.38 True indel: indel (> 5bp) 11010223 11013856 156880 160513 CM091758.1 scf7180000184261 99.72 True indel: indel (<= 5bp) 11013858 11015753 160514 162409 CM091758.1 scf7180000184261 99.74 True indel: indel (> 5bp) 11016056 11016666 162724 163334 CM091758.1 scf7180000184261 99.84 True indel: indel (<= 5bp) 11016668 11017848 163335 164515 CM091758.1 scf7180000184261 99.49 True indel: indel (<= 5bp) 11017849 11019113 164517 165781 CM091758.1 scf7180000184261 99.76 True local misassembly 11019709 11020275 166307 166873 CM091758.1 scf7180000184261 99.65 True indel: indel (> 5bp) 11020276 11021709 166886 168319 CM091758.1 scf7180000184261 99.51 True indel: stretch of mismatches 11021766 11022802 168376 169412 CM091758.1 scf7180000184261 99.9 True indel: indel (> 5bp) 11022813 11023997 169413 170597 CM091758.1 scf7180000184261 97.89 True indel: indel (> 5bp) 11023998 11027091 170604 173697 CM091758.1 scf7180000184261 99.61 True indel: stretch of mismatches 11027585 11029934 174191 176540 CM091758.1 scf7180000184261 99.91 True indel: indel (<= 5bp) 11029935 11033476 176542 180083 CM091758.1 scf7180000184261 99.8 True local misassembly 11033957 11036425 180587 183055 CM091758.1 scf7180000184261 99.92 True indel: indel (> 5bp) 11036426 11038180 183064 184818 CM091758.1 scf7180000184261 99.89 True local misassembly 11041872 11043586 184819 186533 CM091758.1 scf7180000184261 99.77 True indel: indel (<= 5bp) 11043587 11046161 186535 189109 CM091758.1 scf7180000184261 99.88 True indel: indel (<= 5bp) 11046162 11046928 189111 189877 CM091758.1 scf7180000184261 100.0 True indel: indel (> 5bp) 11047036 11050920 189991 193877 CM091758.1 scf7180000184261 99.31 True translocation 1568412 1579490 204964 193878 CM091751.1 scf7180000184261 99.19 True indel: indel (> 5bp) 1538027 1568360 235301 205051 CM091751.1 scf7180000184261 98.52 True indel: indel (> 5bp) 1513444 1537925 260021 235387 CM091751.1 scf7180000184261 98.47 True fake: scaffold gap size wrong estimation (local) 1499185 1513301 274280 260128 CM091751.1 scf7180000184261 98.97 True indel: indel (> 5bp) 1465036 1499173 308439 274304 CM091751.1 scf7180000184261 99.0 True fake: scaffold gap size wrong estimation (local) 1434431 1464843 338870 308493 CM091751.1 scf7180000184261 99.15 True translocation 6219935 6221983 338871 340920 CM091755.1 scf7180000184261 99.34 True CONTIG scf7180000184261 340920 misassembled 5138647 5143180 1 4578 CM091766.1 scf7180000184262 98.73 True fake: scaffold gap size wrong estimation (local) 5143256 5145433 4636 6814 CM091766.1 scf7180000184262 98.35 True fake: scaffold gap size wrong estimation (local) 5146275 5178400 7339 39724 CM091766.1 scf7180000184262 98.71 True indel: indel (> 5bp) 5178855 5180126 40161 41432 CM091766.1 scf7180000184262 99.53 True indel: indel (<= 5bp) 5180291 5181103 41596 42408 CM091766.1 scf7180000184262 100.0 True indel: indel (<= 5bp) 5181460 5181959 42767 43266 CM091766.1 scf7180000184262 100.0 True local misassembly 5182592 5183273 44044 44725 CM091766.1 scf7180000184262 99.85 True indel: indel (<= 5bp) 5183274 5184311 44727 45764 CM091766.1 scf7180000184262 99.52 True local misassembly 5185324 5187416 46490 48582 CM091766.1 scf7180000184262 99.09 True local misassembly 5188045 5188798 49212 49965 CM091766.1 scf7180000184262 99.34 True indel: indel (<= 5bp) 5188811 5189643 49980 50812 CM091766.1 scf7180000184262 99.76 True local misassembly 5190259 5191171 51157 52069 CM091766.1 scf7180000184262 99.45 True indel: stretch of mismatches 5191202 5192434 52100 53332 CM091766.1 scf7180000184262 99.76 True fake: scaffold gap size wrong estimation (local) 5192750 5194161 53678 55089 CM091766.1 scf7180000184262 99.29 True local misassembly 5194587 5195319 55090 55822 CM091766.1 scf7180000184262 99.45 True fake: scaffold gap size wrong estimation (local) 5195708 5200975 56061 61329 CM091766.1 scf7180000184262 99.22 True fake: scaffold gap size wrong estimation (local) 5201445 5206676 61651 66893 CM091766.1 scf7180000184262 97.3 True indel: indel (> 5bp) 5207063 5229327 67250 89172 CM091766.1 scf7180000184262 95.07 True indel: indel (<= 5bp) 5229388 5234631 89232 94485 CM091766.1 scf7180000184262 98.86 True fake: scaffold gap size wrong estimation (local) 5235347 5243655 95676 104017 CM091766.1 scf7180000184262 98.89 True fake: scaffold gap size wrong estimation (local) 5243854 5250052 104174 110389 CM091766.1 scf7180000184262 98.99 True fake: scaffold gap size wrong estimation (local) 5250597 5255685 110821 115918 CM091766.1 scf7180000184262 99.39 True fake: scaffold gap size wrong estimation (local) 5255950 5262910 116081 122980 CM091766.1 scf7180000184262 98.31 True fake: scaffold gap size wrong estimation (local) 5263173 5266099 123213 126141 CM091766.1 scf7180000184262 99.45 True local misassembly 5266778 5267313 126804 127339 CM091766.1 scf7180000184262 99.44 True indel: indel (<= 5bp) 5267383 5267968 127411 127996 CM091766.1 scf7180000184262 99.32 True indel: indel (<= 5bp) 5268300 5268872 128324 128896 CM091766.1 scf7180000184262 99.83 True indel: indel (<= 5bp) 5269085 5269602 129105 129622 CM091766.1 scf7180000184262 99.42 True indel: indel (<= 5bp) 5269767 5270580 129784 130597 CM091766.1 scf7180000184262 100.0 True local misassembly 5271407 5272214 131417 132224 CM091766.1 scf7180000184262 99.13 True local misassembly 5273843 5274855 133801 134813 CM091766.1 scf7180000184262 98.91 True indel: indel (<= 5bp) 5274857 5275535 134814 135492 CM091766.1 scf7180000184262 99.41 True indel: indel (<= 5bp) 5275536 5276365 135494 136323 CM091766.1 scf7180000184262 99.16 True fake: scaffold gap size wrong estimation (local) 5276366 5277340 136739 137713 CM091766.1 scf7180000184262 99.28 True fake: scaffold gap size wrong estimation (local) 5278713 5280305 138753 140345 CM091766.1 scf7180000184262 99.37 True local misassembly 5281113 5283243 141156 143286 CM091766.1 scf7180000184262 98.92 True local misassembly 5284781 5285454 144353 145026 CM091766.1 scf7180000184262 98.52 True indel: indel (<= 5bp) 5285688 5286249 145262 145823 CM091766.1 scf7180000184262 99.29 True indel: indel (<= 5bp) 5286251 5286870 145824 146443 CM091766.1 scf7180000184262 99.19 True indel: indel (<= 5bp) 5286871 5287532 146445 147106 CM091766.1 scf7180000184262 100.0 True fake: scaffold gap size wrong estimation (local) 5288128 5364384 147710 223205 CM091766.1 scf7180000184262 96.84 True fake: scaffold gap size wrong estimation (local) 5364826 5453865 223706 311591 CM091766.1 scf7180000184262 97.4 True fake: scaffold gap size wrong estimation (local) 5454058 5505740 311743 362871 CM091766.1 scf7180000184262 98.26 True fake: scaffold gap size wrong estimation (local) 5505961 5515260 362912 372222 CM091766.1 scf7180000184262 99.41 True local misassembly 5515758 5559002 372554 415459 CM091766.1 scf7180000184262 98.43 True fake: scaffold gap size wrong estimation (local) 5559630 5580021 415873 435860 CM091766.1 scf7180000184262 96.89 True indel: indel (> 5bp) 5580079 5608126 435895 464076 CM091766.1 scf7180000184262 98.65 True fake: scaffold gap size wrong estimation (local) 5608566 5611988 464496 467918 CM091766.1 scf7180000184262 99.91 True local misassembly 5614157 5615012 469272 470127 CM091766.1 scf7180000184262 99.77 True fake: scaffold gap size wrong estimation (local) 5615618 5616191 470773 471346 CM091766.1 scf7180000184262 99.48 True indel: stretch of mismatches 5616640 5617295 471795 472450 CM091766.1 scf7180000184262 99.09 True indel: indel (<= 5bp) 5617296 5618254 472452 473410 CM091766.1 scf7180000184262 99.9 True local misassembly 5618630 5619965 473617 474952 CM091766.1 scf7180000184262 96.38 True fake: scaffold gap size wrong estimation (local) 5620107 5620855 475060 475815 CM091766.1 scf7180000184262 98.28 True fake: scaffold gap size wrong estimation (local) 5621266 5623809 475953 478404 CM091766.1 scf7180000184262 95.21 True indel: indel (> 5bp) 5624160 5624711 478767 479318 CM091766.1 scf7180000184262 100.0 True fake: scaffold gap size wrong estimation (local) 5625816 5626738 480279 481201 CM091766.1 scf7180000184262 99.35 True indel: indel (<= 5bp) 5626770 5628415 481229 482874 CM091766.1 scf7180000184262 99.88 True indel: indel (<= 5bp) 5628416 5629812 482876 484272 CM091766.1 scf7180000184262 99.57 True indel: indel (<= 5bp) 5630036 5630930 484498 485392 CM091766.1 scf7180000184262 99.55 True local misassembly 5633249 5634020 487172 487943 CM091766.1 scf7180000184262 99.48 True fake: scaffold gap size wrong estimation (local) 5634033 5635580 487985 489532 CM091766.1 scf7180000184262 99.74 True indel: indel (<= 5bp) 5635581 5636118 489535 490072 CM091766.1 scf7180000184262 99.44 True fake: scaffold gap size wrong estimation (local) 5639093 5674267 492774 527473 CM091766.1 scf7180000184262 95.54 True fake: scaffold gap size wrong estimation (local) 5675257 5685320 527975 537817 CM091766.1 scf7180000184262 96.78 True fake: scaffold gap size wrong estimation (local) 5685727 5697102 537936 549319 CM091766.1 scf7180000184262 99.12 True indel: indel (> 5bp) 5697153 5734873 549386 586440 CM091766.1 scf7180000184262 96.85 True fake: scaffold gap size wrong estimation (local) 5735119 5976211 586612 827698 CM091766.1 scf7180000184262 99.44 True fake: scaffold gap size wrong estimation (local) 5976613 6096026 827890 947437 CM091766.1 scf7180000184262 99.25 True local misassembly 6096181 6119151 947496 970587 CM091766.1 scf7180000184262 98.65 True fake: scaffold gap size wrong estimation (local) 6119495 6281786 971348 1133678 CM091766.1 scf7180000184262 99.28 True indel: indel (> 5bp) 6281822 6468997 1133732 1320039 CM091766.1 scf7180000184262 98.41 True indel: indel (> 5bp) 6469291 6522715 1320350 1373804 CM091766.1 scf7180000184262 98.08 True indel: indel (> 5bp) 6522864 6809391 1373870 1661520 CM091766.1 scf7180000184262 98.72 True indel: indel (> 5bp) 6809475 6932908 1661592 1785068 CM091766.1 scf7180000184262 98.94 True fake: scaffold gap size wrong estimation (local) 6933393 6981300 1785297 1833342 CM091766.1 scf7180000184262 99.12 True fake: scaffold gap size wrong estimation (local) 6982229 6983012 1833596 1834379 CM091766.1 scf7180000184262 99.62 True fake: scaffold gap size wrong estimation (local) 6983143 7151503 1834462 2002461 CM091766.1 scf7180000184262 99.17 True indel: indel (<= 5bp) 7151609 7186742 2002564 2037593 CM091766.1 scf7180000184262 98.87 True fake: scaffold gap size wrong estimation (local) 7187059 7266555 2037890 2117509 CM091766.1 scf7180000184262 99.31 True fake: scaffold gap size wrong estimation (local) 7266954 7363256 2117705 2213671 CM091766.1 scf7180000184262 99.05 True indel: indel (> 5bp) 7363395 7506639 2213797 2357266 CM091766.1 scf7180000184262 99.26 True fake: scaffold gap size wrong estimation (local) 7507462 7531857 2358356 2382442 CM091766.1 scf7180000184262 98.27 True fake: scaffold gap size wrong estimation (local) 7532102 7657752 2382567 2508291 CM091766.1 scf7180000184262 99.52 True indel: indel (> 5bp) 7657830 7894788 2508331 2745605 CM091766.1 scf7180000184262 99.34 True fake: scaffold gap size wrong estimation (local) 7895394 8081241 2745941 2931420 CM091766.1 scf7180000184262 99.44 True fake: scaffold gap size wrong estimation (local) 8081295 8203213 2931539 3053315 CM091766.1 scf7180000184262 99.48 True fake: scaffold gap size wrong estimation (local) 8204104 8205261 3054020 3055177 CM091766.1 scf7180000184262 99.74 True CONTIG scf7180000184262 3055177 correct 1952622 1982074 29474 25 CM091754.1 scf7180000184263 99.27 True indel: indel (> 5bp) 1951976 1952513 30152 29615 CM091754.1 scf7180000184263 98.88 True indel: indel (<= 5bp) 1949482 1951660 32648 30470 CM091754.1 scf7180000184263 99.91 True fake: scaffold gap size wrong estimation (local) 1942496 1943851 34117 32762 CM091754.1 scf7180000184263 99.34 True fake: scaffold gap size wrong estimation (local) 1940295 1941440 36289 35144 CM091754.1 scf7180000184263 99.39 True indel: stretch of mismatches 1939139 1940068 37445 36516 CM091754.1 scf7180000184263 99.68 True indel: indel (<= 5bp) 1935899 1939137 40684 37446 CM091754.1 scf7180000184263 100.0 True indel: indel (<= 5bp) 1933450 1935896 43131 40685 CM091754.1 scf7180000184263 99.96 True indel: indel (<= 5bp) 1932564 1933449 44018 43133 CM091754.1 scf7180000184263 99.89 True indel: indel (<= 5bp) 1931805 1932563 44778 44020 CM091754.1 scf7180000184263 99.34 True indel: indel (<= 5bp) 1927161 1931804 49423 44780 CM091754.1 scf7180000184263 99.87 True indel: indel (> 5bp) 1926351 1927150 50223 49424 CM091754.1 scf7180000184263 99.75 True indel: indel (> 5bp) 1924788 1926334 51770 50224 CM091754.1 scf7180000184263 99.48 True indel: indel (<= 5bp) 1923121 1924787 53440 51774 CM091754.1 scf7180000184263 99.52 True indel: indel (<= 5bp) 1921872 1923120 54690 53442 CM091754.1 scf7180000184263 99.76 True indel: indel (<= 5bp) 1919904 1921871 56659 54692 CM091754.1 scf7180000184263 99.95 True indel: indel (<= 5bp) 1919293 1919903 57271 56661 CM091754.1 scf7180000184263 100.0 True indel: indel (> 5bp) 1918594 1919116 57959 57437 CM091754.1 scf7180000184263 99.62 True indel: indel (<= 5bp) 1916819 1918592 59733 57960 CM091754.1 scf7180000184263 99.77 True local misassembly 1915705 1916292 60835 60248 CM091754.1 scf7180000184263 99.66 True indel: indel (<= 5bp) 1910673 1915703 65866 60836 CM091754.1 scf7180000184263 99.98 True indel: indel (<= 5bp) 1908868 1910672 67672 65868 CM091754.1 scf7180000184263 100.0 True indel: indel (<= 5bp) 1906789 1908867 69752 67674 CM091754.1 scf7180000184263 100.0 True indel: indel (<= 5bp) 1904090 1906788 72452 69754 CM091754.1 scf7180000184263 99.89 True indel: indel (<= 5bp) 1903482 1904089 73061 72454 CM091754.1 scf7180000184263 100.0 True fake: scaffold gap size wrong estimation (local) 1850524 1903368 126458 73644 CM091754.1 scf7180000184263 99.18 True fake: scaffold gap size wrong estimation (local) 1838429 1850372 138562 126620 CM091754.1 scf7180000184263 99.46 True indel: indel (> 5bp) 1762674 1838401 213567 138609 CM091754.1 scf7180000184263 97.98 True fake: scaffold gap size wrong estimation (local) 1753839 1762630 222415 213640 CM091754.1 scf7180000184263 99.06 True CONTIG scf7180000184263 222415 correct 3246456 3289094 1251 43935 CM091760.1 scf7180000184264 99.1 True fake: scaffold gap size wrong estimation (local) 3289258 3330867 44016 85541 CM091760.1 scf7180000184264 99.31 True fake: scaffold gap size wrong estimation (local) 3331445 3407307 85937 161900 CM091760.1 scf7180000184264 99.15 True fake: scaffold gap size wrong estimation (local) 3408197 3427377 162428 182122 CM091760.1 scf7180000184264 97.07 True fake: scaffold gap size wrong estimation (local) 3427961 3430010 182795 184836 CM091760.1 scf7180000184264 98.03 True fake: scaffold gap size wrong estimation (local) 3431556 3460015 185846 214319 CM091760.1 scf7180000184264 99.47 True fake: scaffold gap size wrong estimation (local) 3460636 3477549 214524 231508 CM091760.1 scf7180000184264 98.98 True fake: scaffold gap size wrong estimation (local) 3477784 3480167 231849 234228 CM091760.1 scf7180000184264 97.22 True fake: scaffold gap size wrong estimation (local) 3481564 3531764 235315 285288 CM091760.1 scf7180000184264 98.74 True indel: indel (> 5bp) 3531823 3610233 285365 363826 CM091760.1 scf7180000184264 99.3 True fake: scaffold gap size wrong estimation (local) 3610899 3621835 364470 375377 CM091760.1 scf7180000184264 99.08 True fake: scaffold gap size wrong estimation (local) 3621969 3646116 375454 399540 CM091760.1 scf7180000184264 98.66 True fake: scaffold gap size wrong estimation (local) 3646377 3685031 399634 438318 CM091760.1 scf7180000184264 99.5 True fake: scaffold gap size wrong estimation (local) 3685367 3700593 439133 454371 CM091760.1 scf7180000184264 99.38 True fake: scaffold gap size wrong estimation (local) 3700696 3715059 454821 469212 CM091760.1 scf7180000184264 99.43 True fake: scaffold gap size wrong estimation (local) 3715727 3716873 470259 471405 CM091760.1 scf7180000184264 99.13 True local misassembly 3721049 3723417 471406 473774 CM091760.1 scf7180000184264 98.78 True CONTIG scf7180000184264 476520 correct 9878291 9882637 1 4506 CM091756.1 scf7180000184265 96.59 True fake: scaffold gap size wrong estimation (local) 9883176 9886414 4848 8085 CM091756.1 scf7180000184265 98.98 True fake: scaffold gap size wrong estimation (local) 9887015 9892414 8682 14083 CM091756.1 scf7180000184265 99.72 True fake: scaffold gap size wrong estimation (local) 9899512 9900021 17432 17941 CM091756.1 scf7180000184265 97.84 True indel: stretch of mismatches 9900078 9900869 17998 18789 CM091756.1 scf7180000184265 98.99 True fake: scaffold gap size wrong estimation (local) 9901775 9902501 19227 19953 CM091756.1 scf7180000184265 96.97 True fake: scaffold gap size wrong estimation (local) 9902502 9903483 19979 20960 CM091756.1 scf7180000184265 97.76 True fake: scaffold gap size wrong estimation (local) 9904566 9908139 22066 25639 CM091756.1 scf7180000184265 99.44 True fake: scaffold gap size wrong estimation (local) 9908547 9909793 25698 26944 CM091756.1 scf7180000184265 99.92 True fake: scaffold gap size wrong estimation (local) 9911376 9914947 28731 32297 CM091756.1 scf7180000184265 98.8 True local misassembly 9910244 9911142 32318 33207 CM091756.1 scf7180000184265 98.11 True fake: scaffold gap size wrong estimation (local) 9916335 9917995 34790 36451 CM091756.1 scf7180000184265 99.7 True fake: scaffold gap size wrong estimation (local) 9919139 9919823 37180 37864 CM091756.1 scf7180000184265 99.56 True local misassembly 9920815 9921390 38869 39444 CM091756.1 scf7180000184265 99.83 True indel: indel (<= 5bp) 9921391 9922228 39446 40283 CM091756.1 scf7180000184265 99.88 True indel: indel (> 5bp) 9922272 9924583 40303 42614 CM091756.1 scf7180000184265 99.74 True local misassembly 9925318 9926913 43346 44941 CM091756.1 scf7180000184265 99.5 True indel: indel (<= 5bp) 9926918 9927709 44942 45733 CM091756.1 scf7180000184265 96.84 True indel: indel (> 5bp) 9927725 9928315 45734 46324 CM091756.1 scf7180000184265 99.83 True indel: indel (<= 5bp) 9928316 9929262 46327 47273 CM091756.1 scf7180000184265 99.68 True fake: scaffold gap size wrong estimation (local) 9929826 9932756 47813 50743 CM091756.1 scf7180000184265 99.39 True local misassembly 9936341 9937645 50744 52048 CM091756.1 scf7180000184265 99.46 True local misassembly 9938092 9938848 52586 53342 CM091756.1 scf7180000184265 99.87 True indel: indel (<= 5bp) 9938877 9940156 53367 54646 CM091756.1 scf7180000184265 99.53 True indel: indel (<= 5bp) 9940159 9944237 54647 58725 CM091756.1 scf7180000184265 99.63 True indel: indel (> 5bp) 9944238 9945638 58736 60136 CM091756.1 scf7180000184265 99.71 True indel: indel (<= 5bp) 9945639 9946869 60138 61368 CM091756.1 scf7180000184265 99.84 True indel: indel (<= 5bp) 9946871 9947703 61369 62201 CM091756.1 scf7180000184265 99.52 True indel: indel (<= 5bp) 9947705 9951117 62202 65614 CM091756.1 scf7180000184265 99.38 True fake: scaffold gap size wrong estimation (local) 9951482 9952243 65984 66745 CM091756.1 scf7180000184265 99.61 True indel: indel (<= 5bp) 9952245 9953512 66746 68013 CM091756.1 scf7180000184265 99.76 True indel: indel (> 5bp) 9953889 9956162 68400 70673 CM091756.1 scf7180000184265 99.25 True fake: scaffold gap size wrong estimation (local) 9956479 9957258 71239 72018 CM091756.1 scf7180000184265 100.0 True indel: indel (> 5bp) 9957712 9958743 72489 73520 CM091756.1 scf7180000184265 99.81 True fake: scaffold gap size wrong estimation (local) 9959277 9959850 74079 74652 CM091756.1 scf7180000184265 99.48 True indel: indel (<= 5bp) 9959983 9960640 74787 75444 CM091756.1 scf7180000184265 99.09 True indel: indel (<= 5bp) 9960641 9961372 75446 76177 CM091756.1 scf7180000184265 99.45 True local misassembly 9962247 9963363 77053 78169 CM091756.1 scf7180000184265 99.37 True indel: indel (<= 5bp) 9963365 9964661 78170 79466 CM091756.1 scf7180000184265 99.54 True local misassembly 9965406 9967013 80214 81821 CM091756.1 scf7180000184265 99.63 True indel: indel (<= 5bp) 9967016 9968942 81822 83748 CM091756.1 scf7180000184265 99.64 True indel: indel (<= 5bp) 9968943 9969633 83750 84440 CM091756.1 scf7180000184265 99.42 True fake: scaffold gap size wrong estimation (local) 9971813 9973227 86242 87656 CM091756.1 scf7180000184265 99.93 True local misassembly 9973978 9975425 88404 89851 CM091756.1 scf7180000184265 99.45 True fake: scaffold gap size wrong estimation (local) 9978097 9979199 92165 93267 CM091756.1 scf7180000184265 99.64 True local misassembly 9979853 9980405 93970 94522 CM091756.1 scf7180000184265 99.64 True indel: indel (<= 5bp) 9980406 9981744 94524 95862 CM091756.1 scf7180000184265 99.63 True indel: indel (> 5bp) 9981829 9982333 95978 96482 CM091756.1 scf7180000184265 99.8 True indel: indel (<= 5bp) 9982487 9983759 96637 97909 CM091756.1 scf7180000184265 99.69 True indel: indel (<= 5bp) 9983760 9984718 97913 98871 CM091756.1 scf7180000184265 99.27 True fake: scaffold gap size wrong estimation (local) 9985977 9986674 99567 100264 CM091756.1 scf7180000184265 96.99 True fake: scaffold gap size wrong estimation (local) 9987592 9988744 101238 102390 CM091756.1 scf7180000184265 99.13 True local misassembly 9989858 9990818 103505 104465 CM091756.1 scf7180000184265 99.79 True indel: indel (<= 5bp) 9991304 9992559 104955 106210 CM091756.1 scf7180000184265 99.6 True local misassembly 9993048 9994905 106211 108068 CM091756.1 scf7180000184265 99.52 True indel: indel (<= 5bp) 9994906 9995481 108070 108645 CM091756.1 scf7180000184265 99.65 True indel: indel (<= 5bp) 9995482 9996869 108647 110034 CM091756.1 scf7180000184265 98.99 True indel: indel (<= 5bp) 9996870 9997635 110036 110801 CM091756.1 scf7180000184265 99.61 True fake: scaffold gap size wrong estimation (local) 9997820 10009722 110931 122589 CM091756.1 scf7180000184265 96.37 True fake: scaffold gap size wrong estimation (local) 10011856 10013419 124528 126091 CM091756.1 scf7180000184265 99.3 True fake: scaffold gap size wrong estimation (local) 10014797 10016288 127496 128987 CM091756.1 scf7180000184265 99.73 True indel: indel (<= 5bp) 10016289 10017344 128992 130047 CM091756.1 scf7180000184265 100.0 True indel: indel (<= 5bp) 10017345 10017947 130049 130651 CM091756.1 scf7180000184265 99.83 True indel: stretch of mismatches 10018389 10018988 131093 131692 CM091756.1 scf7180000184265 99.67 True indel: indel (<= 5bp) 10019455 10020449 132162 133156 CM091756.1 scf7180000184265 99.6 True local misassembly 10021037 10022311 133726 135000 CM091756.1 scf7180000184265 99.84 True local misassembly 10022830 10023330 135531 136031 CM091756.1 scf7180000184265 98.8 True indel: indel (<= 5bp) 10023332 10024085 136032 136785 CM091756.1 scf7180000184265 99.6 True local misassembly 10024733 10025406 137414 138087 CM091756.1 scf7180000184265 99.55 True local misassembly 10026912 10027576 139598 140262 CM091756.1 scf7180000184265 99.7 True local misassembly 10028071 10028931 140496 141356 CM091756.1 scf7180000184265 99.65 True indel: indel (<= 5bp) 10029396 10030191 141819 142614 CM091756.1 scf7180000184265 99.12 True fake: scaffold gap size wrong estimation (local) 10031609 10033082 143794 145267 CM091756.1 scf7180000184265 99.59 True local misassembly 10035667 10036558 147864 148755 CM091756.1 scf7180000184265 99.66 True indel: indel (<= 5bp) 10036560 10037121 148756 149317 CM091756.1 scf7180000184265 99.64 True indel: indel (<= 5bp) 10037396 10038283 149591 150478 CM091756.1 scf7180000184265 99.44 True local misassembly 10039484 10040713 150827 152056 CM091756.1 scf7180000184265 99.35 True indel: indel (> 5bp) 10040720 10042223 152057 153560 CM091756.1 scf7180000184265 99.0 True indel: indel (<= 5bp) 10042226 10042812 153561 154147 CM091756.1 scf7180000184265 98.98 True fake: scaffold gap size wrong estimation (local) 10042926 10152287 154402 263543 CM091756.1 scf7180000184265 99.11 True indel: indel (> 5bp) 10152318 10153611 263591 264886 CM091756.1 scf7180000184265 99.77 True fake: scaffold gap size wrong estimation (local) 10153943 10213202 265010 323873 CM091756.1 scf7180000184265 98.22 True fake: scaffold gap size wrong estimation (local) 10214235 10215124 324883 325772 CM091756.1 scf7180000184265 99.78 True indel: indel (<= 5bp) 10215125 10216357 325775 327007 CM091756.1 scf7180000184265 99.68 True indel: indel (> 5bp) 10216391 10217165 327047 327821 CM091756.1 scf7180000184265 99.1 True indel: indel (<= 5bp) 10217167 10217832 327822 328487 CM091756.1 scf7180000184265 99.55 True indel: indel (<= 5bp) 10217834 10218798 328488 329452 CM091756.1 scf7180000184265 99.38 True indel: indel (<= 5bp) 10219085 10220137 329741 330793 CM091756.1 scf7180000184265 100.0 True indel: indel (<= 5bp) 10220139 10220824 330794 331479 CM091756.1 scf7180000184265 99.42 True indel: indel (<= 5bp) 10220825 10222438 331481 333094 CM091756.1 scf7180000184265 99.57 True indel: indel (<= 5bp) 10222741 10223852 333399 334510 CM091756.1 scf7180000184265 98.65 True indel: indel (> 5bp) 10224309 10225119 334978 335788 CM091756.1 scf7180000184265 99.01 True local misassembly 10226173 10227400 336843 338070 CM091756.1 scf7180000184265 99.19 True local misassembly 10229191 10230043 339186 340038 CM091756.1 scf7180000184265 100.0 True local misassembly 10230842 10231930 340854 341942 CM091756.1 scf7180000184265 99.72 True indel: indel (<= 5bp) 10231931 10233351 341944 343364 CM091756.1 scf7180000184265 99.65 True indel: indel (> 5bp) 10233714 10234409 343738 344433 CM091756.1 scf7180000184265 99.43 True indel: indel (> 5bp) 10234827 10238608 344858 348639 CM091756.1 scf7180000184265 99.37 True local misassembly 10239210 10241273 349243 351306 CM091756.1 scf7180000184265 99.66 True indel: indel (<= 5bp) 10241274 10242454 351309 352489 CM091756.1 scf7180000184265 98.81 True indel: indel (> 5bp) 10242906 10244053 352928 354075 CM091756.1 scf7180000184265 99.04 True indel: indel (> 5bp) 10244361 10245472 354355 355466 CM091756.1 scf7180000184265 99.1 True indel: indel (<= 5bp) 10245473 10246109 355470 356106 CM091756.1 scf7180000184265 99.69 True indel: indel (<= 5bp) 10246110 10246640 356108 356638 CM091756.1 scf7180000184265 99.44 True fake: scaffold gap size wrong estimation (local) 10247586 10248767 357586 358767 CM091756.1 scf7180000184265 97.8 True indel: indel (<= 5bp) 10248986 10252144 358983 362141 CM091756.1 scf7180000184265 99.37 True local misassembly 10252764 10255086 362751 365073 CM091756.1 scf7180000184265 98.92 True indel: indel (<= 5bp) 10255087 10256342 365079 366334 CM091756.1 scf7180000184265 99.52 True indel: indel (> 5bp) 10256350 10256963 366335 366948 CM091756.1 scf7180000184265 99.67 True local misassembly 10261417 10262226 367379 368188 CM091756.1 scf7180000184265 99.14 True indel: indel (<= 5bp) 10262238 10262899 368204 368865 CM091756.1 scf7180000184265 99.55 True local misassembly 10263950 10264482 369933 370465 CM091756.1 scf7180000184265 99.81 True indel: indel (<= 5bp) 10264484 10265525 370466 371507 CM091756.1 scf7180000184265 100.0 True indel: indel (> 5bp) 10265850 10266422 371841 372413 CM091756.1 scf7180000184265 99.65 True indel: indel (<= 5bp) 10266489 10268931 372478 374920 CM091756.1 scf7180000184265 99.35 True indel: indel (> 5bp) 10268932 10269838 374931 375837 CM091756.1 scf7180000184265 99.01 True indel: indel (<= 5bp) 10269840 10270577 375838 376575 CM091756.1 scf7180000184265 99.86 True indel: indel (> 5bp) 10270792 10274162 376762 380109 CM091756.1 scf7180000184265 98.49 True fake: scaffold gap size wrong estimation (local) 10274543 10277474 380214 383115 CM091756.1 scf7180000184265 98.4 True fake: scaffold gap size wrong estimation (local) 10277575 10315956 383204 421471 CM091756.1 scf7180000184265 98.86 True fake: scaffold gap size wrong estimation (local) 10316087 10398750 421553 503856 CM091756.1 scf7180000184265 98.23 True indel: indel (> 5bp) 10398859 10399626 503986 504755 CM091756.1 scf7180000184265 99.48 True relocation, scaffold gap is present, inconsistency = 62980 10463731 10476223 505880 518353 CM091756.1 scf7180000184265 99.1 True indel: indel (> 5bp) 10476283 10478186 518420 520317 CM091756.1 scf7180000184265 98.85 True indel: indel (> 5bp) 10478502 10527376 520686 568744 CM091756.1 scf7180000184265 97.21 True fake: scaffold gap size wrong estimation (local) 10528142 10533916 569094 574871 CM091756.1 scf7180000184265 99.1 True fake: scaffold gap size wrong estimation (local) 10534808 10538110 575263 578571 CM091756.1 scf7180000184265 98.43 True CONTIG scf7180000184265 578572 misassembled 13459924 13462036 1 2116 CM091759.1 scf7180000184266 99.62 True translocation 2800957 2801744 2485 3272 CM091768.1 scf7180000184266 99.49 True local misassembly 2802951 2805643 3674 6366 CM091768.1 scf7180000184266 99.52 True indel: indel (<= 5bp) 2805645 2806153 6367 6875 CM091768.1 scf7180000184266 99.61 True indel: indel (<= 5bp) 2806578 2807378 7295 8095 CM091768.1 scf7180000184266 99.88 True fake: scaffold gap size wrong estimation (local) 2809113 2810096 9904 10887 CM091768.1 scf7180000184266 99.7 True indel: stretch of mismatches 2810278 2812011 11069 12802 CM091768.1 scf7180000184266 99.42 True local misassembly 2813026 2814802 12803 14579 CM091768.1 scf7180000184266 99.38 True fake: scaffold gap size wrong estimation (local) 2817449 2819199 17002 18752 CM091768.1 scf7180000184266 99.54 True fake: scaffold gap size wrong estimation (local) 2822690 2823369 20440 21119 CM091768.1 scf7180000184266 99.12 True indel: indel (<= 5bp) 2823370 2823966 21121 21717 CM091768.1 scf7180000184266 99.5 True local misassembly 2824827 2825932 22332 23437 CM091768.1 scf7180000184266 99.19 True indel: indel (> 5bp) 2826152 2826718 23649 24215 CM091768.1 scf7180000184266 98.94 True fake: scaffold gap size wrong estimation (local) 2827259 2828603 24596 25940 CM091768.1 scf7180000184266 99.78 True local misassembly 2829514 2830184 26698 27368 CM091768.1 scf7180000184266 98.66 True local misassembly 2830672 2831830 27675 28833 CM091768.1 scf7180000184266 99.83 True indel: indel (<= 5bp) 2831974 2834130 28976 31132 CM091768.1 scf7180000184266 99.54 True indel: indel (<= 5bp) 2834131 2834939 31134 31942 CM091768.1 scf7180000184266 98.89 True fake: scaffold gap size wrong estimation (local) 2835172 2842311 32047 39244 CM091768.1 scf7180000184266 98.26 True fake: scaffold gap size wrong estimation (local) 2843986 2847022 40436 43494 CM091768.1 scf7180000184266 97.71 True local misassembly 2848781 2850017 43857 45093 CM091768.1 scf7180000184266 99.27 True indel: indel (> 5bp) 2850095 2852714 45157 47776 CM091768.1 scf7180000184266 99.5 True fake: scaffold gap size wrong estimation (local) 2855546 2856059 48741 49254 CM091768.1 scf7180000184266 99.42 True indel: indel (> 5bp) 2856230 2857329 49415 50514 CM091768.1 scf7180000184266 98.55 True local misassembly 2858085 2859512 51279 52706 CM091768.1 scf7180000184266 99.16 True local misassembly 2860518 2861040 52828 53350 CM091768.1 scf7180000184266 99.43 True indel: indel (> 5bp) 2861041 2862934 53360 55253 CM091768.1 scf7180000184266 99.37 True local misassembly 2864397 2867870 55850 59323 CM091768.1 scf7180000184266 99.68 True indel: indel (> 5bp) 2868117 2870885 59532 62300 CM091768.1 scf7180000184266 99.78 True local misassembly 2871439 2872148 62863 63572 CM091768.1 scf7180000184266 99.3 True indel: indel (> 5bp) 2872225 2873118 63618 64511 CM091768.1 scf7180000184266 98.99 True local misassembly 2874047 2875014 64881 65848 CM091768.1 scf7180000184266 99.59 True indel: indel (<= 5bp) 2875146 2877268 65977 68099 CM091768.1 scf7180000184266 99.95 True indel: indel (<= 5bp) 2877269 2884553 68101 75385 CM091768.1 scf7180000184266 99.7 True indel: indel (<= 5bp) 2884556 2885883 75386 76713 CM091768.1 scf7180000184266 99.25 True fake: scaffold gap size wrong estimation (local) 2886198 2910374 76939 101112 CM091768.1 scf7180000184266 99.34 True fake: scaffold gap size wrong estimation (local) 2912365 2913423 102640 103698 CM091768.1 scf7180000184266 98.02 True indel: indel (> 5bp) 2913504 2914364 103699 104559 CM091768.1 scf7180000184266 97.33 True fake: scaffold gap size wrong estimation (local) 2916371 2916922 106255 106806 CM091768.1 scf7180000184266 99.64 True fake: scaffold gap size wrong estimation (local) 2918695 2919715 107820 108841 CM091768.1 scf7180000184266 99.71 True fake: scaffold gap size wrong estimation (local) 2921968 2923388 110099 111523 CM091768.1 scf7180000184266 98.25 True fake: scaffold gap size wrong estimation (local) 2925569 2929432 113770 117641 CM091768.1 scf7180000184266 98.92 True relocation, scaffold gap is present, inconsistency = -15850 2913603 2915097 117662 119155 CM091768.1 scf7180000184266 99.0 True fake: scaffold gap size wrong estimation (local) 2917105 2919062 121310 123283 CM091768.1 scf7180000184266 97.47 True relocation, scaffold gap is present, inconsistency = 14751 2934610 2941898 124080 131282 CM091768.1 scf7180000184266 97.52 True CONTIG scf7180000184266 131288 misassembled 10905271 10905784 4258 3745 CM091766.1 scf7180000184267 96.69 True indel: indel (> 5bp) 10835968 10904826 73412 4711 CM091766.1 scf7180000184267 99.33 True CONTIG scf7180000184267 73413 correct 10637180 10662456 25514 661 CM091755.1 scf7180000184268 97.33 True fake: scaffold gap size wrong estimation (local) 10635551 10636976 27099 25674 CM091755.1 scf7180000184268 99.79 True indel: indel (<= 5bp) 10631938 10635174 30711 27475 CM091755.1 scf7180000184268 99.57 True indel: indel (<= 5bp) 10630185 10631937 32465 30713 CM091755.1 scf7180000184268 99.71 True indel: indel (<= 5bp) 10629458 10630119 33194 32533 CM091755.1 scf7180000184268 96.83 True indel: indel (<= 5bp) 10628784 10629455 33866 33195 CM091755.1 scf7180000184268 100.0 True indel: indel (> 5bp) 10628085 10628690 34551 33946 CM091755.1 scf7180000184268 100.0 True indel: indel (<= 5bp) 10627181 10627705 35452 34928 CM091755.1 scf7180000184268 100.0 True indel: indel (<= 5bp) 10625543 10627180 37092 35455 CM091755.1 scf7180000184268 99.82 True indel: indel (<= 5bp) 10624838 10625532 37799 37105 CM091755.1 scf7180000184268 99.28 True fake: scaffold gap size wrong estimation (local) 10624077 10624675 38500 37902 CM091755.1 scf7180000184268 99.17 True indel: indel (> 5bp) 10623093 10623623 39474 38944 CM091755.1 scf7180000184268 100.0 True indel: indel (<= 5bp) 10620660 10622955 41910 39615 CM091755.1 scf7180000184268 98.3 True fake: scaffold gap size wrong estimation (local) 10614429 10619180 47168 42421 CM091755.1 scf7180000184268 98.76 True relocation, inconsistency = 2095576 8515190 8518852 47169 50824 CM091755.1 scf7180000184268 99.29 True fake: scaffold gap size wrong estimation (local) 8519094 8535513 51020 67488 CM091755.1 scf7180000184268 98.74 True fake: scaffold gap size wrong estimation (local) 8535749 8575616 67638 107372 CM091755.1 scf7180000184268 98.09 True fake: scaffold gap size wrong estimation (local) 8576265 8582188 108049 113957 CM091755.1 scf7180000184268 99.04 True fake: scaffold gap size wrong estimation (local) 8582731 8766161 114397 297446 CM091755.1 scf7180000184268 99.31 True fake: scaffold gap size wrong estimation (local) 8766327 8786135 297544 317284 CM091755.1 scf7180000184268 98.68 True fake: scaffold gap size wrong estimation (local) 8786460 8787445 317632 318617 CM091755.1 scf7180000184268 99.39 True fake: scaffold gap size wrong estimation (local) 8788358 8789263 319176 320081 CM091755.1 scf7180000184268 99.12 True indel: indel (<= 5bp) 8789264 8789768 320083 320587 CM091755.1 scf7180000184268 99.01 True indel: indel (> 5bp) 8789792 8790428 320605 321241 CM091755.1 scf7180000184268 95.29 True indel: indel (<= 5bp) 8790429 8791078 321243 321892 CM091755.1 scf7180000184268 99.38 True local misassembly 8791375 8792205 321893 322723 CM091755.1 scf7180000184268 97.59 True indel: indel (<= 5bp) 8792305 8793368 322825 323888 CM091755.1 scf7180000184268 99.91 True indel: indel (> 5bp) 8793707 8795517 324208 326018 CM091755.1 scf7180000184268 97.74 True fake: scaffold gap size wrong estimation (local) 8796461 8799719 326562 329820 CM091755.1 scf7180000184268 99.72 True fake: scaffold gap size wrong estimation (local) 8799720 8801074 329838 331192 CM091755.1 scf7180000184268 99.41 True indel: indel (> 5bp) 8801127 8805056 331253 335182 CM091755.1 scf7180000184268 99.52 True indel: indel (> 5bp) 8805100 8805784 335183 335867 CM091755.1 scf7180000184268 98.1 True indel: indel (<= 5bp) 8805785 8806462 335871 336548 CM091755.1 scf7180000184268 99.85 True indel: indel (> 5bp) 8806469 8807639 336549 337719 CM091755.1 scf7180000184268 97.01 True indel: indel (> 5bp) 8807808 8816052 337870 345915 CM091755.1 scf7180000184268 96.88 True fake: scaffold gap size wrong estimation (local) 8816559 8832424 346267 361951 CM091755.1 scf7180000184268 97.54 True fake: scaffold gap size wrong estimation (local) 8833215 8849668 362222 378472 CM091755.1 scf7180000184268 98.05 True fake: scaffold gap size wrong estimation (local) 8849756 8863057 378532 391740 CM091755.1 scf7180000184268 98.56 True fake: scaffold gap size wrong estimation (local) 8863566 8871090 392122 399587 CM091755.1 scf7180000184268 98.24 True fake: scaffold gap size wrong estimation (local) 8871280 8872200 399757 400677 CM091755.1 scf7180000184268 99.46 True indel: indel (> 5bp) 8872201 8872841 400698 401338 CM091755.1 scf7180000184268 99.69 True indel: indel (> 5bp) 8872879 8875696 401339 404156 CM091755.1 scf7180000184268 99.47 True fake: scaffold gap size wrong estimation (local) 8876809 8879248 405277 407716 CM091755.1 scf7180000184268 99.55 True indel: indel (<= 5bp) 8879249 8879792 407719 408262 CM091755.1 scf7180000184268 99.63 True relocation, scaffold gap is present, inconsistency = 19645 8901330 8916490 410155 424951 CM091755.1 scf7180000184268 96.69 True local misassembly 8916910 8945928 425098 453792 CM091755.1 scf7180000184268 97.8 True fake: scaffold gap size wrong estimation (local) 8946813 8947712 454640 455539 CM091755.1 scf7180000184268 99.22 True local misassembly 8948655 8949206 456483 457034 CM091755.1 scf7180000184268 99.64 True local misassembly 8950645 8951306 458467 459128 CM091755.1 scf7180000184268 99.85 True fake: scaffold gap size wrong estimation (local) 8954109 8954810 461689 462390 CM091755.1 scf7180000184268 99.72 True indel: indel (<= 5bp) 8954811 8955593 462392 463174 CM091755.1 scf7180000184268 99.62 True indel: indel (<= 5bp) 8955594 8956649 463176 464231 CM091755.1 scf7180000184268 99.43 True indel: indel (<= 5bp) 8956803 8957377 464384 464958 CM091755.1 scf7180000184268 99.83 True fake: scaffold gap size wrong estimation (local) 8958531 8959354 465821 466644 CM091755.1 scf7180000184268 99.39 True fake: scaffold gap size wrong estimation (local) 8959789 8961429 466982 468625 CM091755.1 scf7180000184268 98.6 True fake: scaffold gap size wrong estimation (local) 8961569 8968745 468751 476230 CM091755.1 scf7180000184268 95.48 True indel: indel (> 5bp) 8968769 8986945 476268 494244 CM091755.1 scf7180000184268 97.83 True fake: scaffold gap size wrong estimation (local) 8987692 9000053 494877 507094 CM091755.1 scf7180000184268 97.79 True fake: scaffold gap size wrong estimation (local) 9000454 9004131 507169 510847 CM091755.1 scf7180000184268 99.24 True fake: scaffold gap size wrong estimation (local) 9004313 9008996 510868 515568 CM091755.1 scf7180000184268 98.51 True fake: scaffold gap size wrong estimation (local) 9009243 9013520 515804 520083 CM091755.1 scf7180000184268 99.35 True fake: scaffold gap size wrong estimation (local) 9014290 9046806 520527 552055 CM091755.1 scf7180000184268 95.1 True fake: scaffold gap size wrong estimation (local) 9046998 9064427 552142 569645 CM091755.1 scf7180000184268 98.69 True fake: scaffold gap size wrong estimation (local) 9064579 9069615 569783 574837 CM091755.1 scf7180000184268 99.21 True indel: indel (> 5bp) 9069746 9071653 574974 576898 CM091755.1 scf7180000184268 99.63 True fake: scaffold gap size wrong estimation (local) 9072224 9083804 577030 588649 CM091755.1 scf7180000184268 98.92 True fake: scaffold gap size wrong estimation (local) 9084451 9107241 588881 611710 CM091755.1 scf7180000184268 99.54 True fake: scaffold gap size wrong estimation (local) 9107523 9108562 611915 612945 CM091755.1 scf7180000184268 98.52 True fake: scaffold gap size wrong estimation (local) 9109420 9146454 613376 650303 CM091755.1 scf7180000184268 99.42 True fake: scaffold gap size wrong estimation (local) 9147127 9154944 650657 658473 CM091755.1 scf7180000184268 99.95 True relocation, inconsistency = 16241 9171186 9188714 658474 676008 CM091755.1 scf7180000184268 99.65 True relocation, scaffold gap is present, inconsistency = -60524 9223569 9244795 771387 792632 CM091755.1 scf7180000184268 99.59 True relocation, scaffold gap is present, inconsistency = -131021 9244896 9263885 942731 923754 CM091755.1 scf7180000184268 99.88 True relocation, inconsistency = 20179 9284065 9289582 942732 948137 CM091755.1 scf7180000184268 99.76 True fake: scaffold gap size wrong estimation (local) 9289751 9334644 948274 993180 CM091755.1 scf7180000184268 99.87 True indel: indel (> 5bp) 9334679 9424387 993226 1082699 CM091755.1 scf7180000184268 99.06 True fake: scaffold gap size wrong estimation (local) 9424838 9477906 1083105 1135879 CM091755.1 scf7180000184268 98.27 True fake: scaffold gap size wrong estimation (local) 9478038 9494267 1136011 1151663 CM091755.1 scf7180000184268 95.11 True fake: scaffold gap size wrong estimation (local) 9494811 9500108 1151819 1156982 CM091755.1 scf7180000184268 96.66 True local misassembly 9500627 9503135 1157035 1159591 CM091755.1 scf7180000184268 96.53 True fake: scaffold gap size wrong estimation (local) 9503693 9509709 1159953 1165967 CM091755.1 scf7180000184268 99.15 True fake: scaffold gap size wrong estimation (local) 9510023 9510816 1166311 1167104 CM091755.1 scf7180000184268 99.5 True fake: scaffold gap size wrong estimation (local) 9513296 9513819 1170059 1170582 CM091755.1 scf7180000184268 99.81 True indel: indel (> 5bp) 9514124 9515426 1170896 1172198 CM091755.1 scf7180000184268 99.62 True indel: indel (<= 5bp) 9515428 9516495 1172199 1173266 CM091755.1 scf7180000184268 99.44 True indel: indel (<= 5bp) 9516496 9517166 1173268 1173938 CM091755.1 scf7180000184268 99.7 True indel: indel (<= 5bp) 9517392 9519019 1174163 1175790 CM091755.1 scf7180000184268 99.63 True fake: scaffold gap size wrong estimation (local) 9519195 9521871 1175938 1178620 CM091755.1 scf7180000184268 98.66 True fake: scaffold gap size wrong estimation (local) 9522318 9535796 1178767 1192488 CM091755.1 scf7180000184268 97.48 True fake: scaffold gap size wrong estimation (local) 9537277 9547807 1193895 1204437 CM091755.1 scf7180000184268 98.94 True fake: scaffold gap size wrong estimation (local) 9548138 9549274 1205206 1206342 CM091755.1 scf7180000184268 99.91 True local misassembly 9550551 9551358 1207624 1208431 CM091755.1 scf7180000184268 99.75 True indel: indel (<= 5bp) 9551551 9554242 1208628 1211319 CM091755.1 scf7180000184268 99.48 True indel: indel (<= 5bp) 9554526 9555120 1211608 1212202 CM091755.1 scf7180000184268 98.82 True local misassembly 9555948 9556604 1213030 1213686 CM091755.1 scf7180000184268 99.7 True local misassembly 9557104 9558410 1214052 1215358 CM091755.1 scf7180000184268 99.31 True indel: indel (> 5bp) 9558691 9560039 1215652 1217000 CM091755.1 scf7180000184268 99.56 True local misassembly 9560403 9562415 1217161 1219173 CM091755.1 scf7180000184268 99.45 True fake: scaffold gap size wrong estimation (local) 9562476 9563406 1219267 1220197 CM091755.1 scf7180000184268 99.57 True fake: scaffold gap size wrong estimation (local) 9563517 9564273 1220332 1221088 CM091755.1 scf7180000184268 99.47 True indel: indel (<= 5bp) 9564279 9565005 1221089 1221815 CM091755.1 scf7180000184268 95.46 True indel: indel (> 5bp) 9565115 9565945 1221913 1222743 CM091755.1 scf7180000184268 99.4 True local misassembly 9567316 9568465 1223964 1225113 CM091755.1 scf7180000184268 99.74 True indel: stretch of mismatches 9568509 9569267 1225157 1225915 CM091755.1 scf7180000184268 99.74 True indel: indel (<= 5bp) 9569268 9569979 1225918 1226629 CM091755.1 scf7180000184268 99.86 True local misassembly 9572870 9574096 1227348 1228574 CM091755.1 scf7180000184268 99.51 True indel: indel (<= 5bp) 9574235 9574734 1228708 1229207 CM091755.1 scf7180000184268 99.8 True local misassembly 9576641 9577746 1230694 1231799 CM091755.1 scf7180000184268 99.73 True indel: indel (<= 5bp) 9577747 9579044 1231801 1233098 CM091755.1 scf7180000184268 99.61 True indel: indel (> 5bp) 9579250 9593207 1233322 1247278 CM091755.1 scf7180000184268 99.42 True indel: indel (<= 5bp) 9593258 9723055 1247327 1376791 CM091755.1 scf7180000184268 99.3 True fake: not a misassembly (possible transposable element) 600610 601872 1376875 1378130 CM091753.1 scf7180000184268 99.48 True fake: not a misassembly (possible transposable element) 9723012 9798660 1378131 1453341 CM091755.1 scf7180000184268 99.13 True indel: indel (> 5bp) 9798741 9842052 1453437 1496386 CM091755.1 scf7180000184268 98.77 True fake: scaffold gap size wrong estimation (local) 9842817 9843549 1496735 1497467 CM091755.1 scf7180000184268 99.73 True indel: indel (<= 5bp) 9843921 9844840 1497842 1498761 CM091755.1 scf7180000184268 99.67 True indel: indel (<= 5bp) 9844855 9845504 1498778 1499427 CM091755.1 scf7180000184268 99.54 True local misassembly 9847094 9847859 1501023 1501788 CM091755.1 scf7180000184268 99.74 True fake: scaffold gap size wrong estimation (local) 9848388 9849032 1501988 1502632 CM091755.1 scf7180000184268 98.91 True fake: scaffold gap size wrong estimation (local) 9849256 9870758 1502856 1524379 CM091755.1 scf7180000184268 98.27 True indel: indel (<= 5bp) 9870817 9956476 1524442 1609539 CM091755.1 scf7180000184268 98.36 True fake: scaffold gap size wrong estimation (local) 9956679 9958946 1609714 1611982 CM091755.1 scf7180000184268 99.6 True fake: scaffold gap size wrong estimation (local) 9960097 9969725 1613381 1623050 CM091755.1 scf7180000184268 98.57 True local misassembly 9970633 9971476 1623583 1624426 CM091755.1 scf7180000184268 99.53 True fake: scaffold gap size wrong estimation (local) 9972782 9973398 1625475 1626091 CM091755.1 scf7180000184268 99.51 True local misassembly 9974855 9977021 1627543 1629709 CM091755.1 scf7180000184268 99.86 True fake: scaffold gap size wrong estimation (local) 9977509 9979811 1630729 1633031 CM091755.1 scf7180000184268 99.09 True fake: scaffold gap size wrong estimation (local) 9981635 9982910 1634728 1636003 CM091755.1 scf7180000184268 99.45 True indel: indel (<= 5bp) 9982943 9983972 1636039 1637068 CM091755.1 scf7180000184268 99.32 True indel: indel (> 5bp) 9984064 9985727 1637172 1638835 CM091755.1 scf7180000184268 99.52 True fake: scaffold gap size wrong estimation (local) 9986190 9988284 1639338 1641432 CM091755.1 scf7180000184268 99.24 True local misassembly 9988412 9989342 1641433 1642363 CM091755.1 scf7180000184268 99.03 True local misassembly 9990467 9991990 1643538 1645061 CM091755.1 scf7180000184268 99.61 True local misassembly 9992799 9993325 1645852 1646378 CM091755.1 scf7180000184268 98.1 True local misassembly 9994128 9994849 1647194 1647915 CM091755.1 scf7180000184268 99.72 True indel: indel (<= 5bp) 9994851 9995354 1647916 1648419 CM091755.1 scf7180000184268 99.4 True local misassembly 9995957 9996490 1648652 1649185 CM091755.1 scf7180000184268 99.06 True indel: indel (<= 5bp) 9996495 9998433 1649186 1651124 CM091755.1 scf7180000184268 99.69 True fake: scaffold gap size wrong estimation (local) 10000542 10001341 1653103 1653902 CM091755.1 scf7180000184268 97.38 True fake: scaffold gap size wrong estimation (local) 10001342 10001924 1653933 1654515 CM091755.1 scf7180000184268 98.46 True indel: indel (<= 5bp) 10001925 10002776 1654517 1655368 CM091755.1 scf7180000184268 99.77 True local misassembly 10003405 10004028 1655999 1656622 CM091755.1 scf7180000184268 99.84 True local misassembly 10005719 10006352 1658005 1658638 CM091755.1 scf7180000184268 99.68 True fake: scaffold gap size wrong estimation (local) 10007161 10021201 1659397 1673332 CM091755.1 scf7180000184268 97.08 True fake: scaffold gap size wrong estimation (local) 10021369 10033716 1673449 1685761 CM091755.1 scf7180000184268 98.92 True fake: scaffold gap size wrong estimation (local) 10034588 10036870 1686245 1688577 CM091755.1 scf7180000184268 98.39 True fake: scaffold gap size wrong estimation (local) 10036946 10038306 1688685 1690045 CM091755.1 scf7180000184268 99.85 True fake: scaffold gap size wrong estimation (local) 10038558 10088132 1690232 1739162 CM091755.1 scf7180000184268 98.28 True fake: scaffold gap size wrong estimation (local) 10088289 10090388 1739280 1741384 CM091755.1 scf7180000184268 99.29 True indel: indel (> 5bp) 10090582 10096092 1741533 1747057 CM091755.1 scf7180000184268 99.17 True fake: scaffold gap size wrong estimation (local) 10096537 10097709 1747200 1748370 CM091755.1 scf7180000184268 99.15 True fake: scaffold gap size wrong estimation (local) 10098132 10101066 1748621 1751559 CM091755.1 scf7180000184268 99.59 True fake: scaffold gap size wrong estimation (local) 10101484 10103312 1751898 1753727 CM091755.1 scf7180000184268 99.18 True fake: scaffold gap size wrong estimation (local) 10103626 10105615 1753932 1755922 CM091755.1 scf7180000184268 99.5 True fake: scaffold gap size wrong estimation (local) 10106485 10107086 1756401 1757002 CM091755.1 scf7180000184268 99.67 True fake: scaffold gap size wrong estimation (local) 10107599 10108121 1757527 1758049 CM091755.1 scf7180000184268 99.04 True indel: indel (<= 5bp) 10108124 10108800 1758050 1758726 CM091755.1 scf7180000184268 99.56 True fake: scaffold gap size wrong estimation (local) 10109459 10110732 1759770 1761043 CM091755.1 scf7180000184268 99.37 True local misassembly 10112477 10113260 1762793 1763576 CM091755.1 scf7180000184268 99.49 True local misassembly 10113435 10114806 1763577 1764948 CM091755.1 scf7180000184268 99.42 True fake: scaffold gap size wrong estimation (local) 10115569 10116651 1765617 1766699 CM091755.1 scf7180000184268 99.54 True fake: scaffold gap size wrong estimation (local) 10117331 10118497 1767185 1768351 CM091755.1 scf7180000184268 99.66 True fake: scaffold gap size wrong estimation (local) 10119064 10153230 1768847 1803018 CM091755.1 scf7180000184268 99.73 True fake: scaffold gap size wrong estimation (local) 10153501 10221914 1803213 1869549 CM091755.1 scf7180000184268 96.15 True fake: scaffold gap size wrong estimation (local) 10222096 10302753 1869705 1949282 CM091755.1 scf7180000184268 97.93 True fake: scaffold gap size wrong estimation (local) 10303013 10331640 1949419 1978019 CM091755.1 scf7180000184268 99.29 True indel: indel (> 5bp) 10331753 10332426 1978123 1978796 CM091755.1 scf7180000184268 99.7 True indel: indel (<= 5bp) 10332432 10333161 1978797 1979526 CM091755.1 scf7180000184268 99.59 True local misassembly 10333530 10334469 1979527 1980466 CM091755.1 scf7180000184268 97.55 True fake: scaffold gap size wrong estimation (local) 10334831 10373982 1980788 2019799 CM091755.1 scf7180000184268 99.49 True fake: scaffold gap size wrong estimation (local) 10374203 10432449 2019951 2078162 CM091755.1 scf7180000184268 99.59 True local misassembly 10432929 10453283 2078362 2098705 CM091755.1 scf7180000184268 98.5 True relocation, inconsistency = 14571 10467855 10470676 2098706 2101522 CM091755.1 scf7180000184268 99.17 True indel: indel (> 5bp) 10470740 10530139 2101613 2160979 CM091755.1 scf7180000184268 99.3 True fake: scaffold gap size wrong estimation (local) 10530392 10560393 2161167 2191029 CM091755.1 scf7180000184268 99.19 True fake: scaffold gap size wrong estimation (local) 10560889 10561832 2191333 2192276 CM091755.1 scf7180000184268 99.79 True local misassembly 10562020 10562968 2192277 2193225 CM091755.1 scf7180000184268 97.05 True local misassembly 10563764 10564709 2194025 2194970 CM091755.1 scf7180000184268 99.68 True fake: scaffold gap size wrong estimation (local) 10565121 10577453 2195374 2207532 CM091755.1 scf7180000184268 97.6 True fake: scaffold gap size wrong estimation (local) 10577876 10602139 2207887 2231779 CM091755.1 scf7180000184268 97.96 True fake: scaffold gap size wrong estimation (local) 10602483 10604836 2232097 2234446 CM091755.1 scf7180000184268 98.85 True fake: scaffold gap size wrong estimation (local) 10605013 10606429 2234614 2236032 CM091755.1 scf7180000184268 99.63 True fake: scaffold gap size wrong estimation (local) 10606322 10612792 2236444 2242925 CM091755.1 scf7180000184268 99.54 True CONTIG scf7180000184268 2242933 misassembled 843048 889765 50 47067 CM091768.1 scf7180000184269 97.97 True translocation, scaffold gap is present 13874866 13883430 55655 47088 CM091757.1 scf7180000184269 99.81 True fake: scaffold gap size wrong estimation (local) 13761999 13873255 167935 56215 CM091757.1 scf7180000184269 97.96 True fake: scaffold gap size wrong estimation (local) 13759519 13760217 168825 168127 CM091757.1 scf7180000184269 99.71 True fake: scaffold gap size wrong estimation (local) 13758703 13759347 169735 169091 CM091757.1 scf7180000184269 99.84 True fake: scaffold gap size wrong estimation (local) 13749197 13758437 179245 169966 CM091757.1 scf7180000184269 98.98 True fake: not a misassembly (possible transposable element) 3972656 3973894 179300 180536 CM091767.1 scf7180000184269 98.79 True fake: not a misassembly (possible transposable element) 13717928 13748817 211224 180573 CM091757.1 scf7180000184269 98.55 True local misassembly 13719025 13721009 213263 211279 CM091757.1 scf7180000184269 99.29 True fake: scaffold gap size wrong estimation (local) 13697415 13718051 233926 213284 CM091757.1 scf7180000184269 99.4 True fake: scaffold gap size wrong estimation (local) 13689996 13697223 241301 234053 CM091757.1 scf7180000184269 99.46 True fake: scaffold gap size wrong estimation (local) 13684455 13689141 246329 241645 CM091757.1 scf7180000184269 99.4 True fake: scaffold gap size wrong estimation (local) 13621157 13684671 309649 246904 CM091757.1 scf7180000184269 98.17 True fake: scaffold gap size wrong estimation (local) 13616425 13621045 314394 309749 CM091757.1 scf7180000184269 99.27 True fake: scaffold gap size wrong estimation (local) 13375451 13615528 553199 314822 CM091757.1 scf7180000184269 98.37 True fake: scaffold gap size wrong estimation (local) 13366168 13375340 562479 553310 CM091757.1 scf7180000184269 99.92 True fake: scaffold gap size wrong estimation (local) 13269241 13365433 659131 562906 CM091757.1 scf7180000184269 99.86 True fake: scaffold gap size wrong estimation (local) 13217718 13268259 709592 660000 CM091757.1 scf7180000184269 98.05 True fake: not a misassembly (possible transposable element) 11494236 11494771 710128 709593 CM091762.1 scf7180000184269 99.82 True fake: not a misassembly (possible transposable element) 13206240 13218731 722640 710149 CM091757.1 scf7180000184269 99.88 True relocation, inconsistency = 14992 13167561 13185512 728376 746311 CM091757.1 scf7180000184269 99.84 True fake: scaffold gap size wrong estimation (local) 13186464 13198633 746771 758948 CM091757.1 scf7180000184269 99.97 True translocation 8897195 8899113 763527 761608 CM091752.1 scf7180000184269 99.95 True translocation 13109910 13159873 813443 763528 CM091757.1 scf7180000184269 99.83 True fake: scaffold gap size wrong estimation (local) 13107830 13109224 815285 813891 CM091757.1 scf7180000184269 100.0 True local misassembly 13103491 13106670 818465 815286 CM091757.1 scf7180000184269 99.84 True CONTIG scf7180000184269 818486 misassembled 15293482 15307008 293 13861 CM091755.1 scf7180000184270 99.72 True fake: scaffold gap size wrong estimation (local) 15307193 15323563 14012 30468 CM091755.1 scf7180000184270 99.73 True fake: scaffold gap size wrong estimation (local) 15323965 15326552 30570 33156 CM091755.1 scf7180000184270 99.96 True fake: scaffold gap size wrong estimation (local) 15326792 15365837 33327 71762 CM091755.1 scf7180000184270 97.52 True fake: scaffold gap size wrong estimation (local) 15367145 15372924 72519 78367 CM091755.1 scf7180000184270 98.02 True fake: scaffold gap size wrong estimation (local) 15373434 15378205 78563 83348 CM091755.1 scf7180000184270 99.25 True local misassembly 15378731 15393428 83349 97790 CM091755.1 scf7180000184270 97.63 True fake: scaffold gap size wrong estimation (local) 15394144 15479887 98327 181674 CM091755.1 scf7180000184270 96.51 True fake: scaffold gap size wrong estimation (local) 15480122 15504807 181807 206515 CM091755.1 scf7180000184270 99.02 True fake: scaffold gap size wrong estimation (local) 15505098 15509426 206610 210937 CM091755.1 scf7180000184270 99.45 True fake: scaffold gap size wrong estimation (local) 15510084 15547350 211524 248226 CM091755.1 scf7180000184270 97.8 True fake: scaffold gap size wrong estimation (local) 15547603 15562196 248400 262988 CM091755.1 scf7180000184270 99.9 True fake: scaffold gap size wrong estimation (local) 15562953 15566770 263290 267114 CM091755.1 scf7180000184270 99.56 True fake: scaffold gap size wrong estimation (local) 15567416 15575321 267618 275431 CM091755.1 scf7180000184270 98.64 True fake: scaffold gap size wrong estimation (local) 15575710 15577680 275820 277790 CM091755.1 scf7180000184270 100.0 True fake: scaffold gap size wrong estimation (local) 15578005 15578994 278117 279106 CM091755.1 scf7180000184270 99.7 True indel: indel (> 5bp) 15579094 15580383 279146 280435 CM091755.1 scf7180000184270 98.37 True indel: indel (<= 5bp) 15580384 15581463 280437 281516 CM091755.1 scf7180000184270 99.91 True fake: scaffold gap size wrong estimation (local) 15582389 15583869 282283 283763 CM091755.1 scf7180000184270 100.0 True fake: scaffold gap size wrong estimation (local) 15584688 15600496 284329 299918 CM091755.1 scf7180000184270 98.2 True fake: scaffold gap size wrong estimation (local) 15601071 15602531 300529 301990 CM091755.1 scf7180000184270 99.93 True fake: scaffold gap size wrong estimation (local) 15602995 15609762 302106 308882 CM091755.1 scf7180000184270 97.9 True fake: scaffold gap size wrong estimation (local) 15612125 15627188 309523 324552 CM091755.1 scf7180000184270 98.76 True fake: not a misassembly (possible transposable element) 15444507 15445825 324573 325892 CM091755.1 scf7180000184270 99.7 True fake: not a misassembly (possible transposable element) 15627268 15635616 325913 334319 CM091755.1 scf7180000184270 97.16 True fake: scaffold gap size wrong estimation (local) 15636215 15637004 334477 335265 CM091755.1 scf7180000184270 99.37 True fake: scaffold gap size wrong estimation (local) 15637378 15656326 335563 354333 CM091755.1 scf7180000184270 98.54 True fake: scaffold gap size wrong estimation (local) 15656730 15657959 354773 355994 CM091755.1 scf7180000184270 98.94 True fake: scaffold gap size wrong estimation (local) 15660384 15661796 357350 358760 CM091755.1 scf7180000184270 99.72 True fake: scaffold gap size wrong estimation (local) 15662797 15726438 359418 422345 CM091755.1 scf7180000184270 98.77 True fake: scaffold gap size wrong estimation (local) 15726652 15781838 422470 477644 CM091755.1 scf7180000184270 99.87 True fake: scaffold gap size wrong estimation (local) 15782042 15860322 477720 555567 CM091755.1 scf7180000184270 98.91 True fake: scaffold gap size wrong estimation (local) 15861111 15873969 556013 568824 CM091755.1 scf7180000184270 98.99 True fake: scaffold gap size wrong estimation (local) 15874077 15894243 568924 589089 CM091755.1 scf7180000184270 99.46 True fake: scaffold gap size wrong estimation (local) 15894349 15911142 589186 605988 CM091755.1 scf7180000184270 99.19 True fake: scaffold gap size wrong estimation (local) 15912547 15952282 606417 646126 CM091755.1 scf7180000184270 99.35 True CONTIG scf7180000184270 646291 correct 10412886 10634830 221826 7 CM091760.1 scf7180000184271 99.15 True fake: scaffold gap size wrong estimation (local) 10264552 10412731 369474 221971 CM091760.1 scf7180000184271 98.83 True fake: not a misassembly (possible transposable element) 7135534 7137026 370987 369495 CM091758.1 scf7180000184271 99.41 True fake: not a misassembly (possible transposable element) 10256897 10264597 378684 370988 CM091760.1 scf7180000184271 99.48 True fake: scaffold gap size wrong estimation (local) 10253513 10256703 382015 378860 CM091760.1 scf7180000184271 97.95 True fake: scaffold gap size wrong estimation (local) 10198229 10253531 436745 382036 CM091760.1 scf7180000184271 98.29 True indel: indel (<= 5bp) 10192711 10198122 442223 436851 CM091760.1 scf7180000184271 99.0 True fake: scaffold gap size wrong estimation (local) 9939268 10192217 694589 442506 CM091760.1 scf7180000184271 99.23 True fake: scaffold gap size wrong estimation (local) 9830661 9938428 802695 694926 CM091760.1 scf7180000184271 99.51 True fake: scaffold gap size wrong estimation (local) 9819550 9830402 813779 802916 CM091760.1 scf7180000184271 99.6 True fake: scaffold gap size wrong estimation (local) 9811957 9819455 821365 813873 CM091760.1 scf7180000184271 99.6 True indel: indel (> 5bp) 9696061 9811908 937179 821424 CM091760.1 scf7180000184271 99.62 True fake: scaffold gap size wrong estimation (local) 9693214 9694928 938915 937200 CM091760.1 scf7180000184271 99.88 True fake: scaffold gap size wrong estimation (local) 9654884 9696181 980028 938936 CM091760.1 scf7180000184271 99.1 True fake: scaffold gap size wrong estimation (local) 9635687 9654763 999193 980122 CM091760.1 scf7180000184271 99.93 True fake: scaffold gap size wrong estimation (local) 9572065 9634814 1062132 999374 CM091760.1 scf7180000184271 99.53 True fake: scaffold gap size wrong estimation (local) 9549152 9571982 1085075 1062227 CM091760.1 scf7180000184271 99.41 True fake: scaffold gap size wrong estimation (local) 9393740 9548765 1240776 1085342 CM091760.1 scf7180000184271 98.66 True indel: indel (> 5bp) 9302263 9393689 1331920 1240856 CM091760.1 scf7180000184271 98.93 True local misassembly 9271633 9302018 1362233 1331986 CM091760.1 scf7180000184271 98.82 True fake: scaffold gap size wrong estimation (local) 9188430 9271276 1444916 1362453 CM091760.1 scf7180000184271 98.55 True fake: not a misassembly (possible transposable element) 2719379 2720266 1445824 1444937 CM091764.1 scf7180000184271 100.0 True fake: not a misassembly (possible transposable element) 9176570 9188500 1457730 1445835 CM091760.1 scf7180000184271 98.89 True fake: scaffold gap size wrong estimation (local) 9157036 9173119 1473897 1457821 CM091760.1 scf7180000184271 99.35 True fake: scaffold gap size wrong estimation (local) 9121515 9156873 1509539 1474024 CM091760.1 scf7180000184271 97.77 True CONTIG scf7180000184271 1509539 correct 1457385 1458268 1 884 CM091761.1 scf7180000184272 99.43 True fake: scaffold gap size wrong estimation (local) 1458985 1579186 1511 121450 CM091761.1 scf7180000184272 99.35 True fake: scaffold gap size wrong estimation (local) 1579386 1640706 121882 183364 CM091761.1 scf7180000184272 99.25 True indel: indel (> 5bp) 1640893 1651481 183619 194206 CM091761.1 scf7180000184272 99.66 True fake: scaffold gap size wrong estimation (local) 1651976 1676046 194227 218512 CM091761.1 scf7180000184272 98.41 True indel: indel (> 5bp) 1676215 1714538 218696 256944 CM091761.1 scf7180000184272 99.37 True indel: indel (> 5bp) 1714640 1771022 257052 313404 CM091761.1 scf7180000184272 99.46 True indel: indel (<= 5bp) 1771091 1864733 313477 407248 CM091761.1 scf7180000184272 99.37 True indel: indel (> 5bp) 1864803 1937632 407333 480167 CM091761.1 scf7180000184272 99.39 True relocation, inconsistency = 66708 2004347 2341583 480174 818301 CM091761.1 scf7180000184272 98.99 True fake: scaffold gap size wrong estimation (extensive) 2341956 2392710 827002 877713 CM091761.1 scf7180000184272 99.42 True indel: indel (> 5bp) 2392796 2438389 877740 923349 CM091761.1 scf7180000184272 99.6 True indel: indel (> 5bp) 2438421 2509943 923398 994547 CM091761.1 scf7180000184272 98.93 True indel: indel (> 5bp) 2510009 2583536 994596 1068120 CM091761.1 scf7180000184272 99.78 True fake: scaffold gap size wrong estimation (local) 2584536 2631266 1068794 1115507 CM091761.1 scf7180000184272 99.89 True relocation, inconsistency = 1828003 4459869 4460368 1116606 1116107 CM091761.1 scf7180000184272 99.4 True indel: indel (<= 5bp) 4456613 4459850 1119860 1116623 CM091761.1 scf7180000184272 98.18 True local misassembly 4454828 4456148 1121315 1119995 CM091761.1 scf7180000184272 99.24 True local misassembly 4452293 4454023 1123849 1122119 CM091761.1 scf7180000184272 96.36 True local misassembly 4440193 4451255 1135617 1124607 CM091761.1 scf7180000184272 98.17 True fake: scaffold gap size wrong estimation (local) 4438677 4439819 1137270 1136127 CM091761.1 scf7180000184272 98.78 True relocation, inconsistency = 188760 4628580 4654808 1137271 1162936 CM091761.1 scf7180000184272 97.2 True fake: scaffold gap size wrong estimation (local) 4655351 4680896 1163605 1189157 CM091761.1 scf7180000184272 99.39 True fake: scaffold gap size wrong estimation (local) 4681917 4683745 1189982 1191841 CM091761.1 scf7180000184272 97.93 True fake: scaffold gap size wrong estimation (local) 4684497 4685530 1192741 1193774 CM091761.1 scf7180000184272 99.13 True fake: scaffold gap size wrong estimation (local) 4686645 4688460 1194643 1196460 CM091761.1 scf7180000184272 99.28 True local misassembly 4689306 4741595 1196690 1249002 CM091761.1 scf7180000184272 99.74 True fake: scaffold gap size wrong estimation (local) 4742299 4770639 1249450 1277780 CM091761.1 scf7180000184272 99.87 True translocation, scaffold gap is present 7846517 7881019 1277801 1312346 CM091755.1 scf7180000184272 99.38 True fake: scaffold gap size wrong estimation (local) 7881160 7885257 1312478 1316590 CM091755.1 scf7180000184272 98.91 True fake: scaffold gap size wrong estimation (local) 7885478 7891775 1316751 1323074 CM091755.1 scf7180000184272 98.53 True fake: scaffold gap size wrong estimation (local) 7891912 7911883 1323177 1343015 CM091755.1 scf7180000184272 98.67 True fake: scaffold gap size wrong estimation (local) 7914544 7939075 1343722 1368247 CM091755.1 scf7180000184272 99.72 True indel: indel (> 5bp) 7939142 7942563 1368327 1371759 CM091755.1 scf7180000184272 99.53 True fake: scaffold gap size wrong estimation (local) 7942759 8013662 1371945 1442653 CM091755.1 scf7180000184272 99.11 True fake: scaffold gap size wrong estimation (local) 8013805 8040052 1442906 1469148 CM091755.1 scf7180000184272 99.37 True fake: scaffold gap size wrong estimation (local) 8040385 8043869 1469216 1472720 CM091755.1 scf7180000184272 99.51 True fake: scaffold gap size wrong estimation (local) 8044078 8045639 1473081 1474642 CM091755.1 scf7180000184272 99.64 True translocation 6285613 6335206 1524231 1474643 CM091761.1 scf7180000184272 99.49 True indel: indel (> 5bp) 6221061 6285524 1588826 1524326 CM091761.1 scf7180000184272 99.53 True fake: scaffold gap size wrong estimation (local) 6158481 6220280 1650992 1589259 CM091761.1 scf7180000184272 99.07 True fake: scaffold gap size wrong estimation (local) 5938265 6158333 1870184 1651110 CM091761.1 scf7180000184272 98.94 True indel: indel (<= 5bp) 5926426 5938226 1882045 1870227 CM091761.1 scf7180000184272 99.35 True indel: indel (> 5bp) 5865699 5926044 1943452 1882449 CM091761.1 scf7180000184272 99.06 True fake: scaffold gap size wrong estimation (local) 5837626 5865488 1971516 1943671 CM091761.1 scf7180000184272 99.25 True fake: scaffold gap size wrong estimation (local) 5827572 5837451 1981539 1971659 CM091761.1 scf7180000184272 99.7 True local misassembly 5773364 5821932 2030353 1981706 CM091761.1 scf7180000184272 99.66 True fake: scaffold gap size wrong estimation (local) 5772672 5773267 2031042 2030465 CM091761.1 scf7180000184272 96.15 True CONTIG scf7180000184272 2031047 misassembled 2420768 2423486 2719 1 CM091760.1 scf7180000184273 100.0 True fake: scaffold gap size wrong estimation (local) 2414350 2419966 8900 3284 CM091760.1 scf7180000184273 99.95 True fake: scaffold gap size wrong estimation (local) 2412416 2413336 10988 10067 CM091760.1 scf7180000184273 99.46 True fake: scaffold gap size wrong estimation (local) 2404440 2411797 18162 11062 CM091760.1 scf7180000184273 95.78 True relocation, scaffold gap is present, inconsistency = 3972815 6385515 6386576 19065 20113 CM091760.1 scf7180000184273 96.99 True fake: scaffold gap size wrong estimation (local) 6387348 6391632 20918 25200 CM091760.1 scf7180000184273 99.7 True translocation, scaffold gap is present 2892456 2893194 26220 26979 CM091752.1 scf7180000184273 99.32 True fake: scaffold gap size wrong estimation (local) 2894633 2897041 28517 30930 CM091752.1 scf7180000184273 98.87 True translocation 2985817 2987076 30931 32190 CM091768.1 scf7180000184273 99.53 True translocation, scaffold gap is present 3753968 3756300 34561 32211 CM091752.1 scf7180000184273 96.31 True indel: indel (<= 5bp) 3752518 3753794 36089 34739 CM091752.1 scf7180000184273 95.72 True fake: scaffold gap size wrong estimation (local) 3749320 3750230 38240 37323 CM091752.1 scf7180000184273 99.13 True local misassembly 3751141 3752052 39172 38261 CM091752.1 scf7180000184273 99.01 True relocation, scaffold gap is present, inconsistency = 671841 3078058 3079094 40440 39378 CM091752.1 scf7180000184273 98.85 True local misassembly 3079395 3080536 41837 40696 CM091752.1 scf7180000184273 100.0 True relocation, scaffold gap is present, inconsistency = -669803 3748318 3749142 42718 41893 CM091752.1 scf7180000184273 99.64 True fake: scaffold gap size wrong estimation (local) 3735718 3746077 54659 44297 CM091752.1 scf7180000184273 99.69 True fake: scaffold gap size wrong estimation (local) 3733656 3735496 56661 54821 CM091752.1 scf7180000184273 99.4 True fake: scaffold gap size wrong estimation (local) 3731629 3732949 58561 57207 CM091752.1 scf7180000184273 98.6 True translocation 18578430 18587892 68026 58562 CM091751.1 scf7180000184273 98.97 True fake: not a misassembly (possible transposable element) 18595425 18596973 70064 68516 CM091751.1 scf7180000184273 99.74 True fake: not a misassembly (possible transposable element) 18577605 18578203 70683 70085 CM091751.1 scf7180000184273 98.33 True indel: indel (<= 5bp) 18576152 18577604 72137 70685 CM091751.1 scf7180000184273 99.31 True local misassembly 18574641 18575355 73669 72955 CM091751.1 scf7180000184273 96.78 True local misassembly 18571834 18574217 76053 73670 CM091751.1 scf7180000184273 99.12 True indel: indel (> 5bp) 18570681 18571824 77197 76054 CM091751.1 scf7180000184273 95.72 True indel: indel (> 5bp) 18568947 18570460 78919 77406 CM091751.1 scf7180000184273 99.27 True indel: indel (> 5bp) 18567647 18568915 80188 78920 CM091751.1 scf7180000184273 98.5 True fake: scaffold gap size wrong estimation (local) 18565705 18566649 82171 81223 CM091751.1 scf7180000184273 98.42 True translocation, scaffold gap is present 4472307 4473055 90058 90806 CM091754.1 scf7180000184273 96.93 True local misassembly 4473294 4473945 90807 91458 CM091754.1 scf7180000184273 95.25 True relocation, scaffold gap is present, inconsistency = 18336 4451385 4453359 95033 93057 CM091754.1 scf7180000184273 98.84 True fake: scaffold gap size wrong estimation (local) 4447192 4448528 98394 97058 CM091754.1 scf7180000184273 98.13 True local misassembly 4446161 4446999 99233 98395 CM091754.1 scf7180000184273 99.76 True fake: scaffold gap size wrong estimation (local) 4440620 4444980 104362 100138 CM091754.1 scf7180000184273 96.17 True fake: scaffold gap size wrong estimation (local) 4434824 4440050 109883 104636 CM091754.1 scf7180000184273 99.31 True translocation, scaffold gap is present 10820251 10820900 109995 110644 CM091765.1 scf7180000184273 100.0 True fake: scaffold gap size wrong estimation (local) 10821699 10822566 111684 112551 CM091765.1 scf7180000184273 100.0 True local misassembly 10821180 10824031 112602 115431 CM091765.1 scf7180000184273 99.19 True fake: scaffold gap size wrong estimation (local) 10824905 10827457 115880 118434 CM091765.1 scf7180000184273 99.92 True fake: scaffold gap size wrong estimation (local) 10827547 10834057 118532 125043 CM091765.1 scf7180000184273 99.71 True fake: scaffold gap size wrong estimation (local) 10834139 10837614 125134 128722 CM091765.1 scf7180000184273 95.02 True fake: scaffold gap size wrong estimation (local) 10840406 10842214 130727 132504 CM091765.1 scf7180000184273 97.9 True fake: scaffold gap size wrong estimation (extensive) 10855130 10865147 137003 147018 CM091765.1 scf7180000184273 99.9 True fake: scaffold gap size wrong estimation (local) 10866188 10866962 147899 148691 CM091765.1 scf7180000184273 100.0 True fake: scaffold gap size wrong estimation (local) 10867562 10868552 148765 149755 CM091765.1 scf7180000184273 99.8 True translocation, scaffold gap is present 17408404 17409355 150390 151343 CM091751.1 scf7180000184273 97.4 True fake: scaffold gap size wrong estimation (local) 17409452 17410932 151460 152967 CM091751.1 scf7180000184273 99.4 True fake: scaffold gap size wrong estimation (local) 17411088 17418276 153098 160017 CM091751.1 scf7180000184273 96.2 True fake: scaffold gap size wrong estimation (local) 17419951 17422356 161048 163454 CM091751.1 scf7180000184273 99.96 True fake: scaffold gap size wrong estimation (local) 17422442 17424254 163535 165379 CM091751.1 scf7180000184273 99.34 True fake: scaffold gap size wrong estimation (local) 17424882 17427409 165662 168190 CM091751.1 scf7180000184273 99.84 True translocation, scaffold gap is present 11354238 11355207 171830 170861 CM091765.1 scf7180000184273 99.9 True translocation, scaffold gap is present 361558 362307 172044 172793 CM091764.1 scf7180000184273 99.87 True fake: scaffold gap size wrong estimation (local) 363042 363818 173903 174679 CM091764.1 scf7180000184273 99.74 True fake: scaffold gap size wrong estimation (local) 364353 367433 174972 178054 CM091764.1 scf7180000184273 99.87 True relocation, scaffold gap is present, inconsistency = 13316 381262 390759 178567 188064 CM091764.1 scf7180000184273 99.92 True fake: scaffold gap size wrong estimation (local) 391592 393964 188630 191003 CM091764.1 scf7180000184273 99.92 True translocation, scaffold gap is present 13454422 13455449 192287 193314 CM091758.1 scf7180000184273 99.81 True local misassembly 13453793 13455326 193755 195288 CM091758.1 scf7180000184273 99.87 True fake: scaffold gap size wrong estimation (local) 13456337 13458946 195339 197972 CM091758.1 scf7180000184273 99.5 True translocation, scaffold gap is present 1865333 1867823 200485 197994 CM091764.1 scf7180000184273 99.8 True fake: scaffold gap size wrong estimation (local) 1863759 1864370 202059 201448 CM091764.1 scf7180000184273 100.0 True fake: scaffold gap size wrong estimation (local) 1860412 1861085 204651 203978 CM091764.1 scf7180000184273 100.0 True translocation, scaffold gap is present 4854117 4860575 211147 204689 CM091768.1 scf7180000184273 100.0 True fake: scaffold gap size wrong estimation (local) 4850442 4853936 214672 211336 CM091768.1 scf7180000184273 95.45 True fake: scaffold gap size wrong estimation (local) 4838462 4850065 226160 214840 CM091768.1 scf7180000184273 97.53 True fake: scaffold gap size wrong estimation (local) 4835622 4836591 228405 227436 CM091768.1 scf7180000184273 99.9 True fake: scaffold gap size wrong estimation (local) 4826917 4835318 237228 228828 CM091768.1 scf7180000184273 99.98 True fake: scaffold gap size wrong estimation (local) 4824310 4825236 239444 238518 CM091768.1 scf7180000184273 100.0 True fake: scaffold gap size wrong estimation (local) 4821742 4823110 242162 240794 CM091768.1 scf7180000184273 100.0 True translocation, scaffold gap is present 15869283 15870020 243872 244634 CM091757.1 scf7180000184273 99.19 True fake: scaffold gap size wrong estimation (local) 15871354 15872099 245536 246281 CM091757.1 scf7180000184273 98.26 True translocation, scaffold gap is present 4697790 4698562 247428 248200 CM091768.1 scf7180000184273 100.0 True fake: scaffold gap size wrong estimation (local) 4699884 4704191 249228 253534 CM091768.1 scf7180000184273 99.98 True fake: not a misassembly (possible transposable element) 8243760 8244687 253657 254584 CM091767.1 scf7180000184273 100.0 True fake: not a misassembly (possible transposable element) 4704716 4708091 254605 258075 CM091768.1 scf7180000184273 97.77 True relocation, scaffold gap is present, inconsistency = -82529 4625583 4629509 258096 262021 CM091768.1 scf7180000184273 99.97 True relocation, scaffold gap is present, inconsistency = 193361 4823254 4823958 262967 262262 CM091768.1 scf7180000184273 99.06 True translocation 515049 516220 262968 264138 CM091764.1 scf7180000184273 99.15 True translocation, scaffold gap is present 4708032 4709063 264215 265246 CM091768.1 scf7180000184273 99.81 True indel: indel (<= 5bp) 4709065 4711662 265247 267844 CM091768.1 scf7180000184273 100.0 True local misassembly 4711954 4712560 267845 268451 CM091768.1 scf7180000184273 96.54 True fake: scaffold gap size wrong estimation (local) 4713028 4715322 268811 271105 CM091768.1 scf7180000184273 99.08 True relocation, scaffold gap is present, inconsistency = 33837 4750271 4754837 276781 272217 CM091768.1 scf7180000184273 99.78 True relocation, scaffold gap is present, inconsistency = 19634 4729672 4730526 277746 276892 CM091768.1 scf7180000184273 100.0 True fake: scaffold gap size wrong estimation (local) 4728122 4729317 279382 278187 CM091768.1 scf7180000184273 100.0 True fake: not a misassembly (possible transposable element) 4747671 4748438 280170 279403 CM091768.1 scf7180000184273 100.0 True fake: not a misassembly (possible transposable element) 4726374 4727665 281497 280192 CM091768.1 scf7180000184273 99.92 True translocation, scaffold gap is present 3056212 3056839 281968 282595 CM091752.1 scf7180000184273 99.68 True relocation, scaffold gap is present, inconsistency = -191326 2871501 2872199 288583 289278 CM091752.1 scf7180000184273 96.71 True relocation, scaffold gap is present, inconsistency = -2856396 21191 22211 294666 295677 CM091752.1 scf7180000184273 95.21 True relocation, scaffold gap is present, inconsistency = 3035013 3057347 3061905 295800 300393 CM091752.1 scf7180000184273 99.69 True translocation, scaffold gap is present 11809904 11811028 301753 300631 CM091758.1 scf7180000184273 99.82 True translocation, scaffold gap is present 283823 292821 310520 301774 CM091753.1 scf7180000184273 97.19 True fake: scaffold gap size wrong estimation (local) 281755 282675 311562 310642 CM091753.1 scf7180000184273 99.89 True fake: scaffold gap size wrong estimation (local) 276081 281243 317660 312386 CM091753.1 scf7180000184273 98.35 True fake: scaffold gap size wrong estimation (local) 274383 275864 319274 317793 CM091753.1 scf7180000184273 99.93 True fake: scaffold gap size wrong estimation (local) 265738 272523 326369 319764 CM091753.1 scf7180000184273 97.25 True fake: scaffold gap size wrong estimation (local) 263706 264653 328189 327250 CM091753.1 scf7180000184273 97.47 True relocation, scaffold gap is present, inconsistency = 175228 83300 88383 328284 333361 CM091753.1 scf7180000184273 99.86 True fake: scaffold gap size wrong estimation (local) 88941 89745 333757 334561 CM091753.1 scf7180000184273 99.75 True fake: not a misassembly (possible transposable element) 257450 262938 340099 334612 CM091753.1 scf7180000184273 99.96 True fake: not a misassembly (possible transposable element) 90969 91598 340139 340767 CM091753.1 scf7180000184273 97.46 True fake: scaffold gap size wrong estimation (local) 92721 93355 341658 342292 CM091753.1 scf7180000184273 99.84 True fake: not a misassembly (possible transposable element) 253817 255918 345126 343025 CM091753.1 scf7180000184273 99.76 True fake: not a misassembly (possible transposable element) 94728 101352 345586 352227 CM091753.1 scf7180000184273 99.98 True fake: scaffold gap size wrong estimation (local) 103076 103707 353967 354598 CM091753.1 scf7180000184273 100.0 True fake: scaffold gap size wrong estimation (local) 103799 104968 354687 355856 CM091753.1 scf7180000184273 100.0 True fake: scaffold gap size wrong estimation (local) 105729 109082 356261 359613 CM091753.1 scf7180000184273 99.91 True fake: scaffold gap size wrong estimation (local) 110476 122427 360484 372256 CM091753.1 scf7180000184273 95.63 True fake: scaffold gap size wrong estimation (local) 123493 129018 373337 378646 CM091753.1 scf7180000184273 96.02 True fake: scaffold gap size wrong estimation (local) 130022 137349 379164 386681 CM091753.1 scf7180000184273 97.65 True fake: scaffold gap size wrong estimation (local) 138743 151180 386984 399208 CM091753.1 scf7180000184273 98.18 True fake: scaffold gap size wrong estimation (local) 151431 155819 399333 403557 CM091753.1 scf7180000184273 95.65 True translocation, scaffold gap is present 15735683 15736312 407584 406955 CM091757.1 scf7180000184273 98.73 True fake: scaffold gap size wrong estimation (local) 15731824 15734790 414781 411872 CM091757.1 scf7180000184273 97.83 True fake: scaffold gap size wrong estimation (local) 15731090 15731629 415744 415205 CM091757.1 scf7180000184273 99.81 True fake: not a misassembly (possible transposable element) 15587886 15588394 416022 416530 CM091757.1 scf7180000184273 99.61 True fake: not a misassembly (possible transposable element) 15729271 15730056 418212 417412 CM091757.1 scf7180000184273 97.7 True translocation, scaffold gap is present 8286537 8287881 418273 419617 CM091767.1 scf7180000184273 99.26 True translocation, scaffold gap is present 6339888 6342958 420710 423807 CM091768.1 scf7180000184273 99.16 True translocation, scaffold gap is present 8815739 8816527 425979 425191 CM091767.1 scf7180000184273 99.75 True indel: indel (> 5bp) 8814696 8815443 427016 426269 CM091767.1 scf7180000184273 100.0 True indel: indel (> 5bp) 8813664 8814424 428097 427337 CM091767.1 scf7180000184273 95.01 True fake: scaffold gap size wrong estimation (local) 8812988 8813663 429165 428490 CM091767.1 scf7180000184273 99.41 True relocation, scaffold gap is present, inconsistency = 523746 8287934 8288629 429778 430472 CM091767.1 scf7180000184273 98.99 True fake: scaffold gap size wrong estimation (local) 8291296 8292204 430499 431407 CM091767.1 scf7180000184273 99.56 True local misassembly 8290290 8291222 431519 432451 CM091767.1 scf7180000184273 98.93 True fake: not a misassembly (possible transposable element) 6346019 6348319 432476 434776 CM091768.1 scf7180000184273 99.61 True fake: not a misassembly (possible transposable element) 8292824 8293543 435849 436568 CM091767.1 scf7180000184273 98.19 True indel: indel (> 5bp) 8293605 8294712 436648 437755 CM091767.1 scf7180000184273 99.1 True indel: indel (<= 5bp) 8294713 8295213 437757 438257 CM091767.1 scf7180000184273 98.8 True fake: scaffold gap size wrong estimation (local) 8297990 8302391 439734 444135 CM091767.1 scf7180000184273 100.0 True fake: scaffold gap size wrong estimation (local) 8303735 8304548 444755 445568 CM091767.1 scf7180000184273 99.14 True fake: scaffold gap size wrong estimation (local) 8306273 8307444 446862 448033 CM091767.1 scf7180000184273 98.29 True indel: indel (<= 5bp) 8307445 8308240 448035 448830 CM091767.1 scf7180000184273 100.0 True indel: indel (<= 5bp) 8308242 8310198 448831 450787 CM091767.1 scf7180000184273 99.85 True local misassembly 8310382 8311335 450788 451741 CM091767.1 scf7180000184273 97.8 True indel: indel (<= 5bp) 8311336 8315783 451744 456191 CM091767.1 scf7180000184273 99.98 True indel: indel (<= 5bp) 8315784 8317902 456193 458311 CM091767.1 scf7180000184273 100.0 True indel: indel (> 5bp) 8317988 8319783 458373 460168 CM091767.1 scf7180000184273 99.83 True fake: scaffold gap size wrong estimation (local) 8320552 8324316 460382 464146 CM091767.1 scf7180000184273 99.44 True indel: indel (<= 5bp) 8324318 8324970 464147 464799 CM091767.1 scf7180000184273 99.85 True indel: indel (> 5bp) 8324971 8325848 464807 465684 CM091767.1 scf7180000184273 98.52 True indel: indel (<= 5bp) 8325849 8326833 465686 466670 CM091767.1 scf7180000184273 100.0 True translocation, scaffold gap is present 16701082 16702003 469530 470452 CM091752.1 scf7180000184273 99.78 True fake: scaffold gap size wrong estimation (local) 16703510 16704446 470492 471428 CM091752.1 scf7180000184273 100.0 True fake: scaffold gap size wrong estimation (local) 16704447 16705496 471699 472748 CM091752.1 scf7180000184273 99.9 True indel: indel (<= 5bp) 16705501 16706933 472755 474187 CM091752.1 scf7180000184273 99.79 True indel: indel (<= 5bp) 16706934 16707519 474189 474774 CM091752.1 scf7180000184273 95.73 True translocation, scaffold gap is present 8870091 8875916 481790 476064 CM091767.1 scf7180000184273 96.59 True fake: scaffold gap size wrong estimation (local) 8861743 8862929 485207 484021 CM091767.1 scf7180000184273 99.58 True translocation, scaffold gap is present 15539533 15542552 485784 488777 CM091757.1 scf7180000184273 96.4 True indel: indel (> 5bp) 15542619 15545016 488865 491261 CM091757.1 scf7180000184273 98.58 True fake: not a misassembly (possible transposable element) 8853340 8854934 492885 491282 CM091767.1 scf7180000184273 96.57 True fake: not a misassembly (possible transposable element) 15546028 15546553 492906 493431 CM091757.1 scf7180000184273 100.0 True translocation, scaffold gap is present 8851283 8854190 496359 493452 CM091767.1 scf7180000184273 99.48 True fake: scaffold gap size wrong estimation (local) 8850155 8851009 497443 496589 CM091767.1 scf7180000184273 100.0 True indel: indel (<= 5bp) 8848528 8850153 499069 497444 CM091767.1 scf7180000184273 100.0 True fake: scaffold gap size wrong estimation (local) 8846910 8848527 501161 499544 CM091767.1 scf7180000184273 100.0 True indel: indel (<= 5bp) 8846162 8846909 501910 501163 CM091767.1 scf7180000184273 100.0 True fake: scaffold gap size wrong estimation (local) 8844949 8845543 504455 503861 CM091767.1 scf7180000184273 99.66 True indel: indel (> 5bp) 8843913 8844593 505513 504833 CM091767.1 scf7180000184273 99.12 True local misassembly 8830320 8843668 518915 505635 CM091767.1 scf7180000184273 98.95 True translocation 16347337 16348571 520150 518916 CM091757.1 scf7180000184273 100.0 True fake: scaffold gap size wrong estimation (local) 16341650 16346627 525592 520606 CM091757.1 scf7180000184273 99.9 True fake: scaffold gap size wrong estimation (local) 16340652 16341370 526676 525958 CM091757.1 scf7180000184273 100.0 True translocation, scaffold gap is present 2704488 2706001 526730 528243 CM091758.1 scf7180000184273 99.47 True translocation, scaffold gap is present 7742806 7743745 528956 529895 CM091767.1 scf7180000184273 98.51 True fake: scaffold gap size wrong estimation (local) 7744357 7750333 530027 536004 CM091767.1 scf7180000184273 99.9 True fake: scaffold gap size wrong estimation (local) 7751515 7774746 536540 558818 CM091767.1 scf7180000184273 95.71 True indel: indel (<= 5bp) 7774759 7775959 558835 560036 CM091767.1 scf7180000184273 97.76 True fake: scaffold gap size wrong estimation (local) 7776752 7779961 560172 563381 CM091767.1 scf7180000184273 99.97 True fake: scaffold gap size wrong estimation (local) 7780364 7781632 563720 564988 CM091767.1 scf7180000184273 100.0 True fake: scaffold gap size wrong estimation (local) 7782163 7783131 565578 566546 CM091767.1 scf7180000184273 100.0 True indel: indel (> 5bp) 7783139 7783859 566547 567267 CM091767.1 scf7180000184273 95.7 True fake: scaffold gap size wrong estimation (local) 7783860 7784858 567297 568295 CM091767.1 scf7180000184273 98.8 True fake: scaffold gap size wrong estimation (local) 7785768 7786764 570195 571191 CM091767.1 scf7180000184273 99.9 True fake: scaffold gap size wrong estimation (local) 7787368 7790898 571401 574931 CM091767.1 scf7180000184273 99.83 True fake: scaffold gap size wrong estimation (local) 7791179 7798732 575182 582890 CM091767.1 scf7180000184273 98.3 True fake: scaffold gap size wrong estimation (local) 7800277 7803088 583862 586670 CM091767.1 scf7180000184273 99.68 True fake: scaffold gap size wrong estimation (local) 7803281 7804524 586840 588083 CM091767.1 scf7180000184273 100.0 True fake: scaffold gap size wrong estimation (local) 7805353 7806848 588920 590450 CM091767.1 scf7180000184273 99.53 True translocation, scaffold gap is present 6377959 6378960 595436 594435 CM091768.1 scf7180000184273 98.9 True translocation, scaffold gap is present 15537640 15538523 596696 595814 CM091757.1 scf7180000184273 99.77 True translocation, scaffold gap is present 11536096 11537077 598162 597181 CM091765.1 scf7180000184273 99.8 True fake: scaffold gap size wrong estimation (local) 11535333 11535947 599263 598649 CM091765.1 scf7180000184273 97.19 True fake: not a misassembly (possible transposable element) 6374313 6376313 601276 599264 CM091768.1 scf7180000184273 97.52 True fake: not a misassembly (possible transposable element) 11531462 11533779 603633 601316 CM091765.1 scf7180000184273 100.0 True fake: scaffold gap size wrong estimation (local) 11528968 11530145 606276 605099 CM091765.1 scf7180000184273 95.76 True translocation, scaffold gap is present 1539655 1540387 607306 608036 CM091764.1 scf7180000184273 99.73 True local misassembly 1538694 1539673 608091 609094 CM091764.1 scf7180000184273 99.19 True fake: not a misassembly (possible transposable element) 15924458 15925749 610406 609115 CM091757.1 scf7180000184273 100.0 True fake: not a misassembly (possible transposable element) 1541508 1542366 611543 612401 CM091764.1 scf7180000184273 100.0 True fake: scaffold gap size wrong estimation (local) 1544323 1545678 613434 614789 CM091764.1 scf7180000184273 99.93 True fake: scaffold gap size wrong estimation (local) 1547532 1548442 616208 617118 CM091764.1 scf7180000184273 99.89 True indel: indel (> 5bp) 1548556 1550098 617224 618766 CM091764.1 scf7180000184273 99.87 True relocation, scaffold gap is present, inconsistency = 88308 1639725 1640346 620706 620085 CM091764.1 scf7180000184273 99.52 True fake: scaffold gap size wrong estimation (local) 1628578 1639003 631907 621488 CM091764.1 scf7180000184273 99.5 True fake: not a misassembly (possible transposable element) 7593091 7595028 631958 633895 CM091767.1 scf7180000184273 99.85 True fake: not a misassembly (possible transposable element) 1625989 1628469 636490 634010 CM091764.1 scf7180000184273 99.8 True indel: indel (<= 5bp) 1624381 1625987 638097 636491 CM091764.1 scf7180000184273 99.75 True indel: indel (<= 5bp) 1623415 1624380 639064 638099 CM091764.1 scf7180000184273 100.0 True indel: indel (<= 5bp) 1620288 1623414 642192 639066 CM091764.1 scf7180000184273 98.18 True local misassembly 1617042 1619747 644898 642193 CM091764.1 scf7180000184273 97.78 True local misassembly 1610286 1616634 651247 644899 CM091764.1 scf7180000184273 99.84 True local misassembly 1606064 1609660 655419 651877 CM091764.1 scf7180000184273 95.73 True fake: scaffold gap size wrong estimation (local) 1603538 1604859 658308 656987 CM091764.1 scf7180000184273 99.92 True fake: scaffold gap size wrong estimation (local) 1601578 1602666 660279 659191 CM091764.1 scf7180000184273 99.63 True fake: scaffold gap size wrong estimation (local) 1598739 1599434 662695 662000 CM091764.1 scf7180000184273 100.0 True translocation, scaffold gap is present 2474 199742 665549 863247 CM091759.1 scf7180000184273 99.31 True fake: scaffold gap size wrong estimation (local) 199920 335858 863369 999421 CM091759.1 scf7180000184273 99.62 True indel: indel (> 5bp) 335990 336704 999603 1000317 CM091759.1 scf7180000184273 99.72 True indel: indel (<= 5bp) 336705 337595 1000319 1001209 CM091759.1 scf7180000184273 99.66 True indel: indel (<= 5bp) 337678 339803 1001293 1003418 CM091759.1 scf7180000184273 99.67 True indel: indel (<= 5bp) 339805 341493 1003419 1005107 CM091759.1 scf7180000184273 99.76 True local misassembly 345189 348016 1005108 1007935 CM091759.1 scf7180000184273 99.93 True indel: indel (<= 5bp) 348017 349679 1007937 1009599 CM091759.1 scf7180000184273 99.76 True fake: scaffold gap size wrong estimation (local) 350404 353890 1010356 1013842 CM091759.1 scf7180000184273 99.77 True indel: indel (<= 5bp) 353891 354459 1013844 1014412 CM091759.1 scf7180000184273 99.65 True indel: indel (<= 5bp) 354461 355411 1014413 1015363 CM091759.1 scf7180000184273 99.89 True indel: indel (> 5bp) 355745 356450 1015679 1016384 CM091759.1 scf7180000184273 100.0 True indel: indel (<= 5bp) 356786 358719 1016724 1018657 CM091759.1 scf7180000184273 99.48 True indel: indel (<= 5bp) 358720 360507 1018659 1020446 CM091759.1 scf7180000184273 99.5 True indel: indel (> 5bp) 360558 361720 1020488 1021650 CM091759.1 scf7180000184273 99.91 True indel: indel (<= 5bp) 361722 365261 1021651 1025190 CM091759.1 scf7180000184273 99.8 True indel: indel (<= 5bp) 365263 367670 1025191 1027598 CM091759.1 scf7180000184273 99.42 True indel: indel (> 5bp) 367690 369040 1027599 1028949 CM091759.1 scf7180000184273 99.41 True indel: indel (<= 5bp) 369083 370386 1028996 1030299 CM091759.1 scf7180000184273 99.85 True indel: indel (> 5bp) 370447 371366 1030369 1031288 CM091759.1 scf7180000184273 99.67 True indel: indel (<= 5bp) 371367 374384 1031290 1034307 CM091759.1 scf7180000184273 99.8 True indel: stretch of mismatches 374722 375620 1034645 1035543 CM091759.1 scf7180000184273 99.78 True indel: indel (> 5bp) 375933 377265 1035839 1037171 CM091759.1 scf7180000184273 99.92 True indel: indel (<= 5bp) 377266 377789 1037173 1037696 CM091759.1 scf7180000184273 99.62 True indel: indel (<= 5bp) 377790 381367 1037698 1041275 CM091759.1 scf7180000184273 99.83 True indel: indel (<= 5bp) 381368 382150 1041277 1042059 CM091759.1 scf7180000184273 99.49 True indel: indel (<= 5bp) 382152 383348 1042060 1043256 CM091759.1 scf7180000184273 99.92 True indel: indel (<= 5bp) 383349 384794 1043258 1044703 CM091759.1 scf7180000184273 99.72 True indel: indel (> 5bp) 384795 386921 1044720 1046846 CM091759.1 scf7180000184273 99.62 True indel: indel (> 5bp) 387121 389089 1047101 1049069 CM091759.1 scf7180000184273 99.59 True indel: indel (<= 5bp) 389090 393736 1049071 1053717 CM091759.1 scf7180000184273 99.63 True local misassembly 394293 397267 1054276 1057250 CM091759.1 scf7180000184273 99.83 True indel: indel (<= 5bp) 397268 399900 1057252 1059884 CM091759.1 scf7180000184273 99.73 True indel: indel (> 5bp) 399907 400984 1059885 1060962 CM091759.1 scf7180000184273 99.72 True indel: indel (<= 5bp) 401357 402498 1061337 1062478 CM091759.1 scf7180000184273 99.56 True indel: stretch of mismatches 402972 404808 1062952 1064788 CM091759.1 scf7180000184273 99.84 True indel: indel (<= 5bp) 404810 407228 1064789 1067207 CM091759.1 scf7180000184273 99.79 True indel: indel (<= 5bp) 407299 410066 1067275 1070042 CM091759.1 scf7180000184273 99.75 True indel: indel (<= 5bp) 410067 410911 1070044 1070888 CM091759.1 scf7180000184273 100.0 True indel: indel (<= 5bp) 410913 414429 1070889 1074405 CM091759.1 scf7180000184273 99.66 True local misassembly 414620 493443 1074739 1153305 CM091759.1 scf7180000184273 99.21 True fake: scaffold gap size wrong estimation (local) 494233 515093 1153688 1174299 CM091759.1 scf7180000184273 98.24 True fake: scaffold gap size wrong estimation (local) 515340 631927 1174523 1286383 CM091759.1 scf7180000184273 95.29 True fake: scaffold gap size wrong estimation (local) 632329 731076 1286617 1385408 CM091759.1 scf7180000184273 99.4 True fake: scaffold gap size wrong estimation (local) 731278 902699 1385780 1555922 CM091759.1 scf7180000184273 98.79 True fake: scaffold gap size wrong estimation (local) 902970 912259 1556020 1565235 CM091759.1 scf7180000184273 98.47 True indel: indel (> 5bp) 912362 1191648 1565279 1844863 CM091759.1 scf7180000184273 99.51 True indel: indel (<= 5bp) 1191703 1385756 1844916 2038939 CM091759.1 scf7180000184273 99.41 True fake: scaffold gap size wrong estimation (local) 1385876 1504927 2039056 2158167 CM091759.1 scf7180000184273 99.54 True fake: scaffold gap size wrong estimation (local) 1505220 1554333 2158555 2207688 CM091759.1 scf7180000184273 99.48 True fake: scaffold gap size wrong estimation (local) 1555140 1581857 2208265 2234921 CM091759.1 scf7180000184273 99.16 True indel: stretch of mismatches 1581872 1615438 2234936 2268427 CM091759.1 scf7180000184273 98.77 True indel: indel (<= 5bp) 1615592 1673387 2268584 2325708 CM091759.1 scf7180000184273 98.41 True fake: not a misassembly (possible transposable element) 5800174 5800681 2326790 2326283 CM091767.1 scf7180000184273 99.41 True fake: not a misassembly (possible transposable element) 1674146 1839036 2327251 2491966 CM091759.1 scf7180000184273 99.65 True fake: scaffold gap size wrong estimation (local) 1839207 1864127 2492121 2516999 CM091759.1 scf7180000184273 99.7 True fake: scaffold gap size wrong estimation (local) 1864800 1903333 2517260 2555543 CM091759.1 scf7180000184273 98.94 True fake: scaffold gap size wrong estimation (local) 1904534 1913762 2556012 2565242 CM091759.1 scf7180000184273 99.89 True fake: scaffold gap size wrong estimation (local) 1913914 1914500 2565855 2566441 CM091759.1 scf7180000184273 99.66 True fake: scaffold gap size wrong estimation (local) 1914892 1931094 2566657 2582866 CM091759.1 scf7180000184273 99.72 True fake: scaffold gap size wrong estimation (local) 1931410 1932900 2582977 2584486 CM091759.1 scf7180000184273 99.46 True translocation 15728095 15728607 2584852 2585364 CM091757.1 scf7180000184273 99.03 True translocation, scaffold gap is present 7866947 7869497 2588068 2585385 CM091767.1 scf7180000184273 95.59 True translocation, scaffold gap is present 16334443 16335083 2588937 2588297 CM091757.1 scf7180000184273 99.84 True fake: scaffold gap size wrong estimation (local) 16331722 16332987 2591547 2590282 CM091757.1 scf7180000184273 99.68 True translocation, scaffold gap is present 7863065 7863759 2592277 2591583 CM091767.1 scf7180000184273 98.56 True fake: scaffold gap size wrong estimation (local) 7861361 7862732 2593747 2592376 CM091767.1 scf7180000184273 100.0 True translocation, scaffold gap is present 16329783 16331421 2595688 2594050 CM091757.1 scf7180000184273 100.0 True translocation 11303750 11304787 2596726 2595689 CM091765.1 scf7180000184273 99.91 True translocation, scaffold gap is present 7859585 7861034 2598196 2596747 CM091767.1 scf7180000184273 98.34 True local misassembly 7855231 7859130 2602096 2598197 CM091767.1 scf7180000184273 99.74 True indel: indel (<= 5bp) 7852926 7855230 2604402 2602098 CM091767.1 scf7180000184273 99.91 True fake: scaffold gap size wrong estimation (local) 7850840 7851951 2606385 2605274 CM091767.1 scf7180000184273 99.73 True fake: scaffold gap size wrong estimation (local) 7847314 7847912 2609519 2608921 CM091767.1 scf7180000184273 99.67 True fake: scaffold gap size wrong estimation (local) 7839782 7846557 2616458 2609859 CM091767.1 scf7180000184273 96.94 True fake: scaffold gap size wrong estimation (local) 7836622 7837964 2619205 2617863 CM091767.1 scf7180000184273 100.0 True fake: scaffold gap size wrong estimation (local) 7832319 7836395 2623559 2619401 CM091767.1 scf7180000184273 98.26 True fake: scaffold gap size wrong estimation (local) 7830424 7831007 2624746 2624163 CM091767.1 scf7180000184273 100.0 True fake: scaffold gap size wrong estimation (local) 7826277 7829025 2628956 2626222 CM091767.1 scf7180000184273 99.37 True fake: scaffold gap size wrong estimation (local) 7823365 7824376 2631319 2630308 CM091767.1 scf7180000184273 95.65 True indel: indel (<= 5bp) 7822617 7823304 2632064 2631377 CM091767.1 scf7180000184273 98.11 True fake: scaffold gap size wrong estimation (local) 7814299 7820381 2639971 2633888 CM091767.1 scf7180000184273 99.92 True translocation, scaffold gap is present 10816126 10816742 2648508 2647892 CM091765.1 scf7180000184273 99.51 True translocation, scaffold gap is present 54174 56669 2651683 2649188 CM091753.1 scf7180000184273 99.12 True fake: scaffold gap size wrong estimation (local) 52810 53656 2652682 2651836 CM091753.1 scf7180000184273 99.88 True fake: scaffold gap size wrong estimation (local) 51259 52516 2654227 2652970 CM091753.1 scf7180000184273 99.52 True translocation, scaffold gap is present 10815343 10815973 2654925 2654294 CM091765.1 scf7180000184273 99.84 True fake: scaffold gap size wrong estimation (local) 10813147 10815124 2657030 2655057 CM091765.1 scf7180000184273 98.62 True fake: scaffold gap size wrong estimation (local) 10808857 10811692 2662124 2659289 CM091765.1 scf7180000184273 100.0 True fake: scaffold gap size wrong estimation (local) 10805260 10808505 2666002 2662757 CM091765.1 scf7180000184273 99.97 True fake: scaffold gap size wrong estimation (local) 10803797 10804478 2667389 2666708 CM091765.1 scf7180000184273 100.0 True fake: scaffold gap size wrong estimation (local) 10797204 10803612 2673956 2667548 CM091765.1 scf7180000184273 99.92 True translocation, scaffold gap is present 15826123 15828416 2676639 2674342 CM091752.1 scf7180000184273 99.52 True translocation, scaffold gap is present 17298185 17299461 2676697 2677973 CM091751.1 scf7180000184273 100.0 True translocation, scaffold gap is present 1748527 1752278 2681771 2678024 CM091764.1 scf7180000184273 99.87 True translocation, scaffold gap is present 6357916 6358446 2683198 2682668 CM091768.1 scf7180000184273 97.36 True translocation, scaffold gap is present 15823837 15826062 2685480 2683249 CM091752.1 scf7180000184273 99.43 True translocation 11269393 11273501 2685481 2689596 CM091765.1 scf7180000184273 98.62 True translocation, scaffold gap is present 1742479 1745028 2692370 2689820 CM091764.1 scf7180000184273 99.92 True translocation, scaffold gap is present 10795639 10796522 2693778 2692895 CM091765.1 scf7180000184273 100.0 True fake: scaffold gap size wrong estimation (local) 10789973 10795157 2699487 2694303 CM091765.1 scf7180000184273 100.0 True translocation, scaffold gap is present 1736026 1738820 2702964 2700142 CM091764.1 scf7180000184273 99.71 True fake: scaffold gap size wrong estimation (local) 1730865 1735901 2708165 2703073 CM091764.1 scf7180000184273 97.09 True translocation, scaffold gap is present 6354607 6357887 2712378 2709104 CM091768.1 scf7180000184273 99.69 True translocation, scaffold gap is present 10783999 10788233 2717156 2712904 CM091765.1 scf7180000184273 99.98 True fake: scaffold gap size wrong estimation (local) 10780638 10783053 2720392 2717939 CM091765.1 scf7180000184273 99.88 True fake: scaffold gap size wrong estimation (local) 10778685 10779955 2722457 2721187 CM091765.1 scf7180000184273 99.92 True fake: scaffold gap size wrong estimation (local) 10777431 10778317 2723425 2722539 CM091765.1 scf7180000184273 100.0 True translocation, scaffold gap is present 13523081 13525482 2725848 2723446 CM091758.1 scf7180000184273 99.79 True fake: not a misassembly (possible transposable element) 17301405 17302216 2726226 2727037 CM091751.1 scf7180000184273 100.0 True fake: not a misassembly (possible transposable element) 13517526 13520260 2729888 2727154 CM091758.1 scf7180000184273 99.27 True local misassembly 13514620 13516158 2731784 2730246 CM091758.1 scf7180000184273 99.94 True indel: indel (<= 5bp) 13513370 13514619 2733035 2731786 CM091758.1 scf7180000184273 99.92 True indel: indel (<= 5bp) 13510009 13513369 2736397 2733037 CM091758.1 scf7180000184273 99.97 True indel: indel (<= 5bp) 13508394 13510007 2738011 2736398 CM091758.1 scf7180000184273 99.94 True translocation, scaffold gap is present 10775728 10776534 2741542 2740736 CM091765.1 scf7180000184273 100.0 True translocation, scaffold gap is present 13467473 13468033 2741595 2742159 CM091758.1 scf7180000184273 99.82 True relocation, scaffold gap is present, inconsistency = 36034 13504098 13505162 2743254 2742190 CM091758.1 scf7180000184273 100.0 True translocation, scaffold gap is present 9140149 9142023 2745164 2743281 CM091767.1 scf7180000184273 99.36 True indel: indel (<= 5bp) 9138509 9140012 2746804 2745305 CM091767.1 scf7180000184273 96.48 True translocation, scaffold gap is present 13499932 13501339 2748233 2746825 CM091758.1 scf7180000184273 99.93 True fake: scaffold gap size wrong estimation (local) 13493743 13498840 2754079 2748984 CM091758.1 scf7180000184273 99.9 True translocation, scaffold gap is present 10982307 10998385 2754159 2770235 CM091765.1 scf7180000184273 99.88 True translocation, scaffold gap is present 47920 49625 2771996 2770286 CM091753.1 scf7180000184273 97.25 True translocation 9136248 9136894 2772643 2771997 CM091767.1 scf7180000184273 98.26 True translocation, scaffold gap is present 10998593 11001403 2772694 2775516 CM091765.1 scf7180000184273 99.36 True fake: scaffold gap size wrong estimation (local) 11002148 11004060 2776506 2778418 CM091765.1 scf7180000184273 99.95 True fake: scaffold gap size wrong estimation (local) 11008267 11011102 2782454 2785289 CM091765.1 scf7180000184273 99.96 True translocation, scaffold gap is present 17304100 17305756 2785363 2787019 CM091751.1 scf7180000184273 99.64 True fake: scaffold gap size wrong estimation (local) 17305901 17309307 2787103 2790510 CM091751.1 scf7180000184273 99.82 True translocation, scaffold gap is present 6350729 6351513 2792777 2791996 CM091768.1 scf7180000184273 99.61 True translocation, scaffold gap is present 11273614 11274145 2793208 2793740 CM091765.1 scf7180000184273 99.81 True translocation, scaffold gap is present 8406370 8407428 2794888 2793798 CM091767.1 scf7180000184273 98.88 True translocation, scaffold gap is present 16294012 16294992 2796143 2795182 CM091752.1 scf7180000184273 96.19 True local misassembly 16295027 16296182 2797365 2796210 CM091752.1 scf7180000184273 99.48 True translocation, scaffold gap is present 8384977 8385997 2798476 2797459 CM091767.1 scf7180000184273 99.51 True relocation, scaffold gap is present, inconsistency = -20186 8401663 8405112 2802001 2798527 CM091767.1 scf7180000184273 99.65 True translocation, scaffold gap is present 16292156 16293113 2803018 2802064 CM091752.1 scf7180000184273 98.85 True fake: scaffold gap size wrong estimation (local) 16290647 16291561 2804637 2803721 CM091752.1 scf7180000184273 98.7 True translocation, scaffold gap is present 8400704 8401280 2805264 2804688 CM091767.1 scf7180000184273 100.0 True translocation, scaffold gap is present 6368346 6369828 2805315 2806803 CM091768.1 scf7180000184273 99.32 True translocation, scaffold gap is present 16286494 16290067 2810446 2806854 CM091752.1 scf7180000184273 99.22 True fake: not a misassembly (possible transposable element) 8397964 8400675 2813178 2810467 CM091767.1 scf7180000184273 99.78 True fake: not a misassembly (possible transposable element) 16285036 16285971 2814164 2813229 CM091752.1 scf7180000184273 99.89 True translocation, scaffold gap is present 8396541 8397814 2815871 2814598 CM091767.1 scf7180000184273 99.92 True fake: not a misassembly (possible transposable element) 6369868 6372093 2816311 2818537 CM091768.1 scf7180000184273 99.19 True fake: not a misassembly (possible transposable element) 8392966 8396078 2822428 2819324 CM091767.1 scf7180000184273 99.24 True fake: not a misassembly (possible transposable element) 2883426 2884130 2823674 2822970 CM091762.1 scf7180000184273 99.72 True fake: not a misassembly (possible transposable element) 8390554 8391615 2825546 2824475 CM091767.1 scf7180000184273 97.7 True fake: not a misassembly (possible transposable element) 1591942 1593943 2825674 2827678 CM091764.1 scf7180000184273 98.05 True fake: not a misassembly (possible transposable element) 8383132 8383997 2828985 2828118 CM091767.1 scf7180000184273 99.57 True translocation 2001650 2005105 2832446 2828986 CM091764.1 scf7180000184273 99.74 True translocation, scaffold gap is present 8135031 8138604 2836083 2832481 CM091767.1 scf7180000184273 99.69 True fake: scaffold gap size wrong estimation (local) 8131651 8133834 2838742 2836585 CM091767.1 scf7180000184273 98.46 True fake: scaffold gap size wrong estimation (local) 8130227 8131407 2840102 2838922 CM091767.1 scf7180000184273 99.92 True fake: scaffold gap size wrong estimation (local) 8128086 8129704 2842075 2840480 CM091767.1 scf7180000184273 97.53 True fake: scaffold gap size wrong estimation (local) 8123725 8127124 2846208 2842809 CM091767.1 scf7180000184273 99.97 True relocation, scaffold gap is present, inconsistency = -266003 8387172 8389665 2848840 2846271 CM091767.1 scf7180000184273 97.25 True fake: scaffold gap size wrong estimation (local) 8385954 8386509 2850835 2850280 CM091767.1 scf7180000184273 97.15 True relocation, inconsistency = 264194 8116290 8121759 2856293 2850836 CM091767.1 scf7180000184273 99.71 True fake: scaffold gap size wrong estimation (local) 8114080 8115138 2858375 2857317 CM091767.1 scf7180000184273 99.91 True fake: scaffold gap size wrong estimation (local) 8110546 8111409 2861692 2860829 CM091767.1 scf7180000184273 100.0 True fake: scaffold gap size wrong estimation (local) 8107405 8110144 2865001 2862262 CM091767.1 scf7180000184273 99.96 True fake: not a misassembly (possible transposable element) 2036932 2038478 2867014 2865468 CM091764.1 scf7180000184273 99.94 True fake: not a misassembly (possible transposable element) 8105095 8106741 2868782 2867136 CM091767.1 scf7180000184273 100.0 True translocation, scaffold gap is present 13297654 13298415 2869316 2870077 CM091758.1 scf7180000184273 99.87 True translocation, scaffold gap is present 2032320 2036126 2875022 2871189 CM091764.1 scf7180000184273 99.66 True translocation, scaffold gap is present 11280620 11285821 2875072 2880100 CM091765.1 scf7180000184273 95.71 True fake: scaffold gap size wrong estimation (local) 11286728 11290118 2880724 2884103 CM091765.1 scf7180000184273 99.17 True fake: scaffold gap size wrong estimation (local) 11290273 11290893 2884232 2884852 CM091765.1 scf7180000184273 100.0 True translocation, scaffold gap is present 13300691 13302628 2885599 2887536 CM091758.1 scf7180000184273 99.9 True translocation, scaffold gap is present 29360 30944 2887861 2889444 CM091755.1 scf7180000184273 98.99 True fake: not a misassembly (possible transposable element) 2031207 2031771 2890307 2889743 CM091764.1 scf7180000184273 100.0 True fake: not a misassembly (possible transposable element) 31337 31969 2890453 2891085 CM091755.1 scf7180000184273 96.84 True translocation, scaffold gap is present 2025588 2026474 2892024 2891145 CM091764.1 scf7180000184273 95.05 True relocation, scaffold gap is present, inconsistency = 33179 1989672 1990391 2894761 2894042 CM091764.1 scf7180000184273 97.78 True translocation, scaffold gap is present 11159983 11160540 2894789 2895346 CM091765.1 scf7180000184273 99.1 True fake: not a misassembly (possible transposable element) 17309329 17310561 2895398 2896593 CM091751.1 scf7180000184273 96.78 True fake: not a misassembly (possible transposable element) 11158634 11159365 2896643 2897375 CM091765.1 scf7180000184273 99.86 True fake: not a misassembly (possible transposable element) 16871706 16875551 2897440 2901437 CM091756.1 scf7180000184273 95.43 True fake: not a misassembly (possible transposable element) 11160963 11161785 2901487 2902310 CM091765.1 scf7180000184273 99.76 True fake: scaffold gap size wrong estimation (local) 11163874 11164936 2904371 2905433 CM091765.1 scf7180000184273 99.91 True translocation, scaffold gap is present 15447726 15448993 2905502 2906769 CM091752.1 scf7180000184273 99.84 True translocation 16875916 16876884 2906770 2907738 CM091756.1 scf7180000184273 98.7 True translocation, scaffold gap is present 11155357 11156057 2913166 2912466 CM091765.1 scf7180000184273 99.0 True translocation, scaffold gap is present 1990445 1991150 2914942 2914240 CM091764.1 scf7180000184273 96.6 True translocation, scaffold gap is present 4735576 4737338 2917346 2915560 CM091768.1 scf7180000184273 99.66 True translocation, scaffold gap is present 2094808 2096561 2919150 2917397 CM091764.1 scf7180000184273 100.0 True fake: scaffold gap size wrong estimation (local) 2093066 2094299 2920630 2919395 CM091764.1 scf7180000184273 99.41 True fake: scaffold gap size wrong estimation (local) 2087435 2092321 2925600 2920932 CM091764.1 scf7180000184273 95.27 True fake: scaffold gap size wrong estimation (local) 2085522 2086611 2927309 2926220 CM091764.1 scf7180000184273 98.17 True indel: indel (> 5bp) 2084087 2085346 2928679 2927420 CM091764.1 scf7180000184273 100.0 True fake: scaffold gap size wrong estimation (local) 2081083 2083797 2933274 2930560 CM091764.1 scf7180000184273 98.42 True fake: scaffold gap size wrong estimation (local) 2071982 2078496 2941986 2935401 CM091764.1 scf7180000184273 98.81 True translocation, scaffold gap is present 4732537 4735005 2944505 2942037 CM091768.1 scf7180000184273 99.84 True relocation, scaffold gap is present, inconsistency = 23345 4761704 4762778 2947859 2948941 CM091768.1 scf7180000184273 99.9 True fake: scaffold gap size wrong estimation (local) 4763348 4764972 2949678 2951302 CM091768.1 scf7180000184273 99.88 True fake: scaffold gap size wrong estimation (local) 4765865 4768242 2952440 2954817 CM091768.1 scf7180000184273 100.0 True fake: scaffold gap size wrong estimation (local) 4769575 4770243 2959553 2960221 CM091768.1 scf7180000184273 98.49 True translocation 3380909 3386398 2965700 2960222 CM091752.1 scf7180000184273 97.91 True fake: scaffold gap size wrong estimation (local) 3380249 3381120 2967339 2966468 CM091752.1 scf7180000184273 95.3 True local misassembly 3378573 3379277 2969011 2968307 CM091752.1 scf7180000184273 96.45 True local misassembly 3377513 3378367 2969866 2969012 CM091752.1 scf7180000184273 99.3 True relocation, scaffold gap is present, inconsistency = 368150 3006021 3007179 2972050 2973177 CM091752.1 scf7180000184273 97.1 True fake: not a misassembly (possible transposable element) 3047872 3049081 2973226 2974453 CM091752.1 scf7180000184273 99.75 True fake: not a misassembly (possible transposable element) 3007305 3008340 2974510 2975545 CM091752.1 scf7180000184273 100.0 True fake: not a misassembly (possible transposable element) 11143474 11148754 2980862 2975582 CM091765.1 scf7180000184273 99.98 True fake: not a misassembly (possible transposable element) 3009065 3012927 2981413 2985314 CM091752.1 scf7180000184273 99.46 True translocation, scaffold gap is present 16060690 16061636 2986626 2985659 CM091757.1 scf7180000184273 99.89 True translocation, scaffold gap is present 11139911 11142555 2989319 2986675 CM091765.1 scf7180000184273 99.96 True translocation, scaffold gap is present 3014425 3014965 2989390 2989930 CM091752.1 scf7180000184273 98.12 True translocation 16058668 16060748 2992029 2989931 CM091757.1 scf7180000184273 97.31 True fake: scaffold gap size wrong estimation (local) 16052015 16053689 2998657 2996979 CM091757.1 scf7180000184273 100.0 True translocation, scaffold gap is present 3019979 3023716 2998678 3002333 CM091752.1 scf7180000184273 96.85 True fake: scaffold gap size wrong estimation (local) 3024335 3025911 3004572 3006221 CM091752.1 scf7180000184273 95.89 True translocation, scaffold gap is present 16047634 16048485 3007125 3006274 CM091757.1 scf7180000184273 98.47 True translocation, scaffold gap is present 1374674 1375309 3007809 3007174 CM091764.1 scf7180000184273 99.69 True translocation, scaffold gap is present 3027125 3028246 3008337 3009458 CM091752.1 scf7180000184273 95.45 True translocation, scaffold gap is present 16032851 16047361 3023912 3009511 CM091757.1 scf7180000184273 97.91 True translocation 11387465 11388663 3023913 3025095 CM091765.1 scf7180000184273 96.53 True translocation, scaffold gap is present 8756117 8756966 3025116 3025965 CM091767.1 scf7180000184273 100.0 True fake: scaffold gap size wrong estimation (local) 8757920 8766226 3027415 3035610 CM091767.1 scf7180000184273 98.21 True translocation, scaffold gap is present 16031919 16032928 3036668 3035659 CM091757.1 scf7180000184273 97.92 True local misassembly 16029852 16031267 3038084 3036669 CM091757.1 scf7180000184273 100.0 True fake: scaffold gap size wrong estimation (local) 16028738 16029851 3039228 3038115 CM091757.1 scf7180000184273 98.47 True indel: indel (> 5bp) 16027755 16028737 3040217 3039235 CM091757.1 scf7180000184273 99.29 True fake: scaffold gap size wrong estimation (local) 16026675 16027487 3041315 3040503 CM091757.1 scf7180000184273 97.29 True local misassembly 16024702 16026339 3042953 3041316 CM091757.1 scf7180000184273 99.82 True fake: scaffold gap size wrong estimation (local) 16023162 16024701 3044511 3042972 CM091757.1 scf7180000184273 99.94 True indel: indel (> 5bp) 16021978 16023004 3045694 3044658 CM091757.1 scf7180000184273 99.28 True relocation, scaffold gap is present, inconsistency = -201376 16222259 16222895 3046789 3046153 CM091757.1 scf7180000184273 100.0 True translocation, scaffold gap is present 4043807 4044379 3047380 3046810 CM091752.1 scf7180000184273 99.13 True translocation, scaffold gap is present 8769870 8770701 3047444 3048275 CM091767.1 scf7180000184273 99.88 True local misassembly 8771843 8778053 3048418 3054628 CM091767.1 scf7180000184273 99.52 True fake: scaffold gap size wrong estimation (local) 8777924 8778635 3056348 3057059 CM091767.1 scf7180000184273 99.86 True fake: scaffold gap size wrong estimation (local) 8782410 8782976 3060748 3061319 CM091767.1 scf7180000184273 98.43 True translocation, scaffold gap is present 3030725 3031634 3062648 3063557 CM091752.1 scf7180000184273 100.0 True translocation, scaffold gap is present 15505474 15505977 3063608 3064111 CM091757.1 scf7180000184273 100.0 True translocation, scaffold gap is present 4047914 4048451 3064698 3064161 CM091752.1 scf7180000184273 100.0 True local misassembly 4049317 4049847 3065718 3065188 CM091752.1 scf7180000184273 99.81 True fake: not a misassembly (possible transposable element) 15504426 15505155 3065739 3066467 CM091757.1 scf7180000184273 99.73 True fake: not a misassembly (possible transposable element) 4046424 4047566 3067636 3066494 CM091752.1 scf7180000184273 100.0 True translocation, scaffold gap is present 15506830 15507852 3067657 3068677 CM091757.1 scf7180000184273 98.73 True fake: not a misassembly (possible transposable element) 142721 146180 3072187 3068728 CM091761.1 scf7180000184273 100.0 True fake: not a misassembly (possible transposable element) 15508926 15510666 3072238 3073942 CM091757.1 scf7180000184273 96.95 True fake: scaffold gap size wrong estimation (local) 15510948 15511670 3074465 3075188 CM091757.1 scf7180000184273 98.9 True relocation, scaffold gap is present, inconsistency = 702516 16216231 16217348 3078350 3077233 CM091757.1 scf7180000184273 95.35 True local misassembly 16215544 16216121 3078928 3078351 CM091757.1 scf7180000184273 100.0 True fake: scaffold gap size wrong estimation (local) 16211483 16215455 3083022 3079035 CM091757.1 scf7180000184273 99.9 True fake: scaffold gap size wrong estimation (local) 16209276 16210951 3084972 3083291 CM091757.1 scf7180000184273 99.01 True fake: not a misassembly (possible transposable element) 3031974 3036599 3085023 3089647 CM091752.1 scf7180000184273 99.87 True fake: not a misassembly (possible transposable element) 16207823 16208374 3090301 3089763 CM091757.1 scf7180000184273 97.37 True translocation, scaffold gap is present 3036863 3037416 3090966 3091519 CM091752.1 scf7180000184273 100.0 True fake: not a misassembly (possible transposable element) 141056 141725 3092213 3091570 CM091761.1 scf7180000184273 95.54 True fake: not a misassembly (possible transposable element) 3038655 3039286 3092347 3092979 CM091752.1 scf7180000184273 99.84 True translocation, scaffold gap is present 139580 140190 3093686 3093077 CM091761.1 scf7180000184273 99.84 True translocation, scaffold gap is present 11657 12831 3093707 3094881 CM091752.1 scf7180000184273 100.0 True translocation, scaffold gap is present 11131344 11134273 3097902 3094932 CM091765.1 scf7180000184273 98.41 True translocation, scaffold gap is present 3040125 3041601 3098054 3099531 CM091752.1 scf7180000184273 99.8 True relocation, scaffold gap is present, inconsistency = -3029216 13703 14353 3100849 3101498 CM091752.1 scf7180000184273 99.54 True fake: scaffold gap size wrong estimation (local) 15830 16900 3101527 3102562 CM091752.1 scf7180000184273 95.52 True relocation, scaffold gap is present, inconsistency = 3027189 3045389 3047765 3103862 3106224 CM091752.1 scf7180000184273 99.35 True translocation, scaffold gap is present 127905 138462 3116803 3106279 CM091761.1 scf7180000184273 99.58 True translocation, scaffold gap is present 15465468 15466389 3117586 3118507 CM091752.1 scf7180000184273 99.78 True fake: not a misassembly (possible transposable element) 11129357 11129882 3119082 3118558 CM091765.1 scf7180000184273 99.62 True fake: not a misassembly (possible transposable element) 15468124 15468878 3119432 3120186 CM091752.1 scf7180000184273 100.0 True relocation, scaffold gap is present, inconsistency = 1258383 16727313 16728238 3120238 3121165 CM091752.1 scf7180000184273 98.38 True translocation, scaffold gap is present 11120466 11128161 3128867 3121222 CM091765.1 scf7180000184273 99.23 True fake: not a misassembly (possible transposable element) 15467173 15468124 3128918 3129869 CM091752.1 scf7180000184273 100.0 True fake: not a misassembly (possible transposable element) 11118922 11120599 3131820 3130142 CM091765.1 scf7180000184273 99.88 True translocation, scaffold gap is present 15469228 15470224 3131898 3132893 CM091752.1 scf7180000184273 99.9 True fake: scaffold gap size wrong estimation (local) 15471076 15476190 3133411 3138525 CM091752.1 scf7180000184273 99.78 True indel: indel (> 5bp) 15476191 15478397 3138552 3140758 CM091752.1 scf7180000184273 99.68 True fake: scaffold gap size wrong estimation (local) 15478398 15479396 3141199 3142197 CM091752.1 scf7180000184273 99.8 True fake: not a misassembly (possible transposable element) 11116761 11118321 3144598 3143038 CM091765.1 scf7180000184273 99.81 True fake: not a misassembly (possible transposable element) 15480644 15481335 3144927 3145618 CM091752.1 scf7180000184273 95.52 True indel: indel (<= 5bp) 15481337 15482081 3145619 3146363 CM091752.1 scf7180000184273 99.79 True relocation, inconsistency = 980957 16463039 16465731 3149056 3146364 CM091752.1 scf7180000184273 97.55 True local misassembly 16462190 16463038 3150048 3149200 CM091752.1 scf7180000184273 99.76 True fake: scaffold gap size wrong estimation (local) 16458438 16461715 3154763 3151485 CM091752.1 scf7180000184273 99.48 True translocation, scaffold gap is present 11114014 11116079 3156898 3154833 CM091765.1 scf7180000184273 98.89 True local misassembly 11111704 11113640 3158835 3156899 CM091765.1 scf7180000184273 99.74 True fake: scaffold gap size wrong estimation (local) 11108195 11109544 3160700 3159351 CM091765.1 scf7180000184273 98.44 True local misassembly 11106430 11107168 3161439 3160701 CM091765.1 scf7180000184273 99.86 True translocation, scaffold gap is present 16456699 16458449 3163239 3161490 CM091752.1 scf7180000184273 99.89 True translocation, scaffold gap is present 8828899 8829830 3165127 3164196 CM091767.1 scf7180000184273 100.0 True fake: scaffold gap size wrong estimation (local) 8828305 8828898 3166157 3165564 CM091767.1 scf7180000184273 98.82 True translocation, scaffold gap is present 17312072 17312625 3166507 3167061 CM091751.1 scf7180000184273 99.1 True translocation, scaffold gap is present 9397972 9398874 3168521 3167622 CM091752.1 scf7180000184273 99.0 True relocation, scaffold gap is present, inconsistency = -5304033 14699623 14700494 3170903 3170032 CM091752.1 scf7180000184273 100.0 True relocation, scaffold gap is present, inconsistency = 11326725 3371049 3372481 3172753 3171320 CM091752.1 scf7180000184273 96.03 True fake: not a misassembly (possible transposable element) 1929657 1930462 3173559 3172754 CM091764.1 scf7180000184273 99.88 True fake: not a misassembly (possible transposable element) 3369619 3370292 3177483 3176811 CM091752.1 scf7180000184273 98.81 True translocation, scaffold gap is present 8824001 8826569 3180109 3177522 CM091767.1 scf7180000184273 99.77 True fake: scaffold gap size wrong estimation (local) 8822039 8823232 3181793 3180609 CM091767.1 scf7180000184273 99.08 True fake: not a misassembly (possible transposable element) 3366752 3369408 3184500 3181844 CM091752.1 scf7180000184273 99.77 True fake: not a misassembly (possible transposable element) 8819115 8820520 3186745 3185340 CM091767.1 scf7180000184273 99.93 True translocation, scaffold gap is present 4328695 4329416 3186796 3187517 CM091754.1 scf7180000184273 99.72 True translocation, scaffold gap is present 9406289 9408676 3188082 3190469 CM091767.1 scf7180000184273 99.71 True translocation, scaffold gap is present 11485621 11486408 3191740 3192527 CM091765.1 scf7180000184273 99.72 True translocation 9347306 9349711 3194933 3192528 CM091767.1 scf7180000184273 99.5 True translocation, scaffold gap is present 17313922 17315422 3195004 3196504 CM091751.1 scf7180000184273 99.8 True translocation, scaffold gap is present 11487186 11488815 3197111 3198740 CM091765.1 scf7180000184273 99.51 True local misassembly 11489306 11491623 3198741 3201058 CM091765.1 scf7180000184273 97.66 True relocation, inconsistency = -1072980 10418644 10424785 3201059 3207200 CM091765.1 scf7180000184273 99.9 True local misassembly 10425257 10426896 3207251 3208890 CM091765.1 scf7180000184273 99.82 True fake: scaffold gap size wrong estimation (local) 10427565 10431750 3210707 3214885 CM091765.1 scf7180000184273 99.76 True fake: scaffold gap size wrong estimation (local) 10432414 10464388 3215456 3247332 CM091765.1 scf7180000184273 97.1 True fake: scaffold gap size wrong estimation (local) 10464509 10465349 3247458 3248304 CM091765.1 scf7180000184273 95.19 True translocation, scaffold gap is present 1926572 1928000 3249763 3248334 CM091764.1 scf7180000184273 99.04 True translocation 10623248 10624950 3249764 3251466 CM091765.1 scf7180000184273 99.94 True relocation, scaffold gap is present, inconsistency = -159251 10465757 10466571 3251524 3252353 CM091765.1 scf7180000184273 98.64 True translocation, scaffold gap is present 4333729 4334306 3252374 3252951 CM091754.1 scf7180000184273 98.44 True translocation, scaffold gap is present 6359627 6360677 3254053 3253003 CM091768.1 scf7180000184273 98.95 True fake: not a misassembly (possible transposable element) 10466563 10467171 3254349 3254957 CM091765.1 scf7180000184273 99.84 True fake: not a misassembly (possible transposable element) 6358861 6359471 3256465 3255855 CM091768.1 scf7180000184273 99.67 True translocation, scaffold gap is present 651780 654196 3259119 3256703 CM091760.1 scf7180000184273 99.92 True fake: scaffold gap size wrong estimation (local) 650166 650730 3260711 3260147 CM091760.1 scf7180000184273 99.65 True translocation, scaffold gap is present 1920947 1921516 3263031 3262475 CM091764.1 scf7180000184273 97.54 True fake: scaffold gap size wrong estimation (local) 1910978 1913951 3267616 3264643 CM091764.1 scf7180000184273 99.83 True fake: not a misassembly (possible transposable element) 643240 648596 3273054 3267698 CM091760.1 scf7180000184273 99.96 True fake: not a misassembly (possible transposable element) 1910306 1910967 3273772 3273111 CM091764.1 scf7180000184273 99.85 True fake: scaffold gap size wrong estimation (local) 1909479 1910305 3274903 3274077 CM091764.1 scf7180000184273 100.0 True indel: indel (<= 5bp) 1908846 1909476 3275534 3274904 CM091764.1 scf7180000184273 99.84 True translocation, scaffold gap is present 640327 642267 3277542 3275602 CM091760.1 scf7180000184273 99.85 True fake: scaffold gap size wrong estimation (local) 632185 640281 3288785 3280689 CM091760.1 scf7180000184273 100.0 True indel: indel (<= 5bp) 619349 632180 3301617 3288786 CM091760.1 scf7180000184273 100.0 True fake: scaffold gap size wrong estimation (local) 618175 619348 3302815 3301642 CM091760.1 scf7180000184273 100.0 True fake: scaffold gap size wrong estimation (local) 607356 617677 3313662 3303341 CM091760.1 scf7180000184273 99.96 True indel: indel (<= 5bp) 601284 607354 3319733 3313663 CM091760.1 scf7180000184273 100.0 True indel: indel (<= 5bp) 599456 601282 3321560 3319734 CM091760.1 scf7180000184273 99.95 True indel: indel (> 5bp) 598039 599449 3322971 3321561 CM091760.1 scf7180000184273 100.0 True fake: scaffold gap size wrong estimation (local) 539743 597401 3380748 3323307 CM091760.1 scf7180000184273 99.51 True indel: indel (> 5bp) 477447 539494 3442833 3381009 CM091760.1 scf7180000184273 99.54 True fake: scaffold gap size wrong estimation (local) 474841 476447 3444900 3443294 CM091760.1 scf7180000184273 99.94 True fake: scaffold gap size wrong estimation (local) 445912 474599 3473683 3444999 CM091760.1 scf7180000184273 99.9 True fake: scaffold gap size wrong estimation (local) 436286 445780 3483269 3473775 CM091760.1 scf7180000184273 99.92 True fake: scaffold gap size wrong estimation (local) 418407 434606 3500649 3484662 CM091760.1 scf7180000184273 98.52 True translocation 8782961 8792454 3500650 3510153 CM091767.1 scf7180000184273 99.2 True translocation, scaffold gap is present 1694202 1695265 3510677 3511740 CM091764.1 scf7180000184273 98.97 True fake: scaffold gap size wrong estimation (local) 1696492 1697390 3512884 3513782 CM091764.1 scf7180000184273 100.0 True fake: scaffold gap size wrong estimation (local) 1697359 1697959 3516086 3516688 CM091764.1 scf7180000184273 99.67 True translocation, scaffold gap is present 15503937 15504701 3518032 3517268 CM091752.1 scf7180000184273 99.48 True fake: scaffold gap size wrong estimation (local) 15501737 15503440 3520586 3518883 CM091752.1 scf7180000184273 99.59 True fake: scaffold gap size wrong estimation (local) 15498449 15501135 3523328 3520642 CM091752.1 scf7180000184273 99.81 True indel: indel (<= 5bp) 15496690 15498448 3525089 3523331 CM091752.1 scf7180000184273 99.89 True fake: scaffold gap size wrong estimation (local) 15492799 15496028 3528960 3525726 CM091752.1 scf7180000184273 99.2 True fake: scaffold gap size wrong estimation (local) 15486990 15491638 3535130 3530602 CM091752.1 scf7180000184273 96.58 True fake: scaffold gap size wrong estimation (local) 15484746 15485706 3536441 3535505 CM091752.1 scf7180000184273 96.85 True fake: scaffold gap size wrong estimation (local) 15482520 15483822 3539007 3537705 CM091752.1 scf7180000184273 99.62 True relocation, scaffold gap is present, inconsistency = 981507 16467319 16468455 3540997 3542133 CM091752.1 scf7180000184273 97.19 True fake: scaffold gap size wrong estimation (local) 16469030 16473692 3542780 3547459 CM091752.1 scf7180000184273 97.87 True fake: scaffold gap size wrong estimation (local) 16474819 16475652 3548312 3549144 CM091752.1 scf7180000184273 98.44 True local misassembly 16473775 16474427 3549165 3549817 CM091752.1 scf7180000184273 99.54 True translocation, scaffold gap is present 1643804 1648899 3549840 3554939 CM091764.1 scf7180000184273 99.08 True fake: scaffold gap size wrong estimation (local) 1652291 1653528 3557655 3558892 CM091764.1 scf7180000184273 99.68 True fake: scaffold gap size wrong estimation (local) 1653594 1655409 3559121 3560936 CM091764.1 scf7180000184273 99.78 True fake: not a misassembly (possible transposable element) 8642341 8643097 3560998 3561754 CM091767.1 scf7180000184273 99.6 True fake: not a misassembly (possible transposable element) 1656612 1657527 3562749 3563664 CM091764.1 scf7180000184273 99.67 True translocation, scaffold gap is present 8644477 8651278 3563702 3570487 CM091767.1 scf7180000184273 99.66 True fake: scaffold gap size wrong estimation (local) 8653705 8656604 3572869 3575768 CM091767.1 scf7180000184273 98.83 True fake: scaffold gap size wrong estimation (local) 8656606 8659054 3577604 3580051 CM091767.1 scf7180000184273 99.35 True fake: scaffold gap size wrong estimation (local) 8660059 8662463 3581472 3583874 CM091767.1 scf7180000184273 99.17 True fake: scaffold gap size wrong estimation (local) 8664054 8665247 3584147 3585355 CM091767.1 scf7180000184273 98.18 True relocation, scaffold gap is present, inconsistency = 177494 8843397 8844756 3586011 3587371 CM091767.1 scf7180000184273 95.44 True translocation, scaffold gap is present 11411363 11412076 3590176 3590889 CM091765.1 scf7180000184273 99.86 True translocation, scaffold gap is present 8483775 8484868 3591328 3592431 CM091767.1 scf7180000184273 99.72 True fake: not a misassembly (possible transposable element) 4030735 4031367 3592495 3593127 CM091752.1 scf7180000184273 100.0 True fake: not a misassembly (possible transposable element) 8485561 8486808 3595381 3596629 CM091767.1 scf7180000184273 99.36 True translocation, scaffold gap is present 16481918 16482420 3610337 3610839 CM091752.1 scf7180000184273 98.41 True fake: scaffold gap size wrong estimation (local) 16483355 16485270 3611653 3613598 CM091752.1 scf7180000184273 99.12 True fake: not a misassembly (possible transposable element) 16841825 16842544 3615252 3614533 CM091756.1 scf7180000184273 99.72 True fake: not a misassembly (possible transposable element) 16486224 16488087 3615307 3617197 CM091752.1 scf7180000184273 97.81 True fake: scaffold gap size wrong estimation (local) 16488706 16490834 3617825 3620018 CM091752.1 scf7180000184273 95.69 True fake: scaffold gap size wrong estimation (local) 16492112 16492705 3620688 3621280 CM091752.1 scf7180000184273 98.82 True translocation, scaffold gap is present 17517239 17520570 3624360 3627691 CM091751.1 scf7180000184273 99.97 True fake: scaffold gap size wrong estimation (local) 17521306 17523486 3628149 3630347 CM091751.1 scf7180000184273 100.0 True fake: scaffold gap size wrong estimation (local) 17525686 17526201 3631303 3631818 CM091751.1 scf7180000184273 99.81 True local misassembly 17526402 17526984 3631819 3632401 CM091751.1 scf7180000184273 96.4 True fake: scaffold gap size wrong estimation (local) 17527834 17528504 3633111 3633781 CM091751.1 scf7180000184273 100.0 True local misassembly 17528723 17529430 3633782 3634489 CM091751.1 scf7180000184273 96.89 True fake: scaffold gap size wrong estimation (local) 17529990 17531386 3634909 3636305 CM091751.1 scf7180000184273 100.0 True fake: scaffold gap size wrong estimation (local) 17532270 17534238 3637214 3639182 CM091751.1 scf7180000184273 99.95 True CONTIG scf7180000184273 3639182 misassembled 4769152 4876141 1 106985 CM091761.1 scf7180000184274 99.54 True fake: scaffold gap size wrong estimation (local) 4876353 4895912 107628 127184 CM091761.1 scf7180000184274 99.56 True fake: scaffold gap size wrong estimation (local) 4895921 4896941 127718 128738 CM091761.1 scf7180000184274 99.51 True indel: indel (<= 5bp) 4896966 4902525 128766 134306 CM091761.1 scf7180000184274 99.23 True fake: scaffold gap size wrong estimation (local) 4902706 4922795 134454 154584 CM091761.1 scf7180000184274 99.04 True fake: scaffold gap size wrong estimation (local) 4922876 4973839 155046 205792 CM091761.1 scf7180000184274 98.79 True fake: scaffold gap size wrong estimation (local) 4973918 4987532 206014 219366 CM091761.1 scf7180000184274 97.27 True fake: scaffold gap size wrong estimation (local) 4988266 4992667 219626 223993 CM091761.1 scf7180000184274 98.68 True fake: scaffold gap size wrong estimation (local) 4993272 5004564 224266 235247 CM091761.1 scf7180000184274 96.32 True fake: scaffold gap size wrong estimation (local) 5004901 5018848 235686 249698 CM091761.1 scf7180000184274 98.9 True fake: scaffold gap size wrong estimation (local) 5018973 5019792 249813 250638 CM091761.1 scf7180000184274 97.71 True fake: scaffold gap size wrong estimation (local) 5020575 5031384 250867 261662 CM091761.1 scf7180000184274 99.14 True fake: scaffold gap size wrong estimation (local) 5031686 5036476 261867 266633 CM091761.1 scf7180000184274 98.81 True fake: scaffold gap size wrong estimation (local) 5036966 5040491 266760 270280 CM091761.1 scf7180000184274 99.35 True fake: scaffold gap size wrong estimation (local) 5041112 5041667 270744 271299 CM091761.1 scf7180000184274 99.1 True local misassembly 5042040 5044479 271300 273739 CM091761.1 scf7180000184274 98.61 True fake: scaffold gap size wrong estimation (local) 5044480 5046454 273766 275740 CM091761.1 scf7180000184274 99.54 True fake: scaffold gap size wrong estimation (local) 5047705 5048713 276503 277511 CM091761.1 scf7180000184274 99.8 True indel: indel (<= 5bp) 5048714 5050213 277513 279012 CM091761.1 scf7180000184274 99.87 True indel: indel (<= 5bp) 5050214 5051461 279014 280261 CM091761.1 scf7180000184274 99.68 True fake: scaffold gap size wrong estimation (local) 5052321 5052868 281062 281609 CM091761.1 scf7180000184274 99.82 True indel: indel (> 5bp) 5053002 5053641 281752 282391 CM091761.1 scf7180000184274 99.84 True local misassembly 5053920 5054654 282392 283126 CM091761.1 scf7180000184274 99.18 True fake: scaffold gap size wrong estimation (local) 5055743 5056904 283851 285012 CM091761.1 scf7180000184274 98.97 True local misassembly 5057780 5059254 285876 287350 CM091761.1 scf7180000184274 99.73 True fake: scaffold gap size wrong estimation (local) 5060384 5061256 288133 289005 CM091761.1 scf7180000184274 99.54 True local misassembly 5062698 5064108 290440 291850 CM091761.1 scf7180000184274 98.94 True indel: indel (<= 5bp) 5064110 5064636 291851 292377 CM091761.1 scf7180000184274 99.43 True local misassembly 5064899 5065997 292378 293476 CM091761.1 scf7180000184274 97.82 True fake: scaffold gap size wrong estimation (local) 5067717 5068353 295089 295725 CM091761.1 scf7180000184274 97.33 True local misassembly 5069312 5071296 296688 298672 CM091761.1 scf7180000184274 98.99 True indel: indel (<= 5bp) 5071476 5072999 298850 300373 CM091761.1 scf7180000184274 99.54 True fake: scaffold gap size wrong estimation (local) 5073111 5075787 301458 304134 CM091761.1 scf7180000184274 99.4 True local misassembly 5076518 5077447 304906 305835 CM091761.1 scf7180000184274 98.17 True indel: indel (> 5bp) 5077462 5078172 305836 306546 CM091761.1 scf7180000184274 99.72 True indel: indel (<= 5bp) 5078174 5079182 306547 307555 CM091761.1 scf7180000184274 99.41 True indel: indel (<= 5bp) 5079187 5079888 307556 308257 CM091761.1 scf7180000184274 99.57 True fake: scaffold gap size wrong estimation (local) 5080897 5081734 308959 309796 CM091761.1 scf7180000184274 99.64 True indel: indel (<= 5bp) 5081737 5082370 309797 310430 CM091761.1 scf7180000184274 99.84 True indel: indel (<= 5bp) 5082442 5095455 310505 323518 CM091761.1 scf7180000184274 99.5 True fake: scaffold gap size wrong estimation (local) 5095707 5118071 323661 346046 CM091761.1 scf7180000184274 99.38 True fake: scaffold gap size wrong estimation (local) 5118196 5119365 346223 347392 CM091761.1 scf7180000184274 99.74 True fake: scaffold gap size wrong estimation (local) 5119961 5161747 347568 389100 CM091761.1 scf7180000184274 98.77 True local misassembly 5162079 5212513 389727 439922 CM091761.1 scf7180000184274 98.66 True fake: scaffold gap size wrong estimation (local) 5212990 5320271 440118 546873 CM091761.1 scf7180000184274 98.83 True fake: scaffold gap size wrong estimation (local) 5321199 5383514 547586 609831 CM091761.1 scf7180000184274 99.73 True fake: scaffold gap size wrong estimation (local) 5383868 5494381 609962 720346 CM091761.1 scf7180000184274 99.43 True fake: scaffold gap size wrong estimation (local) 5494712 5503936 720513 729754 CM091761.1 scf7180000184274 99.59 True indel: indel (> 5bp) 5503979 5642504 729786 868314 CM091761.1 scf7180000184274 99.4 True indel: indel (> 5bp) 5642629 5715161 868451 940998 CM091761.1 scf7180000184274 99.59 True fake: scaffold gap size wrong estimation (local) 5715479 5720894 941168 946582 CM091761.1 scf7180000184274 99.69 True CONTIG scf7180000184274 946582 correct 11677046 11766657 49 89497 CM091758.1 scf7180000184275 99.39 True fake: scaffold gap size wrong estimation (local) 11767472 11767980 90069 90572 CM091758.1 scf7180000184275 98.04 True fake: scaffold gap size wrong estimation (local) 11769040 11769743 90981 91684 CM091758.1 scf7180000184275 100.0 True fake: scaffold gap size wrong estimation (local) 11771603 11799812 92952 121168 CM091758.1 scf7180000184275 99.81 True fake: scaffold gap size wrong estimation (local) 11799962 11802927 121281 124245 CM091758.1 scf7180000184275 99.7 True fake: scaffold gap size wrong estimation (local) 11804003 11805316 125471 126784 CM091758.1 scf7180000184275 99.47 True fake: scaffold gap size wrong estimation (local) 11805801 11815537 127045 136539 CM091758.1 scf7180000184275 97.3 True fake: scaffold gap size wrong estimation (local) 11815794 11826046 136773 146581 CM091758.1 scf7180000184275 95.13 True fake: scaffold gap size wrong estimation (local) 11831801 11928931 150272 247435 CM091758.1 scf7180000184275 99.81 True fake: scaffold gap size wrong estimation (local) 11929124 11990831 247878 309364 CM091758.1 scf7180000184275 99.32 True local misassembly 11991014 12154979 309425 474148 CM091758.1 scf7180000184275 99.17 True fake: scaffold gap size wrong estimation (local) 12155124 12278024 474265 597008 CM091758.1 scf7180000184275 99.63 True fake: scaffold gap size wrong estimation (local) 12278135 12456023 597098 774605 CM091758.1 scf7180000184275 99.68 True indel: indel (> 5bp) 12456307 12551764 774883 870263 CM091758.1 scf7180000184275 99.84 True fake: scaffold gap size wrong estimation (local) 12551985 12573305 870447 891786 CM091758.1 scf7180000184275 99.85 True fake: scaffold gap size wrong estimation (local) 12573552 12587575 891999 906039 CM091758.1 scf7180000184275 99.92 True fake: scaffold gap size wrong estimation (local) 12588101 12634203 906470 952483 CM091758.1 scf7180000184275 99.73 True fake: scaffold gap size wrong estimation (local) 12634652 12785518 952797 1103403 CM091758.1 scf7180000184275 99.77 True fake: scaffold gap size wrong estimation (local) 12787782 12790630 1104402 1107249 CM091758.1 scf7180000184275 99.96 True fake: scaffold gap size wrong estimation (local) 12790920 12794710 1107390 1111180 CM091758.1 scf7180000184275 100.0 True CONTIG scf7180000184275 1111180 correct 5407107 5418473 32 11252 CM091768.1 scf7180000184276 98.7 True fake: scaffold gap size wrong estimation (local) 5419892 5421384 12284 13808 CM091768.1 scf7180000184276 99.2 True fake: scaffold gap size wrong estimation (local) 5422138 5424976 14342 17180 CM091768.1 scf7180000184276 100.0 True fake: scaffold gap size wrong estimation (local) 5425739 5433060 17458 24778 CM091768.1 scf7180000184276 99.96 True translocation, scaffold gap is present 1798570 1799358 28013 27225 CM091764.1 scf7180000184276 99.62 True fake: scaffold gap size wrong estimation (local) 1797636 1798399 29216 28452 CM091764.1 scf7180000184276 98.43 True local misassembly 1800897 1801985 30348 29237 CM091764.1 scf7180000184276 95.5 True translocation, scaffold gap is present 12891885 12893453 30372 31940 CM091758.1 scf7180000184276 98.28 True fake: scaffold gap size wrong estimation (local) 12894449 12938706 32772 76680 CM091758.1 scf7180000184276 99.04 True fake: scaffold gap size wrong estimation (local) 12939405 12950608 77586 88438 CM091758.1 scf7180000184276 96.6 True local misassembly 12951109 13023999 88648 161381 CM091758.1 scf7180000184276 99.58 True fake: scaffold gap size wrong estimation (local) 13026079 13027881 162526 164328 CM091758.1 scf7180000184276 99.83 True indel: indel (<= 5bp) 13027882 13029127 164332 165577 CM091758.1 scf7180000184276 100.0 True indel: indel (<= 5bp) 13029129 13030932 165578 167381 CM091758.1 scf7180000184276 99.83 True indel: indel (<= 5bp) 13030934 13032220 167382 168668 CM091758.1 scf7180000184276 99.92 True indel: indel (> 5bp) 13032227 13033378 168669 169820 CM091758.1 scf7180000184276 99.91 True fake: scaffold gap size wrong estimation (local) 13035299 13035842 171032 171575 CM091758.1 scf7180000184276 99.08 True fake: scaffold gap size wrong estimation (local) 13036496 13040146 172113 175700 CM091758.1 scf7180000184276 98.04 True fake: scaffold gap size wrong estimation (local) 13041328 13097968 176403 233002 CM091758.1 scf7180000184276 99.64 True indel: indel (> 5bp) 13098158 13100469 233148 235458 CM091758.1 scf7180000184276 99.67 True translocation 13883929 13889335 235459 240863 CM091760.1 scf7180000184276 99.28 True fake: scaffold gap size wrong estimation (local) 13890939 13924226 242613 275474 CM091760.1 scf7180000184276 97.8 True fake: scaffold gap size wrong estimation (local) 13924646 13931808 275586 282749 CM091760.1 scf7180000184276 99.22 True fake: scaffold gap size wrong estimation (local) 13932049 13936441 282908 287320 CM091760.1 scf7180000184276 99.18 True local misassembly 13937394 13976527 287357 326568 CM091760.1 scf7180000184276 99.0 True fake: scaffold gap size wrong estimation (local) 13977126 14025609 326787 375230 CM091760.1 scf7180000184276 99.04 True indel: stretch of mismatches 14025645 14036414 375266 386049 CM091760.1 scf7180000184276 99.56 True local misassembly 14036907 14039068 386895 389056 CM091760.1 scf7180000184276 99.17 True fake: scaffold gap size wrong estimation (local) 14039412 14042388 389209 392186 CM091760.1 scf7180000184276 99.33 True fake: scaffold gap size wrong estimation (local) 14042650 14043235 392455 393040 CM091760.1 scf7180000184276 96.08 True indel: indel (<= 5bp) 14043236 14043954 393042 393760 CM091760.1 scf7180000184276 99.44 True indel: indel (<= 5bp) 14044079 14045231 393883 395035 CM091760.1 scf7180000184276 99.13 True indel: indel (<= 5bp) 14045233 14045880 395036 395683 CM091760.1 scf7180000184276 98.77 True local misassembly 14046741 14047753 395684 396696 CM091760.1 scf7180000184276 98.52 True indel: indel (<= 5bp) 14047810 14048409 396755 397354 CM091760.1 scf7180000184276 99.5 True indel: indel (<= 5bp) 14048410 14050148 397356 399094 CM091760.1 scf7180000184276 99.71 True indel: indel (<= 5bp) 14050149 14051122 399096 400069 CM091760.1 scf7180000184276 99.69 True indel: indel (<= 5bp) 14051123 14051764 400071 400712 CM091760.1 scf7180000184276 99.69 True indel: indel (<= 5bp) 14051909 14052968 400854 401913 CM091760.1 scf7180000184276 99.62 True fake: scaffold gap size wrong estimation (local) 14053689 14069717 402392 418328 CM091760.1 scf7180000184276 98.57 True fake: not a misassembly (possible transposable element) 1559238 1559801 418891 418329 CM091764.1 scf7180000184276 99.84 True fake: not a misassembly (possible transposable element) 14069564 14106321 418912 455637 CM091760.1 scf7180000184276 99.25 True indel: indel (> 5bp) 14106560 14109691 455883 459020 CM091760.1 scf7180000184276 98.89 True fake: scaffold gap size wrong estimation (local) 14110639 14134666 459523 483269 CM091760.1 scf7180000184276 97.13 True fake: scaffold gap size wrong estimation (local) 14135049 14135642 483559 484152 CM091760.1 scf7180000184276 99.33 True indel: indel (<= 5bp) 14135643 14136369 484154 484880 CM091760.1 scf7180000184276 99.17 True local misassembly 14137384 14137942 484881 485439 CM091760.1 scf7180000184276 99.64 True indel: indel (<= 5bp) 14138306 14139122 485805 486621 CM091760.1 scf7180000184276 99.76 True local misassembly 14140097 14141235 487605 488743 CM091760.1 scf7180000184276 99.65 True fake: scaffold gap size wrong estimation (local) 14142181 14151547 489143 498412 CM091760.1 scf7180000184276 97.67 True fake: scaffold gap size wrong estimation (local) 14151912 14156760 498523 503483 CM091760.1 scf7180000184276 97.03 True fake: scaffold gap size wrong estimation (local) 14157526 14163676 504065 510235 CM091760.1 scf7180000184276 98.57 True fake: scaffold gap size wrong estimation (local) 14163853 14176638 510347 523007 CM091760.1 scf7180000184276 97.08 True fake: scaffold gap size wrong estimation (local) 14176769 14289725 523095 635797 CM091760.1 scf7180000184276 99.18 True fake: not a misassembly (possible transposable element) 4125434 4126629 635798 636994 CM091758.1 scf7180000184276 99.59 True fake: not a misassembly (possible transposable element) 14289636 14294400 637015 641752 CM091760.1 scf7180000184276 99.12 True fake: scaffold gap size wrong estimation (local) 14294487 14345138 641833 692630 CM091760.1 scf7180000184276 99.03 True fake: scaffold gap size wrong estimation (local) 14346552 14365165 694461 713039 CM091760.1 scf7180000184276 97.83 True indel: indel (> 5bp) 14365277 14642489 713109 989890 CM091760.1 scf7180000184276 99.32 True fake: scaffold gap size wrong estimation (local) 14643524 14710877 990415 1058215 CM091760.1 scf7180000184276 98.91 True local misassembly 14711314 14876632 1058963 1224155 CM091760.1 scf7180000184276 99.61 True fake: scaffold gap size wrong estimation (local) 14877969 14995586 1224823 1342031 CM091760.1 scf7180000184276 98.58 True fake: scaffold gap size wrong estimation (local) 14996180 15016555 1342188 1362494 CM091760.1 scf7180000184276 98.99 True fake: scaffold gap size wrong estimation (local) 15016718 15084626 1362598 1430392 CM091760.1 scf7180000184276 99.17 True local misassembly 15084727 15106655 1432612 1454561 CM091760.1 scf7180000184276 99.85 True relocation, inconsistency = 8597 15115253 15121309 1454562 1460989 CM091760.1 scf7180000184276 96.78 True CONTIG scf7180000184276 1461314 misassembled CONTIG scf7180000184277 3520 unaligned 86307 87147 827 3 CM091752.1 scf7180000184278 95.38 True fake: scaffold gap size wrong estimation (local) 79494 83214 6341 2618 CM091752.1 scf7180000184278 99.49 True fake: scaffold gap size wrong estimation (local) 77939 79041 7732 6630 CM091752.1 scf7180000184278 98.48 True fake: scaffold gap size wrong estimation (local) 75273 76336 10952 9889 CM091752.1 scf7180000184278 99.81 True fake: scaffold gap size wrong estimation (local) 73746 74627 12786 11905 CM091752.1 scf7180000184278 100.0 True fake: scaffold gap size wrong estimation (local) 71356 72237 15146 14265 CM091752.1 scf7180000184278 100.0 True fake: scaffold gap size wrong estimation (local) 65792 70079 20238 15919 CM091752.1 scf7180000184278 98.95 True fake: scaffold gap size wrong estimation (local) 63588 64933 22117 20787 CM091752.1 scf7180000184278 96.37 True translocation, scaffold gap is present 2953723 2955654 26633 24706 CM091768.1 scf7180000184278 99.59 True fake: scaffold gap size wrong estimation (local) 2949812 2952808 30115 27119 CM091768.1 scf7180000184278 98.5 True fake: scaffold gap size wrong estimation (local) 2947137 2948502 32116 30748 CM091768.1 scf7180000184278 99.63 True fake: scaffold gap size wrong estimation (local) 2945533 2946193 34019 33358 CM091768.1 scf7180000184278 99.4 True translocation, scaffold gap is present 9049480 9050008 34597 34070 CM091767.1 scf7180000184278 99.62 True fake: scaffold gap size wrong estimation (local) 9047835 9049396 36255 34693 CM091767.1 scf7180000184278 99.81 True fake: scaffold gap size wrong estimation (local) 9040700 9042621 40088 38166 CM091767.1 scf7180000184278 99.95 True translocation, scaffold gap is present 356662 357332 42493 41823 CM091764.1 scf7180000184278 99.11 True fake: scaffold gap size wrong estimation (local) 332061 355055 67354 44413 CM091764.1 scf7180000184278 99.54 True translocation, scaffold gap is present 9073473 9074318 68665 67820 CM091767.1 scf7180000184278 99.53 True fake: scaffold gap size wrong estimation (local) 9066979 9072084 75999 71010 CM091767.1 scf7180000184278 96.35 True fake: scaffold gap size wrong estimation (local) 9063632 9066847 79818 76600 CM091767.1 scf7180000184278 99.81 True fake: scaffold gap size wrong estimation (local) 9061402 9063168 81869 80103 CM091767.1 scf7180000184278 100.0 True fake: scaffold gap size wrong estimation (local) 9058009 9059200 85038 83847 CM091767.1 scf7180000184278 99.83 True fake: scaffold gap size wrong estimation (local) 9057500 9058008 85572 85064 CM091767.1 scf7180000184278 95.28 True local misassembly 9055907 9056669 86771 86009 CM091767.1 scf7180000184278 99.74 True translocation, scaffold gap is present 16694662 16695284 87492 86871 CM091752.1 scf7180000184278 97.43 True translocation, scaffold gap is present 15692099 15694463 90262 92653 CM091757.1 scf7180000184278 98.82 True fake: scaffold gap size wrong estimation (local) 15695462 15700523 93485 98569 CM091757.1 scf7180000184278 99.68 True translocation, scaffold gap is present 737410 741560 99197 103337 CM091752.1 scf7180000184278 98.7 True translocation, scaffold gap is present 8002307 8002865 104499 105057 CM091767.1 scf7180000184278 99.11 True translocation, scaffold gap is present 4577351 4580291 105108 108048 CM091754.1 scf7180000184278 100.0 True indel: indel (<= 5bp) 4580377 4594224 108135 121819 CM091754.1 scf7180000184278 98.45 True fake: scaffold gap size wrong estimation (local) 4595698 4596575 122439 123316 CM091754.1 scf7180000184278 99.89 True fake: scaffold gap size wrong estimation (local) 4596576 4598978 123696 126098 CM091754.1 scf7180000184278 99.88 True fake: scaffold gap size wrong estimation (local) 4598979 4601046 126298 128365 CM091754.1 scf7180000184278 100.0 True fake: scaffold gap size wrong estimation (local) 4601047 4603052 128702 130707 CM091754.1 scf7180000184278 99.7 True indel: indel (<= 5bp) 4603053 4603943 130713 131603 CM091754.1 scf7180000184278 97.76 True fake: scaffold gap size wrong estimation (local) 4605956 4606606 132834 133484 CM091754.1 scf7180000184278 99.85 True fake: scaffold gap size wrong estimation (local) 4606819 4610119 133687 136985 CM091754.1 scf7180000184278 99.88 True translocation, scaffold gap is present 2969948 2972627 138341 141024 CM091752.1 scf7180000184278 99.96 True translocation, scaffold gap is present 9846696 9857647 153346 142394 CM091765.1 scf7180000184278 99.96 True relocation, scaffold gap is present, inconsistency = 1453089 11312575 11313486 155185 156096 CM091765.1 scf7180000184278 99.67 True fake: scaffold gap size wrong estimation (local) 11314162 11315022 156289 157149 CM091765.1 scf7180000184278 97.56 True fake: scaffold gap size wrong estimation (local) 11315844 11319450 157930 161481 CM091765.1 scf7180000184278 98.38 True fake: scaffold gap size wrong estimation (local) 11319779 11335193 162663 177923 CM091765.1 scf7180000184278 97.8 True fake: scaffold gap size wrong estimation (local) 11335762 11336410 178556 179204 CM091765.1 scf7180000184278 99.54 True fake: scaffold gap size wrong estimation (local) 11337610 11338802 180340 181532 CM091765.1 scf7180000184278 100.0 True indel: indel (<= 5bp) 11338803 11339977 181534 182708 CM091765.1 scf7180000184278 99.74 True fake: scaffold gap size wrong estimation (local) 11340614 11344084 183822 187292 CM091765.1 scf7180000184278 99.74 True relocation, scaffold gap is present, inconsistency = -106696 11237489 11239424 187393 189328 CM091765.1 scf7180000184278 100.0 True fake: scaffold gap size wrong estimation (local) 11239425 11239932 189809 190316 CM091765.1 scf7180000184278 96.46 True fake: not a misassembly (possible transposable element) 11345957 11347481 190586 192075 CM091765.1 scf7180000184278 97.65 True fake: not a misassembly (possible transposable element) 11240497 11242493 192096 194091 CM091765.1 scf7180000184278 99.85 True fake: scaffold gap size wrong estimation (local) 11242631 11245198 194151 196685 CM091765.1 scf7180000184278 96.99 True fake: scaffold gap size wrong estimation (local) 11245491 11246737 197104 198344 CM091765.1 scf7180000184278 99.51 True translocation, scaffold gap is present 4661736 4671193 207849 198395 CM091768.1 scf7180000184278 99.96 True fake: scaffold gap size wrong estimation (local) 4654122 4657393 215102 211832 CM091768.1 scf7180000184278 99.97 True fake: scaffold gap size wrong estimation (local) 4649583 4652297 219004 216281 CM091768.1 scf7180000184278 99.93 True fake: scaffold gap size wrong estimation (local) 4633123 4648799 235132 219557 CM091768.1 scf7180000184278 98.8 True translocation, scaffold gap is present 15555882 15556831 236119 235170 CM091757.1 scf7180000184278 99.89 True fake: scaffold gap size wrong estimation (local) 15553241 15555286 239004 236959 CM091757.1 scf7180000184278 99.86 True translocation 5226593 5230447 239005 242859 CM091768.1 scf7180000184278 99.9 True relocation, scaffold gap is present, inconsistency = 938541 4287020 4287595 243931 243316 CM091768.1 scf7180000184278 95.81 True relocation, scaffold gap is present, inconsistency = -1853513 6136239 6137830 248225 246634 CM091768.1 scf7180000184278 100.0 True fake: scaffold gap size wrong estimation (local) 6121832 6136121 262902 248617 CM091768.1 scf7180000184278 99.97 True relocation, scaffold gap is present, inconsistency = 1855445 4263932 4264580 265357 264709 CM091768.1 scf7180000184278 100.0 True relocation, scaffold gap is present, inconsistency = -16209 4278007 4279708 267485 265790 CM091768.1 scf7180000184278 98.68 True relocation, scaffold gap is present, inconsistency = -1841791 6093296 6119306 293983 267977 CM091768.1 scf7180000184278 99.94 True fake: scaffold gap size wrong estimation (local) 6070069 6093065 317461 294560 CM091768.1 scf7180000184278 99.57 True fake: not a misassembly (possible transposable element) 4249588 4250130 318054 317512 CM091768.1 scf7180000184278 98.71 True fake: not a misassembly (possible transposable element) 6047839 6070000 339894 318105 CM091768.1 scf7180000184278 98.31 True fake: scaffold gap size wrong estimation (local) 6045838 6047259 341780 340358 CM091768.1 scf7180000184278 99.93 True fake: scaffold gap size wrong estimation (local) 6035296 6045027 352080 342489 CM091768.1 scf7180000184278 98.28 True fake: scaffold gap size wrong estimation (local) 6000116 6033612 386573 352921 CM091768.1 scf7180000184278 98.03 True fake: scaffold gap size wrong estimation (local) 5983130 6000202 403954 387093 CM091768.1 scf7180000184278 98.76 True fake: scaffold gap size wrong estimation (local) 5928992 5982954 458234 404098 CM091768.1 scf7180000184278 99.07 True fake: scaffold gap size wrong estimation (local) 5924471 5928589 462461 458343 CM091768.1 scf7180000184278 99.95 True fake: scaffold gap size wrong estimation (local) 5910413 5924024 476326 462741 CM091768.1 scf7180000184278 99.8 True fake: scaffold gap size wrong estimation (local) 5898154 5909489 488578 476807 CM091768.1 scf7180000184278 96.48 True fake: scaffold gap size wrong estimation (local) 5847183 5898035 540337 489070 CM091768.1 scf7180000184278 99.11 True fake: not a misassembly (possible transposable element) 11672074 11677129 540372 545417 CM091758.1 scf7180000184278 99.45 True fake: not a misassembly (possible transposable element) 5846451 5847063 546030 545418 CM091768.1 scf7180000184278 100.0 True fake: not a misassembly (possible transposable element) 1048622 1050482 547911 546051 CM091761.1 scf7180000184278 98.36 True fake: not a misassembly (possible transposable element) 5838284 5846552 556169 547912 CM091768.1 scf7180000184278 99.7 True translocation 8631867 8633647 557967 556170 CM091767.1 scf7180000184278 98.63 True local misassembly 8633975 8637321 562061 558714 CM091767.1 scf7180000184278 99.91 True translocation, scaffold gap is present 15552321 15553284 563083 562113 CM091757.1 scf7180000184278 99.28 True fake: scaffold gap size wrong estimation (local) 15547906 15549315 564894 563486 CM091757.1 scf7180000184278 99.86 True fake: not a misassembly (possible transposable element) 6383335 6384797 566377 564915 CM091768.1 scf7180000184278 99.18 True fake: not a misassembly (possible transposable element) 15546453 15547076 567371 566748 CM091757.1 scf7180000184278 98.72 True translocation, scaffold gap is present 5837177 5838492 569371 568056 CM091768.1 scf7180000184278 98.48 True indel: indel (> 5bp) 5836648 5837156 569880 569372 CM091768.1 scf7180000184278 100.0 True fake: scaffold gap size wrong estimation (local) 5833248 5836473 574121 570896 CM091768.1 scf7180000184278 99.26 True indel: indel (> 5bp) 5832485 5833085 574837 574246 CM091768.1 scf7180000184278 96.01 True fake: scaffold gap size wrong estimation (local) 5831851 5833457 577759 576185 CM091768.1 scf7180000184278 96.64 True local misassembly 5821264 5831384 588576 578454 CM091768.1 scf7180000184278 99.03 True fake: not a misassembly (possible transposable element) 8621766 8622913 589775 588627 CM091767.1 scf7180000184278 99.74 True fake: not a misassembly (possible transposable element) 5797021 5820628 613740 590093 CM091768.1 scf7180000184278 99.74 True fake: scaffold gap size wrong estimation (local) 5795563 5796308 614540 613815 CM091768.1 scf7180000184278 95.65 True fake: scaffold gap size wrong estimation (local) 5793287 5794000 615748 615035 CM091768.1 scf7180000184278 99.44 True indel: indel (> 5bp) 5792454 5793221 616568 615801 CM091768.1 scf7180000184278 96.88 True local misassembly 5780286 5791260 627963 616989 CM091768.1 scf7180000184278 99.98 True fake: scaffold gap size wrong estimation (local) 5778898 5780119 629340 628119 CM091768.1 scf7180000184278 100.0 True fake: scaffold gap size wrong estimation (local) 5765405 5778287 642474 629732 CM091768.1 scf7180000184278 98.66 True fake: scaffold gap size wrong estimation (local) 5763209 5764004 644418 643626 CM091768.1 scf7180000184278 98.62 True fake: scaffold gap size wrong estimation (local) 5746927 5762403 659934 644511 CM091768.1 scf7180000184278 99.55 True translocation, scaffold gap is present 8544826 8547634 663008 660199 CM091767.1 scf7180000184278 99.79 True fake: scaffold gap size wrong estimation (local) 8541431 8543967 665753 663219 CM091767.1 scf7180000184278 99.84 True fake: scaffold gap size wrong estimation (local) 8540539 8541316 666666 665874 CM091767.1 scf7180000184278 100.0 True translocation, scaffold gap is present 5730924 5731943 670084 669065 CM091768.1 scf7180000184278 96.67 True fake: scaffold gap size wrong estimation (local) 5703574 5729805 697379 671145 CM091768.1 scf7180000184278 96.75 True fake: scaffold gap size wrong estimation (local) 5666682 5703447 733909 697427 CM091768.1 scf7180000184278 98.76 True fake: scaffold gap size wrong estimation (local) 5661682 5665836 738347 734192 CM091768.1 scf7180000184278 99.11 True fake: not a misassembly (possible transposable element) 9001977 9002685 738450 739158 CM091767.1 scf7180000184278 100.0 True fake: not a misassembly (possible transposable element) 5648148 5661496 752361 739214 CM091768.1 scf7180000184278 98.13 True fake: scaffold gap size wrong estimation (local) 5645305 5645878 754026 753453 CM091768.1 scf7180000184278 97.39 True fake: scaffold gap size wrong estimation (local) 5641178 5644517 759029 755690 CM091768.1 scf7180000184278 99.97 True fake: scaffold gap size wrong estimation (local) 5639968 5641353 760817 759432 CM091768.1 scf7180000184278 99.64 True translocation, scaffold gap is present 9010961 9012160 760857 762056 CM091767.1 scf7180000184278 100.0 True fake: not a misassembly (possible transposable element) 7840675 7842019 762077 763421 CM091759.1 scf7180000184278 99.64 True fake: not a misassembly (possible transposable element) 9012543 9025925 763422 776885 CM091767.1 scf7180000184278 97.05 True fake: not a misassembly (possible transposable element) 5630121 5632379 779164 776906 CM091768.1 scf7180000184278 100.0 True fake: not a misassembly (possible transposable element) 9027187 9027689 779968 780470 CM091767.1 scf7180000184278 99.8 True translocation, scaffold gap is present 5644787 5648681 784954 781067 CM091768.1 scf7180000184278 99.74 True relocation, scaffold gap is present, inconsistency = 17804 5623858 5626595 788079 785342 CM091768.1 scf7180000184278 99.16 True fake: scaffold gap size wrong estimation (local) 5609026 5622387 802471 789091 CM091768.1 scf7180000184278 99.97 True translocation, scaffold gap is present 15591936 15592878 802522 803464 CM091757.1 scf7180000184278 100.0 True fake: scaffold gap size wrong estimation (local) 15594667 15595660 804897 805903 CM091757.1 scf7180000184278 100.0 True fake: scaffold gap size wrong estimation (local) 15596581 15597185 806052 806656 CM091757.1 scf7180000184278 100.0 True fake: scaffold gap size wrong estimation (local) 15597928 15598608 807077 807757 CM091757.1 scf7180000184278 100.0 True fake: scaffold gap size wrong estimation (local) 15599650 15600648 808454 809439 CM091757.1 scf7180000184278 97.0 True indel: indel (<= 5bp) 15600774 15601616 809566 810399 CM091757.1 scf7180000184278 97.86 True fake: scaffold gap size wrong estimation (local) 15602231 15608049 810891 816804 CM091757.1 scf7180000184278 98.63 True fake: scaffold gap size wrong estimation (local) 15609134 15609852 817965 818685 CM091757.1 scf7180000184278 98.34 True fake: scaffold gap size wrong estimation (local) 15610586 15617754 818863 826016 CM091757.1 scf7180000184278 99.5 True fake: scaffold gap size wrong estimation (local) 15618670 15622247 826463 830054 CM091757.1 scf7180000184278 99.75 True fake: not a misassembly (possible transposable element) 1895712 1897236 831635 830109 CM091751.1 scf7180000184278 98.63 True fake: not a misassembly (possible transposable element) 15622175 15625931 831656 835413 CM091757.1 scf7180000184278 99.76 True fake: scaffold gap size wrong estimation (local) 15626896 15628282 836247 837633 CM091757.1 scf7180000184278 100.0 True fake: scaffold gap size wrong estimation (local) 15628870 15630319 838541 839990 CM091757.1 scf7180000184278 100.0 True translocation, scaffold gap is present 13428026 13429311 842092 840807 CM091758.1 scf7180000184278 99.92 True translocation, scaffold gap is present 9291884 9292858 843087 842113 CM091767.1 scf7180000184278 100.0 True translocation, scaffold gap is present 15630866 15631827 843108 844069 CM091757.1 scf7180000184278 100.0 True indel: indel (<= 5bp) 15631828 15632387 844071 844630 CM091757.1 scf7180000184278 98.75 True local misassembly 15632679 15634915 844631 846867 CM091757.1 scf7180000184278 98.93 True translocation, scaffold gap is present 1690417 1691063 847534 846888 CM091764.1 scf7180000184278 99.69 True indel: indel (<= 5bp) 1689213 1690416 848739 847536 CM091764.1 scf7180000184278 96.43 True indel: indel (> 5bp) 1687426 1689168 850482 848740 CM091764.1 scf7180000184278 98.91 True indel: indel (<= 5bp) 1684654 1687425 853255 850484 CM091764.1 scf7180000184278 100.0 True fake: scaffold gap size wrong estimation (local) 1677744 1680722 859833 856857 CM091764.1 scf7180000184278 98.76 True indel: indel (<= 5bp) 1675749 1677568 861831 860012 CM091764.1 scf7180000184278 99.84 True fake: scaffold gap size wrong estimation (local) 1674373 1675627 863474 862220 CM091764.1 scf7180000184278 99.92 True fake: scaffold gap size wrong estimation (local) 1673864 1674372 864151 863643 CM091764.1 scf7180000184278 100.0 True translocation, scaffold gap is present 7687041 7687567 864737 864210 CM091767.1 scf7180000184278 99.81 True fake: scaffold gap size wrong estimation (local) 7682148 7683453 868717 867412 CM091767.1 scf7180000184278 99.69 True fake: scaffold gap size wrong estimation (local) 7680202 7681696 870370 868876 CM091767.1 scf7180000184278 98.19 True local misassembly 7678504 7680054 871921 870371 CM091767.1 scf7180000184278 99.87 True indel: indel (<= 5bp) 7676523 7678503 873903 871923 CM091767.1 scf7180000184278 99.95 True indel: indel (<= 5bp) 7674956 7676083 875472 874345 CM091767.1 scf7180000184278 98.58 True indel: indel (> 5bp) 7673987 7674955 876447 875479 CM091767.1 scf7180000184278 100.0 True fake: scaffold gap size wrong estimation (local) 7671582 7673820 879449 877211 CM091767.1 scf7180000184278 99.46 True fake: scaffold gap size wrong estimation (local) 7670341 7671581 880990 879750 CM091767.1 scf7180000184278 99.68 True fake: scaffold gap size wrong estimation (local) 7667649 7670340 883719 881028 CM091767.1 scf7180000184278 99.89 True indel: indel (> 5bp) 7666896 7667620 884499 883775 CM091767.1 scf7180000184278 98.21 True fake: scaffold gap size wrong estimation (local) 7664108 7666045 886915 884977 CM091767.1 scf7180000184278 99.9 True fake: scaffold gap size wrong estimation (local) 7662112 7662820 888581 887873 CM091767.1 scf7180000184278 100.0 True fake: scaffold gap size wrong estimation (local) 7659182 7661511 891606 889277 CM091767.1 scf7180000184278 99.96 True fake: scaffold gap size wrong estimation (local) 7638007 7658388 912344 892161 CM091767.1 scf7180000184278 98.96 True fake: scaffold gap size wrong estimation (local) 7633986 7637557 916581 912985 CM091767.1 scf7180000184278 99.75 True fake: scaffold gap size wrong estimation (local) 7630796 7633511 919643 916829 CM091767.1 scf7180000184278 96.86 True fake: scaffold gap size wrong estimation (local) 7628314 7629834 921747 920227 CM091767.1 scf7180000184278 99.87 True fake: scaffold gap size wrong estimation (local) 7626181 7628313 923933 921801 CM091767.1 scf7180000184278 99.91 True indel: indel (<= 5bp) 7624893 7626180 925222 923935 CM091767.1 scf7180000184278 100.0 True indel: indel (<= 5bp) 7622596 7624891 927518 925223 CM091767.1 scf7180000184278 99.0 True fake: scaffold gap size wrong estimation (local) 7621223 7621964 928668 927927 CM091767.1 scf7180000184278 100.0 True fake: scaffold gap size wrong estimation (local) 7619281 7620395 930608 929494 CM091767.1 scf7180000184278 100.0 True fake: scaffold gap size wrong estimation (local) 7596635 7618880 952948 931208 CM091767.1 scf7180000184278 97.56 True fake: not a misassembly (possible transposable element) 2058937 2062432 959222 955727 CM091764.1 scf7180000184278 100.0 True fake: not a misassembly (possible transposable element) 7595502 7596310 960081 959273 CM091767.1 scf7180000184278 99.88 True translocation 5225731 5226565 960916 960082 CM091768.1 scf7180000184278 100.0 True local misassembly 5223209 5224889 963438 961758 CM091768.1 scf7180000184278 100.0 True fake: scaffold gap size wrong estimation (local) 5216440 5221914 973470 967983 CM091768.1 scf7180000184278 99.69 True translocation, scaffold gap is present 8281581 8282773 974702 973491 CM091767.1 scf7180000184278 95.39 True relocation, scaffold gap is present, inconsistency = -1000746 9277080 9278543 979964 978486 CM091767.1 scf7180000184278 99.86 True translocation, scaffold gap is present 18888032 18888741 979985 980671 CM091751.1 scf7180000184278 96.36 True translocation, scaffold gap is present 8275065 8279044 985332 981293 CM091767.1 scf7180000184278 98.11 True fake: not a misassembly (possible transposable element) 18780104 18785407 985397 990703 CM091751.1 scf7180000184278 98.07 True fake: not a misassembly (possible transposable element) 8272000 8274437 993176 990774 CM091767.1 scf7180000184278 97.23 True translocation, scaffold gap is present 18785620 18792885 993197 1000515 CM091751.1 scf7180000184278 98.24 True fake: scaffold gap size wrong estimation (local) 18793064 18795297 1000644 1002863 CM091751.1 scf7180000184278 98.39 True fake: scaffold gap size wrong estimation (local) 18795446 18805583 1002983 1012819 CM091751.1 scf7180000184278 96.03 True fake: not a misassembly (possible transposable element) 11420141 11421491 1014389 1013039 CM091765.1 scf7180000184278 99.48 True fake: not a misassembly (possible transposable element) 18805718 18808115 1014863 1017260 CM091751.1 scf7180000184278 99.79 True translocation, scaffold gap is present 8269919 8271922 1019389 1017394 CM091767.1 scf7180000184278 99.55 True fake: scaffold gap size wrong estimation (local) 8260991 8268251 1028484 1021222 CM091767.1 scf7180000184278 99.9 True translocation, scaffold gap is present 18810015 18811318 1028541 1029853 CM091751.1 scf7180000184278 98.82 True fake: scaffold gap size wrong estimation (local) 18811900 18812981 1030061 1031143 CM091751.1 scf7180000184278 99.45 True fake: scaffold gap size wrong estimation (local) 18813122 18819362 1031443 1037670 CM091751.1 scf7180000184278 98.28 True fake: scaffold gap size wrong estimation (local) 18819571 18826369 1037829 1044481 CM091751.1 scf7180000184278 96.7 True fake: scaffold gap size wrong estimation (local) 18826684 18828087 1044716 1046118 CM091751.1 scf7180000184278 99.64 True fake: scaffold gap size wrong estimation (local) 18828481 18830720 1046644 1048883 CM091751.1 scf7180000184278 99.42 True fake: scaffold gap size wrong estimation (local) 18833429 18834491 1050945 1052007 CM091751.1 scf7180000184278 98.97 True fake: scaffold gap size wrong estimation (local) 18835699 18836202 1052532 1053035 CM091751.1 scf7180000184278 99.6 True fake: scaffold gap size wrong estimation (local) 18836330 18837079 1053151 1053900 CM091751.1 scf7180000184278 99.87 True local misassembly 18837711 18843772 1054156 1060222 CM091751.1 scf7180000184278 99.04 True fake: scaffold gap size wrong estimation (local) 18845300 18848111 1061173 1063979 CM091751.1 scf7180000184278 98.08 True fake: scaffold gap size wrong estimation (local) 18848377 18849568 1064187 1065390 CM091751.1 scf7180000184278 98.34 True fake: scaffold gap size wrong estimation (local) 18851655 18852637 1067208 1068190 CM091751.1 scf7180000184278 98.17 True fake: scaffold gap size wrong estimation (local) 18854121 18854705 1069680 1070264 CM091751.1 scf7180000184278 98.97 True fake: scaffold gap size wrong estimation (local) 18855656 18856620 1071167 1072131 CM091751.1 scf7180000184278 99.38 True fake: scaffold gap size wrong estimation (local) 18858431 18859049 1073812 1074430 CM091751.1 scf7180000184278 99.03 True fake: scaffold gap size wrong estimation (local) 18860146 18860698 1075661 1076213 CM091751.1 scf7180000184278 98.92 True fake: scaffold gap size wrong estimation (local) 18864726 18865894 1078881 1080052 CM091751.1 scf7180000184278 99.06 True local misassembly 18864236 18864825 1082533 1083115 CM091751.1 scf7180000184278 97.37 True fake: scaffold gap size wrong estimation (local) 18874203 18875989 1085781 1087558 CM091751.1 scf7180000184278 98.88 True fake: scaffold gap size wrong estimation (local) 18876474 18878066 1088343 1089951 CM091751.1 scf7180000184278 98.26 True fake: scaffold gap size wrong estimation (local) 18879093 18888106 1090689 1099701 CM091751.1 scf7180000184278 99.37 True fake: scaffold gap size wrong estimation (local) 18889210 18891248 1101047 1103084 CM091751.1 scf7180000184278 99.66 True fake: scaffold gap size wrong estimation (local) 18891412 18893052 1103195 1104829 CM091751.1 scf7180000184278 98.84 True fake: scaffold gap size wrong estimation (local) 18893242 18898357 1104862 1110049 CM091751.1 scf7180000184278 97.16 True fake: scaffold gap size wrong estimation (local) 18898682 18912459 1110685 1124456 CM091751.1 scf7180000184278 98.76 True inversion, scaffold gap is present 18912554 18913060 1125866 1125362 CM091751.1 scf7180000184278 99.61 True translocation, scaffold gap is present 5268439 5275576 1133258 1126121 CM091768.1 scf7180000184278 100.0 True fake: scaffold gap size wrong estimation (local) 5266026 5267703 1135608 1133946 CM091768.1 scf7180000184278 99.03 True fake: scaffold gap size wrong estimation (local) 5262872 5263372 1136723 1136223 CM091768.1 scf7180000184278 100.0 True fake: scaffold gap size wrong estimation (local) 5257514 5262533 1142573 1137505 CM091768.1 scf7180000184278 99.5 True relocation, scaffold gap is present, inconsistency = 138637 5117250 5118826 1142624 1144195 CM091768.1 scf7180000184278 98.77 True fake: scaffold gap size wrong estimation (local) 5119525 5129518 1144887 1154458 CM091768.1 scf7180000184278 95.54 True fake: scaffold gap size wrong estimation (local) 5131638 5140489 1155711 1164562 CM091768.1 scf7180000184278 100.0 True fake: scaffold gap size wrong estimation (local) 5142447 5143476 1165827 1166856 CM091768.1 scf7180000184278 100.0 True fake: scaffold gap size wrong estimation (local) 5144401 5154681 1167565 1178211 CM091768.1 scf7180000184278 96.57 True fake: not a misassembly (possible transposable element) 2518064 2519120 1179268 1178212 CM091759.1 scf7180000184278 99.83 True fake: not a misassembly (possible transposable element) 5154627 5156978 1179297 1181647 CM091768.1 scf7180000184278 99.96 True fake: scaffold gap size wrong estimation (local) 5157723 5158936 1181940 1183153 CM091768.1 scf7180000184278 100.0 True fake: scaffold gap size wrong estimation (local) 5159320 5161796 1183456 1185932 CM091768.1 scf7180000184278 99.84 True fake: scaffold gap size wrong estimation (local) 5162191 5162895 1186392 1187096 CM091768.1 scf7180000184278 99.72 True fake: scaffold gap size wrong estimation (local) 5163969 5164676 1187736 1188443 CM091768.1 scf7180000184278 100.0 True fake: scaffold gap size wrong estimation (local) 5165528 5177701 1189085 1201258 CM091768.1 scf7180000184278 99.99 True fake: scaffold gap size wrong estimation (local) 5178601 5179209 1202318 1202926 CM091768.1 scf7180000184278 100.0 True translocation, scaffold gap is present 9384179 9385580 1205527 1204126 CM091767.1 scf7180000184278 99.79 True translocation, scaffold gap is present 16112514 16113059 1205548 1206093 CM091752.1 scf7180000184278 98.9 True translocation, scaffold gap is present 8362452 8364271 1206643 1208458 CM091767.1 scf7180000184278 98.08 True translocation, scaffold gap is present 5104363 5113390 1211114 1220144 CM091768.1 scf7180000184278 99.72 True translocation, scaffold gap is present 9379013 9380044 1221216 1220185 CM091767.1 scf7180000184278 99.81 True fake: scaffold gap size wrong estimation (local) 9377293 9378403 1222884 1221774 CM091767.1 scf7180000184278 100.0 True fake: scaffold gap size wrong estimation (local) 9374337 9376508 1226136 1223946 CM091767.1 scf7180000184278 99.49 True relocation, scaffold gap is present, inconsistency = 1007775 8365393 8366159 1226539 1227305 CM091767.1 scf7180000184278 100.0 True fake: scaffold gap size wrong estimation (local) 8366465 8367555 1227965 1229055 CM091767.1 scf7180000184278 99.82 True fake: scaffold gap size wrong estimation (local) 8367556 8369286 1229280 1231010 CM091767.1 scf7180000184278 100.0 True fake: scaffold gap size wrong estimation (local) 8369700 8371394 1231543 1233235 CM091767.1 scf7180000184278 99.82 True indel: indel (> 5bp) 8371482 8372921 1233345 1234849 CM091767.1 scf7180000184278 95.82 True fake: scaffold gap size wrong estimation (local) 8373661 8376741 1235126 1238206 CM091767.1 scf7180000184278 99.71 True fake: scaffold gap size wrong estimation (local) 8377784 8378866 1239747 1240845 CM091767.1 scf7180000184278 99.63 True fake: scaffold gap size wrong estimation (local) 8381672 8382194 1242566 1243088 CM091767.1 scf7180000184278 100.0 True relocation, scaffold gap is present, inconsistency = 422337 8805083 8806100 1244658 1243640 CM091767.1 scf7180000184278 99.9 True fake: not a misassembly (possible transposable element) 131524 134449 1247635 1244709 CM091763.1 scf7180000184278 99.93 True fake: not a misassembly (possible transposable element) 8803158 8804323 1248850 1247656 CM091767.1 scf7180000184278 99.15 True translocation, scaffold gap is present 123298 131283 1257776 1249769 CM091763.1 scf7180000184278 99.91 True fake: scaffold gap size wrong estimation (local) 117036 119277 1261120 1258880 CM091763.1 scf7180000184278 99.73 True fake: scaffold gap size wrong estimation (local) 115536 116846 1262744 1261434 CM091763.1 scf7180000184278 98.17 True fake: scaffold gap size wrong estimation (local) 111534 114235 1266462 1263764 CM091763.1 scf7180000184278 99.63 True indel: indel (> 5bp) 105391 111384 1272618 1266618 CM091763.1 scf7180000184278 98.89 True fake: scaffold gap size wrong estimation (local) 103234 105183 1274757 1272808 CM091763.1 scf7180000184278 99.38 True fake: scaffold gap size wrong estimation (local) 102346 102861 1275585 1275070 CM091763.1 scf7180000184278 99.42 True translocation, scaffold gap is present 4508671 4509344 1276332 1277006 CM091768.1 scf7180000184278 99.85 True fake: scaffold gap size wrong estimation (local) 4512198 4512826 1278960 1279588 CM091768.1 scf7180000184278 100.0 True fake: scaffold gap size wrong estimation (local) 4514394 4515148 1280828 1281582 CM091768.1 scf7180000184278 98.54 True fake: scaffold gap size wrong estimation (local) 4515300 4516268 1281691 1282667 CM091768.1 scf7180000184278 99.68 True fake: scaffold gap size wrong estimation (local) 4516558 4517538 1282955 1283935 CM091768.1 scf7180000184278 100.0 True fake: scaffold gap size wrong estimation (local) 4518056 4520267 1284463 1286674 CM091768.1 scf7180000184278 100.0 True fake: scaffold gap size wrong estimation (local) 4523992 4524796 1288400 1289203 CM091768.1 scf7180000184278 99.88 True relocation, scaffold gap is present, inconsistency = 1649569 6174416 6175087 1289254 1289904 CM091768.1 scf7180000184278 96.14 True translocation, scaffold gap is present 19471500 19472693 1293414 1292215 CM091751.1 scf7180000184278 98.92 True fake: scaffold gap size wrong estimation (local) 19469978 19471071 1294804 1293706 CM091751.1 scf7180000184278 98.28 True fake: scaffold gap size wrong estimation (local) 19464267 19469898 1300640 1294988 CM091751.1 scf7180000184278 98.52 True fake: scaffold gap size wrong estimation (local) 19458106 19463400 1306298 1300986 CM091751.1 scf7180000184278 98.65 True fake: scaffold gap size wrong estimation (local) 19454050 19456768 1309861 1307143 CM091751.1 scf7180000184278 99.34 True indel: indel (<= 5bp) 19453404 19453904 1310511 1310011 CM091751.1 scf7180000184278 99.8 True local misassembly 19451924 19452553 1311990 1311361 CM091751.1 scf7180000184278 99.21 True fake: scaffold gap size wrong estimation (local) 19450112 19451224 1313565 1312453 CM091751.1 scf7180000184278 98.92 True local misassembly 19447976 19449271 1315662 1314367 CM091751.1 scf7180000184278 99.46 True local misassembly 19446254 19447315 1317325 1316264 CM091751.1 scf7180000184278 99.34 True fake: scaffold gap size wrong estimation (local) 19445233 19445740 1318110 1317603 CM091751.1 scf7180000184278 98.62 True indel: indel (<= 5bp) 19444585 19445220 1318760 1318125 CM091751.1 scf7180000184278 98.43 True indel: indel (<= 5bp) 19443485 19444559 1319864 1318790 CM091751.1 scf7180000184278 99.26 True fake: scaffold gap size wrong estimation (local) 19439921 19442997 1323448 1320336 CM091751.1 scf7180000184278 97.99 True fake: scaffold gap size wrong estimation (local) 19430480 19438204 1332373 1324900 CM091751.1 scf7180000184278 95.27 True fake: scaffold gap size wrong estimation (local) 19427802 19430244 1335265 1332829 CM091751.1 scf7180000184278 98.73 True translocation, scaffold gap is present 1384487 1385051 1335960 1335396 CM091764.1 scf7180000184278 99.29 True fake: scaffold gap size wrong estimation (local) 1383232 1383853 1337579 1336958 CM091764.1 scf7180000184278 99.68 True fake: scaffold gap size wrong estimation (local) 1379785 1381312 1340238 1338711 CM091764.1 scf7180000184278 100.0 True fake: scaffold gap size wrong estimation (local) 1378003 1378639 1341974 1341349 CM091764.1 scf7180000184278 98.22 True translocation, scaffold gap is present 4563675 4564946 1343276 1344556 CM091754.1 scf7180000184278 96.57 True fake: scaffold gap size wrong estimation (local) 4567117 4569357 1346255 1348495 CM091754.1 scf7180000184278 99.96 True translocation, scaffold gap is present 4459292 4461799 1351053 1348546 CM091768.1 scf7180000184278 100.0 True fake: scaffold gap size wrong estimation (local) 4452747 4457535 1356909 1351920 CM091768.1 scf7180000184278 96.76 True translocation, scaffold gap is present 3983834 3985318 1357181 1358665 CM091752.1 scf7180000184278 99.93 True fake: scaffold gap size wrong estimation (local) 3985599 3993737 1358844 1366939 CM091752.1 scf7180000184278 99.36 True fake: not a misassembly (possible transposable element) 4446401 4451398 1372021 1366990 CM091768.1 scf7180000184278 99.48 True fake: not a misassembly (possible transposable element) 3994607 3995199 1372601 1373195 CM091752.1 scf7180000184278 97.31 True translocation, scaffold gap is present 4445238 4446399 1374522 1373349 CM091768.1 scf7180000184278 99.91 True fake: not a misassembly (possible transposable element) 6083550 6084134 1375003 1375587 CM091754.1 scf7180000184278 98.46 True fake: not a misassembly (possible transposable element) 4441487 4442391 1378562 1377658 CM091768.1 scf7180000184278 100.0 True fake: scaffold gap size wrong estimation (local) 4438049 4439056 1381539 1380500 CM091768.1 scf7180000184278 98.82 True relocation, scaffold gap is present, inconsistency = 37339 4399645 4400193 1382604 1382056 CM091768.1 scf7180000184278 95.81 True indel: indel (> 5bp) 4398181 4399591 1384015 1382605 CM091768.1 scf7180000184278 99.93 True fake: scaffold gap size wrong estimation (local) 4395245 4397417 1386629 1384457 CM091768.1 scf7180000184278 99.68 True relocation, inconsistency = 159038 4556456 4557273 1386630 1387440 CM091768.1 scf7180000184278 99.2 True relocation, scaffold gap is present, inconsistency = 119372 4435651 4437035 1388873 1387489 CM091768.1 scf7180000184278 99.57 True indel: indel (<= 5bp) 4433747 4435650 1390778 1388875 CM091768.1 scf7180000184278 98.95 True local misassembly 4432178 4432904 1391505 1390779 CM091768.1 scf7180000184278 98.55 True fake: not a misassembly (possible transposable element) 4390587 4395123 1396041 1391506 CM091768.1 scf7180000184278 99.56 True fake: not a misassembly (possible transposable element) 4429084 4430176 1397901 1396809 CM091768.1 scf7180000184278 100.0 True fake: not a misassembly (possible transposable element) 4389072 4390166 1399045 1397927 CM091768.1 scf7180000184278 99.64 True fake: not a misassembly (possible transposable element) 4427744 4429071 1400418 1399091 CM091768.1 scf7180000184278 99.85 True fake: scaffold gap size wrong estimation (local) 4426243 4427518 1401808 1400533 CM091768.1 scf7180000184278 97.41 True indel: indel (> 5bp) 4425514 4426231 1402526 1401809 CM091768.1 scf7180000184278 100.0 True fake: scaffold gap size wrong estimation (local) 4424347 4425513 1404210 1403044 CM091768.1 scf7180000184278 97.77 True indel: indel (> 5bp) 4420036 4424326 1408501 1404211 CM091768.1 scf7180000184278 99.67 True fake: scaffold gap size wrong estimation (local) 4418447 4420035 1410115 1408527 CM091768.1 scf7180000184278 99.5 True fake: scaffold gap size wrong estimation (local) 4417471 4418446 1411103 1410128 CM091768.1 scf7180000184278 99.59 True fake: scaffold gap size wrong estimation (local) 4414553 4417470 1414439 1411522 CM091768.1 scf7180000184278 99.76 True relocation, inconsistency = 542721 3869684 3871831 1414440 1416587 CM091768.1 scf7180000184278 98.93 True fake: scaffold gap size wrong estimation (local) 3872295 3873129 1417707 1418541 CM091768.1 scf7180000184278 100.0 True fake: scaffold gap size wrong estimation (local) 3873929 3874954 1418927 1419949 CM091768.1 scf7180000184278 98.83 True translocation 249860 250610 1420114 1420864 CM091752.1 scf7180000184278 99.73 True indel: indel (<= 5bp) 250611 251830 1420866 1422085 CM091752.1 scf7180000184278 99.51 True indel: indel (<= 5bp) 251874 252582 1422131 1422839 CM091752.1 scf7180000184278 99.72 True fake: scaffold gap size wrong estimation (local) 254257 258274 1424235 1428257 CM091752.1 scf7180000184278 98.88 True local misassembly 259304 259893 1429332 1429921 CM091752.1 scf7180000184278 99.15 True indel: indel (> 5bp) 259914 260701 1429922 1430709 CM091752.1 scf7180000184278 98.98 True indel: indel (<= 5bp) 261156 262143 1431161 1432148 CM091752.1 scf7180000184278 97.67 True local misassembly 262676 264438 1432282 1434044 CM091752.1 scf7180000184278 99.55 True local misassembly 265158 265931 1434768 1435541 CM091752.1 scf7180000184278 98.71 True indel: stretch of mismatches 266066 266684 1435676 1436294 CM091752.1 scf7180000184278 99.03 True fake: scaffold gap size wrong estimation (local) 267299 268399 1436836 1437936 CM091752.1 scf7180000184278 99.64 True indel: indel (<= 5bp) 268400 269667 1437938 1439205 CM091752.1 scf7180000184278 99.53 True translocation 14642933 14644156 1440978 1439755 CM091758.1 scf7180000184278 98.53 True indel: indel (<= 5bp) 14641701 14642932 1442211 1440980 CM091758.1 scf7180000184278 99.19 True local misassembly 14637544 14640529 1445674 1442689 CM091758.1 scf7180000184278 99.43 True fake: scaffold gap size wrong estimation (local) 14635256 14636951 1447523 1445828 CM091758.1 scf7180000184278 99.53 True indel: indel (> 5bp) 14634087 14634824 1448706 1447969 CM091758.1 scf7180000184278 98.92 True local misassembly 14629862 14632968 1452464 1449358 CM091758.1 scf7180000184278 99.84 True local misassembly 14626916 14627966 1453978 1452928 CM091758.1 scf7180000184278 99.62 True fake: scaffold gap size wrong estimation (local) 14595539 14625195 1484691 1455297 CM091758.1 scf7180000184278 98.58 True fake: scaffold gap size wrong estimation (local) 14575416 14594553 1504486 1485311 CM091758.1 scf7180000184278 99.1 True indel: indel (> 5bp) 14556364 14575223 1523261 1504730 CM091758.1 scf7180000184278 97.61 True translocation, scaffold gap is present 4547695 4549147 1524756 1523330 CM091768.1 scf7180000184278 98.08 True fake: scaffold gap size wrong estimation (local) 4544751 4546267 1528557 1527056 CM091768.1 scf7180000184278 98.99 True fake: scaffold gap size wrong estimation (local) 4541694 4542957 1530905 1529642 CM091768.1 scf7180000184278 98.42 True local misassembly 4538532 4541422 1533796 1530906 CM091768.1 scf7180000184278 98.86 True relocation, scaffold gap is present, inconsistency = 206778 4330901 4331733 1533817 1534649 CM091768.1 scf7180000184278 100.0 True fake: scaffold gap size wrong estimation (local) 4335075 4335718 1538152 1538795 CM091768.1 scf7180000184278 99.69 True translocation, scaffold gap is present 367607 370737 1542070 1538922 CM091763.1 scf7180000184278 99.71 True fake: scaffold gap size wrong estimation (local) 354122 367469 1555521 1542174 CM091763.1 scf7180000184278 99.96 True fake: scaffold gap size wrong estimation (local) 342220 352768 1566836 1556311 CM091763.1 scf7180000184278 99.74 True fake: scaffold gap size wrong estimation (local) 312207 341440 1596616 1567428 CM091763.1 scf7180000184278 99.81 True fake: scaffold gap size wrong estimation (local) 295348 310814 1612640 1597232 CM091763.1 scf7180000184278 97.25 True fake: scaffold gap size wrong estimation (local) 291505 294190 1616232 1613546 CM091763.1 scf7180000184278 99.81 True fake: not a misassembly (possible transposable element) 37262 38865 1618165 1619798 CM091755.1 scf7180000184278 99.38 True fake: not a misassembly (possible transposable element) 284376 290683 1626124 1619819 CM091763.1 scf7180000184278 99.75 True fake: not a misassembly (possible transposable element) 40927 42204 1626597 1627875 CM091755.1 scf7180000184278 99.77 True fake: not a misassembly (possible transposable element) 282124 282793 1629190 1628521 CM091763.1 scf7180000184278 99.7 True fake: scaffold gap size wrong estimation (local) 281307 281899 1630224 1629632 CM091763.1 scf7180000184278 99.83 True fake: scaffold gap size wrong estimation (local) 266624 281140 1645170 1630683 CM091763.1 scf7180000184278 99.72 True fake: scaffold gap size wrong estimation (local) 263553 266255 1648045 1645343 CM091763.1 scf7180000184278 100.0 True translocation, scaffold gap is present 229457 238755 1657549 1648459 CM091761.1 scf7180000184278 98.26 True fake: scaffold gap size wrong estimation (local) 225336 228494 1660917 1657825 CM091761.1 scf7180000184278 97.69 True fake: scaffold gap size wrong estimation (local) 214378 224682 1671357 1661293 CM091761.1 scf7180000184278 97.33 True fake: scaffold gap size wrong estimation (local) 200946 213672 1685126 1671800 CM091761.1 scf7180000184278 99.41 True indel: indel (<= 5bp) 174340 200727 1711094 1685348 CM091761.1 scf7180000184278 97.16 True translocation, scaffold gap is present 975200 977597 1713521 1711120 CM091754.1 scf7180000184278 99.09 True fake: scaffold gap size wrong estimation (local) 972855 974128 1715232 1713957 CM091754.1 scf7180000184278 99.22 True fake: scaffold gap size wrong estimation (local) 969738 971985 1718190 1715952 CM091754.1 scf7180000184278 98.74 True translocation, scaffold gap is present 169839 171393 1719760 1718211 CM091761.1 scf7180000184278 99.29 True fake: scaffold gap size wrong estimation (local) 165492 168359 1723387 1720519 CM091761.1 scf7180000184278 99.97 True fake: scaffold gap size wrong estimation (local) 164267 165385 1724588 1723465 CM091761.1 scf7180000184278 96.53 True fake: scaffold gap size wrong estimation (local) 162011 162750 1725938 1725199 CM091761.1 scf7180000184278 100.0 True fake: scaffold gap size wrong estimation (local) 160061 160588 1727657 1727130 CM091761.1 scf7180000184278 98.86 True fake: scaffold gap size wrong estimation (local) 153192 159927 1734571 1728079 CM091761.1 scf7180000184278 96.26 True translocation, scaffold gap is present 1407349 1408036 1735268 1734592 CM091764.1 scf7180000184278 96.26 True fake: scaffold gap size wrong estimation (local) 1404781 1406468 1738406 1736728 CM091764.1 scf7180000184278 98.86 True fake: scaffold gap size wrong estimation (local) 1402320 1403004 1740635 1739905 CM091764.1 scf7180000184278 95.92 True fake: scaffold gap size wrong estimation (local) 1400886 1401425 1742474 1741935 CM091764.1 scf7180000184278 100.0 True fake: scaffold gap size wrong estimation (local) 1398496 1399109 1745193 1744579 CM091764.1 scf7180000184278 99.84 True fake: not a misassembly (possible transposable element) 1350928 1351485 1747286 1746735 CM091764.1 scf7180000184278 97.31 True fake: not a misassembly (possible transposable element) 1396103 1396898 1748457 1747662 CM091764.1 scf7180000184278 99.87 True relocation, scaffold gap is present, inconsistency = 45712 1248207 1350275 1850376 1748573 CM091764.1 scf7180000184278 98.66 True fake: scaffold gap size wrong estimation (local) 1247142 1247958 1851763 1850947 CM091764.1 scf7180000184278 98.9 True translocation, scaffold gap is present 71094 72521 1852447 1853874 CM091763.1 scf7180000184278 100.0 True fake: scaffold gap size wrong estimation (local) 74292 74911 1855345 1855965 CM091763.1 scf7180000184278 99.68 True fake: scaffold gap size wrong estimation (local) 75627 76776 1856712 1857861 CM091763.1 scf7180000184278 100.0 True fake: scaffold gap size wrong estimation (local) 77700 79786 1858825 1860912 CM091763.1 scf7180000184278 99.9 True fake: scaffold gap size wrong estimation (local) 80528 85231 1861360 1866075 CM091763.1 scf7180000184278 99.0 True translocation, scaffold gap is present 7588724 7589932 1867730 1866521 CM091767.1 scf7180000184278 97.3 True fake: scaffold gap size wrong estimation (local) 7585916 7586925 1870341 1869327 CM091767.1 scf7180000184278 99.21 True translocation, scaffold gap is present 4555715 4559382 1877004 1873341 CM091754.1 scf7180000184278 99.84 True fake: scaffold gap size wrong estimation (local) 4554094 4555464 1879103 1877733 CM091754.1 scf7180000184278 99.93 True fake: scaffold gap size wrong estimation (local) 4548118 4553479 1884635 1879274 CM091754.1 scf7180000184278 99.96 True fake: scaffold gap size wrong estimation (local) 4539062 4546372 1892838 1885526 CM091754.1 scf7180000184278 99.85 True indel: stretch of mismatches 4537499 4538778 1894446 1893122 CM091754.1 scf7180000184278 97.93 True fake: scaffold gap size wrong estimation (local) 4534219 4536433 1897670 1895439 CM091754.1 scf7180000184278 99.82 True fake: scaffold gap size wrong estimation (local) 4524335 4533327 1907086 1898065 CM091754.1 scf7180000184278 99.82 True fake: scaffold gap size wrong estimation (local) 4521764 4523895 1909466 1907308 CM091754.1 scf7180000184278 99.63 True translocation, scaffold gap is present 3998091 3999177 1910543 1911634 CM091752.1 scf7180000184278 99.91 True fake: scaffold gap size wrong estimation (local) 4000426 4003778 1911997 1915349 CM091752.1 scf7180000184278 99.94 True fake: not a misassembly (possible transposable element) 15480092 15480782 1916114 1915424 CM091757.1 scf7180000184278 100.0 True fake: not a misassembly (possible transposable element) 4005972 4006984 1917179 1918184 CM091752.1 scf7180000184278 98.53 True translocation 15472978 15477828 1923049 1918185 CM091757.1 scf7180000184278 99.96 True fake: scaffold gap size wrong estimation (local) 15470588 15471197 1924872 1924263 CM091757.1 scf7180000184278 99.67 True fake: not a misassembly (possible transposable element) 4007826 4009713 1925016 1926899 CM091752.1 scf7180000184278 98.73 True fake: not a misassembly (possible transposable element) 15468929 15469902 1928347 1927365 CM091757.1 scf7180000184278 99.9 True translocation, scaffold gap is present 4374232 4375382 1928398 1929548 CM091768.1 scf7180000184278 99.83 True fake: scaffold gap size wrong estimation (local) 4375383 4375888 1931378 1931883 CM091768.1 scf7180000184278 100.0 True fake: scaffold gap size wrong estimation (local) 4377234 4377905 1932565 1933236 CM091768.1 scf7180000184278 99.7 True fake: scaffold gap size wrong estimation (local) 4378310 4380496 1934103 1936289 CM091768.1 scf7180000184278 99.77 True fake: scaffold gap size wrong estimation (local) 4381367 4383394 1937299 1939327 CM091768.1 scf7180000184278 99.75 True translocation, scaffold gap is present 2963891 2964807 1940625 1939709 CM091752.1 scf7180000184278 99.89 True fake: not a misassembly (possible transposable element) 15464610 15466354 1942420 1940676 CM091757.1 scf7180000184278 100.0 True fake: not a misassembly (possible transposable element) 2960050 2963484 1945968 1942512 CM091752.1 scf7180000184278 99.85 True translocation, scaffold gap is present 15457079 15463686 1952794 1946019 CM091757.1 scf7180000184278 97.47 True fake: not a misassembly (possible transposable element) 1354123 1354669 1953394 1952848 CM091764.1 scf7180000184278 96.89 True fake: not a misassembly (possible transposable element) 15454376 15455056 1954277 1953597 CM091757.1 scf7180000184278 99.56 True translocation, scaffold gap is present 17126268 17127208 1954330 1955271 CM091752.1 scf7180000184278 98.16 True fake: scaffold gap size wrong estimation (local) 17128929 17129990 1956848 1957901 CM091752.1 scf7180000184278 96.14 True local misassembly 17128447 17129022 1958363 1958938 CM091752.1 scf7180000184278 100.0 True translocation, scaffold gap is present 4514654 4515484 1960284 1959455 CM091754.1 scf7180000184278 99.88 True fake: scaffold gap size wrong estimation (local) 4512931 4513978 1962294 1961247 CM091754.1 scf7180000184278 100.0 True fake: scaffold gap size wrong estimation (local) 4510215 4511475 1965034 1963773 CM091754.1 scf7180000184278 99.84 True inversion, scaffold gap is present 4508077 4508685 1965096 1965715 CM091754.1 scf7180000184278 99.67 True translocation, scaffold gap is present 4055968 4057921 1965766 1967761 CM091752.1 scf7180000184278 98.42 True fake: scaffold gap size wrong estimation (local) 4057993 4058497 1967883 1968386 CM091752.1 scf7180000184278 99.8 True translocation, scaffold gap is present 15485519 15486451 1969626 1968694 CM091757.1 scf7180000184278 99.89 True translocation, scaffold gap is present 5376681 5381519 1970537 1975375 CM091768.1 scf7180000184278 100.0 True fake: scaffold gap size wrong estimation (local) 5381844 5386679 1975646 1980481 CM091768.1 scf7180000184278 100.0 True fake: scaffold gap size wrong estimation (local) 5387852 5390126 1981504 1983778 CM091768.1 scf7180000184278 100.0 True fake: scaffold gap size wrong estimation (local) 5391082 5394502 1985115 1988531 CM091768.1 scf7180000184278 99.85 True fake: scaffold gap size wrong estimation (local) 5397703 5398729 1990845 1991871 CM091768.1 scf7180000184278 99.9 True fake: scaffold gap size wrong estimation (local) 5399453 5401226 1992993 1994748 CM091768.1 scf7180000184278 98.12 True translocation, scaffold gap is present 11521095 11521615 1995323 1994803 CM091765.1 scf7180000184278 98.27 True fake: scaffold gap size wrong estimation (local) 11518982 11520698 1998417 1996700 CM091765.1 scf7180000184278 99.88 True fake: scaffold gap size wrong estimation (local) 11516505 11518237 2000950 1999218 CM091765.1 scf7180000184278 99.88 True fake: scaffold gap size wrong estimation (local) 11514901 11516132 2002758 2001522 CM091765.1 scf7180000184278 99.75 True translocation, scaffold gap is present 4963277 4964557 2004091 2002819 CM091768.1 scf7180000184278 99.29 True fake: scaffold gap size wrong estimation (local) 4956952 4961731 2009672 2004896 CM091768.1 scf7180000184278 99.9 True translocation, scaffold gap is present 16725751 16727552 2009750 2011551 CM091756.1 scf7180000184278 100.0 True fake: scaffold gap size wrong estimation (local) 16727956 16731848 2012336 2016228 CM091756.1 scf7180000184278 99.87 True relocation, scaffold gap is present, inconsistency = -61995 16669904 16688065 2016279 2034441 CM091756.1 scf7180000184278 99.94 True fake: scaffold gap size wrong estimation (local) 16688670 16697800 2035263 2044395 CM091756.1 scf7180000184278 99.93 True relocation, scaffold gap is present, inconsistency = 36662 16734513 16739316 2044446 2049249 CM091756.1 scf7180000184278 100.0 True indel: indel (<= 5bp) 16739389 16740143 2049324 2050078 CM091756.1 scf7180000184278 99.34 True fake: scaffold gap size wrong estimation (local) 16740628 16742884 2050337 2052593 CM091756.1 scf7180000184278 99.91 True relocation, scaffold gap is present, inconsistency = -43796 16699116 16721924 2052621 2075573 CM091756.1 scf7180000184278 98.82 True relocation, scaffold gap is present, inconsistency = 24056 16746040 16750469 2075633 2080061 CM091756.1 scf7180000184278 99.93 True relocation, scaffold gap is present, inconsistency = 10109 16760778 16762553 2080261 2082039 CM091756.1 scf7180000184278 99.27 True fake: scaffold gap size wrong estimation (local) 16763339 16763927 2082705 2083293 CM091756.1 scf7180000184278 99.32 True fake: scaffold gap size wrong estimation (local) 16764387 16764965 2083770 2084348 CM091756.1 scf7180000184278 100.0 True local misassembly 16765125 16765741 2084349 2084965 CM091756.1 scf7180000184278 96.6 True relocation, scaffold gap is present, inconsistency = -15507 16750421 16757348 2085152 2092162 CM091756.1 scf7180000184278 98.97 True fake: scaffold gap size wrong estimation (extensive) 16766091 16782069 2092213 2108075 CM091756.1 scf7180000184278 99.16 True fake: scaffold gap size wrong estimation (local) 16782728 16786171 2108610 2112031 CM091756.1 scf7180000184278 99.17 True fake: scaffold gap size wrong estimation (local) 16787888 16789459 2113210 2114776 CM091756.1 scf7180000184278 99.48 True fake: scaffold gap size wrong estimation (local) 16789962 16792448 2115483 2117915 CM091756.1 scf7180000184278 96.88 True fake: scaffold gap size wrong estimation (local) 16792550 16796240 2118548 2122122 CM091756.1 scf7180000184278 95.67 True fake: scaffold gap size wrong estimation (local) 16797905 16799755 2122845 2124695 CM091756.1 scf7180000184278 99.84 True fake: scaffold gap size wrong estimation (local) 16800324 16803211 2124847 2127765 CM091756.1 scf7180000184278 98.01 True fake: scaffold gap size wrong estimation (local) 16804401 16805376 2128586 2129568 CM091756.1 scf7180000184278 99.56 True fake: scaffold gap size wrong estimation (local) 16805972 16807248 2129986 2131262 CM091756.1 scf7180000184278 99.92 True fake: not a misassembly (possible transposable element) 16273450 16275710 2134028 2131765 CM091757.1 scf7180000184278 100.0 True fake: not a misassembly (possible transposable element) 16811531 16825488 2134095 2147869 CM091756.1 scf7180000184278 98.53 True translocation, scaffold gap is present 8203887 8204448 2150511 2151072 CM091767.1 scf7180000184278 98.58 True fake: scaffold gap size wrong estimation (local) 8204748 8206309 2151338 2152899 CM091767.1 scf7180000184278 99.94 True fake: scaffold gap size wrong estimation (local) 8206310 8207590 2153245 2154525 CM091767.1 scf7180000184278 100.0 True translocation, scaffold gap is present 16831290 16840292 2154576 2163580 CM091756.1 scf7180000184278 99.97 True translocation, scaffold gap is present 8207203 8214091 2163756 2170644 CM091767.1 scf7180000184278 99.65 True translocation, scaffold gap is present 1308143 1309063 2172277 2171341 CM091763.1 scf7180000184278 97.55 True indel: indel (> 5bp) 1278953 1308056 2201481 2172372 CM091763.1 scf7180000184278 99.86 True translocation, scaffold gap is present 2921807 2922415 2203932 2203324 CM091752.1 scf7180000184278 98.85 True fake: scaffold gap size wrong estimation (local) 2919609 2921081 2206607 2205138 CM091752.1 scf7180000184278 99.66 True fake: scaffold gap size wrong estimation (local) 2918328 2919047 2208192 2207473 CM091752.1 scf7180000184278 99.83 True local misassembly 2911018 2912807 2210025 2208193 CM091752.1 scf7180000184278 98.76 True relocation, scaffold gap is present, inconsistency = 2516902 392615 393694 2210447 2211528 CM091752.1 scf7180000184278 98.89 True indel: indel (> 5bp) 393766 394755 2211660 2212651 CM091752.1 scf7180000184278 97.3 True fake: scaffold gap size wrong estimation (local) 394985 397398 2213059 2215472 CM091752.1 scf7180000184278 99.17 True fake: scaffold gap size wrong estimation (local) 397555 404576 2215622 2222638 CM091752.1 scf7180000184278 98.22 True fake: scaffold gap size wrong estimation (local) 404778 410582 2222784 2228606 CM091752.1 scf7180000184278 98.66 True fake: scaffold gap size wrong estimation (local) 411405 411937 2229521 2230053 CM091752.1 scf7180000184278 98.87 True fake: scaffold gap size wrong estimation (local) 413882 415263 2231564 2232947 CM091752.1 scf7180000184278 98.55 True fake: scaffold gap size wrong estimation (local) 415665 416425 2233523 2234283 CM091752.1 scf7180000184278 99.61 True fake: scaffold gap size wrong estimation (local) 416981 417525 2234999 2235543 CM091752.1 scf7180000184278 99.08 True fake: scaffold gap size wrong estimation (local) 417526 419924 2235633 2238031 CM091752.1 scf7180000184278 99.62 True indel: indel (<= 5bp) 419925 420888 2238033 2238996 CM091752.1 scf7180000184278 99.27 True indel: indel (<= 5bp) 421293 422832 2239406 2240945 CM091752.1 scf7180000184278 99.68 True local misassembly 423876 424629 2242023 2242776 CM091752.1 scf7180000184278 99.73 True local misassembly 425243 425828 2243403 2243988 CM091752.1 scf7180000184278 99.49 True local misassembly 427010 428042 2243989 2245021 CM091752.1 scf7180000184278 99.42 True fake: scaffold gap size wrong estimation (local) 428137 428791 2245135 2245789 CM091752.1 scf7180000184278 100.0 True local misassembly 429527 430263 2246527 2247263 CM091752.1 scf7180000184278 99.32 True local misassembly 430851 431541 2247851 2248541 CM091752.1 scf7180000184278 100.0 True indel: indel (<= 5bp) 431978 433100 2248974 2250096 CM091752.1 scf7180000184278 99.82 True indel: indel (<= 5bp) 433101 434209 2250098 2251206 CM091752.1 scf7180000184278 98.92 True fake: scaffold gap size wrong estimation (local) 435322 435876 2252354 2252908 CM091752.1 scf7180000184278 98.74 True fake: scaffold gap size wrong estimation (local) 436622 440800 2253592 2257766 CM091752.1 scf7180000184278 98.28 True fake: scaffold gap size wrong estimation (local) 441441 444375 2258192 2261128 CM091752.1 scf7180000184278 99.35 True fake: scaffold gap size wrong estimation (local) 445114 457435 2261433 2273761 CM091752.1 scf7180000184278 95.78 True fake: scaffold gap size wrong estimation (local) 462904 513115 2274716 2324609 CM091752.1 scf7180000184278 99.15 True indel: stretch of mismatches 513249 601582 2324743 2412459 CM091752.1 scf7180000184278 98.71 True fake: scaffold gap size wrong estimation (local) 601690 616379 2412543 2427258 CM091752.1 scf7180000184278 99.43 True fake: not a misassembly (possible transposable element) 11414536 11415352 2428828 2428012 CM091765.1 scf7180000184278 96.33 True fake: not a misassembly (possible transposable element) 616358 689751 2429679 2502371 CM091752.1 scf7180000184278 98.73 True fake: scaffold gap size wrong estimation (local) 689876 711639 2502489 2524181 CM091752.1 scf7180000184278 99.6 True fake: scaffold gap size wrong estimation (local) 712499 719302 2524864 2531668 CM091752.1 scf7180000184278 99.97 True fake: scaffold gap size wrong estimation (local) 719578 730076 2532129 2542626 CM091752.1 scf7180000184278 99.31 True fake: not a misassembly (possible transposable element) 72127 72909 2543457 2542675 CM091752.1 scf7180000184278 100.0 True fake: not a misassembly (possible transposable element) 730011 735709 2543458 2549086 CM091752.1 scf7180000184278 97.1 True translocation, scaffold gap is present 1275995 1277012 2550123 2549107 CM091763.1 scf7180000184278 99.9 True indel: stretch of mismatches 1274814 1275937 2551303 2550181 CM091763.1 scf7180000184278 99.73 True translocation, scaffold gap is present 742619 748254 2551354 2557009 CM091752.1 scf7180000184278 99.06 True local misassembly 749825 757868 2557010 2565178 CM091752.1 scf7180000184278 97.93 True fake: scaffold gap size wrong estimation (local) 758081 760399 2565317 2567635 CM091752.1 scf7180000184278 99.78 True indel: indel (<= 5bp) 760400 761188 2567639 2568427 CM091752.1 scf7180000184278 99.11 True local misassembly 761745 762289 2568520 2569064 CM091752.1 scf7180000184278 98.35 True fake: scaffold gap size wrong estimation (local) 762879 763618 2569651 2570390 CM091752.1 scf7180000184278 99.73 True indel: indel (> 5bp) 763947 764596 2570702 2571351 CM091752.1 scf7180000184278 99.54 True indel: indel (<= 5bp) 764597 765947 2571353 2572703 CM091752.1 scf7180000184278 99.41 True indel: indel (<= 5bp) 766386 766916 2573140 2573670 CM091752.1 scf7180000184278 99.81 True fake: scaffold gap size wrong estimation (local) 767402 768709 2574172 2575479 CM091752.1 scf7180000184278 99.31 True indel: indel (<= 5bp) 768711 769565 2575480 2576334 CM091752.1 scf7180000184278 99.65 True fake: scaffold gap size wrong estimation (local) 770198 773087 2577203 2580092 CM091752.1 scf7180000184278 99.45 True fake: scaffold gap size wrong estimation (local) 772040 773085 2580288 2581333 CM091752.1 scf7180000184278 99.71 True fake: scaffold gap size wrong estimation (local) 773327 774907 2581659 2583239 CM091752.1 scf7180000184278 99.68 True indel: indel (<= 5bp) 774909 775692 2583240 2584023 CM091752.1 scf7180000184278 99.74 True indel: indel (<= 5bp) 775693 776547 2584026 2584880 CM091752.1 scf7180000184278 99.65 True indel: indel (<= 5bp) 776870 777719 2585198 2586047 CM091752.1 scf7180000184278 99.76 True indel: indel (<= 5bp) 778151 779823 2586475 2588147 CM091752.1 scf7180000184278 98.86 True local misassembly 780412 781865 2588489 2589942 CM091752.1 scf7180000184278 99.59 True local misassembly 782758 784885 2590835 2592962 CM091752.1 scf7180000184278 99.53 True indel: indel (> 5bp) 784898 785549 2592963 2593614 CM091752.1 scf7180000184278 99.54 True indel: indel (<= 5bp) 785551 786281 2593615 2594345 CM091752.1 scf7180000184278 98.63 True indel: indel (<= 5bp) 786547 787046 2594613 2595112 CM091752.1 scf7180000184278 99.2 True indel: indel (<= 5bp) 787048 788679 2595113 2596744 CM091752.1 scf7180000184278 99.69 True indel: indel (<= 5bp) 788680 789426 2596746 2597492 CM091752.1 scf7180000184278 99.6 True local misassembly 790340 791123 2597969 2598752 CM091752.1 scf7180000184278 99.23 True indel: indel (<= 5bp) 791125 791912 2598753 2599540 CM091752.1 scf7180000184278 98.6 True local misassembly 794132 795425 2599990 2601283 CM091752.1 scf7180000184278 99.54 True indel: indel (<= 5bp) 795431 796340 2601284 2602193 CM091752.1 scf7180000184278 99.34 True indel: indel (<= 5bp) 796341 797549 2602195 2603403 CM091752.1 scf7180000184278 99.67 True indel: indel (<= 5bp) 797550 798668 2603405 2604523 CM091752.1 scf7180000184278 99.82 True indel: indel (<= 5bp) 798822 799397 2604676 2605251 CM091752.1 scf7180000184278 99.83 True indel: indel (<= 5bp) 799583 800877 2605439 2606733 CM091752.1 scf7180000184278 99.92 True indel: stretch of mismatches 800993 804807 2606849 2610663 CM091752.1 scf7180000184278 99.79 True indel: indel (<= 5bp) 804811 805351 2610664 2611204 CM091752.1 scf7180000184278 99.82 True indel: indel (> 5bp) 805352 806288 2611211 2612147 CM091752.1 scf7180000184278 98.83 True indel: indel (<= 5bp) 806289 811097 2612149 2616957 CM091752.1 scf7180000184278 99.69 True local misassembly 811185 817236 2616958 2623009 CM091752.1 scf7180000184278 99.6 True indel: indel (<= 5bp) 817635 819364 2623410 2625139 CM091752.1 scf7180000184278 99.71 True indel: indel (<= 5bp) 819588 820831 2625365 2626608 CM091752.1 scf7180000184278 99.44 True indel: indel (<= 5bp) 820832 821840 2626610 2627618 CM091752.1 scf7180000184278 99.8 True indel: indel (<= 5bp) 821841 824064 2627620 2629843 CM091752.1 scf7180000184278 99.91 True indel: stretch of mismatches 824286 825182 2630065 2630961 CM091752.1 scf7180000184278 99.78 True indel: indel (<= 5bp) 825326 825931 2631106 2631711 CM091752.1 scf7180000184278 99.5 True indel: indel (<= 5bp) 825932 827116 2631713 2632897 CM091752.1 scf7180000184278 98.99 True indel: indel (> 5bp) 827499 828333 2633294 2634128 CM091752.1 scf7180000184278 98.92 True local misassembly 828842 830484 2634343 2635985 CM091752.1 scf7180000184278 99.63 True indel: indel (<= 5bp) 830485 831133 2635987 2636635 CM091752.1 scf7180000184278 98.77 True indel: indel (<= 5bp) 831134 833050 2636637 2638553 CM091752.1 scf7180000184278 99.63 True fake: scaffold gap size wrong estimation (local) 834321 835162 2639710 2640551 CM091752.1 scf7180000184278 99.52 True fake: scaffold gap size wrong estimation (local) 836168 836710 2641295 2641837 CM091752.1 scf7180000184278 99.45 True local misassembly 838271 839055 2642281 2643065 CM091752.1 scf7180000184278 99.24 True indel: indel (> 5bp) 839128 839661 2643173 2643706 CM091752.1 scf7180000184278 99.44 True local misassembly 840418 841126 2644446 2645154 CM091752.1 scf7180000184278 99.58 True fake: scaffold gap size wrong estimation (local) 841427 842425 2645250 2646248 CM091752.1 scf7180000184278 99.7 True local misassembly 843010 843939 2646827 2647756 CM091752.1 scf7180000184278 98.71 True fake: scaffold gap size wrong estimation (local) 844781 845337 2648230 2648768 CM091752.1 scf7180000184278 95.88 True fake: not a misassembly (possible transposable element) 11413418 11414873 2650272 2648819 CM091765.1 scf7180000184278 99.66 True fake: not a misassembly (possible transposable element) 845558 846713 2650323 2651478 CM091752.1 scf7180000184278 98.7 True local misassembly 846714 847990 2651621 2652897 CM091752.1 scf7180000184278 96.71 True local misassembly 848776 850129 2653494 2654847 CM091752.1 scf7180000184278 99.11 True local misassembly 851138 851999 2655859 2656720 CM091752.1 scf7180000184278 98.84 True fake: scaffold gap size wrong estimation (local) 852699 882353 2657172 2686932 CM091752.1 scf7180000184278 98.38 True fake: not a misassembly (possible transposable element) 1272752 1274420 2689056 2687384 CM091763.1 scf7180000184278 97.11 True fake: not a misassembly (possible transposable element) 885068 886788 2690766 2692486 CM091752.1 scf7180000184278 99.54 True indel: indel (<= 5bp) 886793 887480 2692487 2693174 CM091752.1 scf7180000184278 99.71 True fake: scaffold gap size wrong estimation (local) 887481 888277 2693190 2693986 CM091752.1 scf7180000184278 98.75 True local misassembly 889351 890844 2695070 2696563 CM091752.1 scf7180000184278 99.2 True indel: indel (> 5bp) 890845 891553 2696574 2697282 CM091752.1 scf7180000184278 99.29 True indel: indel (> 5bp) 891560 892514 2697283 2698237 CM091752.1 scf7180000184278 99.9 True indel: indel (<= 5bp) 892967 893802 2698692 2699527 CM091752.1 scf7180000184278 99.76 True indel: indel (<= 5bp) 893803 896498 2699529 2702224 CM091752.1 scf7180000184278 99.74 True indel: indel (<= 5bp) 896658 897192 2702380 2702914 CM091752.1 scf7180000184278 99.44 True indel: indel (> 5bp) 897492 898908 2703197 2704613 CM091752.1 scf7180000184278 99.29 True indel: indel (> 5bp) 898922 899876 2704633 2705587 CM091752.1 scf7180000184278 99.69 True indel: indel (<= 5bp) 899877 900400 2705589 2706112 CM091752.1 scf7180000184278 99.43 True indel: indel (<= 5bp) 900401 902950 2706114 2708663 CM091752.1 scf7180000184278 99.29 True local misassembly 903453 904116 2709184 2709847 CM091752.1 scf7180000184278 99.55 True indel: indel (<= 5bp) 904117 904651 2709849 2710383 CM091752.1 scf7180000184278 98.88 True indel: indel (<= 5bp) 904652 906120 2710385 2711853 CM091752.1 scf7180000184278 99.52 True indel: indel (<= 5bp) 906121 906752 2711855 2712486 CM091752.1 scf7180000184278 99.53 True indel: stretch of mismatches 906823 908911 2712557 2714645 CM091752.1 scf7180000184278 99.62 True fake: scaffold gap size wrong estimation (local) 909318 909847 2715072 2715601 CM091752.1 scf7180000184278 99.62 True indel: indel (> 5bp) 910338 911410 2716086 2717158 CM091752.1 scf7180000184278 99.63 True indel: indel (<= 5bp) 911412 913386 2717159 2719133 CM091752.1 scf7180000184278 99.75 True indel: indel (> 5bp) 913396 916053 2719134 2721791 CM091752.1 scf7180000184278 99.85 True indel: indel (<= 5bp) 916542 917690 2722279 2723427 CM091752.1 scf7180000184278 99.74 True fake: scaffold gap size wrong estimation (local) 918906 926220 2727727 2735057 CM091752.1 scf7180000184278 99.41 True translocation 13799704 13801216 2735058 2736580 CM091755.1 scf7180000184278 99.07 True translocation, scaffold gap is present 8093896 8097226 2740009 2736647 CM091767.1 scf7180000184278 99.46 True translocation, scaffold gap is present 926191 939275 2740086 2753203 CM091752.1 scf7180000184278 99.4 True fake: scaffold gap size wrong estimation (local) 941103 943348 2753915 2756165 CM091752.1 scf7180000184278 99.08 True translocation 4336498 4368446 2756166 2787828 CM091760.1 scf7180000184278 98.31 True translocation 901746 903049 2789133 2787829 CM091752.1 scf7180000184278 99.08 True translocation, scaffold gap is present 8087514 8093150 2794827 2789184 CM091767.1 scf7180000184278 99.84 True translocation, scaffold gap is present 4368334 4372154 2794848 2798693 CM091760.1 scf7180000184278 98.78 True indel: indel (> 5bp) 4372246 4374583 2798853 2801182 CM091760.1 scf7180000184278 99.49 True fake: scaffold gap size wrong estimation (local) 4372247 4373338 2801763 2802854 CM091760.1 scf7180000184278 99.91 True fake: scaffold gap size wrong estimation (local) 4374330 4416985 2803508 2845854 CM091760.1 scf7180000184278 99.0 True translocation, scaffold gap is present 16842635 16844043 2846397 2847809 CM091756.1 scf7180000184278 97.81 True translocation, scaffold gap is present 460208 461237 2848387 2849413 CM091752.1 scf7180000184278 96.6 True translocation, scaffold gap is present 7922363 7923807 2850275 2851751 CM091767.1 scf7180000184278 96.45 True fake: scaffold gap size wrong estimation (local) 7924790 7928838 2852747 2856795 CM091767.1 scf7180000184278 99.9 True local misassembly 7929415 7929997 2856796 2857378 CM091767.1 scf7180000184278 96.05 True indel: indel (> 5bp) 7929998 7931092 2857390 2858484 CM091767.1 scf7180000184278 98.9 True translocation, scaffold gap is present 11484350 11485533 2859894 2858711 CM091765.1 scf7180000184278 100.0 True translocation, scaffold gap is present 8084467 8085157 2860656 2859968 CM091767.1 scf7180000184278 99.13 True relocation, scaffold gap is present, inconsistency = 152020 7931451 7932356 2860747 2861652 CM091767.1 scf7180000184278 100.0 True translocation, scaffold gap is present 11480839 11483143 2863977 2861673 CM091765.1 scf7180000184278 99.87 True fake: scaffold gap size wrong estimation (local) 11478131 11479886 2866933 2865177 CM091765.1 scf7180000184278 99.89 True translocation, scaffold gap is present 8082030 8083755 2868731 2866991 CM091767.1 scf7180000184278 99.77 True translocation, scaffold gap is present 16846205 16847044 2869932 2870771 CM091756.1 scf7180000184278 99.52 True translocation, scaffold gap is present 17400601 17404070 2874322 2870872 CM091751.1 scf7180000184278 98.58 True translocation, scaffold gap is present 8080549 8082034 2875860 2874375 CM091767.1 scf7180000184278 99.93 True translocation, scaffold gap is present 2950462 2952320 2877797 2875933 CM091752.1 scf7180000184278 99.35 True fake: scaffold gap size wrong estimation (local) 2948232 2949418 2880150 2878935 CM091752.1 scf7180000184278 97.53 True fake: scaffold gap size wrong estimation (local) 2947587 2948452 2881607 2880742 CM091752.1 scf7180000184278 100.0 True fake: scaffold gap size wrong estimation (local) 2946009 2947469 2883197 2881737 CM091752.1 scf7180000184278 100.0 True translocation, scaffold gap is present 17398171 17400234 2885745 2883702 CM091751.1 scf7180000184278 98.86 True translocation, scaffold gap is present 11207888 11208913 2886821 2885796 CM091765.1 scf7180000184278 99.9 True translocation, scaffold gap is present 3220033 3221148 2888141 2887026 CM091752.1 scf7180000184278 99.91 True fake: scaffold gap size wrong estimation (local) 3218190 3219026 2889814 2888978 CM091752.1 scf7180000184278 98.92 True translocation, scaffold gap is present 1446312 1447454 2892085 2890943 CM091764.1 scf7180000184278 99.91 True translocation, scaffold gap is present 11475270 11475790 2892656 2892136 CM091765.1 scf7180000184278 100.0 True fake: scaffold gap size wrong estimation (local) 11474551 11475179 2893933 2893273 CM091765.1 scf7180000184278 97.97 True translocation, scaffold gap is present 2955564 2979314 2918035 2894096 CM091768.1 scf7180000184278 98.37 True translocation 11467188 11469582 2920411 2918036 CM091765.1 scf7180000184278 98.94 True translocation, scaffold gap is present 17395941 17397257 2921782 2920468 CM091751.1 scf7180000184278 99.85 True translocation, scaffold gap is present 11471750 11473046 2924586 2923290 CM091765.1 scf7180000184278 99.92 True fake: not a misassembly (possible transposable element) 8929138 8929709 2925236 2924665 CM091767.1 scf7180000184278 96.33 True fake: not a misassembly (possible transposable element) 11465548 11466725 2926963 2925757 CM091765.1 scf7180000184278 98.9 True translocation, scaffold gap is present 8926638 8927214 2929693 2929117 CM091767.1 scf7180000184278 100.0 True fake: scaffold gap size wrong estimation (local) 8924411 8926521 2932385 2930275 CM091767.1 scf7180000184278 100.0 True relocation, scaffold gap is present, inconsistency = 903704 8018455 8020253 2934639 2932839 CM091767.1 scf7180000184278 99.83 True relocation, scaffold gap is present, inconsistency = 1058441 9078724 9079750 2934669 2935698 CM091767.1 scf7180000184278 99.51 True relocation, scaffold gap is present, inconsistency = 154269 8922805 8924369 2937348 2935784 CM091767.1 scf7180000184278 99.3 True translocation, scaffold gap is present 6405694 6407323 2939089 2937459 CM091768.1 scf7180000184278 99.2 True fake: not a misassembly (possible transposable element) 8073102 8079401 2945498 2939197 CM091767.1 scf7180000184278 99.92 True fake: not a misassembly (possible transposable element) 6400992 6405725 2950475 2945715 CM091768.1 scf7180000184278 99.52 True translocation, scaffold gap is present 8015492 8017451 2952689 2950730 CM091767.1 scf7180000184278 99.95 True relocation, scaffold gap is present, inconsistency = 79807 7932979 7933608 2954766 2955395 CM091767.1 scf7180000184278 97.78 True fake: not a misassembly (possible transposable element) 8069101 8072193 2958616 2955524 CM091767.1 scf7180000184278 99.94 True fake: not a misassembly (possible transposable element) 7933859 7934476 2958706 2959327 CM091767.1 scf7180000184278 98.87 True relocation, scaffold gap is present, inconsistency = 132456 8067325 8068631 2961026 2959720 CM091767.1 scf7180000184278 99.92 True fake: scaffold gap size wrong estimation (local) 8062573 8066094 2965949 2962428 CM091767.1 scf7180000184278 99.86 True fake: scaffold gap size wrong estimation (local) 8059566 8061652 2969035 2966949 CM091767.1 scf7180000184278 99.95 True fake: not a misassembly (possible transposable element) 8933631 8935692 2969086 2971147 CM091767.1 scf7180000184278 99.95 True fake: not a misassembly (possible transposable element) 8055146 8058638 2974690 2971198 CM091767.1 scf7180000184278 99.94 True fake: not a misassembly (possible transposable element) 8941445 8942040 2974741 2975336 CM091767.1 scf7180000184278 99.83 True fake: not a misassembly (possible transposable element) 8053291 8054637 2976711 2975357 CM091767.1 scf7180000184278 99.92 True relocation, scaffold gap is present, inconsistency = 888834 8943541 8945553 2976781 2978793 CM091767.1 scf7180000184278 100.0 True fake: not a misassembly (possible transposable element) 9045436 9047178 2980586 2978844 CM091767.1 scf7180000184278 99.83 True fake: not a misassembly (possible transposable element) 8945757 8954385 2980777 2989384 CM091767.1 scf7180000184278 99.62 True fake: scaffold gap size wrong estimation (local) 8954746 8955870 2989740 2990864 CM091767.1 scf7180000184278 98.04 True translocation, scaffold gap is present 16847821 16851177 2990915 2994274 CM091756.1 scf7180000184278 99.7 True translocation, scaffold gap is present 9043064 9044617 2996039 2994485 CM091767.1 scf7180000184278 99.74 True relocation, inconsistency = 85462 8956129 8957582 2996052 2997505 CM091767.1 scf7180000184278 99.25 True relocation, inconsistency = 271351 8678810 8684777 3003608 2997506 CM091767.1 scf7180000184278 97.78 True translocation, scaffold gap is present 5057180 5057681 3003735 3004238 CM091764.1 scf7180000184278 99.05 True translocation 15796667 15797643 3005215 3004239 CM091757.1 scf7180000184278 99.9 True fake: scaffold gap size wrong estimation (local) 15795747 15796522 3006414 3005639 CM091757.1 scf7180000184278 99.87 True fake: scaffold gap size wrong estimation (local) 15793425 15794841 3008794 3007378 CM091757.1 scf7180000184278 99.93 True fake: scaffold gap size wrong estimation (local) 15786906 15793608 3015947 3009225 CM091757.1 scf7180000184278 99.94 True translocation 9936405 9960680 3040223 3015948 CM091765.1 scf7180000184278 99.96 True fake: scaffold gap size wrong estimation (local) 9932991 9933511 3041551 3041031 CM091765.1 scf7180000184278 100.0 True fake: scaffold gap size wrong estimation (local) 9929734 9930271 3044314 3043777 CM091765.1 scf7180000184278 100.0 True indel: indel (> 5bp) 9928938 9929727 3045104 3044315 CM091765.1 scf7180000184278 99.87 True indel: indel (<= 5bp) 9926138 9928937 3047905 3045106 CM091765.1 scf7180000184278 99.96 True indel: indel (<= 5bp) 9923584 9926136 3050458 3047906 CM091765.1 scf7180000184278 99.96 True indel: indel (<= 5bp) 9921855 9923525 3052190 3050520 CM091765.1 scf7180000184278 99.94 True local misassembly 9915785 9918164 3054570 3052191 CM091765.1 scf7180000184278 99.58 True fake: not a misassembly (possible transposable element) 8067310 8068333 3055614 3054591 CM091757.1 scf7180000184278 99.72 True fake: not a misassembly (possible transposable element) 9913270 9915922 3058266 3055615 CM091765.1 scf7180000184278 99.81 True fake: scaffold gap size wrong estimation (local) 9901306 9913047 3070420 3058701 CM091765.1 scf7180000184278 99.62 True fake: scaffold gap size wrong estimation (local) 9898248 9899173 3073009 3072084 CM091765.1 scf7180000184278 99.89 True indel: indel (<= 5bp) 9889709 9898107 3081559 3073149 CM091765.1 scf7180000184278 99.53 True fake: not a misassembly (possible transposable element) 16851064 16853770 3082388 3085095 CM091756.1 scf7180000184278 99.96 True fake: not a misassembly (possible transposable element) 9886877 9887629 3086386 3085634 CM091765.1 scf7180000184278 99.87 True fake: scaffold gap size wrong estimation (local) 9885710 9886795 3087966 3086864 CM091765.1 scf7180000184278 100.0 True fake: not a misassembly (possible transposable element) 1082670 1083336 3088006 3088670 CM091761.1 scf7180000184278 97.92 True fake: not a misassembly (possible transposable element) 9884677 9885894 3089888 3088671 CM091765.1 scf7180000184278 99.59 True indel: indel (> 5bp) 9883841 9884670 3090718 3089889 CM091765.1 scf7180000184278 99.4 True indel: indel (> 5bp) 9882840 9883840 3091801 3090801 CM091765.1 scf7180000184278 98.9 True indel: indel (<= 5bp) 9881732 9882838 3092908 3091802 CM091765.1 scf7180000184278 95.3 True local misassembly 9879944 9881449 3094414 3092909 CM091765.1 scf7180000184278 99.14 True fake: scaffold gap size wrong estimation (local) 9878433 9879784 3096489 3095138 CM091765.1 scf7180000184278 98.67 True fake: not a misassembly (possible transposable element) 4953014 4955279 3096765 3099030 CM091768.1 scf7180000184278 99.91 True fake: not a misassembly (possible transposable element) 9869284 9874253 3106028 3101059 CM091765.1 scf7180000184278 99.56 True fake: scaffold gap size wrong estimation (local) 9864158 9868433 3110473 3106198 CM091765.1 scf7180000184278 99.98 True fake: not a misassembly (possible transposable element) 8046564 8049683 3113643 3110524 CM091767.1 scf7180000184278 99.94 True fake: not a misassembly (possible transposable element) 9862749 9863908 3114911 3113753 CM091765.1 scf7180000184278 99.91 True translocation, scaffold gap is present 8043081 8045792 3117673 3114962 CM091767.1 scf7180000184278 99.96 True fake: scaffold gap size wrong estimation (local) 8041874 8042995 3120237 3119116 CM091767.1 scf7180000184278 96.61 True translocation, scaffold gap is present 15763186 15763987 3120303 3121110 CM091752.1 scf7180000184278 97.16 True translocation, scaffold gap is present 16854681 16855321 3123609 3124249 CM091756.1 scf7180000184278 100.0 True translocation, scaffold gap is present 166364 168709 3128299 3130643 CM091753.1 scf7180000184278 99.91 True fake: not a misassembly (possible transposable element) 8040352 8041081 3131425 3130694 CM091767.1 scf7180000184278 97.68 True fake: not a misassembly (possible transposable element) 169654 170721 3132454 3133564 CM091753.1 scf7180000184278 98.61 True translocation, scaffold gap is present 15821260 15825058 3133615 3137411 CM091757.1 scf7180000184278 99.95 True fake: scaffold gap size wrong estimation (local) 15825176 15826809 3137501 3139134 CM091757.1 scf7180000184278 100.0 True translocation, scaffold gap is present 171270 176319 3139195 3144244 CM091753.1 scf7180000184278 99.98 True indel: indel (<= 5bp) 176405 182990 3144329 3150913 CM091753.1 scf7180000184278 99.95 True translocation, scaffold gap is present 16328577 16332450 3152714 3156584 CM091752.1 scf7180000184278 99.85 True translocation, scaffold gap is present 16010965 16011854 3156637 3157526 CM091757.1 scf7180000184278 99.21 True relocation, scaffold gap is present, inconsistency = -182445 15829626 15830163 3157743 3158280 CM091757.1 scf7180000184278 99.44 True fake: scaffold gap size wrong estimation (local) 15831078 15832213 3160598 3161733 CM091757.1 scf7180000184278 99.65 True relocation, scaffold gap is present, inconsistency = 182722 16015376 16016250 3162174 3163048 CM091757.1 scf7180000184278 100.0 True translocation, scaffold gap is present 8589440 8589939 3163649 3164156 CM091767.1 scf7180000184278 97.05 True translocation 15658162 15658949 3164157 3164944 CM091757.1 scf7180000184278 99.49 True fake: scaffold gap size wrong estimation (local) 15658950 15661033 3165408 3167491 CM091757.1 scf7180000184278 99.66 True fake: scaffold gap size wrong estimation (local) 15661637 15664318 3167734 3170484 CM091757.1 scf7180000184278 96.39 True fake: not a misassembly (possible transposable element) 15833051 15835099 3170522 3172602 CM091757.1 scf7180000184278 99.17 True fake: not a misassembly (possible transposable element) 15664796 15671191 3173386 3179829 CM091757.1 scf7180000184278 99.07 True fake: not a misassembly (possible transposable element) 16859295 16862480 3179894 3183167 CM091756.1 scf7180000184278 97.79 True fake: not a misassembly (possible transposable element) 15671821 15674163 3184161 3186504 CM091757.1 scf7180000184278 99.62 True fake: not a misassembly (possible transposable element) 9253340 9254757 3188350 3186934 CM091767.1 scf7180000184278 99.51 True fake: not a misassembly (possible transposable element) 15675626 15676397 3188381 3189151 CM091757.1 scf7180000184278 99.74 True translocation, scaffold gap is present 9251104 9251948 3190369 3189525 CM091767.1 scf7180000184278 99.29 True fake: scaffold gap size wrong estimation (local) 9250321 9251103 3191375 3190593 CM091767.1 scf7180000184278 99.49 True fake: scaffold gap size wrong estimation (local) 9248027 9250320 3195763 3193470 CM091767.1 scf7180000184278 98.56 True indel: indel (<= 5bp) 9247257 9248026 3196534 3195765 CM091767.1 scf7180000184278 99.74 True fake: scaffold gap size wrong estimation (local) 9246167 9247256 3197802 3196713 CM091767.1 scf7180000184278 99.91 True local misassembly 9244819 9246024 3199014 3197809 CM091767.1 scf7180000184278 98.26 True local misassembly 9243620 9244219 3200073 3199474 CM091767.1 scf7180000184278 99.83 True translocation, scaffold gap is present 15674059 15674677 3200596 3201198 CM091757.1 scf7180000184278 95.97 True translocation, scaffold gap is present 27203 27786 3201261 3201844 CM091753.1 scf7180000184278 99.69 True translocation 16863150 16864358 3201845 3203053 CM091756.1 scf7180000184278 100.0 True translocation, scaffold gap is present 9502658 9505188 3203157 3205635 CM091767.1 scf7180000184278 97.61 True fake: scaffold gap size wrong estimation (local) 9505260 9509928 3205994 3210661 CM091767.1 scf7180000184278 99.76 True translocation, scaffold gap is present 187056 193842 3210712 3217497 CM091753.1 scf7180000184278 99.93 True translocation, scaffold gap is present 6455799 6457636 3219857 3221723 CM091768.1 scf7180000184278 99.84 True fake: scaffold gap size wrong estimation (local) 6457813 6459671 3221876 3223687 CM091768.1 scf7180000184278 97.37 True translocation, scaffold gap is present 9509838 9510975 3223708 3224845 CM091767.1 scf7180000184278 100.0 True indel: indel (<= 5bp) 9510976 9512714 3224847 3226585 CM091767.1 scf7180000184278 98.91 True indel: indel (> 5bp) 9512715 9515231 3226609 3229125 CM091767.1 scf7180000184278 99.92 True fake: scaffold gap size wrong estimation (local) 9516022 9518277 3231095 3233350 CM091767.1 scf7180000184278 99.91 True fake: scaffold gap size wrong estimation (local) 9518600 9519489 3233699 3234588 CM091767.1 scf7180000184278 99.78 True fake: not a misassembly (possible transposable element) 6461331 6464096 3234639 3237427 CM091768.1 scf7180000184278 99.82 True fake: not a misassembly (possible transposable element) 9520569 9521951 3237488 3238899 CM091767.1 scf7180000184278 99.28 True translocation, scaffold gap is present 194004 196798 3238950 3241736 CM091753.1 scf7180000184278 99.68 True fake: not a misassembly (possible transposable element) 17511110 17512238 3243956 3242828 CM091751.1 scf7180000184278 100.0 True fake: not a misassembly (possible transposable element) 197905 199188 3244027 3245301 CM091753.1 scf7180000184278 98.97 True fake: not a misassembly (possible transposable element) 17504990 17510782 3251109 3245322 CM091751.1 scf7180000184278 99.74 True fake: not a misassembly (possible transposable element) 199256 203090 3251160 3254995 CM091753.1 scf7180000184278 99.79 True local misassembly 203729 204265 3255632 3256168 CM091753.1 scf7180000184278 96.83 True relocation, inconsistency = 3128918 3333460 3336413 3256445 3259398 CM091753.1 scf7180000184278 99.7 True translocation, scaffold gap is present 17481430 17503567 3281819 3259449 CM091751.1 scf7180000184278 98.99 True fake: scaffold gap size wrong estimation (local) 17467865 17479880 3294639 3282628 CM091751.1 scf7180000184278 99.91 True fake: scaffold gap size wrong estimation (local) 17454982 17467679 3307505 3294808 CM091751.1 scf7180000184278 99.98 True fake: scaffold gap size wrong estimation (local) 17440501 17454645 3321194 3307603 CM091751.1 scf7180000184278 96.05 True fake: scaffold gap size wrong estimation (local) 17437952 17438595 3322908 3322266 CM091751.1 scf7180000184278 99.53 True fake: scaffold gap size wrong estimation (local) 17434794 17437667 3326118 3323222 CM091751.1 scf7180000184278 99.86 True fake: scaffold gap size wrong estimation (local) 17432821 17434455 3328156 3326522 CM091751.1 scf7180000184278 100.0 True translocation, scaffold gap is present 15837169 15840651 3328207 3331948 CM091757.1 scf7180000184278 96.36 True fake: scaffold gap size wrong estimation (local) 15841447 15845701 3332695 3336950 CM091757.1 scf7180000184278 99.84 True translocation, scaffold gap is present 7591737 7593211 3338445 3336971 CM091767.1 scf7180000184278 99.66 True translocation, scaffold gap is present 3336715 3337479 3338669 3339433 CM091753.1 scf7180000184278 99.35 True fake: not a misassembly (possible transposable element) 15849142 15849778 3339454 3340090 CM091757.1 scf7180000184278 100.0 True fake: not a misassembly (possible transposable element) 3339748 3341652 3340141 3342039 CM091753.1 scf7180000184278 99.51 True translocation, scaffold gap is present 11199037 11201207 3344237 3342067 CM091765.1 scf7180000184278 99.91 True translocation, scaffold gap is present 16866387 16866886 3344761 3345260 CM091756.1 scf7180000184278 100.0 True translocation, scaffold gap is present 8562781 8563352 3345882 3345311 CM091767.1 scf7180000184278 100.0 True fake: not a misassembly (possible transposable element) 3341894 3342489 3345903 3346498 CM091753.1 scf7180000184278 99.85 True fake: not a misassembly (possible transposable element) 8560384 8561353 3347468 3346499 CM091767.1 scf7180000184278 100.0 True fake: not a misassembly (possible transposable element) 15846764 15848632 3347519 3349383 CM091757.1 scf7180000184278 98.61 True fake: not a misassembly (possible transposable element) 8561640 8562896 3350690 3349434 CM091767.1 scf7180000184278 100.0 True fake: not a misassembly (possible transposable element) 3326485 3328305 3350884 3352706 CM091753.1 scf7180000184278 99.27 True fake: not a misassembly (possible transposable element) 8557445 8560307 3355619 3352757 CM091767.1 scf7180000184278 99.93 True fake: not a misassembly (possible transposable element) 15849948 15850613 3355646 3356311 CM091757.1 scf7180000184278 100.0 True fake: not a misassembly (possible transposable element) 8555557 8556738 3358861 3357681 CM091767.1 scf7180000184278 99.83 True translocation, scaffold gap is present 15853150 15854930 3360964 3362743 CM091757.1 scf7180000184278 98.88 True fake: scaffold gap size wrong estimation (local) 15855157 15861828 3363399 3370068 CM091757.1 scf7180000184278 99.69 True translocation, scaffold gap is present 8549962 8553701 3373908 3370134 CM091767.1 scf7180000184278 99.57 True fake: not a misassembly (possible transposable element) 11196885 11198113 3375825 3374597 CM091765.1 scf7180000184278 99.59 True fake: not a misassembly (possible transposable element) 8547742 8548431 3376565 3375876 CM091767.1 scf7180000184278 100.0 True translocation, scaffold gap is present 11192796 11196168 3380768 3377394 CM091765.1 scf7180000184278 99.91 True translocation, scaffold gap is present 4609427 4617555 3389475 3381353 CM091768.1 scf7180000184278 99.79 True translocation, scaffold gap is present 11291970 11294576 3392178 3389572 CM091766.1 scf7180000184278 99.12 True translocation, scaffold gap is present 15811541 15814849 3393446 3396754 CM091757.1 scf7180000184278 99.49 True translocation 1211452 1212353 3397656 3396755 CM091764.1 scf7180000184278 95.15 True translocation, scaffold gap is present 11290356 11292124 3399475 3397707 CM091766.1 scf7180000184278 99.72 True fake: scaffold gap size wrong estimation (local) 11288813 11289460 3400987 3400340 CM091766.1 scf7180000184278 100.0 True fake: not a misassembly (possible transposable element) 4606073 4608220 3403271 3401124 CM091768.1 scf7180000184278 99.95 True fake: not a misassembly (possible transposable element) 11286473 11288403 3405645 3403722 CM091766.1 scf7180000184278 98.26 True fake: scaffold gap size wrong estimation (local) 11284262 11286047 3407677 3405872 CM091766.1 scf7180000184278 98.71 True fake: scaffold gap size wrong estimation (local) 11282863 11284057 3409571 3408377 CM091766.1 scf7180000184278 100.0 True fake: not a misassembly (possible transposable element) 16901518 16902032 3409665 3410179 CM091752.1 scf7180000184278 99.03 True fake: not a misassembly (possible transposable element) 11281887 11282614 3411104 3410378 CM091766.1 scf7180000184278 99.27 True translocation, scaffold gap is present 4236397 4237057 3411780 3412434 CM091754.1 scf7180000184278 95.17 True fake: not a misassembly (possible transposable element) 4602734 4603997 3414153 3412890 CM091768.1 scf7180000184278 99.05 True fake: not a misassembly (possible transposable element) 4239310 4244715 3414362 3419791 CM091754.1 scf7180000184278 99.93 True translocation, scaffold gap is present 11278766 11279305 3421573 3421034 CM091766.1 scf7180000184278 99.26 True fake: scaffold gap size wrong estimation (local) 11271368 11278073 3429039 3422415 CM091766.1 scf7180000184278 98.7 True fake: scaffold gap size wrong estimation (local) 11250556 11271254 3449624 3429124 CM091766.1 scf7180000184278 98.1 True fake: scaffold gap size wrong estimation (local) 11249305 11249864 3450204 3449660 CM091766.1 scf7180000184278 96.85 True translocation, scaffold gap is present 3188443 3189476 3451293 3450260 CM091752.1 scf7180000184278 99.9 True fake: scaffold gap size wrong estimation (local) 3182491 3188284 3457931 3452140 CM091752.1 scf7180000184278 99.72 True translocation, scaffold gap is present 11238529 11245630 3466312 3459210 CM091766.1 scf7180000184278 99.96 True fake: not a misassembly (possible transposable element) 16651522 16652591 3466374 3467448 CM091752.1 scf7180000184278 100.0 True fake: not a misassembly (possible transposable element) 11225296 11238330 3480642 3467622 CM091766.1 scf7180000184278 99.62 True fake: scaffold gap size wrong estimation (local) 11211155 11223572 3494545 3482297 CM091766.1 scf7180000184278 98.17 True fake: not a misassembly (possible transposable element) 179405 180430 3494910 3495935 CM091752.1 scf7180000184278 99.12 True fake: not a misassembly (possible transposable element) 11208256 11210124 3499050 3497180 CM091766.1 scf7180000184278 99.79 True fake: scaffold gap size wrong estimation (local) 11204099 11207070 3502767 3499796 CM091766.1 scf7180000184278 99.87 True fake: not a misassembly (possible transposable element) 1391034 1392263 3504275 3503046 CM091764.1 scf7180000184278 99.92 True fake: not a misassembly (possible transposable element) 11202147 11203122 3506700 3505731 CM091766.1 scf7180000184278 99.15 True fake: not a misassembly (possible transposable element) 11182718 11184275 3508258 3506701 CM091765.1 scf7180000184278 100.0 True fake: not a misassembly (possible transposable element) 11200443 11201010 3508943 3508376 CM091766.1 scf7180000184278 96.48 True translocation, scaffold gap is present 13408448 13422435 3523462 3509434 CM091758.1 scf7180000184278 99.81 True fake: scaffold gap size wrong estimation (local) 13400250 13408373 3531625 3523499 CM091758.1 scf7180000184278 99.64 True fake: not a misassembly (possible transposable element) 4670579 4671124 3531676 3532221 CM091754.1 scf7180000184278 100.0 True fake: not a misassembly (possible transposable element) 13397358 13398058 3533364 3532664 CM091758.1 scf7180000184278 100.0 True translocation, scaffold gap is present 11178510 11181277 3536182 3533415 CM091765.1 scf7180000184278 99.75 True fake: scaffold gap size wrong estimation (local) 11176891 11178425 3537965 3536431 CM091765.1 scf7180000184278 100.0 True fake: not a misassembly (possible transposable element) 13383563 13386193 3537986 3540617 CM091758.1 scf7180000184278 99.89 True fake: not a misassembly (possible transposable element) 11174592 11176437 3542788 3540925 CM091765.1 scf7180000184278 99.89 True translocation, scaffold gap is present 13386515 13394155 3542844 3550483 CM091758.1 scf7180000184278 99.93 True translocation, scaffold gap is present 184962 186481 3550931 3552429 CM091752.1 scf7180000184278 97.11 True fake: not a misassembly (possible transposable element) 11170565 11173051 3555295 3552864 CM091765.1 scf7180000184278 97.09 True fake: not a misassembly (possible transposable element) 187793 188498 3555376 3556081 CM091752.1 scf7180000184278 98.02 True indel: indel (> 5bp) 188522 189129 3556082 3556689 CM091752.1 scf7180000184278 99.51 True indel: indel (<= 5bp) 189130 189830 3556691 3557391 CM091752.1 scf7180000184278 99.71 True fake: scaffold gap size wrong estimation (local) 193827 195149 3560602 3561922 CM091752.1 scf7180000184278 98.09 True local misassembly 195620 199283 3562087 3565759 CM091752.1 scf7180000184278 98.16 True fake: scaffold gap size wrong estimation (local) 199474 200156 3565912 3566596 CM091752.1 scf7180000184278 99.12 True fake: not a misassembly (possible transposable element) 1387586 1390246 3569339 3566679 CM091764.1 scf7180000184278 100.0 True fake: not a misassembly (possible transposable element) 201500 205602 3570181 3574277 CM091752.1 scf7180000184278 98.83 True fake: scaffold gap size wrong estimation (local) 206456 207325 3574989 3575858 CM091752.1 scf7180000184278 99.77 True fake: scaffold gap size wrong estimation (local) 208115 212783 3576711 3581414 CM091752.1 scf7180000184278 98.53 True fake: scaffold gap size wrong estimation (local) 213121 214129 3581558 3582566 CM091752.1 scf7180000184278 99.7 True local misassembly 214977 215639 3582907 3583569 CM091752.1 scf7180000184278 96.08 True fake: not a misassembly (possible transposable element) 16652712 16653707 3584185 3585184 CM091752.1 scf7180000184278 99.2 True fake: not a misassembly (possible transposable element) 216392 216961 3585970 3586539 CM091752.1 scf7180000184278 98.77 True indel: indel (<= 5bp) 216963 218038 3586540 3587615 CM091752.1 scf7180000184278 99.35 True indel: indel (> 5bp) 218438 219009 3587999 3588570 CM091752.1 scf7180000184278 99.65 True local misassembly 219578 220127 3588923 3589472 CM091752.1 scf7180000184278 99.27 True indel: indel (<= 5bp) 220132 221383 3589482 3590733 CM091752.1 scf7180000184278 99.44 True fake: scaffold gap size wrong estimation (local) 221770 222322 3590979 3591531 CM091752.1 scf7180000184278 99.64 True fake: scaffold gap size wrong estimation (local) 223279 224144 3592080 3592945 CM091752.1 scf7180000184278 99.54 True indel: indel (<= 5bp) 224531 225108 3593331 3593908 CM091752.1 scf7180000184278 99.65 True fake: scaffold gap size wrong estimation (local) 225386 229268 3594059 3597972 CM091752.1 scf7180000184278 98.95 True indel: indel (<= 5bp) 229290 234538 3597996 3603243 CM091752.1 scf7180000184278 97.06 True fake: scaffold gap size wrong estimation (local) 234639 236941 3603340 3605660 CM091752.1 scf7180000184278 97.79 True fake: not a misassembly (possible transposable element) 9285117 9285951 3605805 3606639 CM091767.1 scf7180000184278 97.73 True fake: not a misassembly (possible transposable element) 237543 241227 3607249 3610913 CM091752.1 scf7180000184278 98.92 True indel: indel (> 5bp) 241371 248485 3610978 3618142 CM091752.1 scf7180000184278 98.14 True translocation, scaffold gap is present 8033035 8037722 3623643 3618994 CM091767.1 scf7180000184278 98.65 True translocation 89210 89731 3623644 3624165 CM091763.1 scf7180000184278 99.85 True fake: not a misassembly (possible transposable element) 4672158 4677293 3624216 3629439 CM091754.1 scf7180000184278 98.1 True fake: not a misassembly (possible transposable element) 92340 93361 3629490 3630511 CM091763.1 scf7180000184278 100.0 True translocation, scaffold gap is present 4601955 4602795 3631663 3630823 CM091768.1 scf7180000184278 100.0 True translocation, scaffold gap is present 8571465 8572573 3631714 3632822 CM091767.1 scf7180000184278 99.82 True local misassembly 8573833 8576385 3632823 3635375 CM091767.1 scf7180000184278 100.0 True fake: scaffold gap size wrong estimation (local) 8576386 8577604 3635387 3636605 CM091767.1 scf7180000184278 99.18 True indel: indel (<= 5bp) 8577605 8579351 3636607 3638353 CM091767.1 scf7180000184278 100.0 True fake: scaffold gap size wrong estimation (local) 8579892 8584323 3638581 3643012 CM091767.1 scf7180000184278 99.8 True fake: scaffold gap size wrong estimation (local) 8585018 8586027 3643906 3644915 CM091767.1 scf7180000184278 100.0 True fake: scaffold gap size wrong estimation (local) 8587701 8588308 3645461 3646068 CM091767.1 scf7180000184278 100.0 True fake: scaffold gap size wrong estimation (local) 8589784 8591558 3647730 3649519 CM091767.1 scf7180000184278 98.6 True translocation, scaffold gap is present 4678086 4684574 3649540 3656063 CM091754.1 scf7180000184278 99.83 True translocation, scaffold gap is present 15431161 15436114 3658476 3663429 CM091757.1 scf7180000184278 100.0 True relocation, scaffold gap is present, inconsistency = 573208 16009373 16010566 3664689 3663480 CM091757.1 scf7180000184278 99.66 True fake: scaffold gap size wrong estimation (local) 16003968 16004636 3665723 3665055 CM091757.1 scf7180000184278 100.0 True fake: not a misassembly (possible transposable element) 17302940 17304018 3667755 3668833 CM091752.1 scf7180000184278 98.89 True fake: not a misassembly (possible transposable element) 15999512 16001277 3670619 3668854 CM091757.1 scf7180000184278 99.94 True translocation, scaffold gap is present 270834 271415 3671842 3672423 CM091752.1 scf7180000184278 98.11 True indel: indel (<= 5bp) 271416 272145 3672425 3673154 CM091752.1 scf7180000184278 99.32 True translocation, scaffold gap is present 15998383 15998971 3673793 3673204 CM091757.1 scf7180000184278 97.63 True fake: scaffold gap size wrong estimation (local) 15996903 15998076 3675759 3674586 CM091757.1 scf7180000184278 99.83 True translocation, scaffold gap is present 274785 306324 3675833 3706626 CM091752.1 scf7180000184278 96.84 True fake: scaffold gap size wrong estimation (local) 306551 309579 3706831 3709858 CM091752.1 scf7180000184278 97.12 True fake: scaffold gap size wrong estimation (local) 309938 312067 3709932 3712061 CM091752.1 scf7180000184278 99.67 True fake: scaffold gap size wrong estimation (local) 312854 313817 3713033 3713996 CM091752.1 scf7180000184278 99.79 True local misassembly 315043 316992 3714543 3716492 CM091752.1 scf7180000184278 99.08 True indel: indel (<= 5bp) 316994 317751 3716493 3717250 CM091752.1 scf7180000184278 98.94 True indel: indel (<= 5bp) 317752 318456 3717252 3717956 CM091752.1 scf7180000184278 98.72 True fake: scaffold gap size wrong estimation (local) 318723 319232 3720763 3721272 CM091752.1 scf7180000184278 98.63 True indel: indel (<= 5bp) 319234 320106 3721273 3722145 CM091752.1 scf7180000184278 99.89 True fake: scaffold gap size wrong estimation (local) 320728 322308 3722852 3724430 CM091752.1 scf7180000184278 97.98 True relocation, scaffold gap is present, inconsistency = 16981629 17304052 17307130 3724545 3727630 CM091752.1 scf7180000184278 98.23 True translocation 15991753 15995687 3731576 3727631 CM091757.1 scf7180000184278 98.63 True translocation, scaffold gap is present 13152637 13155904 3735283 3732006 CM091752.1 scf7180000184278 97.99 True translocation, scaffold gap is present 2143827 2144573 3735548 3736294 CM091764.1 scf7180000184278 100.0 True translocation, scaffold gap is present 15990692 15991531 3737184 3736345 CM091757.1 scf7180000184278 99.88 True fake: scaffold gap size wrong estimation (local) 15990047 15990691 3737982 3737338 CM091757.1 scf7180000184278 100.0 True translocation, scaffold gap is present 645401 646146 3738006 3738751 CM091760.1 scf7180000184278 100.0 True translocation, scaffold gap is present 325419 327127 3739078 3740786 CM091752.1 scf7180000184278 99.47 True indel: indel (<= 5bp) 327132 327704 3740787 3741359 CM091752.1 scf7180000184278 99.13 True local misassembly 329442 330671 3741399 3742628 CM091752.1 scf7180000184278 99.59 True indel: indel (> 5bp) 330672 331286 3742642 3743256 CM091752.1 scf7180000184278 99.51 True local misassembly 332162 332666 3744109 3744613 CM091752.1 scf7180000184278 98.81 True indel: indel (<= 5bp) 332668 333216 3744614 3745162 CM091752.1 scf7180000184278 99.45 True indel: indel (> 5bp) 333630 334242 3745565 3746177 CM091752.1 scf7180000184278 99.35 True indel: indel (<= 5bp) 334243 335117 3746179 3747053 CM091752.1 scf7180000184278 99.31 True indel: indel (<= 5bp) 335118 335672 3747055 3747609 CM091752.1 scf7180000184278 99.46 True fake: scaffold gap size wrong estimation (local) 336705 339415 3749838 3752513 CM091752.1 scf7180000184278 97.83 True fake: not a misassembly (possible transposable element) 28072 29639 3752607 3754174 CM091760.1 scf7180000184278 100.0 True fake: not a misassembly (possible transposable element) 339954 352271 3754985 3767489 CM091752.1 scf7180000184278 97.28 True fake: scaffold gap size wrong estimation (local) 352328 355954 3767535 3771155 CM091752.1 scf7180000184278 98.9 True indel: indel (> 5bp) 356033 387219 3771221 3802311 CM091752.1 scf7180000184278 97.97 True fake: scaffold gap size wrong estimation (local) 387356 388795 3802919 3804360 CM091752.1 scf7180000184278 98.89 True translocation, scaffold gap is present 1757853 1758497 3804756 3805399 CM091764.1 scf7180000184278 99.07 True fake: not a misassembly (possible transposable element) 6187595 6188376 3805426 3806208 CM091768.1 scf7180000184278 99.87 True fake: not a misassembly (possible transposable element) 1758951 1760002 3806296 3807347 CM091764.1 scf7180000184278 99.9 True fake: not a misassembly (possible transposable element) 6189783 6190957 3807384 3808587 CM091768.1 scf7180000184278 98.56 True fake: not a misassembly (possible transposable element) 1762024 1764762 3810385 3813125 CM091764.1 scf7180000184278 99.82 True translocation, scaffold gap is present 6192412 6193975 3813216 3814805 CM091768.1 scf7180000184278 99.49 True translocation, scaffold gap is present 29820 31706 3814859 3816779 CM091760.1 scf7180000184278 99.0 True translocation, scaffold gap is present 1766667 1767341 3816837 3817511 CM091764.1 scf7180000184278 99.85 True fake: scaffold gap size wrong estimation (local) 1767437 1769427 3817845 3819835 CM091764.1 scf7180000184278 100.0 True fake: scaffold gap size wrong estimation (local) 1769840 1772377 3820663 3823202 CM091764.1 scf7180000184278 99.84 True fake: scaffold gap size wrong estimation (local) 1772699 1774186 3823611 3825098 CM091764.1 scf7180000184278 99.8 True fake: scaffold gap size wrong estimation (local) 1774331 1786561 3826153 3838311 CM091764.1 scf7180000184278 99.18 True fake: scaffold gap size wrong estimation (local) 1786462 1787314 3839153 3839982 CM091764.1 scf7180000184278 95.74 True relocation, scaffold gap is present, inconsistency = 359062 2146558 2147703 3840164 3841321 CM091764.1 scf7180000184278 98.42 True translocation, scaffold gap is present 15986094 15987075 3842874 3841893 CM091757.1 scf7180000184278 100.0 True translocation, scaffold gap is present 32183 33925 3842980 3844716 CM091760.1 scf7180000184278 98.91 True relocation, scaffold gap is present, inconsistency = 190549 224525 225149 3844767 3845391 CM091760.1 scf7180000184278 100.0 True fake: scaffold gap size wrong estimation (local) 225412 226539 3845679 3846805 CM091760.1 scf7180000184278 99.82 True fake: scaffold gap size wrong estimation (local) 226735 238371 3846959 3858575 CM091760.1 scf7180000184278 98.71 True fake: scaffold gap size wrong estimation (local) 239208 240791 3859197 3860795 CM091760.1 scf7180000184278 98.99 True fake: scaffold gap size wrong estimation (local) 240853 241383 3860960 3861490 CM091760.1 scf7180000184278 100.0 True fake: scaffold gap size wrong estimation (local) 241355 242957 3861963 3863565 CM091760.1 scf7180000184278 99.81 True translocation, scaffold gap is present 15977899 15984545 3870281 3863635 CM091757.1 scf7180000184278 99.98 True fake: scaffold gap size wrong estimation (local) 15975647 15977048 3873214 3871813 CM091757.1 scf7180000184278 99.79 True translocation, scaffold gap is present 17110921 17111710 3873318 3874106 CM091752.1 scf7180000184278 99.62 True translocation, scaffold gap is present 4689416 4689997 3875353 3874772 CM091768.1 scf7180000184278 100.0 True fake: scaffold gap size wrong estimation (local) 4688025 4689415 3876961 3875571 CM091768.1 scf7180000184278 100.0 True fake: scaffold gap size wrong estimation (local) 4685051 4688024 3881833 3878860 CM091768.1 scf7180000184278 100.0 True indel: indel (<= 5bp) 4683558 4685049 3883325 3881834 CM091768.1 scf7180000184278 99.8 True fake: scaffold gap size wrong estimation (local) 4680383 4683189 3886551 3883745 CM091768.1 scf7180000184278 99.86 True indel: indel (<= 5bp) 4678897 4680178 3888035 3886753 CM091768.1 scf7180000184278 99.92 True fake: scaffold gap size wrong estimation (local) 4676870 4678980 3890631 3888521 CM091768.1 scf7180000184278 99.81 True translocation, scaffold gap is present 243121 252863 3890682 3900424 CM091760.1 scf7180000184278 99.96 True fake: scaffold gap size wrong estimation (local) 253096 285271 3901032 3933161 CM091760.1 scf7180000184278 99.79 True indel: indel (<= 5bp) 285333 324655 3933227 3972497 CM091760.1 scf7180000184278 99.66 True fake: scaffold gap size wrong estimation (local) 324873 326124 3972628 3973879 CM091760.1 scf7180000184278 100.0 True fake: not a misassembly (possible transposable element) 4675427 4676132 3975096 3974391 CM091768.1 scf7180000184278 100.0 True fake: not a misassembly (possible transposable element) 326667 331969 3975147 3980517 CM091760.1 scf7180000184278 99.03 True fake: scaffold gap size wrong estimation (local) 332156 334496 3980644 3982985 CM091760.1 scf7180000184278 99.96 True fake: scaffold gap size wrong estimation (local) 335360 367622 3983717 4015946 CM091760.1 scf7180000184278 99.58 True relocation, scaffold gap is present, inconsistency = 6318445 6687340 6688821 4018700 4017219 CM091760.1 scf7180000184278 98.45 True indel: indel (<= 5bp) 6684439 6687338 4021600 4018701 CM091760.1 scf7180000184278 99.79 True local misassembly 6682389 6683647 4023511 4022253 CM091760.1 scf7180000184278 100.0 True fake: scaffold gap size wrong estimation (local) 6680128 6682503 4026418 4024032 CM091760.1 scf7180000184278 99.7 True fake: not a misassembly (possible transposable element) 7590141 7591381 4027709 4026469 CM091767.1 scf7180000184278 99.92 True fake: not a misassembly (possible transposable element) 6661915 6679784 4045647 4027758 CM091760.1 scf7180000184278 99.92 True fake: not a misassembly (possible transposable element) 5740211 5742181 4047668 4045698 CM091754.1 scf7180000184278 100.0 True fake: not a misassembly (possible transposable element) 6625199 6661475 4084263 4047957 CM091760.1 scf7180000184278 99.36 True fake: scaffold gap size wrong estimation (local) 6622721 6623537 4087216 4086400 CM091760.1 scf7180000184278 99.76 True indel: indel (<= 5bp) 6620282 6622720 4089656 4087218 CM091760.1 scf7180000184278 99.75 True indel: indel (<= 5bp) 6617947 6620279 4091989 4089657 CM091760.1 scf7180000184278 99.83 True indel: indel (<= 5bp) 6617153 6617945 4092782 4091990 CM091760.1 scf7180000184278 99.37 True local misassembly 6615771 6616463 4094150 4093458 CM091760.1 scf7180000184278 99.86 True local misassembly 6614349 6615175 4095577 4094751 CM091760.1 scf7180000184278 96.13 True local misassembly 6613184 6613778 4096748 4096154 CM091760.1 scf7180000184278 100.0 True indel: indel (> 5bp) 6612484 6613183 4097454 4096755 CM091760.1 scf7180000184278 99.57 True indel: indel (<= 5bp) 6611589 6612453 4098345 4097481 CM091760.1 scf7180000184278 99.65 True indel: indel (<= 5bp) 6609013 6611587 4100920 4098346 CM091760.1 scf7180000184278 99.61 True indel: indel (<= 5bp) 6607149 6609010 4102782 4100921 CM091760.1 scf7180000184278 99.73 True indel: indel (<= 5bp) 6605541 6607148 4104391 4102784 CM091760.1 scf7180000184278 99.69 True local misassembly 6602345 6604971 4107590 4104964 CM091760.1 scf7180000184278 99.62 True fake: scaffold gap size wrong estimation (local) 6600289 6600848 4112170 4111611 CM091760.1 scf7180000184278 100.0 True indel: indel (<= 5bp) 6598095 6600287 4114363 4112171 CM091760.1 scf7180000184278 99.64 True indel: indel (<= 5bp) 6596632 6597921 4115828 4114539 CM091760.1 scf7180000184278 99.84 True indel: indel (<= 5bp) 6596032 6596563 4116425 4115894 CM091760.1 scf7180000184278 98.87 True indel: indel (> 5bp) 6594913 6596025 4117538 4116426 CM091760.1 scf7180000184278 98.65 True indel: indel (> 5bp) 6593638 6594912 4118821 4117547 CM091760.1 scf7180000184278 99.76 True indel: indel (<= 5bp) 6591679 6593636 4120779 4118822 CM091760.1 scf7180000184278 99.85 True indel: indel (<= 5bp) 6590617 6591678 4121842 4120781 CM091760.1 scf7180000184278 99.72 True indel: indel (<= 5bp) 6587075 6590615 4125383 4121843 CM091760.1 scf7180000184278 99.97 True fake: not a misassembly (possible transposable element) 7958693 7959260 4126001 4125434 CM091767.1 scf7180000184278 100.0 True fake: not a misassembly (possible transposable element) 6511168 6586936 4201868 4126052 CM091760.1 scf7180000184278 99.06 True fake: not a misassembly (possible transposable element) 37754 40163 4202095 4204508 CM091760.1 scf7180000184278 99.21 True fake: not a misassembly (possible transposable element) 6419931 6511000 4295652 4204543 CM091760.1 scf7180000184278 98.93 True fake: scaffold gap size wrong estimation (local) 6416807 6419719 4298586 4295673 CM091760.1 scf7180000184278 99.52 True fake: not a misassembly (possible transposable element) 7949898 7952208 4301300 4298990 CM091767.1 scf7180000184278 99.96 True fake: not a misassembly (possible transposable element) 6415722 6416633 4302262 4301351 CM091760.1 scf7180000184278 97.81 True local misassembly 6413161 6415439 4304585 4302307 CM091760.1 scf7180000184278 99.91 True fake: not a misassembly (possible transposable element) 40140 43470 4305537 4308864 CM091760.1 scf7180000184278 99.85 True fake: not a misassembly (possible transposable element) 6405725 6408407 4311618 4308926 CM091760.1 scf7180000184278 99.4 True fake: scaffold gap size wrong estimation (local) 6403610 6404710 4313497 4312397 CM091760.1 scf7180000184278 99.82 True fake: scaffold gap size wrong estimation (local) 6400764 6402927 4316254 4314091 CM091760.1 scf7180000184278 99.91 True fake: scaffold gap size wrong estimation (local) 6399429 6400070 4317688 4317047 CM091760.1 scf7180000184278 99.84 True translocation, scaffold gap is present 1876814 1878391 4321510 4319936 CM091764.1 scf7180000184278 99.43 True translocation, scaffold gap is present 7945081 7948947 4325400 4321534 CM091767.1 scf7180000184278 99.48 True fake: scaffold gap size wrong estimation (local) 7944186 7945080 4329187 4328293 CM091767.1 scf7180000184278 99.44 True fake: scaffold gap size wrong estimation (local) 7941739 7942939 4331499 4330299 CM091767.1 scf7180000184278 99.83 True fake: scaffold gap size wrong estimation (local) 7939995 7941297 4333029 4331727 CM091767.1 scf7180000184278 99.77 True fake: scaffold gap size wrong estimation (local) 7937592 7938105 4335045 4334532 CM091767.1 scf7180000184278 99.03 True translocation, scaffold gap is present 5368925 5369831 4337158 4336246 CM091751.1 scf7180000184278 98.54 True translocation, scaffold gap is present 17205158 17206021 4339149 4340012 CM091752.1 scf7180000184278 99.31 True fake: scaffold gap size wrong estimation (local) 17207092 17208582 4341004 4342478 CM091752.1 scf7180000184278 98.1 True translocation, scaffold gap is present 5741591 5746031 4356853 4352397 CM091768.1 scf7180000184278 99.95 True fake: scaffold gap size wrong estimation (local) 5738646 5740447 4359529 4357710 CM091768.1 scf7180000184278 100.0 True fake: scaffold gap size wrong estimation (local) 5737190 5737970 4360421 4359641 CM091768.1 scf7180000184278 100.0 True local misassembly 5738232 5738747 4361088 4360573 CM091768.1 scf7180000184278 99.81 True fake: scaffold gap size wrong estimation (local) 5731698 5736292 4367102 4362527 CM091768.1 scf7180000184278 99.46 True translocation, scaffold gap is present 8967016 8969510 4368009 4370569 CM091767.1 scf7180000184278 97.87 True fake: scaffold gap size wrong estimation (local) 8970773 8971445 4371375 4372047 CM091767.1 scf7180000184278 96.73 True fake: scaffold gap size wrong estimation (local) 8971446 8973121 4372066 4373741 CM091767.1 scf7180000184278 99.88 True indel: indel (<= 5bp) 8973122 8974019 4373743 4374640 CM091767.1 scf7180000184278 99.89 True fake: scaffold gap size wrong estimation (local) 8973971 8975282 4375119 4376430 CM091767.1 scf7180000184278 99.92 True fake: scaffold gap size wrong estimation (local) 8975784 8976888 4376769 4377873 CM091767.1 scf7180000184278 99.64 True relocation, scaffold gap is present, inconsistency = 12389 8989298 8992106 4377894 4380701 CM091767.1 scf7180000184278 99.89 True fake: scaffold gap size wrong estimation (local) 8994486 8996607 4380926 4383047 CM091767.1 scf7180000184278 99.34 True relocation, scaffold gap is present, inconsistency = -15505 8981153 8981805 4383098 4383750 CM091767.1 scf7180000184278 100.0 True fake: scaffold gap size wrong estimation (local) 8982151 8983608 4384567 4386024 CM091767.1 scf7180000184278 100.0 True translocation, scaffold gap is present 4571571 4572460 4386075 4386964 CM091768.1 scf7180000184278 99.89 True fake: scaffold gap size wrong estimation (local) 4575105 4575997 4388217 4389109 CM091768.1 scf7180000184278 99.89 True fake: scaffold gap size wrong estimation (local) 4576686 4579068 4390146 4392529 CM091768.1 scf7180000184278 99.96 True relocation, scaffold gap is present, inconsistency = -725973 3853764 3858326 4393198 4397723 CM091768.1 scf7180000184278 98.96 True fake: scaffold gap size wrong estimation (local) 3858602 3859847 4397795 4399025 CM091768.1 scf7180000184278 98.27 True fake: scaffold gap size wrong estimation (local) 3860139 3863197 4399215 4402331 CM091768.1 scf7180000184278 97.95 True fake: scaffold gap size wrong estimation (local) 3864222 3869508 4402593 4407912 CM091768.1 scf7180000184278 99.6 True translocation, scaffold gap is present 13452132 13452935 4408772 4407970 CM091758.1 scf7180000184278 99.25 True fake: scaffold gap size wrong estimation (local) 13448379 13449310 4411986 4411055 CM091758.1 scf7180000184278 99.03 True fake: scaffold gap size wrong estimation (local) 13445424 13447563 4414878 4412739 CM091758.1 scf7180000184278 99.91 True fake: scaffold gap size wrong estimation (local) 13444142 13444767 4415763 4415137 CM091758.1 scf7180000184278 99.52 True fake: scaffold gap size wrong estimation (local) 13441175 13443433 4418141 4415887 CM091758.1 scf7180000184278 95.77 True fake: scaffold gap size wrong estimation (local) 13439492 13440983 4419842 4418345 CM091758.1 scf7180000184278 99.2 True fake: scaffold gap size wrong estimation (local) 13435932 13439748 4424952 4421135 CM091758.1 scf7180000184278 99.69 True CONTIG scf7180000184278 4424952 misassembled CONTIG scf7180000184279 418 unaligned CONTIG scf7180000184280 309 unaligned 14917088 14918618 1 1499 CM091751.1 scf7180000184282 96.5 True CONTIG scf7180000184282 1596 correct 15865844 15867471 1640 13 CM091758.1 scf7180000184283 100.0 True CONTIG scf7180000184283 1653 correct