S1 E1 S2 E2 Reference Contig IDY Ambiguous Best_group CONTIG scf7180002753211 214 unaligned CONTIG scf7180002753213 202 unaligned CONTIG scf7180002753219 200 unaligned CONTIG scf7180002753227 208 unaligned CONTIG scf7180002753243 208 unaligned 12936017 12945993 9968 1 CM091753.1 scf7180002753276 99.36 True CONTIG scf7180002753276 9984 correct 17151372 17151887 523 10 CM091752.1 scf7180002753381 98.06 True CONTIG scf7180002753381 523 correct 1761551 1767758 6233 1 CM091768.1 scf7180002753403 98.54 True CONTIG scf7180002753403 6462 correct CONTIG scf7180002753405 60083 unaligned CONTIG scf7180002753408 200 unaligned 11126552 11128132 245 1825 CM091765.1 scf7180002753417 99.81 True fake: scaffold gap size wrong estimation (local) 11128323 11129078 2341 3096 CM091765.1 scf7180002753417 100.0 True indel: indel (> 5bp) 11129523 11130294 3533 4304 CM091765.1 scf7180002753417 99.87 True indel: indel (> 5bp) 11130326 11131227 4305 5206 CM091765.1 scf7180002753417 100.0 True fake: scaffold gap size wrong estimation (local) 11131678 11133191 5254 6767 CM091765.1 scf7180002753417 99.93 True CONTIG scf7180002753417 6767 correct CONTIG scf7180002753426 204 unaligned CONTIG scf7180002753430 87621 unaligned 13924635 13932096 7468 1 CM091760.1 scf7180002753441 99.17 True CONTIG scf7180002753441 7475 correct CONTIG scf7180002753462 201 unaligned 9846807 9858392 11590 1 CM091765.1 scf7180002753476 99.92 True CONTIG scf7180002753476 11590 correct 11104224 11114044 1 9827 CM091751.1 scf7180002753478 99.54 True CONTIG scf7180002753478 9827 correct CONTIG scf7180002753482 203 unaligned CONTIG scf7180002753493 217 unaligned 1454563 1460431 5910 1 CM091764.1 scf7180002753494 99.61 True CONTIG scf7180002753494 5910 correct CONTIG scf7180002753520 103418 unaligned 1544311 1545915 1 1616 CM091764.1 scf7180002753525 99.75 True fake: scaffold gap size wrong estimation (local) 1548009 1549965 2901 4849 CM091764.1 scf7180002753525 99.45 True translocation 14008686 14010697 6860 4850 CM091752.1 scf7180002753525 98.76 True CONTIG scf7180002753525 6860 misassembled 9573575 9574095 521 1 CM091762.1 scf7180002753535 97.89 True CONTIG scf7180002753535 708 correct CONTIG scf7180002753536 218 unaligned 3379516 3380092 261 837 CM091768.1 scf7180002753549 99.79 True relocation, inconsistency = 8656 3388749 3389957 838 2046 CM091768.1 scf7180002753549 98.3 True CONTIG scf7180002753549 2050 misassembled CONTIG scf7180002753564 210 unaligned 5339549 5341526 1978 1 CM091754.1 scf7180002753566 100.0 True CONTIG scf7180002753566 1978 correct 1511339 1540610 1 29288 CM091759.1 scf7180002753579 99.56 True CONTIG scf7180002753579 29288 correct 9692145 9709681 17549 1 CM091758.1 scf7180002753595 99.33 True relocation, inconsistency = 56466 9621455 9635678 31764 17550 CM091758.1 scf7180002753595 98.9 True CONTIG scf7180002753595 31764 misassembled 167827 173419 289 5893 CM091764.1 scf7180002753611 99.95 True CONTIG scf7180002753611 5893 correct 6845932 6847822 1 1895 CM091763.1 scf7180002753612 99.31 True local misassembly 6848144 6891940 2128 46013 CM091763.1 scf7180002753612 99.73 True indel: indel (> 5bp) 6892085 6894214 46170 48300 CM091763.1 scf7180002753612 99.91 True fake: scaffold gap size wrong estimation (local) 6894223 6906960 52621 65355 CM091763.1 scf7180002753612 99.79 True fake: scaffold gap size wrong estimation (extensive) 6906987 6926833 74118 94019 CM091763.1 scf7180002753612 99.58 True local misassembly 6927866 6929257 95003 96399 CM091763.1 scf7180002753612 99.28 True fake: scaffold gap size wrong estimation (local) 6929720 6932852 96552 99684 CM091763.1 scf7180002753612 99.78 True indel: stretch of mismatches 6932880 6934281 99712 101113 CM091763.1 scf7180002753612 99.93 True indel: indel (<= 5bp) 6934282 6935687 101115 102520 CM091763.1 scf7180002753612 99.86 True fake: scaffold gap size wrong estimation (local) 6938013 6940164 104108 106259 CM091763.1 scf7180002753612 99.67 True indel: indel (> 5bp) 6940530 6941248 106635 107353 CM091763.1 scf7180002753612 99.86 True indel: indel (> 5bp) 6941426 6943297 107537 109408 CM091763.1 scf7180002753612 99.84 True fake: scaffold gap size wrong estimation (local) 6943645 6944420 111137 111912 CM091763.1 scf7180002753612 99.48 True indel: indel (> 5bp) 6944432 6947174 111913 114655 CM091763.1 scf7180002753612 99.67 True indel: indel (<= 5bp) 6947177 6947964 114656 115443 CM091763.1 scf7180002753612 99.62 True indel: indel (<= 5bp) 6948029 6949010 115503 116484 CM091763.1 scf7180002753612 99.39 True fake: scaffold gap size wrong estimation (local) 6949286 6951690 116751 119155 CM091763.1 scf7180002753612 96.92 True fake: scaffold gap size wrong estimation (local) 6952522 6953417 119994 120889 CM091763.1 scf7180002753612 99.67 True fake: scaffold gap size wrong estimation (local) 6953418 6955647 120915 123144 CM091763.1 scf7180002753612 98.65 True fake: scaffold gap size wrong estimation (local) 6955648 6956973 123166 124491 CM091763.1 scf7180002753612 100.0 True indel: indel (<= 5bp) 6956974 6958011 124494 125531 CM091763.1 scf7180002753612 100.0 True indel: indel (> 5bp) 6958022 6959925 125532 127435 CM091763.1 scf7180002753612 99.63 True local misassembly 6960699 6961332 127867 128500 CM091763.1 scf7180002753612 96.85 True fake: scaffold gap size wrong estimation (local) 6962078 7016335 129936 184181 CM091763.1 scf7180002753612 99.21 True fake: scaffold gap size wrong estimation (local) 7016657 7032562 184202 200151 CM091763.1 scf7180002753612 98.86 True fake: scaffold gap size wrong estimation (local) 7032573 7037921 205168 210519 CM091763.1 scf7180002753612 99.63 True fake: scaffold gap size wrong estimation (local) 7037907 7042684 215771 220564 CM091763.1 scf7180002753612 99.35 True fake: scaffold gap size wrong estimation (local) 7042807 7137266 220676 315315 CM091763.1 scf7180002753612 99.28 True CONTIG scf7180002753612 315754 correct CONTIG scf7180002753631 346 unaligned 3257351 3258827 516 1992 CM091752.1 scf7180002753656 99.86 True indel: indel (<= 5bp) 3258831 3262558 1993 5720 CM091752.1 scf7180002753656 99.95 True fake: scaffold gap size wrong estimation (local) 3263219 3265355 5979 8115 CM091752.1 scf7180002753656 99.06 True CONTIG scf7180002753656 8115 correct 965045 979319 1 13702 CM091755.1 scf7180002753662 95.9 True fake: scaffold gap size wrong estimation (extensive) 979476 984756 21462 26741 CM091755.1 scf7180002753662 99.96 True fake: scaffold gap size wrong estimation (local) 984787 1038066 31497 84729 CM091755.1 scf7180002753662 99.86 True CONTIG scf7180002753662 84729 correct 15447602 15449516 83 1997 CM091752.1 scf7180002753688 99.84 True CONTIG scf7180002753688 1997 correct CONTIG scf7180002753692 140276 unaligned 949982 955890 5817 1 CM091764.1 scf7180002753697 98.37 True fake: scaffold gap size wrong estimation (local) 946009 949999 9828 5838 CM091764.1 scf7180002753697 99.75 True CONTIG scf7180002753697 9828 correct 5665891 5667809 1920 1 CM091768.1 scf7180002753701 99.53 True CONTIG scf7180002753701 1920 correct 13871382 13874676 3294 1 CM091754.1 scf7180002753702 99.18 True fake: scaffold gap size wrong estimation (local) 13853402 13870937 20807 3433 CM091754.1 scf7180002753702 98.19 True CONTIG scf7180002753702 20807 correct 15631039 15632228 1 1191 CM091757.1 scf7180002753712 99.92 True CONTIG scf7180002753712 1191 correct 5023833 5028388 4559 1 CM091754.1 scf7180002753716 99.89 True CONTIG scf7180002753716 4559 correct CONTIG scf7180002753739 201 unaligned 1741980 1745425 1 3446 CM091764.1 scf7180002753740 99.59 True CONTIG scf7180002753740 3446 correct CONTIG scf7180002753755 211 unaligned 903092 903644 30 582 CM091764.1 scf7180002753756 99.64 True CONTIG scf7180002753756 582 correct 9863896 9868226 1 4340 CM091765.1 scf7180002753758 99.93 True fake: scaffold gap size wrong estimation (local) 9869977 9875063 5520 10606 CM091765.1 scf7180002753758 99.82 True CONTIG scf7180002753758 10606 correct 1690087 1703147 13089 1 CM091755.1 scf7180002753762 99.66 True fake: scaffold gap size wrong estimation (local) 1643609 1690082 66145 19624 CM091755.1 scf7180002753762 99.69 True fake: scaffold gap size wrong estimation (local) 1590343 1643384 118899 66338 CM091755.1 scf7180002753762 98.8 True fake: scaffold gap size wrong estimation (extensive) 1490846 1590463 227507 127862 CM091755.1 scf7180002753762 99.91 True CONTIG scf7180002753762 227699 correct 8199348 8221869 1 22038 CM091759.1 scf7180002753771 97.12 True fake: scaffold gap size wrong estimation (local) 8221888 8270372 24763 73273 CM091759.1 scf7180002753771 99.36 True fake: scaffold gap size wrong estimation (local) 8270483 8350868 73384 153677 CM091759.1 scf7180002753771 99.46 True CONTIG scf7180002753771 153678 correct 5222047 5230345 8129 1 CM091768.1 scf7180002753776 97.62 True fake: scaffold gap size wrong estimation (local) 5217472 5221445 12561 8588 CM091768.1 scf7180002753776 100.0 True translocation, scaffold gap is present 8776826 8778489 14553 12897 CM091767.1 scf7180002753776 99.4 True fake: scaffold gap size wrong estimation (local) 8772085 8776890 21164 16359 CM091767.1 scf7180002753776 99.94 True CONTIG scf7180002753776 21164 misassembled 11008090 11011095 3006 1 CM091765.1 scf7180002753780 99.93 True CONTIG scf7180002753780 3020 correct 9319252 9322058 2808 1 CM091767.1 scf7180002753789 99.93 True CONTIG scf7180002753789 2808 correct 10221666 10223795 1 2132 CM091765.1 scf7180002753791 98.88 True CONTIG scf7180002753791 2132 correct 10343008 10344585 1579 1 CM091765.1 scf7180002753796 99.87 True CONTIG scf7180002753796 1579 correct 7777532 7784292 1 6761 CM091767.1 scf7180002753800 99.97 True CONTIG scf7180002753800 6761 correct 1812205 1813265 1 1061 CM091752.1 scf7180002753801 98.3 True local misassembly 1814162 1815519 1431 2788 CM091752.1 scf7180002753801 99.56 True fake: scaffold gap size wrong estimation (local) 1815669 1816589 2924 3844 CM091752.1 scf7180002753801 99.57 True fake: scaffold gap size wrong estimation (local) 1817225 1818094 4108 4977 CM091752.1 scf7180002753801 98.62 True indel: stretch of mismatches 1818199 1819498 5082 6381 CM091752.1 scf7180002753801 99.38 True fake: scaffold gap size wrong estimation (local) 1820290 1821753 6563 8026 CM091752.1 scf7180002753801 99.52 True indel: indel (<= 5bp) 1821754 1822762 8030 9038 CM091752.1 scf7180002753801 96.23 True indel: indel (> 5bp) 1822772 1823686 9039 9953 CM091752.1 scf7180002753801 95.52 True indel: indel (> 5bp) 1824171 1826104 10425 12358 CM091752.1 scf7180002753801 98.09 True CONTIG scf7180002753801 12358 correct 15586892 15590895 4149 145 CM091759.1 scf7180002753803 99.73 True fake: scaffold gap size wrong estimation (local) 15550486 15586672 40979 4802 CM091759.1 scf7180002753803 99.82 True relocation, scaffold gap is present, inconsistency = -35399 15517706 15550437 109183 76427 CM091759.1 scf7180002753803 99.77 True CONTIG scf7180002753803 109184 misassembled 8769885 8770708 824 1 CM091767.1 scf7180002753805 99.29 True local misassembly 8758919 8766493 8330 825 CM091767.1 scf7180002753805 98.35 True CONTIG scf7180002753805 8330 correct 8824653 8832848 1 8197 CM091767.1 scf7180002753807 99.95 True CONTIG scf7180002753807 8216 correct 4485741 4488604 2864 1 CM091768.1 scf7180002753808 100.0 True CONTIG scf7180002753808 2864 correct CONTIG scf7180002753810 234 unaligned 6654381 6655430 1053 1 CM091767.1 scf7180002753813 96.98 True indel: indel (> 5bp) 6653486 6654383 1955 1058 CM091767.1 scf7180002753813 99.89 True indel: indel (> 5bp) 6652515 6653485 2934 1964 CM091767.1 scf7180002753813 99.49 True local misassembly 6650466 6651160 4383 3689 CM091767.1 scf7180002753813 98.27 True indel: indel (> 5bp) 6647855 6650465 7000 4390 CM091767.1 scf7180002753813 99.2 True indel: indel (<= 5bp) 6646154 6647854 8702 7002 CM091767.1 scf7180002753813 99.12 True local misassembly 6644670 6645391 10188 9467 CM091767.1 scf7180002753813 97.92 True CONTIG scf7180002753813 10189 correct 14733967 14735635 1 1669 CM091754.1 scf7180002753814 100.0 True indel: indel (<= 5bp) 14735801 14736916 1839 2954 CM091754.1 scf7180002753814 99.82 True fake: scaffold gap size wrong estimation (local) 14737602 14739304 3227 4929 CM091754.1 scf7180002753814 98.77 True indel: indel (<= 5bp) 14739307 14740406 4930 6029 CM091754.1 scf7180002753814 98.36 True indel: indel (> 5bp) 14740407 14741555 6041 7189 CM091754.1 scf7180002753814 99.91 True CONTIG scf7180002753814 7400 correct 6198950 6200951 3358 1359 CM091768.1 scf7180002753816 99.9 True CONTIG scf7180002753816 3358 correct CONTIG scf7180002753817 1243 unaligned CONTIG scf7180002753820 357 unaligned 17364464 17366732 2237 11 CM091753.1 scf7180002753821 97.44 True CONTIG scf7180002753821 2237 correct 197785 199557 1795 1 CM091753.1 scf7180002753822 99.94 True fake: scaffold gap size wrong estimation (local) 186605 196227 12511 2966 CM091753.1 scf7180002753822 99.18 True CONTIG scf7180002753822 12689 correct 1808178 1809109 932 1 CM091768.1 scf7180002753824 99.79 True fake: scaffold gap size wrong estimation (local) 1804389 1805039 3579 2929 CM091768.1 scf7180002753824 99.85 True indel: indel (<= 5bp) 1803668 1804388 4301 3581 CM091768.1 scf7180002753824 99.86 True indel: indel (<= 5bp) 1802976 1803665 4991 4302 CM091768.1 scf7180002753824 100.0 True indel: indel (<= 5bp) 1801937 1802973 6028 4992 CM091768.1 scf7180002753824 99.52 True fake: scaffold gap size wrong estimation (local) 1799129 1799946 8119 7302 CM091768.1 scf7180002753824 99.63 True fake: scaffold gap size wrong estimation (local) 1796616 1798651 10641 8606 CM091768.1 scf7180002753824 99.61 True CONTIG scf7180002753824 10977 correct 15039405 15041424 7 2028 CM091751.1 scf7180002753826 99.56 True CONTIG scf7180002753826 2028 correct 8275215 8278271 3094 1 CM091767.1 scf7180002753827 99.38 True fake: scaffold gap size wrong estimation (local) 8268222 8275091 10031 3203 CM091767.1 scf7180002753827 98.92 True fake: scaffold gap size wrong estimation (local) 8264219 8267502 13960 10677 CM091767.1 scf7180002753827 99.97 True indel: indel (<= 5bp) 8260271 8264218 17909 13962 CM091767.1 scf7180002753827 99.85 True indel: indel (<= 5bp) 8259434 8260270 18747 17911 CM091767.1 scf7180002753827 99.76 True CONTIG scf7180002753827 19731 correct 11042978 11044407 1 1430 CM091765.1 scf7180002753829 99.93 True indel: indel (> 5bp) 11044566 11047837 1612 5944 CM091765.1 scf7180002753829 99.94 True CONTIG scf7180002753829 6327 correct CONTIG scf7180002753830 201 unaligned 6400456 6408781 447 8561 CM091760.1 scf7180002753832 96.76 True relocation, inconsistency = 4003674 2395874 2396781 9469 8562 CM091760.1 scf7180002753832 100.0 True CONTIG scf7180002753832 9469 misassembled CONTIG scf7180002753834 303 unaligned 5399536 5401487 1953 1 CM091758.1 scf7180002753835 99.64 True CONTIG scf7180002753835 1953 correct 15026197 15035571 9363 1 CM091751.1 scf7180002753836 99.01 True CONTIG scf7180002753836 9363 correct 14743697 14747587 38 3920 CM091754.1 scf7180002753837 99.27 True CONTIG scf7180002753837 3920 correct 14927672 14932764 1 5054 CM091754.1 scf7180002753839 96.88 True CONTIG scf7180002753839 5300 correct 11343028 11344696 1 1668 CM091761.1 scf7180002753840 99.82 True CONTIG scf7180002753840 1668 correct 11456287 11464194 7936 1 CM091763.1 scf7180002753841 99.25 True CONTIG scf7180002753841 7936 correct 11348312 11349752 1 1440 CM091761.1 scf7180002753842 99.72 True fake: scaffold gap size wrong estimation (local) 11350248 11357930 1655 9383 CM091761.1 scf7180002753842 98.85 True fake: scaffold gap size wrong estimation (local) 11358317 11360286 10398 12390 CM091761.1 scf7180002753842 99.04 True fake: scaffold gap size wrong estimation (local) 11360837 11368947 12869 20975 CM091761.1 scf7180002753842 99.29 True fake: scaffold gap size wrong estimation (local) 11370442 11371128 22257 22943 CM091761.1 scf7180002753842 99.85 True fake: scaffold gap size wrong estimation (local) 11371964 11373193 23773 25002 CM091761.1 scf7180002753842 99.67 True local misassembly 11373194 11373830 25447 26083 CM091761.1 scf7180002753842 99.53 True fake: scaffold gap size wrong estimation (local) 11374530 11377518 26572 29560 CM091761.1 scf7180002753842 99.97 True indel: indel (<= 5bp) 11377519 11378218 29566 30265 CM091761.1 scf7180002753842 99.71 True CONTIG scf7180002753842 32025 correct 7078123 7116360 38083 1 CM091761.1 scf7180002753844 98.57 True fake: scaffold gap size wrong estimation (local) 7041474 7078143 77405 40614 CM091761.1 scf7180002753844 99.47 True fake: scaffold gap size wrong estimation (local) 6929512 7041337 189389 77505 CM091761.1 scf7180002753844 99.81 True CONTIG scf7180002753844 189389 correct 5416761 5419678 1 2911 CM091758.1 scf7180002753845 98.77 True fake: scaffold gap size wrong estimation (local) 5420118 5420809 3334 4025 CM091758.1 scf7180002753845 99.71 True indel: indel (<= 5bp) 5420811 5421412 4026 4627 CM091758.1 scf7180002753845 99.5 True fake: scaffold gap size wrong estimation (local) 5421413 5421934 4664 5185 CM091758.1 scf7180002753845 99.81 True local misassembly 5422252 5423392 5186 6326 CM091758.1 scf7180002753845 97.98 True fake: scaffold gap size wrong estimation (local) 5423958 5424718 6942 7702 CM091758.1 scf7180002753845 99.87 True indel: indel (<= 5bp) 5424721 5425265 7703 8247 CM091758.1 scf7180002753845 95.23 True fake: scaffold gap size wrong estimation (local) 5427555 5435757 10079 18270 CM091758.1 scf7180002753845 99.35 True CONTIG scf7180002753845 19779 correct 11493501 11495020 1520 1 CM091763.1 scf7180002753846 100.0 True CONTIG scf7180002753846 1520 correct 14844040 14850474 1 6474 CM091754.1 scf7180002753847 99.14 True fake: scaffold gap size wrong estimation (local) 14850837 14858391 6841 14432 CM091754.1 scf7180002753847 99.68 True fake: scaffold gap size wrong estimation (local) 14858848 14865291 14908 21383 CM091754.1 scf7180002753847 99.75 True fake: scaffold gap size wrong estimation (local) 14865489 14866410 21570 22509 CM091754.1 scf7180002753847 96.87 True fake: scaffold gap size wrong estimation (local) 14866679 14868375 22852 24548 CM091754.1 scf7180002753847 100.0 True fake: scaffold gap size wrong estimation (local) 14869705 14870259 25571 26125 CM091754.1 scf7180002753847 100.0 True fake: scaffold gap size wrong estimation (local) 14870260 14870830 26154 26724 CM091754.1 scf7180002753847 99.82 True fake: scaffold gap size wrong estimation (local) 14871504 14872498 27423 28417 CM091754.1 scf7180002753847 96.08 True fake: scaffold gap size wrong estimation (local) 14873070 14874603 28827 30360 CM091754.1 scf7180002753847 98.83 True fake: scaffold gap size wrong estimation (local) 14875023 14875809 30426 31212 CM091754.1 scf7180002753847 100.0 True fake: scaffold gap size wrong estimation (local) 14876414 14878005 32196 33787 CM091754.1 scf7180002753847 98.62 True local misassembly 14878155 14879014 33788 34647 CM091754.1 scf7180002753847 97.33 True fake: scaffold gap size wrong estimation (local) 14879684 14881388 35378 37082 CM091754.1 scf7180002753847 99.53 True fake: scaffold gap size wrong estimation (local) 14881630 14886459 37250 42128 CM091754.1 scf7180002753847 98.32 True fake: scaffold gap size wrong estimation (local) 14886704 14888053 42376 43725 CM091754.1 scf7180002753847 99.26 True local misassembly 14888399 14889123 43726 44450 CM091754.1 scf7180002753847 97.24 True fake: scaffold gap size wrong estimation (local) 14889657 14894121 44984 49437 CM091754.1 scf7180002753847 98.93 True fake: scaffold gap size wrong estimation (local) 14894291 14897666 49574 53022 CM091754.1 scf7180002753847 99.12 True fake: scaffold gap size wrong estimation (local) 14897817 14900241 53149 55571 CM091754.1 scf7180002753847 99.88 True fake: scaffold gap size wrong estimation (local) 14902047 14904931 56613 59501 CM091754.1 scf7180002753847 99.89 True fake: scaffold gap size wrong estimation (local) 14905113 14906060 59700 60647 CM091754.1 scf7180002753847 100.0 True fake: scaffold gap size wrong estimation (local) 14907843 14913470 60846 66445 CM091754.1 scf7180002753847 98.57 True fake: scaffold gap size wrong estimation (local) 14914837 14918191 67460 70784 CM091754.1 scf7180002753847 99.01 True CONTIG scf7180002753847 70784 correct 15331332 15332711 1391 1 CM091754.1 scf7180002753848 99.07 True CONTIG scf7180002753848 1391 correct 9103539 9104066 1 528 CM091767.1 scf7180002753850 99.81 True CONTIG scf7180002753850 528 correct 15313215 15317295 4102 1 CM091754.1 scf7180002753851 99.41 True CONTIG scf7180002753851 4102 correct 5197436 5202920 1 5246 CM091758.1 scf7180002753852 95.16 True fake: scaffold gap size wrong estimation (local) 5202900 5261438 7389 64878 CM091758.1 scf7180002753852 97.8 True fake: scaffold gap size wrong estimation (local) 5261457 5273600 70196 82382 CM091758.1 scf7180002753852 99.24 True fake: scaffold gap size wrong estimation (local) 5273716 5294481 82491 102733 CM091758.1 scf7180002753852 97.01 True indel: stretch of mismatches 5294482 5301938 102734 110187 CM091758.1 scf7180002753852 99.68 True fake: scaffold gap size wrong estimation (extensive) 5301816 5317007 119843 135069 CM091758.1 scf7180002753852 99.68 True local misassembly 5317469 5322918 135611 141054 CM091758.1 scf7180002753852 99.74 True fake: scaffold gap size wrong estimation (local) 5323233 5362489 144306 183050 CM091758.1 scf7180002753852 98.2 True fake: scaffold gap size wrong estimation (local) 5362631 5369302 183173 189879 CM091758.1 scf7180002753852 99.42 True fake: scaffold gap size wrong estimation (local) 5369540 5393544 190076 214078 CM091758.1 scf7180002753852 99.47 True CONTIG scf7180002753852 214078 correct 14750820 14756782 5998 1 CM091754.1 scf7180002753853 99.4 True CONTIG scf7180002753853 5998 correct 14801237 14802600 1365 1 CM091754.1 scf7180002753854 99.78 True CONTIG scf7180002753854 1365 correct 17332630 17343029 1 10022 CM091753.1 scf7180002753855 95.51 True fake: scaffold gap size wrong estimation (local) 17343794 17344464 12732 13402 CM091753.1 scf7180002753855 99.7 True fake: scaffold gap size wrong estimation (local) 17345243 17348369 13600 16726 CM091753.1 scf7180002753855 99.81 True fake: scaffold gap size wrong estimation (local) 17348865 17349368 17254 17757 CM091753.1 scf7180002753855 98.61 True fake: scaffold gap size wrong estimation (local) 17349859 17350389 18254 18784 CM091753.1 scf7180002753855 99.62 True fake: scaffold gap size wrong estimation (local) 17350390 17351421 18803 19834 CM091753.1 scf7180002753855 99.22 True CONTIG scf7180002753855 19834 correct 14790259 14792966 1 2693 CM091754.1 scf7180002753856 99.39 True CONTIG scf7180002753856 2693 correct 15131206 15132252 1045 1 CM091752.1 scf7180002753857 97.61 True CONTIG scf7180002753857 1045 correct 417752 432797 1 15056 CM091755.1 scf7180002753858 99.67 True CONTIG scf7180002753858 15056 correct 15087869 15088768 2334 1435 CM091751.1 scf7180002753859 97.56 True local misassembly 15086501 15087171 3005 2335 CM091751.1 scf7180002753859 99.7 True indel: indel (<= 5bp) 15085362 15086500 4145 3007 CM091751.1 scf7180002753859 98.16 True fake: scaffold gap size wrong estimation (local) 15084370 15085078 6875 6167 CM091751.1 scf7180002753859 99.72 True indel: indel (<= 5bp) 15083393 15084171 7851 7073 CM091751.1 scf7180002753859 100.0 True fake: scaffold gap size wrong estimation (local) 15079147 15081205 11383 9351 CM091751.1 scf7180002753859 98.24 True fake: scaffold gap size wrong estimation (local) 15077466 15078985 13038 11532 CM091751.1 scf7180002753859 98.55 True fake: scaffold gap size wrong estimation (local) 15075495 15076590 14697 13602 CM091751.1 scf7180002753859 99.73 True indel: indel (> 5bp) 15074596 15075432 15587 14751 CM091751.1 scf7180002753859 99.76 True fake: scaffold gap size wrong estimation (local) 15073228 15073988 16634 15874 CM091751.1 scf7180002753859 100.0 True indel: indel (<= 5bp) 15072262 15072960 17597 16899 CM091751.1 scf7180002753859 97.28 True indel: indel (<= 5bp) 15071173 15072261 18690 17602 CM091751.1 scf7180002753859 99.91 True indel: stretch of mismatches 15070497 15071113 19366 18750 CM091751.1 scf7180002753859 95.79 True fake: scaffold gap size wrong estimation (local) 15068058 15068884 21814 20988 CM091751.1 scf7180002753859 99.76 True indel: indel (<= 5bp) 15065610 15068056 24261 21815 CM091751.1 scf7180002753859 98.73 True local misassembly 15063169 15064867 26199 24501 CM091751.1 scf7180002753859 99.59 True fake: scaffold gap size wrong estimation (local) 15062014 15063100 27365 26279 CM091751.1 scf7180002753859 99.36 True indel: indel (<= 5bp) 15060728 15062013 28653 27368 CM091751.1 scf7180002753859 99.61 True local misassembly 15059685 15060366 29335 28654 CM091751.1 scf7180002753859 99.71 True fake: scaffold gap size wrong estimation (local) 15058028 15058759 31054 30323 CM091751.1 scf7180002753859 99.45 True local misassembly 15055820 15056636 33258 32442 CM091751.1 scf7180002753859 100.0 True local misassembly 15053464 15055261 35620 33823 CM091751.1 scf7180002753859 99.61 True indel: indel (> 5bp) 15052649 15053209 36429 35869 CM091751.1 scf7180002753859 100.0 True fake: scaffold gap size wrong estimation (local) 15051082 15052095 37987 36974 CM091751.1 scf7180002753859 95.96 True indel: indel (> 5bp) 15049904 15051072 39156 37988 CM091751.1 scf7180002753859 98.2 True fake: scaffold gap size wrong estimation (local) 15047159 15048091 40956 40024 CM091751.1 scf7180002753859 99.57 True indel: indel (<= 5bp) 15043736 15047157 44378 40957 CM091751.1 scf7180002753859 99.88 True CONTIG scf7180002753859 44378 correct 17303320 17304450 37 1169 CM091753.1 scf7180002753860 99.56 True fake: scaffold gap size wrong estimation (local) 17307451 17316518 4499 13545 CM091753.1 scf7180002753860 99.06 True CONTIG scf7180002753860 13550 correct 11481118 11485086 3983 1 CM091763.1 scf7180002753862 99.77 True fake: scaffold gap size wrong estimation (local) 11471496 11480581 12915 4109 CM091763.1 scf7180002753862 95.57 True fake: scaffold gap size wrong estimation (local) 11467658 11470581 16538 13598 CM091763.1 scf7180002753862 99.25 True CONTIG scf7180002753862 16538 correct 14934191 14935370 1181 1 CM091754.1 scf7180002753863 99.83 True CONTIG scf7180002753863 1181 correct 3192433 3193289 1 854 CM091752.1 scf7180002753864 99.42 True CONTIG scf7180002753864 854 correct 17373588 17374684 1097 1 CM091753.1 scf7180002753865 99.45 True CONTIG scf7180002753865 1097 correct 4699686 4700653 21 988 CM091754.1 scf7180002753866 97.73 True CONTIG scf7180002753866 988 correct CONTIG scf7180002753868 432 unaligned 15093727 15094682 722 1677 CM091751.1 scf7180002753869 99.79 True indel: stretch of mismatches 15094826 15096115 1821 3110 CM091751.1 scf7180002753869 100.0 True fake: scaffold gap size wrong estimation (local) 15096775 15098621 3361 5207 CM091751.1 scf7180002753869 99.84 True indel: indel (<= 5bp) 15098726 15100233 5315 6822 CM091751.1 scf7180002753869 99.67 True local misassembly 15100961 15101681 6966 7686 CM091751.1 scf7180002753869 97.23 True fake: scaffold gap size wrong estimation (local) 15102814 15103962 8889 10037 CM091751.1 scf7180002753869 97.39 True fake: scaffold gap size wrong estimation (local) 15104857 15105372 10604 11119 CM091751.1 scf7180002753869 99.42 True indel: indel (> 5bp) 15105415 15106621 11120 12326 CM091751.1 scf7180002753869 99.92 True fake: scaffold gap size wrong estimation (local) 15107281 15108054 14060 14833 CM091751.1 scf7180002753869 99.87 True local misassembly 15108153 15108762 14834 15443 CM091751.1 scf7180002753869 96.72 True fake: scaffold gap size wrong estimation (local) 15109295 15110096 15822 16623 CM091751.1 scf7180002753869 100.0 True fake: scaffold gap size wrong estimation (local) 15110137 15116032 17458 23328 CM091751.1 scf7180002753869 98.84 True fake: scaffold gap size wrong estimation (local) 15116147 15121246 23349 28650 CM091751.1 scf7180002753869 97.61 True fake: scaffold gap size wrong estimation (local) 15121861 15126376 29268 33894 CM091751.1 scf7180002753869 98.83 True fake: scaffold gap size wrong estimation (local) 15126732 15127309 36146 36757 CM091751.1 scf7180002753869 97.47 True fake: scaffold gap size wrong estimation (local) 15127668 15131978 37169 41475 CM091751.1 scf7180002753869 98.58 True CONTIG scf7180002753869 41475 correct 14203723 14216258 1 12552 CM091755.1 scf7180002753871 99.14 True CONTIG scf7180002753871 12552 correct 17149742 17150281 1 539 CM091752.1 scf7180002753873 99.63 True CONTIG scf7180002753873 586 correct 3880871 3958987 199 78497 CM091767.1 scf7180002753876 98.96 True indel: indel (> 5bp) 3959165 3966273 78700 85772 CM091767.1 scf7180002753876 98.89 True CONTIG scf7180002753876 85772 correct CONTIG scf7180002753877 467 unaligned 8427590 8472400 1 44813 CM091763.1 scf7180002753889 99.24 True CONTIG scf7180002753889 44813 correct 6121754 6234469 113410 1 CM091753.1 scf7180002753892 98.87 True local misassembly 6018888 6121560 216171 113470 CM091753.1 scf7180002753892 99.37 True CONTIG scf7180002753892 216171 correct CONTIG scf7180002753895 8404 unaligned 18935242 18944093 8869 41 CM091751.1 scf7180002753897 97.74 True CONTIG scf7180002753897 8897 correct 5845074 5846923 1852 1 CM091763.1 scf7180002753898 99.35 True CONTIG scf7180002753898 1852 correct 1767638 1771583 1 3954 CM091768.1 scf7180002753899 98.53 True CONTIG scf7180002753899 3954 correct 9136673 9137312 692 53 CM091767.1 scf7180002753901 99.38 True CONTIG scf7180002753901 692 correct CONTIG scf7180002753905 14315 unaligned 94322 103733 9412 1 CM091753.1 scf7180002753906 99.99 True CONTIG scf7180002753906 9412 correct 9139647 9144342 4690 1 CM091763.1 scf7180002753907 99.47 True CONTIG scf7180002753907 4690 correct 1988557 1989752 1461 266 CM091764.1 scf7180002753913 99.75 True CONTIG scf7180002753913 1461 correct 15430814 15437668 1 6864 CM091757.1 scf7180002753916 99.8 True CONTIG scf7180002753916 6864 correct CONTIG scf7180002753917 255 unaligned CONTIG scf7180002753918 201 unaligned 330998 335584 17 4604 CM091761.1 scf7180002753919 99.72 True CONTIG scf7180002753919 4604 correct 4521380 4546372 1 24066 CM091754.1 scf7180002753920 95.99 True fake: scaffold gap size wrong estimation (local) 4547429 4553440 24353 30357 CM091754.1 scf7180002753920 99.41 True CONTIG scf7180002753920 30357 correct CONTIG scf7180002753922 523 unaligned CONTIG scf7180002753923 312 unaligned 1723082 1726207 3185 1 CM091768.1 scf7180002753926 97.52 True CONTIG scf7180002753926 3433 correct 4250451 4257073 6639 1 CM091754.1 scf7180002753927 99.62 True CONTIG scf7180002753927 6639 correct 4618272 4618890 619 1 CM091754.1 scf7180002753928 100.0 True CONTIG scf7180002753928 619 correct 572041 574625 1 2669 CM091764.1 scf7180002753929 95.24 True CONTIG scf7180002753929 2669 correct 398112 402967 8 4867 CM091752.1 scf7180002753930 98.87 True CONTIG scf7180002753930 4867 correct 4732471 4735116 366 3011 CM091768.1 scf7180002753931 99.96 True fake: scaffold gap size wrong estimation (local) 4735682 4740835 3912 9051 CM091768.1 scf7180002753931 99.49 True CONTIG scf7180002753931 9077 correct 14157114 14158034 8 943 CM091760.1 scf7180002753932 97.23 True CONTIG scf7180002753932 943 correct 1863755 1868210 4529 1 CM091764.1 scf7180002753933 99.26 True CONTIG scf7180002753933 4529 correct 8146061 8148468 2408 1 CM091767.1 scf7180002753934 99.88 True CONTIG scf7180002753934 2408 correct 15464652 15465723 1072 1 CM091758.1 scf7180002753935 100.0 True CONTIG scf7180002753935 1072 correct CONTIG scf7180002753936 557 unaligned CONTIG scf7180002753941 5135 unaligned 10997046 10999534 1 2494 CM091766.1 scf7180002753942 99.64 True fake: scaffold gap size wrong estimation (local) 11000178 11016245 3080 19162 CM091766.1 scf7180002753942 99.53 True CONTIG scf7180002753942 19162 correct 6220609 6222240 24 1648 CM091768.1 scf7180002753943 99.26 True CONTIG scf7180002753943 1661 correct 20478682 20479290 411 1019 CM091751.1 scf7180002753946 99.67 True CONTIG scf7180002753946 1021 correct 11175611 11180236 4636 1 CM091765.1 scf7180002753947 99.91 True CONTIG scf7180002753947 4636 correct 3957182 3972519 1 15320 CM091764.1 scf7180002753948 99.47 True CONTIG scf7180002753948 15320 correct 9408447 9411321 2875 1 CM091767.1 scf7180002753949 99.97 True relocation, scaffold gap is present, inconsistency = 829389 8577982 8579037 3951 2896 CM091767.1 scf7180002753949 100.0 True fake: scaffold gap size wrong estimation (local) 8576354 8577604 5914 4664 CM091767.1 scf7180002753949 99.92 True fake: not a misassembly (possible transposable element) 9406348 9407490 7077 5935 CM091767.1 scf7180002753949 99.83 True fake: not a misassembly (possible transposable element) 8573318 8576470 10981 7829 CM091767.1 scf7180002753949 100.0 True CONTIG scf7180002753949 10981 misassembled 5061409 5085014 23764 29 CM091755.1 scf7180002753951 99.5 True fake: scaffold gap size wrong estimation (local) 5058948 5060999 29934 27883 CM091755.1 scf7180002753951 99.85 True fake: scaffold gap size wrong estimation (local) 4975588 5059058 115241 31875 CM091755.1 scf7180002753951 99.22 True CONTIG scf7180002753951 115255 correct 249158 263610 1 14037 CM091753.1 scf7180002753953 97.05 True CONTIG scf7180002753953 14037 correct 1767300 1768122 824 1 CM091762.1 scf7180002753956 99.89 True translocation 1526091 1527942 2677 825 CM091764.1 scf7180002753956 99.89 True CONTIG scf7180002753956 2677 misassembled 7715022 7717086 1 2064 CM091767.1 scf7180002753957 99.95 True fake: scaffold gap size wrong estimation (local) 7717184 7727978 2156 12892 CM091767.1 scf7180002753957 98.52 True CONTIG scf7180002753957 17671 correct 18519514 18525963 6447 17 CM091751.1 scf7180002753958 98.58 True CONTIG scf7180002753958 6447 correct 6458137 6460067 1932 1 CM091768.1 scf7180002753959 99.95 True CONTIG scf7180002753959 1932 correct 1521340 1526022 4706 23 CM091764.1 scf7180002753961 99.89 True CONTIG scf7180002753961 4855 correct 1941719 1944461 3167 417 CM091759.1 scf7180002753963 98.84 True CONTIG scf7180002753963 3167 correct CONTIG scf7180002753965 211 unaligned 3882382 3885604 3223 1 CM091768.1 scf7180002753968 99.88 True CONTIG scf7180002753968 3352 correct 5388624 5461299 72741 40 CM091754.1 scf7180002753971 99.84 True CONTIG scf7180002753971 72741 correct CONTIG scf7180002753972 71878 unaligned 12305104 12305705 6259 6856 CM091756.1 scf7180002753973 95.68 True CONTIG scf7180002753973 6856 correct_unaligned 3366208 3368987 1 2780 CM091752.1 scf7180002753974 99.39 True CONTIG scf7180002753974 3062 correct CONTIG scf7180002753975 40201 unaligned CONTIG scf7180002753976 38243 unaligned 4130871 4145278 16 14425 CM091768.1 scf7180002753977 99.93 True CONTIG scf7180002753977 14447 correct CONTIG scf7180002753979 248 unaligned 8722011 8740048 18052 1 CM091762.1 scf7180002753980 99.31 True indel: indel (<= 5bp) 8658003 8721989 81543 18076 CM091762.1 scf7180002753980 98.91 True relocation, scaffold gap is present, inconsistency = -14890 8611754 8657828 142658 96608 CM091762.1 scf7180002753980 99.9 True relocation, scaffold gap is present, inconsistency = -29089 8513028 8611875 270173 171626 CM091762.1 scf7180002753980 99.1 True CONTIG scf7180002753980 270173 misassembled 750369 798874 48399 1 CM091755.1 scf7180002753981 99.74 True CONTIG scf7180002753981 48399 correct 95700 99778 404 4482 CM091760.1 scf7180002753982 99.88 True local misassembly 104083 105091 4483 5491 CM091760.1 scf7180002753982 100.0 True indel: indel (> 5bp) 105092 107372 5534 7814 CM091760.1 scf7180002753982 99.91 True fake: scaffold gap size wrong estimation (local) 107981 109811 8416 10246 CM091760.1 scf7180002753982 99.89 True indel: indel (> 5bp) 109820 116526 10247 16953 CM091760.1 scf7180002753982 99.97 True indel: indel (<= 5bp) 116853 121940 17282 22369 CM091760.1 scf7180002753982 99.96 True indel: indel (<= 5bp) 121942 125699 22370 26127 CM091760.1 scf7180002753982 99.97 True indel: indel (<= 5bp) 125701 131309 26128 31736 CM091760.1 scf7180002753982 99.98 True indel: indel (<= 5bp) 131311 136160 31737 36586 CM091760.1 scf7180002753982 100.0 True indel: indel (<= 5bp) 136162 142800 36587 43225 CM091760.1 scf7180002753982 99.98 True indel: indel (<= 5bp) 143201 146256 43624 46679 CM091760.1 scf7180002753982 100.0 True indel: indel (<= 5bp) 146257 148094 46681 48518 CM091760.1 scf7180002753982 100.0 True CONTIG scf7180002753982 49506 correct 4776489 4779521 3033 1 CM091754.1 scf7180002753983 100.0 True CONTIG scf7180002753983 3033 correct 1675337 1679336 3981 1 CM091764.1 scf7180002753984 99.3 True CONTIG scf7180002753984 3981 correct 14825389 14836084 10742 1 CM091754.1 scf7180002753985 99.14 True fake: scaffold gap size wrong estimation (local) 14822989 14825223 13183 10916 CM091754.1 scf7180002753985 99.24 True CONTIG scf7180002753985 13213 correct 3163535 3171060 1 7526 CM091752.1 scf7180002753986 99.89 True CONTIG scf7180002753986 7526 correct 5411048 5411947 1631 732 CM091758.1 scf7180002753987 100.0 True indel: indel (> 5bp) 5410272 5411019 2387 1640 CM091758.1 scf7180002753987 99.87 True fake: scaffold gap size wrong estimation (local) 5407481 5408792 4852 3541 CM091758.1 scf7180002753987 99.92 True indel: indel (<= 5bp) 5406709 5407480 5626 4855 CM091758.1 scf7180002753987 100.0 True CONTIG scf7180002753987 5626 correct 15341796 15349665 7797 1 CM091754.1 scf7180002753988 98.48 True CONTIG scf7180002753988 7797 correct 10406119 10417858 11828 1 CM091763.1 scf7180002753989 98.13 True CONTIG scf7180002753989 12501 correct 10911214 10948791 36641 61 CM091766.1 scf7180002753990 97.07 True CONTIG scf7180002753990 36641 correct 5082126 5091339 9670 170 CM091768.1 scf7180002753991 98.88 True CONTIG scf7180002753991 9670 correct 1990475 2091201 100029 1 CM091754.1 scf7180002753992 98.91 True CONTIG scf7180002753992 100048 correct 11337256 11339086 8310 6477 CM091758.1 scf7180002753993 99.29 True CONTIG scf7180002753993 8350 correct_unaligned 159675 160214 540 1 CM091763.1 scf7180002753994 98.52 True indel: indel (> 5bp) 141131 159331 19054 855 CM091763.1 scf7180002753994 99.91 True CONTIG scf7180002753994 19054 correct 9865943 9867152 1551 342 CM091756.1 scf7180002753995 99.83 True CONTIG scf7180002753995 1926 correct 1087332 1093770 1 6424 CM091754.1 scf7180002753996 98.79 True CONTIG scf7180002753996 6429 correct 15990024 15993128 1 3105 CM091757.1 scf7180002753997 99.97 True CONTIG scf7180002753997 3105 correct 15686058 15687844 282 2068 CM091757.1 scf7180002753998 100.0 True CONTIG scf7180002753998 2068 correct 15820317 15827068 6750 1 CM091757.1 scf7180002753999 99.81 True CONTIG scf7180002753999 6758 correct 6165969 6174898 1 8926 CM091768.1 scf7180002754000 99.88 True CONTIG scf7180002754000 8926 correct 226567 238985 12139 1 CM091760.1 scf7180002754001 96.44 True CONTIG scf7180002754001 12139 correct 5092367 5114287 1 21994 CM091768.1 scf7180002754002 99.84 True CONTIG scf7180002754002 21994 correct 1419781 1432433 12654 1 CM091761.1 scf7180002754003 99.94 True CONTIG scf7180002754003 12654 correct 4727622 4730932 3311 1 CM091768.1 scf7180002754004 100.0 True CONTIG scf7180002754004 3319 correct 5538191 5542260 1 4230 CM091754.1 scf7180002754005 95.56 True CONTIG scf7180002754005 4230 correct 12312966 12320262 426 7718 CM091761.1 scf7180002754006 99.59 True CONTIG scf7180002754006 8009 correct 17642083 17644954 2872 1 CM091751.1 scf7180002754007 100.0 True CONTIG scf7180002754007 2872 correct 16263246 16269812 6567 1 CM091757.1 scf7180002754008 99.94 True CONTIG scf7180002754008 6567 correct 2872158 2875496 3376 55 CM091752.1 scf7180002754009 99.13 True CONTIG scf7180002754009 3376 correct 8087340 8092829 5489 1 CM091767.1 scf7180002754010 99.89 True CONTIG scf7180002754010 5489 correct 7437912 7452250 14400 16 CM091764.1 scf7180002754011 99.33 True CONTIG scf7180002754011 14400 correct CONTIG scf7180002754012 3758 unaligned 10480226 10491045 1 10511 CM091765.1 scf7180002754013 96.4 True CONTIG scf7180002754013 11218 correct 2838249 2847022 9685 882 CM091768.1 scf7180002754014 98.11 True CONTIG scf7180002754014 9685 correct 17531760 17534718 2959 1 CM091751.1 scf7180002754015 99.97 True CONTIG scf7180002754015 3201 correct 9115141 9118653 3513 1 CM091767.1 scf7180002754016 100.0 True CONTIG scf7180002754016 3513 correct 18532092 18534305 1 2214 CM091751.1 scf7180002754017 99.73 True CONTIG scf7180002754017 2231 correct 4749463 4755344 5920 21 CM091768.1 scf7180002754018 99.98 True CONTIG scf7180002754018 5920 correct 10352633 10355107 2505 33 CM091765.1 scf7180002754019 99.44 True fake: scaffold gap size wrong estimation (local) 10344717 10352465 10417 2655 CM091765.1 scf7180002754019 99.21 True CONTIG scf7180002754019 10975 correct 8353175 8357941 4774 8 CM091767.1 scf7180002754020 99.98 True fake: scaffold gap size wrong estimation (local) 8352015 8352580 6367 5802 CM091767.1 scf7180002754020 99.82 True indel: indel (<= 5bp) 8351112 8352014 7271 6369 CM091767.1 scf7180002754020 100.0 True indel: indel (<= 5bp) 8350131 8351111 8253 7273 CM091767.1 scf7180002754020 98.88 True CONTIG scf7180002754020 8253 correct 3293015 3309286 16274 1 CM091759.1 scf7180002754021 99.98 True CONTIG scf7180002754021 16274 correct 14203047 14204480 1433 1 CM091752.1 scf7180002754022 95.75 True CONTIG scf7180002754022 3092 correct_unaligned 1049969 1052048 304 2373 CM091753.1 scf7180002754023 96.67 True CONTIG scf7180002754023 2373 correct 4761679 4765680 4181 1 CM091768.1 scf7180002754024 96.59 True CONTIG scf7180002754024 4182 correct CONTIG scf7180002754025 1990 unaligned 1935030 1939015 1 3988 CM091759.1 scf7180002754026 99.62 True CONTIG scf7180002754026 3988 correct 2130654 2132950 2301 1 CM091764.1 scf7180002754027 99.74 True CONTIG scf7180002754027 2315 correct 41327 42076 750 1 CM091768.1 scf7180002754028 99.6 True CONTIG scf7180002754028 2981 correct_unaligned 4516024 4521833 1 5750 CM091768.1 scf7180002754029 98.26 True CONTIG scf7180002754029 5767 correct 2156258 2164881 8624 1 CM091764.1 scf7180002754030 99.93 True translocation 4801467 4801986 9144 8625 CM091752.1 scf7180002754030 97.7 True CONTIG scf7180002754030 9144 misassembled 4377368 4379880 2765 253 CM091768.1 scf7180002754031 100.0 True CONTIG scf7180002754031 2765 correct 4685166 4688109 1 2944 CM091768.1 scf7180002754032 100.0 True CONTIG scf7180002754032 2944 correct 13427093 13429299 2209 1 CM091758.1 scf7180002754033 99.82 True CONTIG scf7180002754033 2217 correct 3382899 3388451 5561 1 CM091768.1 scf7180002754034 99.26 True CONTIG scf7180002754034 5561 correct 4497034 4498911 1879 1 CM091768.1 scf7180002754035 99.95 True fake: scaffold gap size wrong estimation (local) 4492363 4496630 6416 2151 CM091768.1 scf7180002754035 99.72 True CONTIG scf7180002754035 6418 correct 15548013 15549298 1 1285 CM091757.1 scf7180002754036 99.84 True CONTIG scf7180002754036 1285 correct 4625101 4630346 18 5314 CM091768.1 scf7180002754037 99.18 True CONTIG scf7180002754037 5314 correct 88082 89871 1 1790 CM091763.1 scf7180002754038 99.89 True CONTIG scf7180002754038 1790 correct 8757063 8758919 1 1857 CM091767.1 scf7180002754039 99.84 True CONTIG scf7180002754039 1857 correct 8678959 8681087 2129 1 CM091767.1 scf7180002754040 99.91 True CONTIG scf7180002754040 2129 correct 213039 215085 2041 1 CM091753.1 scf7180002754041 98.69 True CONTIG scf7180002754041 2076 correct 4557000 4559702 2703 1 CM091754.1 scf7180002754042 100.0 True CONTIG scf7180002754042 2703 correct 16861714 16863463 1 1750 CM091756.1 scf7180002754043 100.0 True CONTIG scf7180002754043 1750 correct 15918743 15920657 1 1915 CM091757.1 scf7180002754044 100.0 True CONTIG scf7180002754044 1915 correct 4037053 4038690 1637 1 CM091768.1 scf7180002754045 99.61 True local misassembly 4033797 4036522 4363 1638 CM091768.1 scf7180002754045 100.0 True fake: scaffold gap size wrong estimation (local) 4024657 4033609 13721 4760 CM091768.1 scf7180002754045 99.85 True CONTIG scf7180002754045 13721 correct 9369114 9370829 1715 1 CM091767.1 scf7180002754046 99.88 True CONTIG scf7180002754046 1715 correct 16328367 16330538 2171 1 CM091752.1 scf7180002754047 99.91 True CONTIG scf7180002754047 2171 correct 14300398 14302719 2325 1 CM091760.1 scf7180002754048 98.41 True fake: scaffold gap size wrong estimation (local) 14289758 14299091 12404 3050 CM091760.1 scf7180002754048 98.89 True fake: scaffold gap size wrong estimation (local) 14287752 14289192 14162 12743 CM091760.1 scf7180002754048 97.64 True fake: scaffold gap size wrong estimation (local) 14274215 14287570 27772 14415 CM091760.1 scf7180002754048 99.85 True CONTIG scf7180002754048 27772 correct 17323714 17326137 1 2431 CM091753.1 scf7180002754049 99.67 True CONTIG scf7180002754049 2431 correct 11338894 11340399 1507 1 CM091761.1 scf7180002754050 99.6 True CONTIG scf7180002754050 1507 correct 9307924 9309604 1 1683 CM091767.1 scf7180002754051 99.82 True CONTIG scf7180002754051 1683 correct 4544250 4548939 4697 1 CM091768.1 scf7180002754052 99.76 True CONTIG scf7180002754052 4697 correct 634024 693298 41 59308 CM091755.1 scf7180002754053 99.91 True CONTIG scf7180002754053 59308 correct 2304234 2305761 1 1528 CM091764.1 scf7180002754054 100.0 True CONTIG scf7180002754054 1528 correct 2983745 2986024 22 2303 CM091752.1 scf7180002754055 99.82 True CONTIG scf7180002754055 2303 correct 17529469 17531652 2365 182 CM091751.1 scf7180002754056 100.0 True CONTIG scf7180002754056 2365 correct 1970382 2025556 1663 56872 CM091759.1 scf7180002754057 99.81 True indel: indel (> 5bp) 2025654 2121427 56989 152475 CM091759.1 scf7180002754057 99.34 True CONTIG scf7180002754057 152492 correct 4718182 4720486 238 2541 CM091763.1 scf7180002754058 99.35 True CONTIG scf7180002754058 2553 correct 4661102 4671722 1 10620 CM091768.1 scf7180002754059 99.96 True CONTIG scf7180002754059 10620 correct 5207190 5215697 8565 1 CM091768.1 scf7180002754060 99.69 True CONTIG scf7180002754060 8970 correct 3032642 3038154 5507 1 CM091752.1 scf7180002754061 99.67 True CONTIG scf7180002754061 5507 correct 4566520 4569801 3282 1 CM091754.1 scf7180002754062 99.88 True CONTIG scf7180002754062 3316 correct 12626984 12632715 34 5766 CM091759.1 scf7180002754063 99.56 True CONTIG scf7180002754063 5766 correct 11382467 11383988 1 1511 CM091765.1 scf7180002754064 99.28 True CONTIG scf7180002754064 1511 correct 15454332 15462211 1 7882 CM091757.1 scf7180002754065 99.92 True fake: scaffold gap size wrong estimation (local) 15462423 15463656 8117 9350 CM091757.1 scf7180002754065 100.0 True fake: scaffold gap size wrong estimation (local) 15464309 15466896 10325 12912 CM091757.1 scf7180002754065 99.85 True fake: scaffold gap size wrong estimation (local) 15467155 15470374 13610 16829 CM091757.1 scf7180002754065 99.53 True CONTIG scf7180002754065 18177 correct 1265576 1273616 1 8040 CM091753.1 scf7180002754066 99.96 True CONTIG scf7180002754066 8040 correct 4653385 4657774 5914 1526 CM091768.1 scf7180002754067 99.98 True relocation, scaffold gap is present, inconsistency = -29364 4677559 4682186 11105 6477 CM091768.1 scf7180002754067 99.63 True CONTIG scf7180002754067 11105 misassembled 19517294 19519027 1 1733 CM091751.1 scf7180002754068 99.42 True fake: scaffold gap size wrong estimation (local) 19520150 19520655 3153 3658 CM091751.1 scf7180002754068 100.0 True local misassembly 19522412 19529278 5284 12149 CM091751.1 scf7180002754068 97.44 True CONTIG scf7180002754068 12149 correct 11282512 11286335 3828 4 CM091766.1 scf7180002754069 99.95 True CONTIG scf7180002754069 3828 correct 8033061 8037861 1 4801 CM091767.1 scf7180002754070 99.94 True CONTIG scf7180002754070 4801 correct 15790731 15792101 1372 1 CM091757.1 scf7180002754071 99.93 True CONTIG scf7180002754071 1372 correct 1310846 1312627 1782 1 CM091755.1 scf7180002754072 100.0 True CONTIG scf7180002754072 1782 correct 7433370 7434863 15 1507 CM091764.1 scf7180002754073 98.93 True local misassembly 7435287 7437298 2269 4275 CM091764.1 scf7180002754073 98.81 True CONTIG scf7180002754073 4275 correct 8942996 8944698 1 1703 CM091767.1 scf7180002754074 100.0 True fake: scaffold gap size wrong estimation (local) 8944829 8952288 1785 9097 CM091767.1 scf7180002754074 98.0 True fake: scaffold gap size wrong estimation (local) 8952190 8953190 10038 11038 CM091767.1 scf7180002754074 99.9 True fake: scaffold gap size wrong estimation (local) 8954427 8955441 12456 13470 CM091767.1 scf7180002754074 99.9 True relocation, scaffold gap is present, inconsistency = 91128 9046792 9047652 14553 13693 CM091767.1 scf7180002754074 97.21 True indel: indel (<= 5bp) 9045571 9046791 15775 14555 CM091767.1 scf7180002754074 99.92 True fake: not a misassembly (possible transposable element) 8682057 8684035 18247 16269 CM091767.1 scf7180002754074 100.0 True fake: not a misassembly (possible transposable element) 9043682 9045080 19666 18268 CM091767.1 scf7180002754074 99.93 True fake: scaffold gap size wrong estimation (local) 9039507 9043056 23795 20245 CM091767.1 scf7180002754074 99.86 True CONTIG scf7180002754074 23817 misassembled 9229129 9229649 521 1 CM091763.1 scf7180002754075 100.0 True indel: indel (<= 5bp) 9227906 9229102 1743 547 CM091763.1 scf7180002754075 100.0 True fake: scaffold gap size wrong estimation (local) 9223645 9226387 4849 2107 CM091763.1 scf7180002754075 99.78 True CONTIG scf7180002754075 5960 correct 1911643 1913932 2290 1 CM091764.1 scf7180002754076 99.83 True CONTIG scf7180002754076 2290 correct 8992456 8996736 4282 1 CM091767.1 scf7180002754077 99.81 True local misassembly 8987904 8989782 6321 4443 CM091767.1 scf7180002754077 99.52 True CONTIG scf7180002754077 6321 correct 18850228 18863752 372 13875 CM091751.1 scf7180002754078 97.72 True CONTIG scf7180002754078 14235 correct 10752768 10755962 3195 1 CM091765.1 scf7180002754079 99.91 True CONTIG scf7180002754079 3195 correct 5231269 5246007 14505 1 CM091768.1 scf7180002754080 98.09 True CONTIG scf7180002754080 14505 correct CONTIG scf7180002754081 2210 unaligned 5820978 5835473 210 14266 CM091767.1 scf7180002754082 95.88 True fake: scaffold gap size wrong estimation (local) 5835476 5845507 14294 24021 CM091767.1 scf7180002754082 96.43 True fake: scaffold gap size wrong estimation (local) 5845864 5849750 24189 28074 CM091767.1 scf7180002754082 98.4 True relocation, inconsistency = 45342 5799754 5800521 28889 28075 CM091767.1 scf7180002754082 95.04 True CONTIG scf7180002754082 28889 misassembled 33999 42146 1 8148 CM091753.1 scf7180002754083 99.91 True CONTIG scf7180002754083 8154 correct 8226086 8229729 3644 1 CM091767.1 scf7180002754084 99.62 True CONTIG scf7180002754084 3644 correct 4626802 4628657 1 1856 CM091754.1 scf7180002754085 99.57 True CONTIG scf7180002754085 1888 correct 9243937 9246025 1 2087 CM091767.1 scf7180002754086 99.62 True CONTIG scf7180002754086 2212 correct CONTIG scf7180002754087 5397 unaligned 2951464 2952788 1 1325 CM091752.1 scf7180002754088 99.92 True indel: indel (> 5bp) 2952789 2954620 1350 3181 CM091752.1 scf7180002754088 99.95 True fake: scaffold gap size wrong estimation (local) 2954621 2956462 3207 5048 CM091752.1 scf7180002754088 100.0 True indel: indel (<= 5bp) 2956463 2958936 5050 7523 CM091752.1 scf7180002754088 99.47 True local misassembly 2959934 2960543 7524 8133 CM091752.1 scf7180002754088 96.07 True indel: indel (<= 5bp) 2960546 2961898 8134 9486 CM091752.1 scf7180002754088 96.23 True CONTIG scf7180002754088 9486 correct 2918226 2922074 3855 10 CM091752.1 scf7180002754089 99.82 True CONTIG scf7180002754089 3855 correct 9416862 9418372 1510 1 CM091767.1 scf7180002754090 99.54 True CONTIG scf7180002754090 1560 correct 8921199 8926503 230 5569 CM091767.1 scf7180002754091 99.55 True CONTIG scf7180002754091 5569 correct 4390278 4399537 9179 1 CM091768.1 scf7180002754092 98.71 True CONTIG scf7180002754092 9179 correct 10472234 10478118 5891 1 CM091765.1 scf7180002754093 99.83 True CONTIG scf7180002754093 5965 correct 4144539 4160932 16393 1 CM091754.1 scf7180002754094 99.95 True fake: scaffold gap size wrong estimation (local) 4122972 4144429 38078 16608 CM091754.1 scf7180002754094 99.97 True CONTIG scf7180002754094 38078 correct 6142678 6148842 6165 1 CM091768.1 scf7180002754095 100.0 True CONTIG scf7180002754095 6165 correct 6155440 6158747 1 3308 CM091768.1 scf7180002754096 99.94 True fake: scaffold gap size wrong estimation (local) 6159410 6164447 3467 8511 CM091768.1 scf7180002754096 99.88 True CONTIG scf7180002754096 8527 correct CONTIG scf7180002754097 4219 unaligned 2138472 2141383 2912 1 CM091764.1 scf7180002754098 99.93 True CONTIG scf7180002754098 2912 correct 11036986 11041361 500 4875 CM091765.1 scf7180002754099 99.98 True CONTIG scf7180002754099 4875 correct 4488752 4490098 1347 1 CM091768.1 scf7180002754100 100.0 True CONTIG scf7180002754100 1347 correct 3946832 4021519 74698 2 CM091768.1 scf7180002754101 99.93 True indel: indel (> 5bp) 3943940 3946717 77579 74805 CM091768.1 scf7180002754101 97.91 True local misassembly 3941238 3943158 79506 77587 CM091768.1 scf7180002754101 99.64 True CONTIG scf7180002754101 79506 correct 3748001 3756346 1 8404 CM091752.1 scf7180002754102 98.42 True CONTIG scf7180002754102 8404 correct CONTIG scf7180002754103 1995 unaligned 15272494 15273663 49 1218 CM091758.1 scf7180002754104 99.32 True CONTIG scf7180002754104 1218 correct 97326 98791 1 1476 CM091752.1 scf7180002754105 98.31 True CONTIG scf7180002754105 1747 correct 11412871 11414186 1314 1 CM091765.1 scf7180002754106 99.62 True CONTIG scf7180002754106 1314 correct CONTIG scf7180002754107 9399 unaligned 8289987 8292171 2185 1 CM091767.1 scf7180002754108 99.73 True CONTIG scf7180002754108 2237 correct 8580344 8586444 6101 1 CM091767.1 scf7180002754109 99.93 True CONTIG scf7180002754109 6117 correct 127506 139404 11896 1 CM091761.1 scf7180002754110 99.88 True CONTIG scf7180002754110 11896 correct 13493547 13501812 1 8265 CM091758.1 scf7180002754111 99.92 True CONTIG scf7180002754111 8275 correct CONTIG scf7180002754112 39321 unaligned CONTIG scf7180002754113 25908 unaligned 8017726 8021130 3437 1 CM091767.1 scf7180002754114 99.28 True fake: scaffold gap size wrong estimation (local) 8014829 8017534 6328 3623 CM091767.1 scf7180002754114 99.93 True CONTIG scf7180002754114 7070 correct 4232762 4244943 12509 1 CM091754.1 scf7180002754115 97.37 True CONTIG scf7180002754115 12548 correct 11210163 11210726 1 563 CM091759.1 scf7180002754116 98.58 True translocation 18551730 18553568 768 2595 CM091751.1 scf7180002754116 97.72 True CONTIG scf7180002754116 2599 misassembled 13833109 13834407 409 1715 CM091754.1 scf7180002754117 98.55 True CONTIG scf7180002754117 2688 correct_unaligned 2850168 2853449 15 3293 CM091762.1 scf7180002754118 99.63 True CONTIG scf7180002754118 3293 correct 4012961 4015133 1 2173 CM091752.1 scf7180002754119 99.95 True CONTIG scf7180002754119 2221 correct 142531 146507 47 4025 CM091761.1 scf7180002754120 99.92 True CONTIG scf7180002754120 4025 correct 17207093 17208582 2880 1397 CM091752.1 scf7180002754121 98.86 True CONTIG scf7180002754121 2880 correct 519879 521479 1605 6 CM091764.1 scf7180002754122 99.56 True CONTIG scf7180002754122 1914 correct 15796498 15798103 360 1965 CM091757.1 scf7180002754123 99.63 True CONTIG scf7180002754123 2017 correct 3312020 3319135 7113 1 CM091753.1 scf7180002754124 99.72 True CONTIG scf7180002754124 7113 correct 2919288 2962756 43459 1 CM091759.1 scf7180002754125 99.85 True CONTIG scf7180002754125 43459 correct 10434830 10464996 30066 46 CM091755.1 scf7180002754126 98.87 True fake: scaffold gap size wrong estimation (local) 10433539 10434112 31514 30941 CM091755.1 scf7180002754126 99.65 True local misassembly 10432929 10433513 32210 31626 CM091755.1 scf7180002754126 100.0 True local misassembly 10427014 10432449 37831 32410 CM091755.1 scf7180002754126 98.5 True fake: scaffold gap size wrong estimation (local) 10374126 10426493 91991 39640 CM091755.1 scf7180002754126 99.69 True CONTIG scf7180002754126 91991 correct 7794542 7799193 4667 1 CM091767.1 scf7180002754127 99.83 True fake: scaffold gap size wrong estimation (local) 7790701 7793055 7179 4787 CM091767.1 scf7180002754127 99.96 True fake: scaffold gap size wrong estimation (local) 7782440 7790584 15436 7306 CM091767.1 scf7180002754127 99.68 True CONTIG scf7180002754127 15436 correct 10672151 10698719 1 26552 CM091765.1 scf7180002754128 99.8 True CONTIG scf7180002754128 26552 correct 4688210 4694666 1 6460 CM091754.1 scf7180002754129 99.83 True CONTIG scf7180002754129 6509 correct 10981641 11003506 1 21880 CM091765.1 scf7180002754130 99.78 True CONTIG scf7180002754130 21880 correct 11426595 11439559 1 13005 CM091765.1 scf7180002754131 99.73 True CONTIG scf7180002754131 13005 correct 15977913 15987149 1 9219 CM091757.1 scf7180002754132 99.79 True CONTIG scf7180002754132 9236 correct 12893985 12896010 11 2036 CM091754.1 scf7180002754133 99.61 True local misassembly 12897225 12898786 2545 4106 CM091754.1 scf7180002754133 98.85 True indel: indel (> 5bp) 12898830 12899727 4107 5004 CM091754.1 scf7180002754133 99.55 True local misassembly 12901160 12907440 6444 12713 CM091754.1 scf7180002754133 96.93 True indel: indel (> 5bp) 12907693 12919821 12979 25153 CM091754.1 scf7180002754133 98.67 True CONTIG scf7180002754133 25153 correct 6150247 6153364 3072 1 CM091768.1 scf7180002754134 98.05 True CONTIG scf7180002754134 3072 correct 10596377 10600096 1 3719 CM091765.1 scf7180002754135 99.95 True indel: indel (<= 5bp) 10600308 10601502 3933 5127 CM091765.1 scf7180002754135 99.92 True CONTIG scf7180002754135 5127 correct 219353 222018 2679 15 CM091753.1 scf7180002754136 99.55 True indel: indel (> 5bp) 216121 219289 5920 2752 CM091753.1 scf7180002754136 99.97 True CONTIG scf7180002754136 5920 correct 11747584 11809472 12 61798 CM091763.1 scf7180002754137 99.48 True relocation, scaffold gap is present, inconsistency = -18600 11809518 11835739 80444 106638 CM091763.1 scf7180002754137 99.75 True CONTIG scf7180002754137 106728 misassembled 2122227 2128981 6758 1 CM091759.1 scf7180002754138 99.6 True CONTIG scf7180002754138 6758 correct 55151 116366 59215 1 CM091768.1 scf7180002754139 96.32 True CONTIG scf7180002754139 59215 correct 40428 68197 1 27761 CM091761.1 scf7180002754140 99.73 True relocation, inconsistency = 34097 102295 123899 27762 49353 CM091761.1 scf7180002754140 99.85 True CONTIG scf7180002754140 49353 misassembled 11714886 11807580 1 92712 CM091754.1 scf7180002754141 99.41 True relocation, scaffold gap is present, inconsistency = -17624 11808011 11812081 110767 114808 CM091754.1 scf7180002754141 98.82 True fake: scaffold gap size wrong estimation (local) 11812047 11822503 118527 128992 CM091754.1 scf7180002754141 99.39 True fake: scaffold gap size wrong estimation (local) 11822454 11876378 133488 187580 CM091754.1 scf7180002754141 99.14 True indel: indel (> 5bp) 11876540 11902480 187721 213690 CM091754.1 scf7180002754141 98.89 True CONTIG scf7180002754141 213690 misassembled 4370633 4376645 26 6038 CM091754.1 scf7180002754142 99.97 True CONTIG scf7180002754142 6319 correct CONTIG scf7180002754143 55628 unaligned 1748098 1752140 1 4039 CM091764.1 scf7180002754144 99.88 True CONTIG scf7180002754144 4039 correct 1997872 1998600 1 729 CM091751.1 scf7180002754145 99.45 True indel: indel (<= 5bp) 1998748 2000262 878 2392 CM091751.1 scf7180002754145 99.67 True indel: indel (> 5bp) 2000657 2001298 2780 3421 CM091751.1 scf7180002754145 99.69 True local misassembly 2002397 2005204 4052 6859 CM091751.1 scf7180002754145 99.72 True indel: indel (<= 5bp) 2005207 2006146 6860 7799 CM091751.1 scf7180002754145 99.47 True CONTIG scf7180002754145 8235 correct 8342493 8345891 3400 1 CM091767.1 scf7180002754146 99.85 True relocation, inconsistency = -99658 8437535 8442150 8043 3401 CM091767.1 scf7180002754146 99.05 True CONTIG scf7180002754146 8043 misassembled 17668341 17684739 16399 1 CM091751.1 scf7180002754147 99.91 True local misassembly 17660721 17665218 20898 16400 CM091751.1 scf7180002754147 99.54 True CONTIG scf7180002754147 20898 correct 2410287 2412285 2484 496 CM091760.1 scf7180002754148 98.45 True indel: indel (> 5bp) 2404258 2410073 8504 2689 CM091760.1 scf7180002754148 99.88 True CONTIG scf7180002754148 8504 correct 2032086 2036290 1 4203 CM091764.1 scf7180002754149 99.76 True local misassembly 2036914 2043350 4788 11230 CM091764.1 scf7180002754149 99.8 True CONTIG scf7180002754149 11231 correct 4314937 4315471 535 1 CM091754.1 scf7180002754150 98.91 True translocation 11313689 11315526 536 2373 CM091765.1 scf7180002754150 99.35 True CONTIG scf7180002754150 2373 misassembled 54866 55868 1298 296 CM091763.1 scf7180002754151 99.7 True indel: indel (<= 5bp) 52663 54864 3500 1299 CM091763.1 scf7180002754151 99.77 True CONTIG scf7180002754151 5659 correct 16480458 16481472 1353 2366 CM091752.1 scf7180002754152 99.7 True CONTIG scf7180002754152 2366 correct_unaligned 2968470 2973667 5214 18 CM091752.1 scf7180002754153 99.75 True CONTIG scf7180002754153 5214 correct 1486988 1489040 4587 6639 CM091755.1 scf7180002754154 99.85 True CONTIG scf7180002754154 6639 correct_unaligned CONTIG scf7180002754155 1861 unaligned 10013466 10029355 1 15691 CM091751.1 scf7180002754156 98.58 True fake: scaffold gap size wrong estimation (local) 10029482 10076115 15808 62469 CM091751.1 scf7180002754156 99.65 True CONTIG scf7180002754156 62583 correct 6050988 6055036 4047 1 CM091768.1 scf7180002754157 99.93 True fake: scaffold gap size wrong estimation (local) 6048850 6050518 6431 4763 CM091768.1 scf7180002754157 99.94 True fake: scaffold gap size wrong estimation (local) 6047795 6048561 8085 7319 CM091768.1 scf7180002754157 100.0 True fake: scaffold gap size wrong estimation (local) 6034501 6047688 21720 8623 CM091768.1 scf7180002754157 99.19 True CONTIG scf7180002754157 21720 correct 15921666 15923938 1 2229 CM091757.1 scf7180002754158 98.06 True CONTIG scf7180002754158 2685 correct 11771608 11802921 31320 1 CM091758.1 scf7180002754159 99.82 True CONTIG scf7180002754159 31320 correct 6300724 6303028 2305 1 CM091768.1 scf7180002754160 99.96 True CONTIG scf7180002754160 2323 correct 4633085 4647165 1 14040 CM091768.1 scf7180002754161 99.68 True CONTIG scf7180002754161 14040 correct 13710259 13715432 1 5187 CM091755.1 scf7180002754162 99.46 True CONTIG scf7180002754162 5187 correct 3409720 3411341 1723 141 CM091768.1 scf7180002754163 96.86 True indel: indel (> 5bp) 3408402 3409581 3021 1841 CM091768.1 scf7180002754163 98.14 True local misassembly 3396522 3405105 11946 3466 CM091768.1 scf7180002754163 98.09 True CONTIG scf7180002754163 11946 correct 18867904 18870374 1 2464 CM091751.1 scf7180002754164 98.7 True CONTIG scf7180002754164 2495 correct 7800424 7803102 2679 1 CM091767.1 scf7180002754165 99.78 True CONTIG scf7180002754165 2679 correct 3546364 3548640 4915 7185 CM091753.1 scf7180002754166 99.52 True CONTIG scf7180002754166 13426 correct_unaligned 16027826 16031291 3466 1 CM091757.1 scf7180002754167 99.94 True CONTIG scf7180002754167 3466 correct 8673908 8677742 3890 57 CM091767.1 scf7180002754168 99.79 True CONTIG scf7180002754168 3890 correct CONTIG scf7180002754169 12284 unaligned 442161 450730 1 8570 CM091753.1 scf7180002754170 100.0 True CONTIG scf7180002754170 8577 correct 5410256 5412463 1 2208 CM091764.1 scf7180002754171 99.95 True CONTIG scf7180002754171 2208 correct 160358 160956 3639 3045 CM091753.1 scf7180002754172 98.16 True CONTIG scf7180002754172 3639 correct_unaligned 18408209 18408941 1 734 CM091752.1 scf7180002754173 96.73 True relocation, inconsistency = -3276399 15133526 15135223 1718 3406 CM091752.1 scf7180002754173 97.29 True CONTIG scf7180002754173 3406 misassembled 4045907 4048871 2965 1 CM091752.1 scf7180002754174 99.93 True CONTIG scf7180002754174 2965 correct 7994164 8002697 8268 1 CM091767.1 scf7180002754175 96.82 True local misassembly 7992226 7993233 9695 8688 CM091767.1 scf7180002754175 99.21 True CONTIG scf7180002754175 9700 correct 4692235 4694302 2398 335 CM091768.1 scf7180002754176 99.37 True CONTIG scf7180002754176 2398 correct 6401481 6404493 3013 1 CM091768.1 scf7180002754177 99.93 True CONTIG scf7180002754177 3013 correct 3699038 3700106 24 1092 CM091768.1 scf7180002754178 99.81 True CONTIG scf7180002754178 2055 correct 15855744 15861760 6127 47 CM091757.1 scf7180002754179 99.54 True fake: scaffold gap size wrong estimation (local) 15849825 15854877 11200 6148 CM091757.1 scf7180002754179 99.96 True translocation, scaffold gap is present 16040854 16041505 11221 11872 CM091752.1 scf7180002754179 99.08 True CONTIG scf7180002754179 16129 misassembled 16228718 16230892 2175 1 CM091757.1 scf7180002754180 99.26 True local misassembly 16224271 16227306 5598 2563 CM091757.1 scf7180002754180 99.67 True CONTIG scf7180002754180 5598 correct 13399766 13423155 23406 1 CM091758.1 scf7180002754181 99.85 True CONTIG scf7180002754181 23406 correct 13188910 13207973 1665 20421 CM091751.1 scf7180002754182 97.85 True CONTIG scf7180002754182 20765 correct 617824 619876 2064 12 CM091755.1 scf7180002754183 99.81 True CONTIG scf7180002754183 2064 correct 1485011 1492581 1 7573 CM091764.1 scf7180002754184 99.96 True CONTIG scf7180002754184 7573 correct 8198320 8201465 3164 19 CM091767.1 scf7180002754185 99.9 True CONTIG scf7180002754185 3270 correct 16290870 16293219 446 2795 CM091757.1 scf7180002754186 99.79 True fake: scaffold gap size wrong estimation (local) 16293526 16295216 3849 5539 CM091757.1 scf7180002754186 100.0 True fake: not a misassembly (possible transposable element) 16040908 16045408 10068 5560 CM091757.1 scf7180002754186 99.98 True fake: not a misassembly (possible transposable element) 16300187 16301538 10097 11443 CM091757.1 scf7180002754186 99.33 True relocation, scaffold gap is present, inconsistency = 260061 16034384 16040105 17185 11464 CM091757.1 scf7180002754186 99.98 True relocation, scaffold gap is present, inconsistency = -289905 16323496 16324268 17979 17206 CM091757.1 scf7180002754186 98.58 True relocation, inconsistency = 19953 16302763 16303412 18110 18759 CM091757.1 scf7180002754186 99.54 True fake: scaffold gap size wrong estimation (local) 16303413 16305399 19898 21884 CM091757.1 scf7180002754186 100.0 True CONTIG scf7180002754186 23419 misassembled 6382534 6384746 18 2230 CM091768.1 scf7180002754187 99.55 True CONTIG scf7180002754187 2230 correct 4154196 4154797 2 603 CM091768.1 scf7180002754188 98.36 True translocation 17397894 17403333 6057 604 CM091751.1 scf7180002754188 99.74 True CONTIG scf7180002754188 6057 misassembled 1464852 1470828 1 5977 CM091764.1 scf7180002754189 99.82 True CONTIG scf7180002754189 5977 correct CONTIG scf7180002754190 8635 unaligned 2444214 2445648 4704 6138 CM091760.1 scf7180002754191 99.65 True CONTIG scf7180002754191 6884 correct_unaligned 17304322 17308294 3974 1 CM091752.1 scf7180002754192 99.42 True CONTIG scf7180002754192 3974 correct 19026728 19030665 3957 1 CM091751.1 scf7180002754193 97.83 True CONTIG scf7180002754193 3957 correct 12225278 12230463 13 5199 CM091756.1 scf7180002754194 98.98 True fake: scaffold gap size wrong estimation (local) 12233590 12281376 6921 54731 CM091756.1 scf7180002754194 99.64 True fake: scaffold gap size wrong estimation (local) 12281298 12289135 55204 63100 CM091756.1 scf7180002754194 99.04 True CONTIG scf7180002754194 63393 correct 15841415 15844554 3141 1 CM091757.1 scf7180002754195 99.87 True CONTIG scf7180002754195 3141 correct 361795 362397 603 1 CM091764.1 scf7180002754196 99.86 True relocation, inconsistency = 519314 881712 886331 604 5224 CM091764.1 scf7180002754196 99.94 True CONTIG scf7180002754196 5224 misassembled 13663114 13663697 281 864 CM091755.1 scf7180002754197 99.49 True local misassembly 13664449 13665269 1377 2197 CM091755.1 scf7180002754197 99.03 True indel: indel (> 5bp) 13665270 13668098 2219 5047 CM091755.1 scf7180002754197 99.82 True CONTIG scf7180002754197 5047 correct 11340163 11342692 2530 1 CM091765.1 scf7180002754198 99.88 True CONTIG scf7180002754198 2530 correct 70713 73294 2584 1 CM091763.1 scf7180002754199 99.88 True CONTIG scf7180002754199 2584 correct 9495248 9495770 805 285 CM091765.1 scf7180002754200 98.47 True CONTIG scf7180002754200 4444 correct_unaligned 3315493 3318314 2837 15 CM091759.1 scf7180002754201 99.89 True CONTIG scf7180002754201 2857 correct 4956330 4960696 1 4365 CM091768.1 scf7180002754202 99.95 True CONTIG scf7180002754202 4365 correct 8366178 8369327 3150 1 CM091767.1 scf7180002754203 99.81 True CONTIG scf7180002754203 3150 correct 18749231 18750777 1548 19 CM091751.1 scf7180002754204 97.29 True CONTIG scf7180002754204 1548 correct 9851749 9854100 2352 1 CM091756.1 scf7180002754205 99.32 True CONTIG scf7180002754205 2352 correct 9165597 9168064 2468 1 CM091763.1 scf7180002754206 99.68 True indel: indel (<= 5bp) 9164468 9165596 3598 2470 CM091763.1 scf7180002754206 99.38 True indel: indel (> 5bp) 9163939 9164444 4133 3628 CM091763.1 scf7180002754206 95.26 True fake: scaffold gap size wrong estimation (local) 9152282 9163075 15003 4438 CM091763.1 scf7180002754206 97.36 True CONTIG scf7180002754206 15003 correct CONTIG scf7180002754207 154995 unaligned 8156168 8159002 1 2835 CM091767.1 scf7180002754208 100.0 True CONTIG scf7180002754208 2835 correct 162610 164895 2362 98 CM091763.1 scf7180002754209 98.78 True CONTIG scf7180002754209 2362 correct 9477528 9478304 1 777 CM091765.1 scf7180002754210 99.74 True CONTIG scf7180002754210 4126 correct_unaligned CONTIG scf7180002754211 10762 unaligned 4345724 4348255 2968 430 CM091754.1 scf7180002754212 99.09 True CONTIG scf7180002754212 2981 correct 5392183 5394556 2368 16 CM091764.1 scf7180002754213 98.4 True CONTIG scf7180002754213 2425 correct 2911931 2916319 1 4389 CM091768.1 scf7180002754214 99.32 True relocation, inconsistency = 15602 2931922 2932542 4390 5010 CM091768.1 scf7180002754214 98.86 True CONTIG scf7180002754214 5010 misassembled 13054121 13057168 3048 1 CM091755.1 scf7180002754215 99.28 True CONTIG scf7180002754215 3614 correct 1312953 1313651 3 702 CM091752.1 scf7180002754216 98.0 True CONTIG scf7180002754216 702 correct CONTIG scf7180002754217 4477 unaligned 11384545 11389564 184 5204 CM091765.1 scf7180002754218 99.92 True CONTIG scf7180002754218 5204 correct 1423928 1425718 6066 4276 CM091755.1 scf7180002754219 99.83 True CONTIG scf7180002754219 6066 correct_unaligned 16703494 16706810 1 3319 CM091752.1 scf7180002754220 99.82 True CONTIG scf7180002754220 3319 correct 9078884 9081768 1 2884 CM091767.1 scf7180002754221 99.72 True CONTIG scf7180002754221 2884 correct 11345896 11351065 5170 1 CM091765.1 scf7180002754222 99.98 True CONTIG scf7180002754222 5170 correct 2415046 2419658 11 4641 CM091760.1 scf7180002754223 99.31 True CONTIG scf7180002754223 4641 correct 1609785 1610917 1 1133 CM091764.1 scf7180002754224 99.91 True indel: indel (> 5bp) 1611040 1615025 1272 5258 CM091764.1 scf7180002754224 99.35 True CONTIG scf7180002754224 5258 correct 1366334 1369503 1 3170 CM091764.1 scf7180002754225 99.4 True CONTIG scf7180002754225 3170 correct CONTIG scf7180002754226 2872 unaligned 16258241 16261268 69 3095 CM091757.1 scf7180002754227 99.8 True CONTIG scf7180002754227 3095 correct 16439059 16441608 1 2550 CM091752.1 scf7180002754228 99.96 True CONTIG scf7180002754228 2550 correct 312767 315608 17 2855 CM091764.1 scf7180002754229 98.21 True CONTIG scf7180002754229 2932 correct CONTIG scf7180002754230 2483 unaligned 4215529 4219571 4044 1 CM091762.1 scf7180002754231 99.63 True CONTIG scf7180002754231 4044 correct 14310746 14337009 1 26392 CM091760.1 scf7180002754232 99.32 True relocation, scaffold gap is present, inconsistency = -10906 14337041 14343255 37330 43573 CM091760.1 scf7180002754232 98.72 True fake: scaffold gap size wrong estimation (local) 14343883 14344686 44681 45485 CM091760.1 scf7180002754232 99.38 True CONTIG scf7180002754232 45485 misassembled 9872736 9876929 4197 1 CM091756.1 scf7180002754233 99.05 True CONTIG scf7180002754233 4197 correct 6466685 6468941 2311 45 CM091768.1 scf7180002754234 99.12 True CONTIG scf7180002754234 2311 correct 2935444 2941259 1 5750 CM091768.1 scf7180002754235 97.77 True CONTIG scf7180002754235 5758 correct 15998892 16002259 86 3448 CM091757.1 scf7180002754236 99.82 True CONTIG scf7180002754236 3764 correct 3005404 3011588 6174 1 CM091752.1 scf7180002754237 99.79 True CONTIG scf7180002754237 6174 correct 7920105 7929465 1 9353 CM091767.1 scf7180002754238 99.54 True CONTIG scf7180002754238 9353 correct 8845663 8855371 9562 206 CM091767.1 scf7180002754239 96.0 True CONTIG scf7180002754239 9562 correct 15784261 15790790 6530 1 CM091757.1 scf7180002754240 100.0 True CONTIG scf7180002754240 6530 correct 8655005 8658271 1 3267 CM091767.1 scf7180002754241 99.72 True CONTIG scf7180002754241 3389 correct 3056973 3060175 3182 1 CM091752.1 scf7180002754242 99.03 True CONTIG scf7180002754242 3529 correct 3126438 3128650 2529 320 CM091752.1 scf7180002754243 99.19 True CONTIG scf7180002754243 2643 correct 8457065 8464318 7650 562 CM091767.1 scf7180002754244 96.54 True indel: indel (> 5bp) 8453979 8456888 10695 7838 CM091767.1 scf7180002754244 96.26 True indel: indel (> 5bp) 8450577 8453868 14087 10798 CM091767.1 scf7180002754244 96.55 True CONTIG scf7180002754244 14209 correct 15628410 15630006 1995 399 CM091757.1 scf7180002754245 99.5 True CONTIG scf7180002754245 2166 correct 18563806 18578286 85 14581 CM091751.1 scf7180002754246 97.66 True CONTIG scf7180002754246 14652 correct 11224376 11228696 1 4327 CM091765.1 scf7180002754247 98.92 True CONTIG scf7180002754247 4327 correct 8024837 8028538 3713 1 CM091767.1 scf7180002754248 98.92 True CONTIG scf7180002754248 3723 correct 542893 543683 791 1 CM091764.1 scf7180002754249 99.91 True relocation, inconsistency = 216195 324706 326697 2789 792 CM091764.1 scf7180002754249 98.7 True CONTIG scf7180002754249 2807 misassembled 15491417 15500859 9854 386 CM091752.1 scf7180002754250 99.64 True CONTIG scf7180002754250 9854 correct 16719538 16721464 1935 8 CM091752.1 scf7180002754251 97.3 True CONTIG scf7180002754251 1935 correct 3376140 3378681 1 2551 CM091752.1 scf7180002754252 99.14 True CONTIG scf7180002754252 2670 correct 6386158 6392298 21 6158 CM091760.1 scf7180002754253 99.74 True CONTIG scf7180002754253 6158 correct 532446 538715 1 6269 CM091764.1 scf7180002754254 99.84 True CONTIG scf7180002754254 6269 correct 9360064 9362247 2183 1 CM091752.1 scf7180002754255 98.95 True CONTIG scf7180002754255 2948 correct 15833092 15836968 3877 1 CM091757.1 scf7180002754256 99.92 True CONTIG scf7180002754256 3877 correct 15746055 15749489 1 3424 CM091757.1 scf7180002754257 99.39 True CONTIG scf7180002754257 3424 correct CONTIG scf7180002754258 7765 unaligned 8340645 8342422 1776 1 CM091767.1 scf7180002754259 98.99 True translocation 17387687 17390774 5423 2336 CM091751.1 scf7180002754259 100.0 True CONTIG scf7180002754259 6329 misassembled 10840643 10842176 1 1535 CM091765.1 scf7180002754260 99.8 True CONTIG scf7180002754260 4084 correct_unaligned 27884 30735 1334 4187 CM091760.1 scf7180002754261 99.93 True CONTIG scf7180002754261 4187 correct 9363423 9367118 1 3694 CM091752.1 scf7180002754262 99.78 True CONTIG scf7180002754262 5005 correct 11286592 11291676 5273 190 CM091765.1 scf7180002754263 99.8 True CONTIG scf7180002754263 5273 correct CONTIG scf7180002754264 4742 unaligned 11356724 11357247 558 37 CM091765.1 scf7180002754265 96.45 True translocation 8659891 8662983 3650 559 CM091767.1 scf7180002754265 99.84 True CONTIG scf7180002754265 3650 misassembled 15731928 15735242 1 3315 CM091757.1 scf7180002754266 99.79 True CONTIG scf7180002754266 3315 correct 8883844 8884994 1154 6 CM091767.1 scf7180002754267 98.7 True translocation 15503919 15506271 1285 3635 CM091757.1 scf7180002754267 99.45 True translocation 11401375 11402076 4337 3636 CM091765.1 scf7180002754267 100.0 True CONTIG scf7180002754267 4337 misassembled 2397896 2399848 1 1954 CM091760.1 scf7180002754268 99.74 True CONTIG scf7180002754268 2018 correct 1585013 1591169 6178 21 CM091764.1 scf7180002754269 99.85 True CONTIG scf7180002754269 6178 correct 8618425 8622940 1 4517 CM091767.1 scf7180002754270 99.91 True fake: scaffold gap size wrong estimation (local) 8623760 8624489 5485 6214 CM091767.1 scf7180002754270 100.0 True CONTIG scf7180002754270 6229 correct 9540159 9540791 1504 872 CM091767.1 scf7180002754271 100.0 True CONTIG scf7180002754271 1504 correct_unaligned CONTIG scf7180002754272 5704 unaligned 9528096 9533410 1 5333 CM091767.1 scf7180002754273 98.65 True CONTIG scf7180002754273 5333 correct 3076660 3083004 6345 1 CM091752.1 scf7180002754274 99.86 True CONTIG scf7180002754274 6345 correct 11236254 11241446 98 5290 CM091765.1 scf7180002754275 99.9 True CONTIG scf7180002754275 5290 correct 11290351 11295951 5758 160 CM091766.1 scf7180002754276 99.25 True CONTIG scf7180002754276 5758 correct 1771733 1772607 1 876 CM091764.1 scf7180002754277 99.77 True CONTIG scf7180002754277 876 correct 1559542 1564505 5339 387 CM091764.1 scf7180002754278 98.19 True CONTIG scf7180002754278 5638 correct 6354016 6355247 4134 2903 CM091768.1 scf7180002754279 99.27 True unknown 48549 50145 5036 3434 CM091753.1 scf7180002754279 98.88 True unknown CONTIG scf7180002754279 5100 mis_unaligned 10565352 10567487 1 2136 CM091765.1 scf7180002754280 100.0 True CONTIG scf7180002754280 2136 correct 15880241 15880984 1 744 CM091757.1 scf7180002754281 98.52 True translocation 11170019 11172824 3568 745 CM091765.1 scf7180002754281 96.76 True relocation, inconsistency = 38141 11210966 11213152 3569 5755 CM091765.1 scf7180002754281 98.84 True CONTIG scf7180002754281 5755 misassembled 13152080 13155125 1 3047 CM091751.1 scf7180002754282 99.74 True indel: indel (> 5bp) 13155222 13156034 3106 3918 CM091751.1 scf7180002754282 100.0 True CONTIG scf7180002754282 3918 correct 1813603 1815091 6209 4713 CM091764.1 scf7180002754283 96.26 True CONTIG scf7180002754283 6209 correct_unaligned 16549693 16555296 5604 1 CM091753.1 scf7180002754284 99.5 True CONTIG scf7180002754284 5622 correct 1818345 1823383 1 5031 CM091764.1 scf7180002754285 99.6 True CONTIG scf7180002754285 5031 correct 8464843 8472320 7478 1 CM091767.1 scf7180002754286 99.95 True CONTIG scf7180002754286 7818 correct 2744905 2746096 2610 1426 CM091755.1 scf7180002754287 97.48 True CONTIG scf7180002754287 2610 correct_unaligned 6297045 6313525 16479 1 CM091767.1 scf7180002754288 99.55 True CONTIG scf7180002754288 16479 correct 3325078 3331855 1 6778 CM091759.1 scf7180002754289 99.96 True fake: scaffold gap size wrong estimation (local) 3332008 3336566 6904 11463 CM091759.1 scf7180002754289 99.76 True CONTIG scf7180002754289 11908 correct 15926070 15926792 1 723 CM091757.1 scf7180002754290 98.06 True local misassembly 15928247 15931521 1257 4531 CM091757.1 scf7180002754290 99.97 True indel: indel (<= 5bp) 15931523 15932804 4532 5813 CM091757.1 scf7180002754290 99.45 True fake: scaffold gap size wrong estimation (local) 15933242 15934956 6492 8189 CM091757.1 scf7180002754290 98.66 True CONTIG scf7180002754290 8189 correct 330758 352439 21680 1 CM091764.1 scf7180002754291 99.88 True CONTIG scf7180002754291 21680 correct 9185362 9187203 1844 1 CM091763.1 scf7180002754292 99.47 True relocation, inconsistency = 8424 9172111 9176937 6691 1845 CM091763.1 scf7180002754292 98.89 True CONTIG scf7180002754292 6701 misassembled 54530 57795 1 3265 CM091753.1 scf7180002754293 99.63 True CONTIG scf7180002754293 3265 correct 15446704 15450345 3674 40 CM091757.1 scf7180002754294 98.93 True CONTIG scf7180002754294 3674 correct 3345269 3351509 1 6231 CM091768.1 scf7180002754295 98.86 True CONTIG scf7180002754295 7210 correct 17432025 17439600 154 7730 CM091751.1 scf7180002754296 98.8 True CONTIG scf7180002754296 8079 correct CONTIG scf7180002754297 3797 unaligned 15764213 15772110 7936 42 CM091757.1 scf7180002754298 99.86 True CONTIG scf7180002754298 7936 correct 11280012 11285984 5976 1 CM091765.1 scf7180002754299 99.66 True indel: indel (<= 5bp) 11278629 11279811 7369 6181 CM091765.1 scf7180002754299 97.98 True CONTIG scf7180002754299 7380 correct 13299966 13304642 1 4551 CM091758.1 scf7180002754300 95.13 True CONTIG scf7180002754300 6321 correct 3207679 3212982 18 5319 CM091752.1 scf7180002754301 97.83 True CONTIG scf7180002754301 5319 correct 15934942 15946500 11565 10 CM091757.1 scf7180002754302 99.74 True CONTIG scf7180002754302 11565 correct 593165 604866 11764 64 CM091764.1 scf7180002754303 99.97 True CONTIG scf7180002754303 11791 correct 4073589 4078192 4604 1 CM091768.1 scf7180002754304 100.0 True fake: scaffold gap size wrong estimation (local) 4066885 4072008 10361 5245 CM091768.1 scf7180002754304 99.72 True local misassembly 4064860 4065583 11084 10362 CM091768.1 scf7180002754304 99.07 True CONTIG scf7180002754304 11084 correct 3909448 3914944 1 5500 CM091768.1 scf7180002754305 99.95 True CONTIG scf7180002754305 5500 correct 1405845 1416051 12205 2014 CM091761.1 scf7180002754306 99.59 True CONTIG scf7180002754306 12205 correct 1684582 1686574 1984 1 CM091764.1 scf7180002754307 98.85 True indel: indel (> 5bp) 1682857 1684432 3663 2112 CM091764.1 scf7180002754307 95.81 True translocation 15646730 15652012 3899 9193 CM091757.1 scf7180002754307 99.53 True CONTIG scf7180002754307 9193 misassembled 7524046 7528224 1 4180 CM091764.1 scf7180002754308 99.88 True CONTIG scf7180002754308 4180 correct 1686620 1688874 1 2256 CM091764.1 scf7180002754309 98.23 True CONTIG scf7180002754309 2358 correct 6290485 6295062 1 4577 CM091768.1 scf7180002754310 99.65 True indel: indel (<= 5bp) 6295314 6296717 4826 6229 CM091768.1 scf7180002754310 100.0 True CONTIG scf7180002754310 6229 correct CONTIG scf7180002754311 920 unaligned 4950017 4951587 1 1569 CM091768.1 scf7180002754312 99.43 True translocation, scaffold gap is present 2014711 2015211 2540 2040 CM091764.1 scf7180002754312 100.0 True CONTIG scf7180002754312 2540 misassembled 1601489 1605920 4448 1 CM091764.1 scf7180002754313 99.12 True CONTIG scf7180002754313 4924 correct 16017095 16019421 1 2327 CM091757.1 scf7180002754314 99.96 True translocation 4620353 4625785 7760 2328 CM091754.1 scf7180002754314 99.63 True CONTIG scf7180002754314 7760 misassembled 8473364 8477864 136 4591 CM091767.1 scf7180002754315 95.59 True CONTIG scf7180002754315 4591 correct 4760068 4761341 1 1274 CM091754.1 scf7180002754316 99.06 True CONTIG scf7180002754316 1285 correct CONTIG scf7180002754318 322 unaligned 1166407 1177090 96 10767 CM091752.1 scf7180002754319 98.25 True CONTIG scf7180002754319 10767 correct CONTIG scf7180002754321 473 unaligned 14585292 14586912 1620 1 CM091756.1 scf7180002754322 99.63 True CONTIG scf7180002754322 1655 correct 10195752 10199481 10826 14556 CM091765.1 scf7180002754323 99.95 True CONTIG scf7180002754323 14556 correct_unaligned 19501877 19511938 10062 1 CM091751.1 scf7180002754324 99.11 True CONTIG scf7180002754324 10080 correct CONTIG scf7180002754325 41099 unaligned 1789060 1794788 5769 1 CM091753.1 scf7180002754326 96.38 True CONTIG scf7180002754326 5787 correct 19536388 19538849 75 2536 CM091751.1 scf7180002754331 99.07 True local misassembly 19540800 19541944 4320 5472 CM091751.1 scf7180002754331 98.01 True CONTIG scf7180002754331 5485 correct 911502 919229 1 7753 CM091755.1 scf7180002754333 99.91 True translocation 3896280 3896896 8370 7754 CM091768.1 scf7180002754333 99.86 True CONTIG scf7180002754333 8370 misassembled 9886827 9889870 3045 1 CM091756.1 scf7180002754334 99.77 True CONTIG scf7180002754334 3045 correct CONTIG scf7180002754341 490 unaligned 4167188 4167725 1 538 CM091754.1 scf7180002754342 99.44 True CONTIG scf7180002754342 561 correct 10378802 10383524 4724 1 CM091765.1 scf7180002754344 99.96 True CONTIG scf7180002754344 4907 correct 104451 106354 2151 247 CM091764.1 scf7180002754347 98.8 True CONTIG scf7180002754347 2151 correct CONTIG scf7180002754348 714 unaligned 240720 256075 15391 1 CM091761.1 scf7180002754350 99.82 True CONTIG scf7180002754350 15391 correct 4127065 4136026 1 8955 CM091764.1 scf7180002754352 99.29 True CONTIG scf7180002754352 8955 correct 12732189 12740680 1 8510 CM091751.1 scf7180002754354 99.28 True fake: scaffold gap size wrong estimation (local) 12741126 12747342 9328 15532 CM091751.1 scf7180002754354 99.15 True CONTIG scf7180002754354 15540 correct 20141 29434 9336 1 CM091761.1 scf7180002754355 99.01 True CONTIG scf7180002754355 10331 correct 9035530 9036864 2051 717 CM091763.1 scf7180002754356 99.78 True local misassembly 9032710 9034846 4876 2740 CM091763.1 scf7180002754356 99.39 True indel: indel (<= 5bp) 9032043 9032708 5542 4877 CM091763.1 scf7180002754356 99.4 True indel: indel (<= 5bp) 9031141 9032020 6442 5563 CM091763.1 scf7180002754356 99.32 True fake: scaffold gap size wrong estimation (local) 9019374 9030674 19226 7905 CM091763.1 scf7180002754356 98.98 True CONTIG scf7180002754356 19270 correct 4426957 4427804 1 848 CM091754.1 scf7180002754357 100.0 True CONTIG scf7180002754357 848 correct 17691531 17733890 1 41992 CM091751.1 scf7180002754359 99.02 True CONTIG scf7180002754359 41992 correct 28408 31256 1 2845 CM091755.1 scf7180002754365 99.51 True CONTIG scf7180002754365 2845 correct 4225497 4229225 1 3728 CM091754.1 scf7180002754366 99.49 True CONTIG scf7180002754366 4108 correct 13737677 13746580 189 8914 CM091754.1 scf7180002754367 97.06 True fake: scaffold gap size wrong estimation (local) 13746647 13793441 12235 58934 CM091754.1 scf7180002754367 99.4 True indel: indel (> 5bp) 13793500 13803647 59013 69208 CM091754.1 scf7180002754367 98.6 True CONTIG scf7180002754367 125243 correct CONTIG scf7180002754369 447 unaligned 2934551 2935317 763 1 CM091752.1 scf7180002754371 98.96 True CONTIG scf7180002754371 774 correct CONTIG scf7180002754372 141921 unaligned 16894213 16898385 11882 7712 CM091755.1 scf7180002754373 99.84 True translocation 64714 75252 22363 11883 CM091753.1 scf7180002754373 98.83 True CONTIG scf7180002754373 22411 misassembled 404735 413422 1 8703 CM091752.1 scf7180002754374 98.73 True relocation, inconsistency = 208971 194546 195074 9921 9393 CM091752.1 scf7180002754374 99.24 True local misassembly 192002 193991 12466 10477 CM091752.1 scf7180002754374 99.1 True local misassembly 189130 189830 13917 13217 CM091752.1 scf7180002754374 99.71 True indel: indel (<= 5bp) 188522 189129 14526 13919 CM091752.1 scf7180002754374 99.51 True indel: indel (> 5bp) 187793 188498 15232 14527 CM091752.1 scf7180002754374 98.02 True local misassembly 184571 186411 18205 16372 CM091752.1 scf7180002754374 98.16 True CONTIG scf7180002754374 18245 misassembled CONTIG scf7180002754375 3082 unaligned 5399392 5402004 1 2649 CM091768.1 scf7180002754376 99.05 True CONTIG scf7180002754376 2900 correct CONTIG scf7180002754377 1172 unaligned 328887 336593 58 7768 CM091752.1 scf7180002754378 98.36 True local misassembly 336705 339517 8117 10927 CM091752.1 scf7180002754378 98.93 True fake: scaffold gap size wrong estimation (local) 340177 355954 11008 26461 CM091752.1 scf7180002754378 96.92 True indel: indel (> 5bp) 356033 389270 26527 59698 CM091752.1 scf7180002754378 98.87 True CONTIG scf7180002754378 59710 correct 13086940 13099273 821 12671 CM091757.1 scf7180002754379 95.38 True translocation 238728 239709 13653 12672 CM091761.1 scf7180002754379 98.4 True CONTIG scf7180002754379 14031 misassembled CONTIG scf7180002754380 4771 unaligned 3479632 3497567 127 18134 CM091768.1 scf7180002754381 98.54 True fake: scaffold gap size wrong estimation (local) 3498051 3503709 18435 24109 CM091768.1 scf7180002754381 97.63 True CONTIG scf7180002754381 25497 correct 11831564 11865989 1 34469 CM091758.1 scf7180002754382 99.8 True relocation, scaffold gap is present, inconsistency = -16973 11865993 11929077 51446 114579 CM091758.1 scf7180002754382 99.79 True translocation 1088304 1094348 120620 114580 CM091753.1 scf7180002754382 99.77 True CONTIG scf7180002754382 120644 misassembled 3599526 3617076 17587 97 CM091768.1 scf7180002754383 99.57 True CONTIG scf7180002754383 17587 correct 9375218 9378566 178 3527 CM091767.1 scf7180002754384 99.34 True translocation, scaffold gap is present 5071041 5073517 3548 6024 CM091768.1 scf7180002754384 99.92 True translocation 1498982 1500272 7315 6025 CM091764.1 scf7180002754384 99.0 True local misassembly 1501718 1502584 8202 7336 CM091764.1 scf7180002754384 100.0 True CONTIG scf7180002754384 9760 misassembled 461532 462337 1413 608 CM091752.1 scf7180002754385 99.88 True local misassembly 460332 461232 2314 1414 CM091752.1 scf7180002754385 99.22 True fake: scaffold gap size wrong estimation (local) 458965 459687 3345 2623 CM091752.1 scf7180002754385 99.72 True local misassembly 444150 457775 17310 4002 CM091752.1 scf7180002754385 96.68 True relocation, inconsistency = 46705 393766 397398 21031 17357 CM091752.1 scf7180002754385 98.57 True indel: indel (> 5bp) 392271 393694 22554 21129 CM091752.1 scf7180002754385 99.02 True CONTIG scf7180002754385 22688 misassembled 3403681 3407339 1 3653 CM091752.1 scf7180002754386 99.18 True translocation 5052148 5054410 3654 5910 CM091768.1 scf7180002754386 95.15 True CONTIG scf7180002754386 5910 misassembled 6787598 6798892 1 11284 CM091757.1 scf7180002754387 99.27 True indel: indel (> 5bp) 6798950 6810393 11354 22815 CM091757.1 scf7180002754387 99.29 True fake: scaffold gap size wrong estimation (extensive) 6810606 6829926 32623 51958 CM091757.1 scf7180002754387 99.26 True fake: scaffold gap size wrong estimation (local) 6829914 6862661 52626 85439 CM091757.1 scf7180002754387 99.0 True relocation, scaffold gap is present, inconsistency = -16901 6862688 6865878 102367 105571 CM091757.1 scf7180002754387 98.94 True fake: scaffold gap size wrong estimation (local) 6866287 6884650 106355 124743 CM091757.1 scf7180002754387 99.2 True indel: indel (> 5bp) 6884688 6892858 124847 133030 CM091757.1 scf7180002754387 98.95 True relocation, scaffold gap is present, inconsistency = -23528 6892856 7016344 156556 278441 CM091757.1 scf7180002754387 97.81 True relocation, scaffold gap is present, inconsistency = -66065 7016614 7037083 344776 365248 CM091757.1 scf7180002754387 99.3 True fake: scaffold gap size wrong estimation (local) 7037141 7055448 367183 385491 CM091757.1 scf7180002754387 99.37 True indel: indel (> 5bp) 7055561 7064910 385646 394998 CM091757.1 scf7180002754387 98.98 True indel: indel (> 5bp) 7064966 7065916 395047 396000 CM091757.1 scf7180002754387 99.37 True indel: indel (> 5bp) 7066040 7117433 396160 447670 CM091757.1 scf7180002754387 99.35 True CONTIG scf7180002754387 447670 misassembled 1958485 1959847 1420 59 CM091752.1 scf7180002754388 98.52 True fake: scaffold gap size wrong estimation (local) 1955978 1957367 3852 2463 CM091752.1 scf7180002754388 99.21 True fake: scaffold gap size wrong estimation (local) 1954337 1955342 5260 4255 CM091752.1 scf7180002754388 99.4 True indel: indel (<= 5bp) 1952079 1954336 7522 5265 CM091752.1 scf7180002754388 99.78 True indel: indel (<= 5bp) 1950987 1952078 8615 7524 CM091752.1 scf7180002754388 99.82 True local misassembly 1949135 1950066 10421 9490 CM091752.1 scf7180002754388 98.5 True indel: indel (<= 5bp) 1948166 1949134 11391 10423 CM091752.1 scf7180002754388 99.79 True fake: scaffold gap size wrong estimation (local) 1945627 1946503 17006 16130 CM091752.1 scf7180002754388 99.43 True indel: indel (<= 5bp) 1944371 1945597 18266 17040 CM091752.1 scf7180002754388 98.94 True local misassembly 1940531 1942303 20495 18723 CM091752.1 scf7180002754388 98.65 True fake: scaffold gap size wrong estimation (local) 1939437 1940138 21599 20898 CM091752.1 scf7180002754388 99.57 True indel: indel (<= 5bp) 1937711 1939436 23326 21601 CM091752.1 scf7180002754388 99.71 True local misassembly 1935730 1936789 25074 24015 CM091752.1 scf7180002754388 99.72 True local misassembly 1933599 1935002 27213 25810 CM091752.1 scf7180002754388 99.29 True local misassembly 1880782 1932150 78414 27877 CM091752.1 scf7180002754388 97.07 True fake: scaffold gap size wrong estimation (local) 1852698 1880667 106582 78523 CM091752.1 scf7180002754388 99.15 True local misassembly 1849756 1850305 108075 107526 CM091752.1 scf7180002754388 98.91 True indel: indel (<= 5bp) 1848845 1849444 108988 108389 CM091752.1 scf7180002754388 99.33 True local misassembly 1846551 1847986 110749 109314 CM091752.1 scf7180002754388 99.3 True fake: scaffold gap size wrong estimation (local) 1845901 1846550 111433 110784 CM091752.1 scf7180002754388 99.54 True fake: scaffold gap size wrong estimation (local) 1838301 1843947 118226 112564 CM091752.1 scf7180002754388 98.94 True fake: scaffold gap size wrong estimation (local) 1828317 1838280 133251 123517 CM091752.1 scf7180002754388 96.22 True CONTIG scf7180002754388 133251 correct 11242944 11253360 10466 1 CM091765.1 scf7180002754389 97.61 True CONTIG scf7180002754389 11351 correct CONTIG scf7180002754390 1695 unaligned 13156650 13223492 3 66824 CM091753.1 scf7180002754391 99.47 True fake: scaffold gap size wrong estimation (local) 13223584 13317598 66906 160860 CM091753.1 scf7180002754391 99.09 True inversion, scaffold gap is present 13317785 13331388 174422 161046 CM091753.1 scf7180002754391 97.79 True translocation, scaffold gap is present 3215573 3216881 176622 177924 CM091768.1 scf7180002754391 96.97 True local misassembly 3217002 3240302 178248 200789 CM091768.1 scf7180002754391 95.4 True inversion, scaffold gap is present 3242669 3276969 234850 200810 CM091768.1 scf7180002754391 97.9 True relocation, scaffold gap is present, inconsistency = -34806 3240183 3241899 272142 270426 CM091768.1 scf7180002754391 98.49 True CONTIG scf7180002754391 272142 misassembled 12911357 12944027 32717 1 CM091751.1 scf7180002754392 99.35 True CONTIG scf7180002754392 32732 correct 4077459 4101471 24038 1 CM091759.1 scf7180002754393 99.15 True CONTIG scf7180002754393 24038 correct 17120598 17248103 1 127020 CM091751.1 scf7180002754394 99.54 True CONTIG scf7180002754394 127020 correct 15313103 15385256 88 71867 CM091757.1 scf7180002754395 98.99 True fake: scaffold gap size wrong estimation (local) 15385403 15390697 72004 77299 CM091757.1 scf7180002754395 99.64 True fake: not a misassembly (possible transposable element) 1703145 1705975 77300 80128 CM091755.1 scf7180002754395 99.66 True fake: not a misassembly (possible transposable element) 15390607 15398700 80151 88242 CM091757.1 scf7180002754395 99.96 True translocation, scaffold gap is present 1705977 1706624 88270 88917 CM091755.1 scf7180002754395 99.85 True indel: indel (<= 5bp) 1706626 1707666 88918 89958 CM091755.1 scf7180002754395 100.0 True indel: indel (<= 5bp) 1707667 1710959 89960 93252 CM091755.1 scf7180002754395 99.64 True fake: scaffold gap size wrong estimation (local) 1710960 1711477 93394 93911 CM091755.1 scf7180002754395 100.0 True indel: indel (<= 5bp) 1711479 1715153 93912 97586 CM091755.1 scf7180002754395 99.95 True relocation, scaffold gap is present, inconsistency = -18193 1715154 1721088 115780 121714 CM091755.1 scf7180002754395 99.85 True fake: scaffold gap size wrong estimation (local) 1721336 1722424 122104 123192 CM091755.1 scf7180002754395 100.0 True fake: scaffold gap size wrong estimation (local) 1722425 1723267 123324 124166 CM091755.1 scf7180002754395 100.0 True indel: indel (<= 5bp) 1723268 1728844 124168 129744 CM091755.1 scf7180002754395 100.0 True fake: scaffold gap size wrong estimation (local) 1728845 1734933 129825 135913 CM091755.1 scf7180002754395 99.95 True indel: indel (<= 5bp) 1735230 1737158 136211 138139 CM091755.1 scf7180002754395 100.0 True indel: indel (<= 5bp) 1737161 1738623 138140 139602 CM091755.1 scf7180002754395 99.93 True fake: scaffold gap size wrong estimation (extensive) 1738624 1740004 149205 150585 CM091755.1 scf7180002754395 100.0 True indel: indel (<= 5bp) 1740005 1741661 150587 152243 CM091755.1 scf7180002754395 99.94 True indel: indel (<= 5bp) 1741875 1742910 152456 153491 CM091755.1 scf7180002754395 99.9 True indel: indel (<= 5bp) 1742912 1745062 153492 155642 CM091755.1 scf7180002754395 100.0 True indel: indel (<= 5bp) 1745063 1756266 155645 166848 CM091755.1 scf7180002754395 99.99 True indel: indel (<= 5bp) 1756268 1757013 166849 167594 CM091755.1 scf7180002754395 100.0 True fake: scaffold gap size wrong estimation (local) 1757014 1763214 167722 173922 CM091755.1 scf7180002754395 99.98 True indel: indel (<= 5bp) 1763216 1767381 173923 178088 CM091755.1 scf7180002754395 99.76 True local misassembly 1769091 1772010 178804 181723 CM091755.1 scf7180002754395 99.11 True indel: indel (<= 5bp) 1772012 1775398 181724 185110 CM091755.1 scf7180002754395 99.79 True local misassembly 1776286 1777752 185998 187464 CM091755.1 scf7180002754395 99.8 True indel: indel (<= 5bp) 1778164 1780161 187881 189878 CM091755.1 scf7180002754395 99.9 True indel: indel (<= 5bp) 1780163 1785508 189879 195224 CM091755.1 scf7180002754395 99.89 True indel: indel (<= 5bp) 1785724 1788125 195442 197843 CM091755.1 scf7180002754395 100.0 True indel: indel (<= 5bp) 1788126 1791979 197845 201698 CM091755.1 scf7180002754395 99.82 True fake: scaffold gap size wrong estimation (local) 1792260 1792890 202114 202744 CM091755.1 scf7180002754395 100.0 True fake: scaffold gap size wrong estimation (local) 1793136 1795307 203271 205442 CM091755.1 scf7180002754395 100.0 True local misassembly 1795837 1796524 205974 206661 CM091755.1 scf7180002754395 99.85 True local misassembly 1796697 1801445 206662 211410 CM091755.1 scf7180002754395 99.47 True local misassembly 1802195 1802914 212157 212876 CM091755.1 scf7180002754395 100.0 True indel: indel (<= 5bp) 1802915 1803613 212878 213576 CM091755.1 scf7180002754395 100.0 True fake: scaffold gap size wrong estimation (local) 1803847 1805606 213822 215581 CM091755.1 scf7180002754395 99.89 True indel: indel (<= 5bp) 1805898 1807439 215869 217410 CM091755.1 scf7180002754395 99.35 True indel: indel (<= 5bp) 1807440 1808222 217412 218194 CM091755.1 scf7180002754395 99.49 True fake: scaffold gap size wrong estimation (local) 1809433 1819065 219370 229148 CM091755.1 scf7180002754395 95.42 True fake: scaffold gap size wrong estimation (local) 1819393 1821779 229461 231847 CM091755.1 scf7180002754395 96.73 True local misassembly 1823765 1826120 233276 235631 CM091755.1 scf7180002754395 99.58 True fake: scaffold gap size wrong estimation (local) 1826223 1830363 235745 239950 CM091755.1 scf7180002754395 99.18 True CONTIG scf7180002754395 240176 misassembled 7500166 7541607 1 41457 CM091762.1 scf7180002754396 99.66 True relocation, inconsistency = 55692 7597300 7616086 41458 60428 CM091762.1 scf7180002754396 97.86 True local misassembly 7616672 7629554 61070 73959 CM091762.1 scf7180002754396 98.9 True translocation 1056966 1088263 104515 73960 CM091753.1 scf7180002754396 97.38 True fake: scaffold gap size wrong estimation (local) 1052858 1056848 108611 104628 CM091753.1 scf7180002754396 99.77 True CONTIG scf7180002754396 108726 misassembled 5247808 5252308 1 4501 CM091768.1 scf7180002754397 100.0 True fake: scaffold gap size wrong estimation (local) 5253434 5255329 5103 6998 CM091768.1 scf7180002754397 99.63 True indel: indel (<= 5bp) 5255330 5256762 7000 8432 CM091768.1 scf7180002754397 100.0 True fake: scaffold gap size wrong estimation (local) 5260757 5263393 12781 15417 CM091768.1 scf7180002754397 100.0 True CONTIG scf7180002754397 15417 correct 12781162 12821841 40763 1 CM091760.1 scf7180002754398 99.14 True CONTIG scf7180002754398 41226 correct 7119304 7122394 17 3111 CM091761.1 scf7180002754399 99.71 True fake: scaffold gap size wrong estimation (local) 7122477 7124661 3206 5386 CM091761.1 scf7180002754399 99.68 True fake: scaffold gap size wrong estimation (local) 7124811 7218416 5535 99192 CM091761.1 scf7180002754399 99.6 True fake: scaffold gap size wrong estimation (local) 7218807 7245760 99275 126782 CM091761.1 scf7180002754399 99.25 True CONTIG scf7180002754399 126782 correct 5952529 6103888 151403 276 CM091762.1 scf7180002754400 99.39 True CONTIG scf7180002754400 151403 correct 4769418 4771344 9880 11806 CM091754.1 scf7180002754401 99.9 True CONTIG scf7180002754401 11806 correct_unaligned 15552433 15554005 1 1580 CM091757.1 scf7180002754402 97.7 True translocation 8836460 8844596 9739 1581 CM091767.1 scf7180002754402 99.69 True CONTIG scf7180002754402 11406 misassembled 10388647 10398047 1 9419 CM091765.1 scf7180002754403 99.93 True translocation 16046598 16048292 9420 11078 CM091757.1 scf7180002754403 96.94 True translocation 11155255 11155842 11760 11173 CM091765.1 scf7180002754403 99.83 True CONTIG scf7180002754403 13024 misassembled 6824264 6878523 1 53958 CM091760.1 scf7180002754404 99.21 True relocation, scaffold gap is present, inconsistency = -45533 6879157 7015580 100125 236441 CM091760.1 scf7180002754404 99.53 True relocation, scaffold gap is present, inconsistency = -30001 7015883 7081190 266745 332063 CM091760.1 scf7180002754404 99.46 True relocation, scaffold gap is present, inconsistency = -65394 7052292 7052793 368559 369060 CM091760.1 scf7180002754404 99.75 True fake: scaffold gap size wrong estimation (local) 7081184 7114227 397473 430490 CM091760.1 scf7180002754404 99.26 True indel: indel (> 5bp) 7114296 7119376 430571 435661 CM091760.1 scf7180002754404 99.57 True relocation, scaffold gap is present, inconsistency = -37084 7119450 7133329 472819 486729 CM091760.1 scf7180002754404 99.66 True indel: indel (> 5bp) 7133385 7212336 486793 565865 CM091760.1 scf7180002754404 99.26 True fake: scaffold gap size wrong estimation (local) 7212542 7232202 568684 588386 CM091760.1 scf7180002754404 99.14 True relocation, scaffold gap is present, inconsistency = -19488 7232222 7446281 607894 822129 CM091760.1 scf7180002754404 99.23 True relocation, scaffold gap is present, inconsistency = -54327 7420489 7421126 850664 851337 CM091760.1 scf7180002754404 97.92 True fake: scaffold gap size wrong estimation (local) 7446672 7459311 876062 888321 CM091760.1 scf7180002754404 96.23 True relocation, scaffold gap is present, inconsistency = -11844 7459331 7463715 900185 904554 CM091760.1 scf7180002754404 98.54 True indel: indel (<= 5bp) 7463771 7543052 904611 983673 CM091760.1 scf7180002754404 98.57 True indel: indel (> 5bp) 7543271 7588941 983857 1029458 CM091760.1 scf7180002754404 98.75 True indel: indel (> 5bp) 7588977 7632324 1029484 1072859 CM091760.1 scf7180002754404 99.7 True CONTIG scf7180002754404 1072859 misassembled 13556276 13601915 20 45679 CM091755.1 scf7180002754405 99.23 True indel: indel (> 5bp) 13602077 13603343 45794 47061 CM091755.1 scf7180002754405 99.61 True relocation, scaffold gap is present, inconsistency = -28053 13603629 13646602 75400 118646 CM091755.1 scf7180002754405 99.12 True indel: indel (> 5bp) 13646699 13660681 118771 132753 CM091755.1 scf7180002754405 99.28 True indel: indel (> 5bp) 13660760 13662071 132817 134128 CM091755.1 scf7180002754405 99.77 True CONTIG scf7180002754405 134128 misassembled 13588391 13670940 1 82494 CM091753.1 scf7180002754406 99.21 True indel: indel (> 5bp) 13670997 13765975 82575 177464 CM091753.1 scf7180002754406 99.14 True CONTIG scf7180002754406 177464 correct 12497834 12561835 68534 1 CM091751.1 scf7180002754407 99.07 True relocation, scaffold gap is present, inconsistency = -13425 12469474 12497812 110350 81981 CM091751.1 scf7180002754407 99.07 True fake: scaffold gap size wrong estimation (local) 12449338 12469461 131285 111183 CM091751.1 scf7180002754407 99.27 True CONTIG scf7180002754407 131285 misassembled CONTIG scf7180002754408 60306 unaligned 9045741 9106343 60586 1 CM091754.1 scf7180002754409 99.14 True fake: scaffold gap size wrong estimation (local) 9028031 9045352 77974 60655 CM091754.1 scf7180002754409 99.34 True relocation, scaffold gap is present, inconsistency = -10328 9002928 9027868 113132 88465 CM091754.1 scf7180002754409 98.05 True fake: scaffold gap size wrong estimation (local) 8924085 9002375 194894 113321 CM091754.1 scf7180002754409 98.72 True fake: scaffold gap size wrong estimation (local) 8814491 8924047 310743 201015 CM091754.1 scf7180002754409 99.39 True fake: scaffold gap size wrong estimation (local) 8722309 8814382 402688 310843 CM091754.1 scf7180002754409 99.56 True CONTIG scf7180002754409 402688 misassembled 8257095 8283493 1 26070 CM091755.1 scf7180002754410 97.92 True fake: scaffold gap size wrong estimation (local) 8283502 8297421 29262 42956 CM091755.1 scf7180002754410 97.86 True fake: scaffold gap size wrong estimation (local) 8297456 8307315 48604 58502 CM091755.1 scf7180002754410 99.32 True fake: scaffold gap size wrong estimation (local) 8307373 8324695 63924 81266 CM091755.1 scf7180002754410 99.22 True indel: indel (> 5bp) 8324770 8350157 81333 106795 CM091755.1 scf7180002754410 99.04 True CONTIG scf7180002754410 106804 correct 6313640 6419876 1 102413 CM091763.1 scf7180002754411 95.79 True CONTIG scf7180002754411 102413 correct 14717795 14749541 31767 1 CM091755.1 scf7180002754412 99.59 True fake: scaffold gap size wrong estimation (local) 14715580 14716840 34023 32763 CM091755.1 scf7180002754412 99.84 True indel: indel (> 5bp) 14713870 14715347 35739 34262 CM091755.1 scf7180002754412 99.86 True indel: indel (<= 5bp) 14712589 14713869 37021 35741 CM091755.1 scf7180002754412 99.53 True indel: indel (<= 5bp) 14710966 14712588 38645 37023 CM091755.1 scf7180002754412 99.38 True indel: indel (<= 5bp) 14709943 14710965 39669 38647 CM091755.1 scf7180002754412 99.9 True indel: indel (<= 5bp) 14708471 14709942 41142 39671 CM091755.1 scf7180002754412 99.32 True indel: indel (> 5bp) 14707264 14708448 42342 41158 CM091755.1 scf7180002754412 99.32 True indel: indel (<= 5bp) 14706193 14706986 43412 42619 CM091755.1 scf7180002754412 96.6 True fake: scaffold gap size wrong estimation (local) 14704003 14704544 45650 45109 CM091755.1 scf7180002754412 98.71 True local misassembly 14700993 14702053 48492 47432 CM091755.1 scf7180002754412 97.55 True fake: scaffold gap size wrong estimation (local) 14697979 14698746 49950 49183 CM091755.1 scf7180002754412 99.35 True indel: indel (<= 5bp) 14696877 14697519 51048 50406 CM091755.1 scf7180002754412 99.22 True indel: indel (<= 5bp) 14694470 14696564 53454 51360 CM091755.1 scf7180002754412 99.86 True indel: indel (> 5bp) 14692697 14694150 55233 53780 CM091755.1 scf7180002754412 99.93 True indel: indel (<= 5bp) 14691669 14692646 56259 55282 CM091755.1 scf7180002754412 99.9 True indel: indel (<= 5bp) 14690054 14691647 57872 56279 CM091755.1 scf7180002754412 99.62 True indel: indel (<= 5bp) 14689190 14690053 58739 57876 CM091755.1 scf7180002754412 100.0 True fake: scaffold gap size wrong estimation (local) 14660451 14689140 89756 59863 CM091755.1 scf7180002754412 98.12 True fake: scaffold gap size wrong estimation (local) 14659126 14660388 91235 89972 CM091755.1 scf7180002754412 99.53 True CONTIG scf7180002754412 91235 correct 11498072 11499119 111 1158 CM091763.1 scf7180002754413 96.85 True fake: scaffold gap size wrong estimation (local) 11499287 11500014 1350 2077 CM091763.1 scf7180002754413 100.0 True fake: scaffold gap size wrong estimation (local) 11500269 11501120 2329 3180 CM091763.1 scf7180002754413 99.77 True local misassembly 11501775 11503121 3181 4527 CM091763.1 scf7180002754413 99.85 True fake: scaffold gap size wrong estimation (local) 11503764 11512277 5161 13711 CM091763.1 scf7180002754413 99.29 True fake: scaffold gap size wrong estimation (local) 11512369 11513403 13778 14812 CM091763.1 scf7180002754413 99.71 True fake: scaffold gap size wrong estimation (local) 11514088 11514903 15190 16005 CM091763.1 scf7180002754413 100.0 True fake: scaffold gap size wrong estimation (local) 11516619 11592923 18175 93507 CM091763.1 scf7180002754413 97.98 True fake: scaffold gap size wrong estimation (local) 11592919 11669074 95618 170410 CM091763.1 scf7180002754413 97.78 True relocation, scaffold gap is present, inconsistency = -19304 11669073 11698970 189713 219374 CM091763.1 scf7180002754413 98.8 True fake: scaffold gap size wrong estimation (local) 11699835 11735551 221877 257203 CM091763.1 scf7180002754413 98.28 True fake: scaffold gap size wrong estimation (local) 11735856 11739913 257446 261502 CM091763.1 scf7180002754413 99.93 True fake: scaffold gap size wrong estimation (local) 11740004 11743239 262143 265368 CM091763.1 scf7180002754413 99.62 True fake: scaffold gap size wrong estimation (local) 11743408 11745007 265546 267145 CM091763.1 scf7180002754413 100.0 True CONTIG scf7180002754413 267145 misassembled 8609242 8665214 55936 1 CM091766.1 scf7180002754414 99.67 True fake: scaffold gap size wrong estimation (local) 8545700 8609135 119518 56026 CM091766.1 scf7180002754414 99.67 True indel: indel (<= 5bp) 8494486 8545591 170753 119628 CM091766.1 scf7180002754414 99.85 True fake: scaffold gap size wrong estimation (extensive) 8482836 8486469 174407 170774 CM091766.1 scf7180002754414 99.83 True CONTIG scf7180002754414 174407 correct 3167203 3169029 616 2436 CM091768.1 scf7180002754415 98.4 True indel: indel (<= 5bp) 3169104 3189819 2506 23218 CM091768.1 scf7180002754415 98.07 True local misassembly 3192153 3192749 24530 25126 CM091768.1 scf7180002754415 99.16 True indel: indel (<= 5bp) 3192751 3195198 25127 27574 CM091768.1 scf7180002754415 99.63 True local misassembly 3195652 3196699 27923 28970 CM091768.1 scf7180002754415 99.05 True indel: indel (<= 5bp) 3196704 3197940 28971 30207 CM091768.1 scf7180002754415 98.63 True fake: scaffold gap size wrong estimation (local) 3198041 3198594 30339 30892 CM091768.1 scf7180002754415 97.11 True indel: indel (> 5bp) 3198947 3199724 31233 32010 CM091768.1 scf7180002754415 99.1 True indel: indel (<= 5bp) 3199732 3200533 32019 32820 CM091768.1 scf7180002754415 99.5 True indel: indel (<= 5bp) 3200534 3201110 32825 33401 CM091768.1 scf7180002754415 98.61 True local misassembly 3201911 3202429 34189 34707 CM091768.1 scf7180002754415 99.42 True indel: indel (> 5bp) 3202439 3203516 34708 35785 CM091768.1 scf7180002754415 98.33 True fake: scaffold gap size wrong estimation (local) 3205601 3210345 38077 43190 CM091768.1 scf7180002754415 97.51 True local misassembly 3211364 3213907 43232 45776 CM091768.1 scf7180002754415 99.45 True CONTIG scf7180002754415 46189 correct CONTIG scf7180002754416 27290 unaligned 451851 605134 153324 1 CM091753.1 scf7180002754417 99.74 True CONTIG scf7180002754417 153324 correct 693529 712112 1 18584 CM091755.1 scf7180002754418 99.97 True indel: indel (> 5bp) 712150 746058 18631 52576 CM091755.1 scf7180002754418 99.93 True CONTIG scf7180002754418 52576 correct 30422 115807 1 85405 CM091766.1 scf7180002754419 99.78 True CONTIG scf7180002754419 85405 correct 11251483 11278531 1 27014 CM091766.1 scf7180002754420 99.8 True CONTIG scf7180002754420 27014 correct 2433670 2459709 52 26105 CM091753.1 scf7180002754421 99.78 True fake: scaffold gap size wrong estimation (extensive) 2461967 2463037 36256 37326 CM091753.1 scf7180002754421 99.44 True indel: indel (> 5bp) 2463054 2463695 37331 37972 CM091753.1 scf7180002754421 99.84 True fake: scaffold gap size wrong estimation (local) 2465833 2496600 41094 71726 CM091753.1 scf7180002754421 98.9 True fake: scaffold gap size wrong estimation (extensive) 2496526 2505274 80346 89095 CM091753.1 scf7180002754421 99.57 True fake: scaffold gap size wrong estimation (extensive) 2506821 2515534 99077 107802 CM091753.1 scf7180002754421 99.68 True CONTIG scf7180002754421 107802 correct 3181314 3182697 49 1432 CM091752.1 scf7180002754422 99.61 True fake: not a misassembly (possible transposable element) 15695743 15700308 5850 1433 CM091757.1 scf7180002754422 96.74 True fake: not a misassembly (possible transposable element) 3182740 3192236 5875 15415 CM091752.1 scf7180002754422 99.68 True fake: not a misassembly (possible transposable element) 2988709 2989508 15623 16422 CM091752.1 scf7180002754422 99.45 True fake: not a misassembly (possible transposable element) 3194394 3195680 16423 17709 CM091752.1 scf7180002754422 99.22 True fake: scaffold gap size wrong estimation (local) 3197201 3198450 19656 20905 CM091752.1 scf7180002754422 99.92 True indel: indel (> 5bp) 3198451 3199254 20918 21721 CM091752.1 scf7180002754422 96.52 True indel: indel (<= 5bp) 3199256 3199924 21722 22390 CM091752.1 scf7180002754422 98.51 True fake: scaffold gap size wrong estimation (local) 3199925 3202125 22531 24731 CM091752.1 scf7180002754422 98.41 True local misassembly 3202732 3203547 25327 26142 CM091752.1 scf7180002754422 98.04 True local misassembly 3203548 3204630 26557 27639 CM091752.1 scf7180002754422 97.97 True indel: indel (<= 5bp) 3204632 3205245 27640 28253 CM091752.1 scf7180002754422 96.74 True indel: indel (<= 5bp) 3205575 3207383 28582 30390 CM091752.1 scf7180002754422 99.23 True relocation, scaffold gap is present, inconsistency = -14443 3192961 3194360 30411 31811 CM091752.1 scf7180002754422 99.79 True CONTIG scf7180002754422 31811 misassembled 707149 716261 9113 1 CM091753.1 scf7180002754423 99.97 True indel: indel (> 5bp) 656406 707042 59840 9238 CM091753.1 scf7180002754423 99.9 True CONTIG scf7180002754423 59840 correct 6130734 6153497 810 23231 CM091760.1 scf7180002754424 97.99 True fake: scaffold gap size wrong estimation (local) 6155097 6199939 25020 69820 CM091760.1 scf7180002754424 98.79 True relocation, scaffold gap is present, inconsistency = -21252 6199960 6207811 91093 98946 CM091760.1 scf7180002754424 99.48 True indel: indel (> 5bp) 6207868 6209257 99010 100399 CM091760.1 scf7180002754424 99.86 True local misassembly 6215261 6222411 102966 110115 CM091760.1 scf7180002754424 99.33 True CONTIG scf7180002754424 110115 misassembled 10425095 10463453 38347 1 CM091765.1 scf7180002754425 99.82 True local misassembly 10418189 10424860 45361 38691 CM091765.1 scf7180002754425 99.91 True CONTIG scf7180002754425 45361 correct 14166266 14274753 108221 1 CM091760.1 scf7180002754426 99.36 True fake: scaffold gap size wrong estimation (local) 14158045 14166165 116460 108314 CM091760.1 scf7180002754426 98.68 True CONTIG scf7180002754426 116460 correct 405909 406600 285 976 CM091754.1 scf7180002754427 98.99 True local misassembly 407011 408484 977 2450 CM091754.1 scf7180002754427 99.73 True indel: indel (> 5bp) 408527 414740 2483 8975 CM091754.1 scf7180002754427 95.33 True translocation, scaffold gap is present 1833105 1833901 14465 15261 CM091764.1 scf7180002754427 99.87 True fake: scaffold gap size wrong estimation (local) 1836064 1836768 19799 20503 CM091764.1 scf7180002754427 100.0 True translocation, scaffold gap is present 414692 423877 20791 29998 CM091754.1 scf7180002754427 99.07 True translocation, scaffold gap is present 9107267 9108576 30037 31345 CM091767.1 scf7180002754427 99.92 True translocation, scaffold gap is present 1838089 1840276 31375 33567 CM091764.1 scf7180002754427 98.85 True fake: not a misassembly (possible transposable element) 423807 426663 33606 36455 CM091754.1 scf7180002754427 99.16 True fake: not a misassembly (possible transposable element) 1841009 1843213 36823 39043 CM091764.1 scf7180002754427 99.95 True translocation, scaffold gap is present 426915 427418 39379 39882 CM091754.1 scf7180002754427 99.4 True local misassembly 428568 429781 41035 42248 CM091754.1 scf7180002754427 99.51 True indel: indel (<= 5bp) 429920 432067 42389 44536 CM091754.1 scf7180002754427 99.53 True indel: indel (<= 5bp) 432070 433122 44537 45589 CM091754.1 scf7180002754427 100.0 True fake: scaffold gap size wrong estimation (local) 433601 434481 46156 47036 CM091754.1 scf7180002754427 99.55 True indel: indel (<= 5bp) 434482 435797 47038 48353 CM091754.1 scf7180002754427 99.47 True indel: indel (<= 5bp) 435984 437053 48536 49605 CM091754.1 scf7180002754427 99.07 True indel: indel (> 5bp) 437505 438730 50028 51253 CM091754.1 scf7180002754427 99.67 True indel: indel (<= 5bp) 439039 439584 51563 52108 CM091754.1 scf7180002754427 99.27 True indel: indel (<= 5bp) 439586 440803 52109 53326 CM091754.1 scf7180002754427 99.43 True local misassembly 441674 443564 53327 55217 CM091754.1 scf7180002754427 99.95 True local misassembly 444451 445976 56108 57633 CM091754.1 scf7180002754427 99.8 True indel: indel (> 5bp) 446225 446908 57875 58558 CM091754.1 scf7180002754427 99.85 True local misassembly 448283 500458 59945 111767 CM091754.1 scf7180002754427 97.81 True fake: scaffold gap size wrong estimation (local) 500828 508230 112243 119807 CM091754.1 scf7180002754427 96.16 True fake: scaffold gap size wrong estimation (local) 508319 509465 119898 121044 CM091754.1 scf7180002754427 99.83 True local misassembly 510125 510665 121705 122245 CM091754.1 scf7180002754427 99.08 True indel: indel (<= 5bp) 510666 511660 122247 123241 CM091754.1 scf7180002754427 99.6 True indel: indel (<= 5bp) 511661 512862 123243 124444 CM091754.1 scf7180002754427 99.58 True indel: indel (<= 5bp) 512864 513950 124445 125531 CM091754.1 scf7180002754427 99.82 True local misassembly 514536 516371 125652 127487 CM091754.1 scf7180002754427 99.67 True indel: indel (> 5bp) 516871 517496 127958 128583 CM091754.1 scf7180002754427 98.88 True indel: indel (> 5bp) 517523 518181 128616 129274 CM091754.1 scf7180002754427 100.0 True fake: scaffold gap size wrong estimation (local) 520649 521304 131132 131787 CM091754.1 scf7180002754427 100.0 True indel: indel (<= 5bp) 521700 522480 132186 132966 CM091754.1 scf7180002754427 99.1 True local misassembly 523959 525048 133762 134851 CM091754.1 scf7180002754427 99.45 True indel: indel (> 5bp) 525200 526243 134991 136034 CM091754.1 scf7180002754427 99.33 True indel: indel (<= 5bp) 526244 527051 136036 136843 CM091754.1 scf7180002754427 99.5 True local misassembly 527769 528602 137561 138394 CM091754.1 scf7180002754427 99.88 True indel: indel (<= 5bp) 528736 529888 138529 139681 CM091754.1 scf7180002754427 99.91 True indel: indel (<= 5bp) 529889 530489 139683 140283 CM091754.1 scf7180002754427 99.67 True indel: indel (<= 5bp) 530878 531424 140676 141222 CM091754.1 scf7180002754427 100.0 True indel: indel (<= 5bp) 531553 533130 141353 142930 CM091754.1 scf7180002754427 99.75 True indel: indel (<= 5bp) 533439 534047 143240 143848 CM091754.1 scf7180002754427 99.84 True local misassembly 534813 536269 144616 146072 CM091754.1 scf7180002754427 99.79 True indel: indel (<= 5bp) 536271 537075 146073 146877 CM091754.1 scf7180002754427 99.5 True fake: scaffold gap size wrong estimation (local) 539889 540896 148678 149685 CM091754.1 scf7180002754427 99.9 True indel: indel (<= 5bp) 541206 542317 149996 151107 CM091754.1 scf7180002754427 99.64 True indel: stretch of mismatches 542631 543569 151421 152359 CM091754.1 scf7180002754427 99.47 True indel: stretch of mismatches 543901 544692 152691 153482 CM091754.1 scf7180002754427 99.12 True local misassembly 545865 547667 154658 156460 CM091754.1 scf7180002754427 99.67 True indel: indel (<= 5bp) 547892 548519 156687 157314 CM091754.1 scf7180002754427 99.2 True indel: indel (<= 5bp) 548521 549404 157315 158198 CM091754.1 scf7180002754427 99.77 True fake: scaffold gap size wrong estimation (local) 550161 550673 158960 159472 CM091754.1 scf7180002754427 98.64 True indel: indel (<= 5bp) 550712 551397 159513 160198 CM091754.1 scf7180002754427 99.56 True indel: indel (<= 5bp) 551790 552646 160592 161448 CM091754.1 scf7180002754427 99.53 True CONTIG scf7180002754427 161775 misassembled 3071964 3134318 62323 1 CM091755.1 scf7180002754428 99.44 True CONTIG scf7180002754428 62883 correct 2839248 2843519 4622 341 CM091762.1 scf7180002754429 99.95 True fake: scaffold gap size wrong estimation (local) 2838555 2839114 5365 4769 CM091762.1 scf7180002754429 97.05 True fake: scaffold gap size wrong estimation (local) 2835873 2838281 7841 5433 CM091762.1 scf7180002754429 100.0 True fake: scaffold gap size wrong estimation (local) 2820174 2835808 24243 8351 CM091762.1 scf7180002754429 98.67 True relocation, scaffold gap is present, inconsistency = 1153947 3989793 4055713 24281 90011 CM091762.1 scf7180002754429 98.57 True translocation, scaffold gap is present 10991832 10997040 95326 90122 CM091766.1 scf7180002754429 99.71 True translocation, scaffold gap is present 2768361 2819061 146021 95347 CM091762.1 scf7180002754429 99.91 True translocation, scaffold gap is present 10978900 10991392 159235 146773 CM091766.1 scf7180002754429 99.2 True translocation, scaffold gap is present 4058532 4084762 159263 185483 CM091762.1 scf7180002754429 99.14 True translocation, scaffold gap is present 10952573 10978859 211786 185504 CM091766.1 scf7180002754429 99.71 True translocation, scaffold gap is present 4084771 4146932 211807 274019 CM091762.1 scf7180002754429 99.28 True CONTIG scf7180002754429 274019 misassembled 9446186 9527628 1 81428 CM091764.1 scf7180002754430 99.38 True fake: scaffold gap size wrong estimation (local) 9527520 9546168 82462 100839 CM091764.1 scf7180002754430 97.74 True indel: indel (> 5bp) 9546531 9551333 101212 106014 CM091764.1 scf7180002754430 99.36 True relocation, scaffold gap is present, inconsistency = -20678 9551335 9571589 126694 146970 CM091764.1 scf7180002754430 99.65 True fake: scaffold gap size wrong estimation (local) 9572108 9600995 147022 176158 CM091764.1 scf7180002754430 97.56 True fake: scaffold gap size wrong estimation (local) 9601007 9604399 178350 181780 CM091764.1 scf7180002754430 99.33 True fake: scaffold gap size wrong estimation (local) 9605243 9609640 182215 186616 CM091764.1 scf7180002754430 99.41 True fake: scaffold gap size wrong estimation (local) 9609885 9620096 186852 196886 CM091764.1 scf7180002754430 97.32 True fake: scaffold gap size wrong estimation (local) 9620180 9622186 196979 198985 CM091764.1 scf7180002754430 99.75 True fake: scaffold gap size wrong estimation (local) 9622240 9631109 199070 207949 CM091764.1 scf7180002754430 99.0 True fake: scaffold gap size wrong estimation (local) 9631257 9638740 208095 215573 CM091764.1 scf7180002754430 99.55 True fake: scaffold gap size wrong estimation (local) 9640005 9640680 216770 217445 CM091764.1 scf7180002754430 99.85 True fake: scaffold gap size wrong estimation (local) 9640681 9641221 217473 218013 CM091764.1 scf7180002754430 99.82 True local misassembly 9643098 9644536 218014 219452 CM091764.1 scf7180002754430 98.47 True indel: indel (> 5bp) 9644537 9647095 219461 222019 CM091764.1 scf7180002754430 99.18 True fake: scaffold gap size wrong estimation (local) 9647096 9648634 222041 223579 CM091764.1 scf7180002754430 99.81 True indel: stretch of mismatches 9648923 9652220 223868 227165 CM091764.1 scf7180002754430 99.91 True indel: indel (<= 5bp) 9652294 9653133 227238 228077 CM091764.1 scf7180002754430 99.05 True fake: scaffold gap size wrong estimation (local) 9653121 9671041 232852 250553 CM091764.1 scf7180002754430 98.21 True fake: scaffold gap size wrong estimation (local) 9671088 9680489 251674 260960 CM091764.1 scf7180002754430 98.19 True fake: scaffold gap size wrong estimation (local) 9680664 9686624 261093 266878 CM091764.1 scf7180002754430 96.14 True fake: scaffold gap size wrong estimation (local) 9688081 9692386 268956 273312 CM091764.1 scf7180002754430 99.2 True CONTIG scf7180002754430 273312 misassembled CONTIG scf7180002754431 142984 unaligned 17542174 17558092 15958 6 CM091751.1 scf7180002754432 99.29 True CONTIG scf7180002754432 15958 correct 1894348 1898248 3910 1 CM091751.1 scf7180002754433 98.98 True fake: scaffold gap size wrong estimation (local) 1886496 1892946 10815 4332 CM091751.1 scf7180002754433 98.52 True local misassembly 1885074 1885740 12026 11360 CM091751.1 scf7180002754433 98.95 True CONTIG scf7180002754433 13349 correct 10825907 10902762 375 76786 CM091754.1 scf7180002754434 98.94 True fake: scaffold gap size wrong estimation (local) 10902817 10907131 81930 86252 CM091754.1 scf7180002754434 99.47 True fake: scaffold gap size wrong estimation (local) 10907144 11021124 89361 203168 CM091754.1 scf7180002754434 99.38 True fake: scaffold gap size wrong estimation (local) 11021251 11100557 203326 282500 CM091754.1 scf7180002754434 99.51 True indel: indel (> 5bp) 11100599 11132182 282512 314268 CM091754.1 scf7180002754434 99.12 True fake: scaffold gap size wrong estimation (local) 11132285 11208595 314463 390553 CM091754.1 scf7180002754434 99.15 True indel: indel (> 5bp) 11208628 11270736 390593 452707 CM091754.1 scf7180002754434 99.49 True fake: scaffold gap size wrong estimation (local) 11289174 11455528 471373 637398 CM091754.1 scf7180002754434 98.93 True indel: indel (> 5bp) 11455582 11527826 637462 709788 CM091754.1 scf7180002754434 99.19 True fake: scaffold gap size wrong estimation (local) 11528101 11602713 710021 784844 CM091754.1 scf7180002754434 99.4 True local misassembly 11602766 11625667 784987 807911 CM091754.1 scf7180002754434 99.11 True local misassembly 11626085 11640660 808667 823235 CM091754.1 scf7180002754434 99.38 True translocation, scaffold gap is present 16235369 16239248 824152 828031 CM091757.1 scf7180002754434 99.48 True indel: indel (<= 5bp) 16239249 16239829 828033 828613 CM091757.1 scf7180002754434 100.0 True fake: scaffold gap size wrong estimation (local) 16240806 16241703 829047 829944 CM091757.1 scf7180002754434 97.66 True indel: indel (<= 5bp) 16241704 16244087 829950 832333 CM091757.1 scf7180002754434 99.37 True translocation, scaffold gap is present 11640571 11643386 832354 835169 CM091754.1 scf7180002754434 99.72 True indel: stretch of mismatches 11643479 11671761 835262 863540 CM091754.1 scf7180002754434 99.73 True local misassembly 11671886 11675284 863569 866969 CM091754.1 scf7180002754434 99.47 True indel: indel (> 5bp) 11675313 11684438 867075 876193 CM091754.1 scf7180002754434 99.69 True translocation, scaffold gap is present 16244032 16247958 876214 880245 CM091757.1 scf7180002754434 98.35 True translocation, scaffold gap is present 11684442 11687732 920096 923366 CM091754.1 scf7180002754434 98.76 True CONTIG scf7180002754434 923718 misassembled 4391413 4420248 1 28961 CM091767.1 scf7180002754435 98.7 True indel: indel (<= 5bp) 4420308 4424913 29017 33642 CM091767.1 scf7180002754435 99.17 True indel: indel (> 5bp) 4425058 4473127 33800 82121 CM091767.1 scf7180002754435 98.63 True CONTIG scf7180002754435 82121 correct 4999958 5033074 32474 1 CM091753.1 scf7180002754436 97.39 True fake: scaffold gap size wrong estimation (local) 4987118 4999780 50495 37840 CM091753.1 scf7180002754436 99.34 True relocation, scaffold gap is present, inconsistency = -10477 4972008 4986756 76112 61334 CM091753.1 scf7180002754436 98.93 True fake: scaffold gap size wrong estimation (local) 4966934 4971599 81910 77232 CM091753.1 scf7180002754436 99.1 True CONTIG scf7180002754436 81910 misassembled 3839225 3849202 1 9976 CM091768.1 scf7180002754437 99.87 True fake: scaffold gap size wrong estimation (local) 3852770 3858385 12568 18176 CM091768.1 scf7180002754437 99.77 True CONTIG scf7180002754437 18176 correct 15332727 15452698 119922 1 CM091756.1 scf7180002754438 99.64 True relocation, scaffold gap is present, inconsistency = -52591 15359675 15360197 145565 145043 CM091756.1 scf7180002754438 100.0 True fake: not a misassembly (possible transposable element) 903512 908142 173062 168433 CM091755.1 scf7180002754438 99.96 True fake: not a misassembly (possible transposable element) 15297396 15330749 206420 173063 CM091756.1 scf7180002754438 99.61 True relocation, scaffold gap is present, inconsistency = -37964 15276918 15297331 264279 244449 CM091756.1 scf7180002754438 96.65 True indel: indel (> 5bp) 15237787 15276853 315037 264319 CM091756.1 scf7180002754438 96.29 True indel: stretch of mismatches 15200548 15237703 352299 315121 CM091756.1 scf7180002754438 99.68 True fake: not a misassembly (possible transposable element) 10990940 10991724 354181 353397 CM091752.1 scf7180002754438 99.87 True fake: not a misassembly (possible transposable element) 15024738 15197567 527549 355146 CM091756.1 scf7180002754438 98.46 True CONTIG scf7180002754438 527549 misassembled 5432507 5570490 1 138015 CM091764.1 scf7180002754439 99.46 True CONTIG scf7180002754439 138015 correct 1110007 1120140 10138 1 CM091756.1 scf7180002754440 99.66 True fake: scaffold gap size wrong estimation (local) 1041697 1109959 82407 14523 CM091756.1 scf7180002754440 98.82 True relocation, scaffold gap is present, inconsistency = -54692 1045865 1046445 132931 132351 CM091756.1 scf7180002754440 99.78 True fake: scaffold gap size wrong estimation (local) 983515 1041686 194679 137142 CM091756.1 scf7180002754440 98.2 True fake: scaffold gap size wrong estimation (local) 958451 969403 226054 215076 CM091756.1 scf7180002754440 99.25 True relocation, scaffold gap is present, inconsistency = -10327 930872 958434 264203 236398 CM091756.1 scf7180002754440 98.89 True fake: scaffold gap size wrong estimation (local) 929341 929967 264850 264224 CM091756.1 scf7180002754440 100.0 True indel: indel (> 5bp) 928662 929340 265537 264859 CM091756.1 scf7180002754440 100.0 True indel: indel (<= 5bp) 927996 928661 266204 265539 CM091756.1 scf7180002754440 99.85 True fake: scaffold gap size wrong estimation (local) 895544 926261 299403 268513 CM091756.1 scf7180002754440 99.1 True CONTIG scf7180002754440 299404 misassembled 4742006 4888621 146618 1 CM091761.1 scf7180002754441 99.61 True CONTIG scf7180002754441 146618 correct 10716667 10730331 13696 1 CM091764.1 scf7180002754442 99.7 True fake: scaffold gap size wrong estimation (local) 10667379 10716569 63060 13803 CM091764.1 scf7180002754442 99.46 True fake: scaffold gap size wrong estimation (local) 10659593 10667348 71481 64013 CM091764.1 scf7180002754442 95.48 True fake: scaffold gap size wrong estimation (local) 10629651 10659579 101696 71762 CM091764.1 scf7180002754442 99.28 True relocation, scaffold gap is present, inconsistency = -28309 10566749 10629624 192796 130032 CM091764.1 scf7180002754442 98.93 True fake: scaffold gap size wrong estimation (local) 10519329 10566350 240625 193705 CM091764.1 scf7180002754442 98.92 True fake: scaffold gap size wrong estimation (extensive) 10499044 10519253 269053 248848 CM091764.1 scf7180002754442 99.28 True fake: scaffold gap size wrong estimation (local) 10397285 10498867 369382 269904 CM091764.1 scf7180002754442 97.14 True indel: indel (<= 5bp) 10347146 10397249 419584 369417 CM091764.1 scf7180002754442 99.23 True indel: stretch of mismatches 10208458 10346963 558464 419767 CM091764.1 scf7180002754442 99.24 True fake: scaffold gap size wrong estimation (local) 10190000 10208471 581193 562688 CM091764.1 scf7180002754442 99.41 True indel: indel (> 5bp) 9965981 10189894 805419 581307 CM091764.1 scf7180002754442 99.49 True relocation, scaffold gap is present, inconsistency = -15840 9922307 9966086 864887 821154 CM091764.1 scf7180002754442 99.39 True relocation, scaffold gap is present, inconsistency = -38190 9875017 9922303 950397 903081 CM091764.1 scf7180002754442 99.48 True relocation, scaffold gap is present, inconsistency = -12389 9842261 9875011 995537 962792 CM091764.1 scf7180002754442 99.65 True relocation, scaffold gap is present, inconsistency = -32634 9804723 9841755 1064878 1028677 CM091764.1 scf7180002754442 97.07 True indel: stretch of mismatches 9798696 9804722 1070926 1064879 CM091764.1 scf7180002754442 99.14 True fake: scaffold gap size wrong estimation (extensive) 9797776 9798686 1079188 1078277 CM091764.1 scf7180002754442 99.78 True fake: scaffold gap size wrong estimation (local) 9760782 9786434 1115398 1090233 CM091764.1 scf7180002754442 97.43 True fake: scaffold gap size wrong estimation (local) 9741541 9760735 1138243 1119453 CM091764.1 scf7180002754442 96.97 True fake: scaffold gap size wrong estimation (local) 9711451 9740857 1167334 1138335 CM091764.1 scf7180002754442 96.88 True local misassembly 9712680 9713188 1168305 1167798 CM091764.1 scf7180002754442 99.41 True fake: scaffold gap size wrong estimation (local) 9700337 9710544 1179167 1169034 CM091764.1 scf7180002754442 98.34 True fake: scaffold gap size wrong estimation (extensive) 9699245 9700350 1189702 1188597 CM091764.1 scf7180002754442 99.82 True CONTIG scf7180002754442 1189702 misassembled 2171043 2213503 1 42434 CM091756.1 scf7180002754443 99.38 True fake: scaffold gap size wrong estimation (local) 2214419 2302968 44274 131896 CM091756.1 scf7180002754443 98.37 True relocation, scaffold gap is present, inconsistency = -16556 2303509 2306033 148993 151524 CM091756.1 scf7180002754443 99.29 True fake: scaffold gap size wrong estimation (local) 2306163 2315749 153047 162401 CM091756.1 scf7180002754443 95.72 True fake: scaffold gap size wrong estimation (local) 2315756 2317444 165167 166855 CM091756.1 scf7180002754443 99.88 True indel: indel (<= 5bp) 2317669 2318251 167083 167665 CM091756.1 scf7180002754443 98.8 True indel: indel (<= 5bp) 2318253 2318850 167666 168263 CM091756.1 scf7180002754443 99.83 True local misassembly 2319112 2320354 168264 169506 CM091756.1 scf7180002754443 98.23 True fake: scaffold gap size wrong estimation (local) 2320372 2395217 170578 245881 CM091756.1 scf7180002754443 98.93 True fake: scaffold gap size wrong estimation (local) 2395221 2416787 247511 269156 CM091756.1 scf7180002754443 99.04 True fake: scaffold gap size wrong estimation (local) 2417187 2463029 269302 315119 CM091756.1 scf7180002754443 98.91 True CONTIG scf7180002754443 315119 misassembled 5667509 5692524 1 25015 CM091768.1 scf7180002754444 99.95 True CONTIG scf7180002754444 25015 correct 9837983 9938965 3 101047 CM091766.1 scf7180002754445 99.51 True relocation, scaffold gap is present, inconsistency = -34720 9938957 9980663 135759 177487 CM091766.1 scf7180002754445 99.39 True fake: scaffold gap size wrong estimation (local) 9980763 10017832 177577 213931 CM091766.1 scf7180002754445 97.72 True relocation, scaffold gap is present, inconsistency = -35061 10017844 10026027 249004 257194 CM091766.1 scf7180002754445 99.39 True fake: scaffold gap size wrong estimation (local) 10026258 10079726 261640 315172 CM091766.1 scf7180002754445 99.38 True fake: scaffold gap size wrong estimation (local) 10079747 10126085 320237 366557 CM091766.1 scf7180002754445 99.39 True CONTIG scf7180002754445 366557 misassembled 13098158 13134252 36112 11 CM091758.1 scf7180002754446 99.88 True indel: indel (> 5bp) 13049828 13097974 95267 36286 CM091758.1 scf7180002754446 96.78 True relocation, scaffold gap is present, inconsistency = -29966 13045592 13049795 129469 125266 CM091758.1 scf7180002754446 99.98 True indel: indel (<= 5bp) 13044794 13045591 130268 129471 CM091758.1 scf7180002754446 100.0 True indel: indel (> 5bp) 13042068 13044793 133000 130275 CM091758.1 scf7180002754446 99.85 True indel: indel (<= 5bp) 13041567 13042067 133502 133002 CM091758.1 scf7180002754446 99.8 True local misassembly 13039581 13040144 134390 133827 CM091758.1 scf7180002754446 99.82 True indel: indel (<= 5bp) 13036840 13039316 137129 134653 CM091758.1 scf7180002754446 99.76 True CONTIG scf7180002754446 137129 misassembled 8614898 8640968 25844 206 CM091765.1 scf7180002754447 95.27 True indel: indel (<= 5bp) 8585331 8614836 55409 25908 CM091765.1 scf7180002754447 99.3 True indel: stretch of mismatches 8548902 8585224 91875 55516 CM091765.1 scf7180002754447 98.96 True CONTIG scf7180002754447 91875 correct 8815645 8827500 15689 3850 CM091766.1 scf7180002754448 99.75 True relocation, scaffold gap is present, inconsistency = -15976 8801114 8815650 46196 31660 CM091766.1 scf7180002754448 99.89 True fake: not a misassembly (possible transposable element) 14114433 14115569 48449 47313 CM091752.1 scf7180002754448 98.07 True fake: not a misassembly (possible transposable element) 8757646 8801100 94755 51278 CM091766.1 scf7180002754448 99.85 True relocation, scaffold gap is present, inconsistency = -12758 8726833 8757338 138322 107821 CM091766.1 scf7180002754448 99.77 True relocation, scaffold gap is present, inconsistency = -30809 8696365 8726697 199614 169267 CM091766.1 scf7180002754448 99.69 True fake: scaffold gap size wrong estimation (local) 8680464 8696344 219794 203903 CM091766.1 scf7180002754448 99.57 True relocation, scaffold gap is present, inconsistency = -15647 8665354 8680462 250588 235443 CM091766.1 scf7180002754448 99.7 True translocation 1464959 1503461 289095 250589 CM091751.1 scf7180002754448 99.03 True translocation 13464258 13512526 289096 338054 CM091756.1 scf7180002754448 99.02 True relocation, scaffold gap is present, inconsistency = -13682 13512527 13523122 351737 362334 CM091756.1 scf7180002754448 99.5 True fake: scaffold gap size wrong estimation (local) 13523710 13533785 366087 376164 CM091756.1 scf7180002754448 99.68 True fake: scaffold gap size wrong estimation (extensive) 13533796 13604684 383526 454421 CM091756.1 scf7180002754448 99.55 True fake: scaffold gap size wrong estimation (local) 13604808 13669658 454544 519399 CM091756.1 scf7180002754448 99.74 True CONTIG scf7180002754448 519399 misassembled 10357627 10634820 276319 1 CM091760.1 scf7180002754449 98.99 True translocation, scaffold gap is present 11265287 11307624 276359 318810 CM091758.1 scf7180002754449 99.49 True translocation, scaffold gap is present 10311803 10357609 364652 318831 CM091760.1 scf7180002754449 99.12 True translocation, scaffold gap is present 11307618 11332088 364703 389143 CM091758.1 scf7180002754449 99.78 True translocation, scaffold gap is present 10108701 10311629 591659 389170 CM091760.1 scf7180002754449 99.26 True indel: indel (> 5bp) 10107574 10108535 592775 591814 CM091760.1 scf7180002754449 99.69 True CONTIG scf7180002754449 592775 misassembled 18472086 18512993 40798 5 CM091751.1 scf7180002754450 98.63 True indel: indel (> 5bp) 18466565 18472029 46376 40864 CM091751.1 scf7180002754450 98.33 True fake: not a misassembly (possible transposable element) 16656824 16663487 53235 46565 CM091751.1 scf7180002754450 99.24 True fake: not a misassembly (possible transposable element) 18451947 18466108 67537 53398 CM091751.1 scf7180002754450 98.94 True relocation, scaffold gap is present, inconsistency = 1795076 16649538 16656850 74870 67558 CM091751.1 scf7180002754450 99.84 True relocation, scaffold gap is present, inconsistency = -2129829 18777251 18778998 76986 75239 CM091751.1 scf7180002754450 98.23 True indel: indel (<= 5bp) 18773995 18776977 80247 77255 CM091751.1 scf7180002754450 98.4 True fake: scaffold gap size wrong estimation (local) 18772119 18772626 81254 80747 CM091751.1 scf7180002754450 99.41 True indel: indel (> 5bp) 18770040 18771960 83251 81384 CM091751.1 scf7180002754450 95.49 True fake: not a misassembly (possible transposable element) 16645874 16649317 86718 83272 CM091751.1 scf7180002754450 99.85 True fake: not a misassembly (possible transposable element) 18765790 18768953 90012 86858 CM091751.1 scf7180002754450 98.64 True relocation, scaffold gap is present, inconsistency = 312290 18450169 18452048 93335 91464 CM091751.1 scf7180002754450 99.15 True fake: not a misassembly (possible transposable element) 16639740 16644117 97734 93356 CM091751.1 scf7180002754450 99.95 True fake: not a misassembly (possible transposable element) 18441193 18449720 106333 97761 CM091751.1 scf7180002754450 97.61 True indel: indel (> 5bp) 18438908 18441146 108580 106336 CM091751.1 scf7180002754450 97.09 True relocation, scaffold gap is present, inconsistency = -326353 18757635 18765239 116275 108602 CM091751.1 scf7180002754450 97.57 True relocation, scaffold gap is present, inconsistency = 2117775 16600697 16639839 155435 116296 CM091751.1 scf7180002754450 99.91 True relocation, scaffold gap is present, inconsistency = -1838295 18435506 18438971 158903 155456 CM091751.1 scf7180002754450 98.82 True indel: indel (> 5bp) 18429592 18435361 164817 159029 CM091751.1 scf7180002754450 99.03 True relocation, scaffold gap is present, inconsistency = -352591 18755583 18756362 191417 190638 CM091751.1 scf7180002754450 99.36 True indel: indel (> 5bp) 18754398 18755426 192596 191568 CM091751.1 scf7180002754450 98.93 True fake: scaffold gap size wrong estimation (local) 18751525 18752891 193998 192632 CM091751.1 scf7180002754450 99.05 True indel: indel (> 5bp) 18750717 18751383 194789 194123 CM091751.1 scf7180002754450 98.5 True relocation, scaffold gap is present, inconsistency = 2119214 16550595 16600280 275717 226012 CM091751.1 scf7180002754450 99.83 True indel: indel (> 5bp) 16524073 16550571 302278 275751 CM091751.1 scf7180002754450 99.62 True indel: indel (> 5bp) 16444142 16523819 382163 302485 CM091751.1 scf7180002754450 99.4 True fake: scaffold gap size wrong estimation (local) 16311910 16444002 513589 382310 CM091751.1 scf7180002754450 98.91 True fake: scaffold gap size wrong estimation (local) 16283013 16311210 541774 513738 CM091751.1 scf7180002754450 98.95 True relocation, scaffold gap is present, inconsistency = 2336751 18647982 18736859 541795 627692 CM091751.1 scf7180002754450 95.36 True indel: indel (> 5bp) 18736935 18748309 627760 639137 CM091751.1 scf7180002754450 98.24 True CONTIG scf7180002754450 639173 misassembled 9547801 9566997 19091 9 CM091755.1 scf7180002754451 96.04 True fake: not a misassembly (possible transposable element) 14690139 14690847 19092 19796 CM091758.1 scf7180002754451 98.8 True fake: not a misassembly (possible transposable element) 9521959 9547934 45830 19817 CM091755.1 scf7180002754451 98.79 True CONTIG scf7180002754451 45842 correct 15485207 15543365 57792 79 CM091754.1 scf7180002754452 98.62 True CONTIG scf7180002754452 57792 correct 8546318 8553837 7794 1 CM091767.1 scf7180002754453 96.84 True fake: scaffold gap size wrong estimation (local) 8544355 8546246 13563 11672 CM091767.1 scf7180002754453 99.89 True CONTIG scf7180002754453 13563 correct 11147927 11224884 76790 1 CM091760.1 scf7180002754454 99.0 True fake: scaffold gap size wrong estimation (extensive) 11142419 11147310 90790 85899 CM091760.1 scf7180002754454 99.78 True fake: scaffold gap size wrong estimation (local) 11073140 11142414 164942 95578 CM091760.1 scf7180002754454 99.47 True fake: scaffold gap size wrong estimation (local) 11048602 11073038 189461 165026 CM091760.1 scf7180002754454 99.46 True translocation, scaffold gap is present 14864518 14870314 195286 189482 CM091756.1 scf7180002754454 99.45 True fake: scaffold gap size wrong estimation (local) 14849958 14864514 215295 200730 CM091756.1 scf7180002754454 99.62 True translocation, scaffold gap is present 11043988 11048598 219977 215316 CM091760.1 scf7180002754454 98.86 True fake: scaffold gap size wrong estimation (local) 11035397 11043125 227424 220015 CM091760.1 scf7180002754454 95.41 True fake: not a misassembly (possible transposable element) 14847804 14849990 231312 229126 CM091756.1 scf7180002754454 99.91 True fake: not a misassembly (possible transposable element) 11033493 11035411 233252 231333 CM091760.1 scf7180002754454 99.74 True fake: not a misassembly (possible transposable element) 14843878 14847744 237145 233273 CM091756.1 scf7180002754454 99.66 True fake: not a misassembly (possible transposable element) 11030721 11033526 240850 238047 CM091760.1 scf7180002754454 99.79 True translocation, scaffold gap is present 14833771 14843823 250897 240871 CM091756.1 scf7180002754454 99.42 True translocation, scaffold gap is present 11014972 11030618 266834 251171 CM091760.1 scf7180002754454 99.39 True translocation, scaffold gap is present 14831495 14833791 278506 276196 CM091756.1 scf7180002754454 96.5 True fake: scaffold gap size wrong estimation (local) 14825616 14831476 285933 280072 CM091756.1 scf7180002754454 99.68 True fake: not a misassembly (possible transposable element) 11011665 11014202 289959 287421 CM091760.1 scf7180002754454 99.45 True fake: not a misassembly (possible transposable element) 14823077 14825444 294293 291926 CM091756.1 scf7180002754454 99.83 True fake: not a misassembly (possible transposable element) 11005998 11011679 300000 294314 CM091760.1 scf7180002754454 99.51 True fake: not a misassembly (possible transposable element) 14822142 14823076 301575 300641 CM091756.1 scf7180002754454 99.79 True indel: indel (<= 5bp) 14820983 14822136 302729 301576 CM091756.1 scf7180002754454 99.65 True indel: indel (> 5bp) 14819601 14820982 304125 302744 CM091756.1 scf7180002754454 99.57 True indel: indel (> 5bp) 14818608 14819594 305112 304126 CM091756.1 scf7180002754454 99.7 True translocation, scaffold gap is present 10988782 11005739 324570 307599 CM091760.1 scf7180002754454 99.67 True translocation, scaffold gap is present 14812442 14818645 330836 324629 CM091756.1 scf7180002754454 99.48 True fake: scaffold gap size wrong estimation (local) 14809063 14812263 340420 337220 CM091756.1 scf7180002754454 99.63 True local misassembly 14806133 14808026 343056 341163 CM091756.1 scf7180002754454 99.79 True indel: indel (<= 5bp) 14804962 14806132 344228 343058 CM091756.1 scf7180002754454 99.4 True indel: indel (<= 5bp) 14803837 14804961 345354 344230 CM091756.1 scf7180002754454 99.73 True indel: indel (<= 5bp) 14802978 14803596 346218 345600 CM091756.1 scf7180002754454 99.84 True indel: indel (<= 5bp) 14801675 14802655 347519 346539 CM091756.1 scf7180002754454 99.39 True indel: indel (> 5bp) 14800659 14801569 348528 347618 CM091756.1 scf7180002754454 99.34 True indel: indel (<= 5bp) 14799880 14800624 349309 348565 CM091756.1 scf7180002754454 99.87 True indel: indel (> 5bp) 14799160 14799873 350023 349310 CM091756.1 scf7180002754454 98.04 True fake: scaffold gap size wrong estimation (extensive) 14797439 14799159 358997 357277 CM091756.1 scf7180002754454 98.66 True indel: indel (<= 5bp) 14794855 14797084 361579 359350 CM091756.1 scf7180002754454 99.82 True indel: indel (<= 5bp) 14792740 14794854 363695 361581 CM091756.1 scf7180002754454 99.62 True translocation, scaffold gap is present 10973132 10985303 376103 363923 CM091760.1 scf7180002754454 99.45 True translocation, scaffold gap is present 14790544 14792521 380011 378060 CM091756.1 scf7180002754454 97.88 True fake: scaffold gap size wrong estimation (local) 14767985 14790512 404008 381477 CM091756.1 scf7180002754454 99.45 True translocation, scaffold gap is present 10970991 10973097 408033 405924 CM091760.1 scf7180002754454 99.29 True fake: scaffold gap size wrong estimation (local) 10940785 10970974 440118 409878 CM091760.1 scf7180002754454 99.08 True translocation, scaffold gap is present 14748941 14767966 467196 448142 CM091756.1 scf7180002754454 99.32 True translocation, scaffold gap is present 10938671 10940807 483053 480908 CM091760.1 scf7180002754454 99.3 True fake: scaffold gap size wrong estimation (local) 10933693 10938705 489963 484953 CM091760.1 scf7180002754454 99.62 True indel: indel (> 5bp) 10930806 10933667 492873 490011 CM091760.1 scf7180002754454 99.76 True fake: scaffold gap size wrong estimation (local) 10895913 10930771 533308 498533 CM091760.1 scf7180002754454 98.82 True relocation, scaffold gap is present, inconsistency = -13428 10824492 10895894 618049 546755 CM091760.1 scf7180002754454 99.08 True fake: scaffold gap size wrong estimation (local) 10661261 10824101 783626 620693 CM091760.1 scf7180002754454 99.28 True indel: indel (> 5bp) 10660486 10661165 784393 783714 CM091760.1 scf7180002754454 99.12 True CONTIG scf7180002754454 784393 misassembled 15677506 15687214 9717 1 CM091753.1 scf7180002754455 99.31 True fake: scaffold gap size wrong estimation (local) 15673279 15677387 16720 12602 CM091753.1 scf7180002754455 99.34 True fake: scaffold gap size wrong estimation (local) 15664663 15673274 29348 20735 CM091753.1 scf7180002754455 99.62 True fake: scaffold gap size wrong estimation (local) 15660491 15664520 33939 29915 CM091753.1 scf7180002754455 99.21 True fake: scaffold gap size wrong estimation (local) 15609771 15660447 85624 34900 CM091753.1 scf7180002754455 99.39 True translocation, scaffold gap is present 6807074 6824215 114950 97795 CM091760.1 scf7180002754455 99.31 True fake: scaffold gap size wrong estimation (extensive) 6782370 6807057 148084 123640 CM091760.1 scf7180002754455 98.46 True relocation, scaffold gap is present, inconsistency = -12055 6778234 6782320 164282 160189 CM091760.1 scf7180002754455 98.61 True fake: scaffold gap size wrong estimation (local) 6739534 6778037 204987 166525 CM091760.1 scf7180002754455 99.11 True translocation 2835290 2865623 235318 204988 CM091764.1 scf7180002754455 99.6 True indel: indel (<= 5bp) 2828089 2835212 242524 235400 CM091764.1 scf7180002754455 99.75 True fake: scaffold gap size wrong estimation (local) 2776496 2827949 294197 242667 CM091764.1 scf7180002754455 99.69 True fake: scaffold gap size wrong estimation (extensive) 2767885 2776341 312208 303756 CM091764.1 scf7180002754455 99.81 True fake: scaffold gap size wrong estimation (extensive) 2757413 2767804 331105 320721 CM091764.1 scf7180002754455 99.72 True local misassembly 2692545 2756670 395834 331678 CM091764.1 scf7180002754455 99.61 True fake: scaffold gap size wrong estimation (local) 2690823 2692400 397561 395984 CM091764.1 scf7180002754455 99.94 True local misassembly 2688215 2690247 400161 398129 CM091764.1 scf7180002754455 100.0 True indel: indel (<= 5bp) 2687070 2688214 401308 400164 CM091764.1 scf7180002754455 99.91 True indel: indel (<= 5bp) 2686083 2686883 402297 401497 CM091764.1 scf7180002754455 99.88 True indel: indel (> 5bp) 2685067 2685882 403298 402483 CM091764.1 scf7180002754455 99.75 True indel: indel (<= 5bp) 2684194 2685065 404170 403299 CM091764.1 scf7180002754455 99.89 True indel: indel (<= 5bp) 2683052 2684192 405311 404171 CM091764.1 scf7180002754455 100.0 True indel: indel (<= 5bp) 2681500 2683051 406867 405316 CM091764.1 scf7180002754455 99.94 True indel: indel (<= 5bp) 2678357 2681498 410009 406868 CM091764.1 scf7180002754455 99.78 True local misassembly 2676071 2676706 411878 411243 CM091764.1 scf7180002754455 97.64 True fake: scaffold gap size wrong estimation (local) 2665024 2670348 418243 412919 CM091764.1 scf7180002754455 99.7 True fake: scaffold gap size wrong estimation (local) 2663665 2665023 419613 418255 CM091764.1 scf7180002754455 99.93 True indel: indel (> 5bp) 2662277 2663613 420950 419614 CM091764.1 scf7180002754455 99.7 True indel: indel (> 5bp) 2661038 2662276 422199 420961 CM091764.1 scf7180002754455 99.76 True indel: indel (<= 5bp) 2659075 2661031 424158 422202 CM091764.1 scf7180002754455 99.95 True indel: indel (> 5bp) 2657176 2659059 426042 424159 CM091764.1 scf7180002754455 99.89 True indel: indel (<= 5bp) 2655649 2657175 427570 426044 CM091764.1 scf7180002754455 99.8 True indel: indel (<= 5bp) 2655106 2655647 428112 427571 CM091764.1 scf7180002754455 100.0 True indel: indel (<= 5bp) 2641021 2655105 442198 428114 CM091764.1 scf7180002754455 99.94 True indel: indel (<= 5bp) 2636812 2640765 446403 442450 CM091764.1 scf7180002754455 99.9 True indel: indel (<= 5bp) 2635752 2636811 447464 446405 CM091764.1 scf7180002754455 100.0 True indel: indel (<= 5bp) 2634618 2635495 448600 447723 CM091764.1 scf7180002754455 99.89 True indel: indel (<= 5bp) 2633399 2634617 449820 448602 CM091764.1 scf7180002754455 99.92 True indel: indel (<= 5bp) 2631858 2633398 451363 449823 CM091764.1 scf7180002754455 99.87 True indel: indel (> 5bp) 2630162 2631632 453073 451603 CM091764.1 scf7180002754455 99.52 True indel: indel (<= 5bp) 2629628 2630160 453606 453074 CM091764.1 scf7180002754455 99.62 True indel: indel (<= 5bp) 2628090 2629626 455143 453607 CM091764.1 scf7180002754455 99.93 True indel: indel (<= 5bp) 2625955 2628089 457279 455145 CM091764.1 scf7180002754455 99.72 True indel: indel (<= 5bp) 2623053 2625954 460186 457285 CM091764.1 scf7180002754455 99.97 True indel: indel (<= 5bp) 2618994 2623051 464244 460187 CM091764.1 scf7180002754455 99.95 True indel: indel (<= 5bp) 2618008 2618993 465231 464246 CM091764.1 scf7180002754455 100.0 True indel: indel (<= 5bp) 2616486 2618007 466756 465235 CM091764.1 scf7180002754455 100.0 True local misassembly 2613243 2615490 470009 467762 CM091764.1 scf7180002754455 100.0 True indel: indel (<= 5bp) 2607353 2613242 475900 470011 CM091764.1 scf7180002754455 99.9 True indel: indel (> 5bp) 2605823 2607303 477445 475965 CM091764.1 scf7180002754455 98.45 True indel: indel (<= 5bp) 2603903 2605679 479362 477586 CM091764.1 scf7180002754455 99.89 True indel: indel (<= 5bp) 2602842 2603901 480422 479363 CM091764.1 scf7180002754455 99.91 True indel: indel (<= 5bp) 2599899 2602841 483369 480427 CM091764.1 scf7180002754455 100.0 True indel: indel (<= 5bp) 2598161 2599898 485108 483371 CM091764.1 scf7180002754455 99.88 True fake: scaffold gap size wrong estimation (local) 2597077 2598160 486210 485127 CM091764.1 scf7180002754455 100.0 True indel: indel (<= 5bp) 2594166 2597076 489123 486213 CM091764.1 scf7180002754455 99.97 True indel: indel (<= 5bp) 2592420 2594165 490870 489125 CM091764.1 scf7180002754455 100.0 True indel: indel (<= 5bp) 2587575 2592418 495714 490871 CM091764.1 scf7180002754455 99.9 True indel: indel (<= 5bp) 2586626 2587573 496662 495715 CM091764.1 scf7180002754455 99.79 True indel: indel (> 5bp) 2583022 2586619 500260 496663 CM091764.1 scf7180002754455 99.97 True indel: indel (> 5bp) 2547766 2582548 535538 500744 CM091764.1 scf7180002754455 99.77 True indel: stretch of mismatches 2521759 2547712 561553 535592 CM091764.1 scf7180002754455 99.74 True local misassembly 2503664 2520775 578665 561554 CM091764.1 scf7180002754455 99.92 True fake: scaffold gap size wrong estimation (local) 2483157 2503445 598691 578771 CM091764.1 scf7180002754455 97.95 True fake: scaffold gap size wrong estimation (local) 2471703 2482431 609733 599004 CM091764.1 scf7180002754455 99.97 True relocation, scaffold gap is present, inconsistency = -10244 2408285 2471435 683461 620245 CM091764.1 scf7180002754455 99.76 True fake: scaffold gap size wrong estimation (local) 2386482 2408214 704909 683562 CM091764.1 scf7180002754455 98.11 True CONTIG scf7180002754455 704909 misassembled 686736 774040 87274 1 CM091766.1 scf7180002754456 99.47 True fake: scaffold gap size wrong estimation (local) 665860 686644 108233 87357 CM091766.1 scf7180002754456 99.53 True relocation, scaffold gap is present, inconsistency = -12494 609118 665848 177537 120739 CM091766.1 scf7180002754456 99.63 True relocation, scaffold gap is present, inconsistency = -18553 589060 607901 215547 197307 CM091766.1 scf7180002754456 96.63 True indel: stretch of mismatches 522691 589059 281051 215548 CM091766.1 scf7180002754456 98.12 True indel: indel (> 5bp) 449013 522631 354800 281100 CM091766.1 scf7180002754456 99.81 True indel: indel (> 5bp) 338352 448770 464994 355031 CM091766.1 scf7180002754456 99.23 True fake: scaffold gap size wrong estimation (local) 266703 338309 542123 470472 CM091766.1 scf7180002754456 99.69 True fake: scaffold gap size wrong estimation (local) 235535 266529 578450 547478 CM091766.1 scf7180002754456 99.73 True CONTIG scf7180002754456 578450 misassembled 15481691 15483681 4561 6551 CM091751.1 scf7180002754457 99.9 True fake: scaffold gap size wrong estimation (local) 15484324 15517869 6572 40140 CM091751.1 scf7180002754457 99.86 True translocation 15033065 15095954 40141 103469 CM091757.1 scf7180002754457 99.38 True translocation, scaffold gap is present 15518373 15598574 103490 183769 CM091751.1 scf7180002754457 99.59 True translocation, scaffold gap is present 15095962 15121104 183790 208951 CM091757.1 scf7180002754457 99.89 True translocation, scaffold gap is present 15598589 15618552 208972 228927 CM091751.1 scf7180002754457 99.13 True translocation, scaffold gap is present 15121130 15140908 228948 248851 CM091757.1 scf7180002754457 99.3 True fake: scaffold gap size wrong estimation (local) 15142755 15144034 248992 250272 CM091757.1 scf7180002754457 99.92 True local misassembly 15140786 15142610 250307 252131 CM091757.1 scf7180002754457 100.0 True translocation, scaffold gap is present 15618587 15619975 252152 253540 CM091751.1 scf7180002754457 99.64 True indel: indel (<= 5bp) 15619976 15620979 253542 254545 CM091751.1 scf7180002754457 99.6 True indel: stretch of mismatches 15621090 15622409 254656 255975 CM091751.1 scf7180002754457 99.85 True indel: stretch of mismatches 15622693 15623202 256259 256768 CM091751.1 scf7180002754457 99.61 True indel: stretch of mismatches 15623405 15624449 256971 258015 CM091751.1 scf7180002754457 100.0 True indel: indel (> 5bp) 15624523 15629650 258083 263210 CM091751.1 scf7180002754457 99.49 True fake: scaffold gap size wrong estimation (local) 15631521 15632065 270626 271170 CM091751.1 scf7180002754457 99.82 True indel: indel (<= 5bp) 15632067 15632617 271171 271721 CM091751.1 scf7180002754457 100.0 True indel: indel (<= 5bp) 15632618 15633379 271723 272484 CM091751.1 scf7180002754457 99.87 True indel: indel (<= 5bp) 15633380 15633893 272486 272999 CM091751.1 scf7180002754457 99.03 True indel: indel (<= 5bp) 15633895 15635659 273000 274764 CM091751.1 scf7180002754457 99.66 True indel: indel (> 5bp) 15635689 15639369 274771 278451 CM091751.1 scf7180002754457 99.38 True indel: indel (<= 5bp) 15639370 15639929 278453 279012 CM091751.1 scf7180002754457 100.0 True indel: indel (> 5bp) 15640106 15641247 279182 280323 CM091751.1 scf7180002754457 99.91 True indel: stretch of mismatches 15641566 15642079 280642 281155 CM091751.1 scf7180002754457 99.42 True indel: indel (<= 5bp) 15642081 15643826 281156 282901 CM091751.1 scf7180002754457 99.43 True indel: indel (> 5bp) 15644125 15645153 283206 284234 CM091751.1 scf7180002754457 98.83 True indel: indel (<= 5bp) 15645154 15646526 284240 285612 CM091751.1 scf7180002754457 99.64 True indel: indel (<= 5bp) 15646527 15647142 285614 286229 CM091751.1 scf7180002754457 99.84 True indel: indel (<= 5bp) 15647614 15650181 286699 289266 CM091751.1 scf7180002754457 99.45 True indel: indel (> 5bp) 15650435 15652268 289552 291385 CM091751.1 scf7180002754457 99.73 True local misassembly 15652814 15654271 291935 293392 CM091751.1 scf7180002754457 98.56 True local misassembly 15654816 15655390 293911 294485 CM091751.1 scf7180002754457 99.48 True fake: scaffold gap size wrong estimation (local) 15655964 15657429 295076 296541 CM091751.1 scf7180002754457 99.52 True indel: indel (> 5bp) 15657773 15659444 296861 298532 CM091751.1 scf7180002754457 99.52 True indel: indel (<= 5bp) 15659447 15659951 298533 299037 CM091751.1 scf7180002754457 99.6 True indel: indel (<= 5bp) 15660069 15662330 299151 301412 CM091751.1 scf7180002754457 99.38 True indel: indel (<= 5bp) 15662331 15662872 301414 301955 CM091751.1 scf7180002754457 98.89 True local misassembly 15663887 15664448 302971 303532 CM091751.1 scf7180002754457 99.29 True indel: indel (<= 5bp) 15664549 15665470 303635 304556 CM091751.1 scf7180002754457 99.46 True indel: indel (<= 5bp) 15665478 15667224 304566 306312 CM091751.1 scf7180002754457 99.77 True local misassembly 15667857 15668363 306958 307464 CM091751.1 scf7180002754457 100.0 True indel: indel (> 5bp) 15668809 15669892 307918 309001 CM091751.1 scf7180002754457 99.63 True indel: indel (<= 5bp) 15669895 15671179 309002 310286 CM091751.1 scf7180002754457 99.46 True indel: indel (> 5bp) 15671528 15672779 310617 311868 CM091751.1 scf7180002754457 99.6 True indel: indel (> 5bp) 15673184 15674195 312265 313276 CM091751.1 scf7180002754457 99.41 True indel: indel (<= 5bp) 15674200 15674982 313277 314059 CM091751.1 scf7180002754457 99.23 True indel: indel (<= 5bp) 15674986 15675832 314060 314906 CM091751.1 scf7180002754457 99.53 True indel: indel (<= 5bp) 15675834 15676346 314907 315419 CM091751.1 scf7180002754457 98.64 True indel: indel (<= 5bp) 15676347 15677087 315422 316162 CM091751.1 scf7180002754457 99.6 True indel: indel (<= 5bp) 15677089 15678151 316163 317225 CM091751.1 scf7180002754457 99.44 True indel: indel (<= 5bp) 15678152 15678957 317227 318032 CM091751.1 scf7180002754457 99.26 True indel: stretch of mismatches 15679051 15681920 318126 320995 CM091751.1 scf7180002754457 99.65 True indel: indel (<= 5bp) 15682201 15683866 321279 322944 CM091751.1 scf7180002754457 99.7 True indel: indel (<= 5bp) 15683867 15685489 322946 324568 CM091751.1 scf7180002754457 99.57 True indel: indel (<= 5bp) 15685855 15686722 324930 325797 CM091751.1 scf7180002754457 99.54 True indel: stretch of mismatches 15686982 15688946 326057 328021 CM091751.1 scf7180002754457 99.8 True indel: indel (<= 5bp) 15688947 15690311 328023 329387 CM091751.1 scf7180002754457 99.71 True indel: indel (<= 5bp) 15690755 15691423 329832 330500 CM091751.1 scf7180002754457 99.85 True indel: indel (<= 5bp) 15691426 15693045 330501 332120 CM091751.1 scf7180002754457 99.81 True indel: indel (<= 5bp) 15693047 15694402 332121 333476 CM091751.1 scf7180002754457 99.56 True indel: indel (> 5bp) 15694515 15736685 333631 375796 CM091751.1 scf7180002754457 99.39 True fake: scaffold gap size wrong estimation (local) 15736678 15740892 379224 383447 CM091751.1 scf7180002754457 99.55 True fake: scaffold gap size wrong estimation (local) 15740850 15824581 385457 471747 CM091751.1 scf7180002754457 98.44 True CONTIG scf7180002754457 471748 misassembled 2826291 2828121 1 1843 CM091763.1 scf7180002754458 99.62 True fake: scaffold gap size wrong estimation (local) 2828654 2831588 2959 5888 CM091763.1 scf7180002754458 98.05 True fake: scaffold gap size wrong estimation (local) 2832107 2836250 6903 11003 CM091763.1 scf7180002754458 97.76 True indel: indel (> 5bp) 2836267 2861694 11031 36466 CM091763.1 scf7180002754458 99.02 True relocation, scaffold gap is present, inconsistency = -11956 2862360 2916516 49088 103261 CM091763.1 scf7180002754458 99.41 True relocation, scaffold gap is present, inconsistency = -53397 2917206 2928768 157348 168894 CM091763.1 scf7180002754458 99.33 True relocation, scaffold gap is present, inconsistency = -11018 2928774 2981304 179918 232470 CM091763.1 scf7180002754458 99.48 True local misassembly 2981761 2982422 232652 233313 CM091763.1 scf7180002754458 98.94 True fake: scaffold gap size wrong estimation (local) 2982999 3060437 233509 310768 CM091763.1 scf7180002754458 99.12 True indel: indel (> 5bp) 3060522 3181526 310804 431904 CM091763.1 scf7180002754458 99.48 True local misassembly 3182061 3198551 432623 449064 CM091763.1 scf7180002754458 99.01 True fake: scaffold gap size wrong estimation (local) 3198931 3237039 453777 491894 CM091763.1 scf7180002754458 99.57 True relocation, scaffold gap is present, inconsistency = -38015 3237159 3244152 530029 537039 CM091763.1 scf7180002754458 99.52 True fake: scaffold gap size wrong estimation (local) 3244324 3288027 537228 580962 CM091763.1 scf7180002754458 99.45 True indel: indel (<= 5bp) 3288092 3373415 581030 662691 CM091763.1 scf7180002754458 95.24 True fake: scaffold gap size wrong estimation (local) 3373724 3483099 662735 772086 CM091763.1 scf7180002754458 99.52 True local misassembly 3483848 3502341 772089 790583 CM091763.1 scf7180002754458 99.61 True relocation, scaffold gap is present, inconsistency = -29364 3502318 3508370 819924 825982 CM091763.1 scf7180002754458 99.59 True fake: scaffold gap size wrong estimation (local) 3508809 3511579 831731 834506 CM091763.1 scf7180002754458 99.46 True fake: scaffold gap size wrong estimation (local) 3511581 3605007 837036 930673 CM091763.1 scf7180002754458 99.45 True fake: scaffold gap size wrong estimation (local) 3605262 3648844 933240 976870 CM091763.1 scf7180002754458 99.41 True relocation, scaffold gap is present, inconsistency = -30266 3648726 3665450 1007018 1023769 CM091763.1 scf7180002754458 99.34 True relocation, scaffold gap is present, inconsistency = -16690 3665454 3719525 1040463 1094527 CM091763.1 scf7180002754458 99.38 True CONTIG scf7180002754458 1096585 misassembled 1503389 1524407 1 20995 CM091751.1 scf7180002754459 99.03 True fake: scaffold gap size wrong estimation (extensive) 1524758 1535170 28949 39357 CM091751.1 scf7180002754459 99.24 True relocation, scaffold gap is present, inconsistency = -10328 1535193 1537925 49708 52437 CM091751.1 scf7180002754459 98.69 True indel: indel (> 5bp) 1538027 1556126 52523 70576 CM091751.1 scf7180002754459 98.13 True fake: scaffold gap size wrong estimation (extensive) 1556169 1568360 80098 92298 CM091751.1 scf7180002754459 99.36 True indel: indel (> 5bp) 1568412 1584230 92385 108221 CM091751.1 scf7180002754459 99.19 True relocation, scaffold gap is present, inconsistency = -28471 1584245 1598705 136707 151209 CM091751.1 scf7180002754459 99.07 True relocation, inconsistency = 169469 1768175 1789059 172074 151210 CM091751.1 scf7180002754459 98.78 True local misassembly 1759610 1767439 179914 172078 CM091751.1 scf7180002754459 99.48 True CONTIG scf7180002754459 179914 misassembled 8559306 8560054 51 769 CM091752.1 scf7180002754460 95.86 True translocation 5840528 5910261 70694 916 CM091765.1 scf7180002754460 99.31 True fake: scaffold gap size wrong estimation (local) 5737442 5840395 173779 70812 CM091765.1 scf7180002754460 99.41 True indel: indel (> 5bp) 5715609 5737415 194977 173851 CM091765.1 scf7180002754460 96.35 True fake: scaffold gap size wrong estimation (extensive) 5687108 5715581 232158 203632 CM091765.1 scf7180002754460 98.98 True relocation, scaffold gap is present, inconsistency = -10481 5611688 5687089 318149 242658 CM091765.1 scf7180002754460 99.11 True CONTIG scf7180002754460 318164 misassembled 12292892 12312969 20169 408 CM091761.1 scf7180002754461 96.65 True fake: scaffold gap size wrong estimation (local) 12255506 12292905 61115 24084 CM091761.1 scf7180002754461 98.37 True relocation, scaffold gap is present, inconsistency = -16281 12081058 12255264 266610 77638 CM091761.1 scf7180002754461 98.18 True CONTIG scf7180002754461 266610 misassembled 7285609 7287016 13 1420 CM091763.1 scf7180002754462 99.29 True indel: indel (<= 5bp) 7287018 7287728 1421 2131 CM091763.1 scf7180002754462 99.16 True indel: stretch of mismatches 7288148 7289267 2551 3670 CM091763.1 scf7180002754462 99.73 True local misassembly 7290004 7291263 4420 5679 CM091763.1 scf7180002754462 99.76 True indel: indel (<= 5bp) 7291266 7292237 5680 6651 CM091763.1 scf7180002754462 100.0 True local misassembly 7293155 7296402 7559 10806 CM091763.1 scf7180002754462 99.78 True indel: indel (<= 5bp) 7296514 7301391 10916 15793 CM091763.1 scf7180002754462 99.86 True indel: indel (<= 5bp) 7301392 7302701 15796 17105 CM091763.1 scf7180002754462 99.85 True indel: indel (<= 5bp) 7302702 7305020 17108 19426 CM091763.1 scf7180002754462 99.87 True indel: indel (<= 5bp) 7305021 7312391 19428 26798 CM091763.1 scf7180002754462 99.85 True indel: indel (<= 5bp) 7312393 7314697 26799 29103 CM091763.1 scf7180002754462 99.78 True indel: indel (> 5bp) 7314735 7316879 29104 31248 CM091763.1 scf7180002754462 99.81 True indel: indel (<= 5bp) 7316882 7319329 31249 33696 CM091763.1 scf7180002754462 99.67 True indel: indel (<= 5bp) 7319331 7322445 33697 36811 CM091763.1 scf7180002754462 99.9 True local misassembly 7322691 7323624 36812 37745 CM091763.1 scf7180002754462 97.75 True indel: indel (<= 5bp) 7323625 7325717 37747 39839 CM091763.1 scf7180002754462 99.76 True fake: scaffold gap size wrong estimation (local) 7325718 7328160 39864 42306 CM091763.1 scf7180002754462 99.92 True indel: indel (<= 5bp) 7328161 7329287 42309 43435 CM091763.1 scf7180002754462 100.0 True local misassembly 7330046 7335700 44173 49827 CM091763.1 scf7180002754462 99.7 True indel: indel (<= 5bp) 7335855 7337166 49981 51292 CM091763.1 scf7180002754462 99.85 True fake: scaffold gap size wrong estimation (local) 7337468 7338123 51577 52232 CM091763.1 scf7180002754462 99.39 True indel: indel (<= 5bp) 7338184 7339882 52289 53987 CM091763.1 scf7180002754462 99.53 True fake: scaffold gap size wrong estimation (local) 7339883 7340859 54007 54983 CM091763.1 scf7180002754462 99.8 True fake: scaffold gap size wrong estimation (local) 7340860 7341625 54996 55761 CM091763.1 scf7180002754462 98.69 True fake: scaffold gap size wrong estimation (local) 7342120 7343271 56279 57430 CM091763.1 scf7180002754462 99.83 True indel: indel (<= 5bp) 7343273 7344489 57431 58647 CM091763.1 scf7180002754462 99.84 True indel: indel (> 5bp) 7344496 7352200 58648 66352 CM091763.1 scf7180002754462 99.61 True indel: indel (> 5bp) 7352360 7352884 66524 67048 CM091763.1 scf7180002754462 99.05 True indel: indel (<= 5bp) 7352885 7353593 67050 67758 CM091763.1 scf7180002754462 99.86 True indel: indel (> 5bp) 7353594 7354540 67765 68711 CM091763.1 scf7180002754462 99.68 True indel: indel (<= 5bp) 7354568 7357106 68737 71275 CM091763.1 scf7180002754462 99.92 True indel: indel (> 5bp) 7357107 7358836 71283 73012 CM091763.1 scf7180002754462 99.08 True indel: indel (<= 5bp) 7358839 7359342 73013 73516 CM091763.1 scf7180002754462 100.0 True indel: indel (<= 5bp) 7359345 7361121 73517 75293 CM091763.1 scf7180002754462 99.72 True fake: scaffold gap size wrong estimation (local) 7361227 7368134 75431 82338 CM091763.1 scf7180002754462 99.68 True indel: indel (<= 5bp) 7368135 7369586 82340 83791 CM091763.1 scf7180002754462 99.17 True indel: indel (> 5bp) 7369604 7371573 83792 85761 CM091763.1 scf7180002754462 98.07 True indel: indel (> 5bp) 7371590 7373494 85762 87666 CM091763.1 scf7180002754462 99.63 True indel: indel (> 5bp) 7373512 7375388 87692 89568 CM091763.1 scf7180002754462 99.89 True indel: indel (<= 5bp) 7375389 7375941 89573 90125 CM091763.1 scf7180002754462 100.0 True indel: indel (<= 5bp) 7375942 7376787 90127 90972 CM091763.1 scf7180002754462 99.41 True fake: scaffold gap size wrong estimation (local) 7377203 7378490 91416 92703 CM091763.1 scf7180002754462 99.3 True indel: indel (<= 5bp) 7378491 7379135 92705 93349 CM091763.1 scf7180002754462 100.0 True indel: indel (<= 5bp) 7379554 7380460 93766 94672 CM091763.1 scf7180002754462 99.67 True local misassembly 7380984 7381507 95226 95749 CM091763.1 scf7180002754462 99.81 True indel: indel (<= 5bp) 7381508 7382722 95751 96965 CM091763.1 scf7180002754462 99.42 True indel: indel (<= 5bp) 7383137 7384254 97385 98502 CM091763.1 scf7180002754462 99.73 True indel: indel (<= 5bp) 7384255 7389089 98507 103341 CM091763.1 scf7180002754462 99.75 True fake: scaffold gap size wrong estimation (local) 7389090 7390158 103362 104430 CM091763.1 scf7180002754462 99.63 True indel: indel (<= 5bp) 7390160 7390719 104431 104990 CM091763.1 scf7180002754462 100.0 True indel: stretch of mismatches 7390839 7393412 105110 107683 CM091763.1 scf7180002754462 99.69 True indel: indel (<= 5bp) 7393413 7394097 107685 108369 CM091763.1 scf7180002754462 99.56 True indel: indel (> 5bp) 7394116 7394729 108370 108983 CM091763.1 scf7180002754462 96.74 True indel: stretch of mismatches 7395002 7395997 109256 110251 CM091763.1 scf7180002754462 99.8 True indel: indel (<= 5bp) 7395999 7396529 110252 110782 CM091763.1 scf7180002754462 99.25 True indel: indel (> 5bp) 7396530 7398560 110849 112879 CM091763.1 scf7180002754462 99.61 True indel: indel (<= 5bp) 7398562 7399153 112880 113471 CM091763.1 scf7180002754462 99.16 True indel: indel (<= 5bp) 7399158 7401930 113472 116244 CM091763.1 scf7180002754462 99.64 True indel: indel (> 5bp) 7402061 7403513 116366 117818 CM091763.1 scf7180002754462 99.45 True indel: indel (<= 5bp) 7403515 7404117 117819 118421 CM091763.1 scf7180002754462 99.17 True indel: indel (<= 5bp) 7404119 7405679 118422 119982 CM091763.1 scf7180002754462 99.74 True indel: indel (<= 5bp) 7405681 7407078 119983 121380 CM091763.1 scf7180002754462 99.71 True indel: indel (<= 5bp) 7407079 7408170 121383 122474 CM091763.1 scf7180002754462 99.91 True indel: indel (<= 5bp) 7408172 7410886 122475 125189 CM091763.1 scf7180002754462 99.78 True indel: indel (<= 5bp) 7411280 7411805 125582 126107 CM091763.1 scf7180002754462 99.81 True fake: scaffold gap size wrong estimation (local) 7412781 7413390 126733 127342 CM091763.1 scf7180002754462 96.56 True indel: indel (<= 5bp) 7413391 7413940 127344 127893 CM091763.1 scf7180002754462 99.45 True indel: indel (<= 5bp) 7414210 7415695 128161 129646 CM091763.1 scf7180002754462 99.66 True indel: indel (<= 5bp) 7415696 7416367 129648 130319 CM091763.1 scf7180002754462 99.85 True indel: indel (> 5bp) 7416588 7418377 130523 132312 CM091763.1 scf7180002754462 99.89 True indel: indel (<= 5bp) 7418378 7418960 132314 132896 CM091763.1 scf7180002754462 99.83 True fake: scaffold gap size wrong estimation (extensive) 7418961 7422772 141776 145587 CM091763.1 scf7180002754462 99.76 True indel: indel (> 5bp) 7422840 7424044 145641 146845 CM091763.1 scf7180002754462 99.25 True indel: indel (<= 5bp) 7424045 7425473 146847 148275 CM091763.1 scf7180002754462 99.58 True indel: indel (<= 5bp) 7425698 7426257 148503 149062 CM091763.1 scf7180002754462 99.46 True indel: indel (<= 5bp) 7426258 7428391 149064 151197 CM091763.1 scf7180002754462 99.58 True indel: indel (> 5bp) 7428412 7429776 151198 152562 CM091763.1 scf7180002754462 99.41 True indel: indel (<= 5bp) 7429778 7431595 152563 154380 CM091763.1 scf7180002754462 99.45 True indel: indel (<= 5bp) 7431601 7433543 154381 156323 CM091763.1 scf7180002754462 99.79 True translocation, scaffold gap is present 1973792 1988629 171191 156344 CM091751.1 scf7180002754462 99.72 True translocation, scaffold gap is present 7433452 7449034 171235 186897 CM091763.1 scf7180002754462 99.3 True translocation, scaffold gap is present 1959003 1973715 201676 186918 CM091751.1 scf7180002754462 98.98 True fake: scaffold gap size wrong estimation (local) 1952356 1955918 206504 202940 CM091751.1 scf7180002754462 98.75 True fake: not a misassembly (possible transposable element) 13867293 13868303 207518 206506 CM091754.1 scf7180002754462 98.03 True fake: not a misassembly (possible transposable element) 1932694 1952339 227065 207523 CM091751.1 scf7180002754462 98.14 True fake: scaffold gap size wrong estimation (local) 1931148 1932151 233139 232136 CM091751.1 scf7180002754462 99.7 True indel: indel (<= 5bp) 1929995 1930758 234295 233532 CM091751.1 scf7180002754462 99.08 True indel: indel (> 5bp) 1928987 1929994 235323 234316 CM091751.1 scf7180002754462 100.0 True indel: indel (<= 5bp) 1928296 1928986 236015 235325 CM091751.1 scf7180002754462 98.99 True indel: indel (<= 5bp) 1927518 1928108 236797 236207 CM091751.1 scf7180002754462 99.66 True indel: indel (> 5bp) 1926071 1927400 238255 236926 CM091751.1 scf7180002754462 99.85 True indel: indel (> 5bp) 1924893 1926056 239419 238256 CM091751.1 scf7180002754462 98.8 True indel: indel (<= 5bp) 1921977 1924892 242336 239421 CM091751.1 scf7180002754462 99.35 True local misassembly 1921138 1921976 243299 242461 CM091751.1 scf7180002754462 99.88 True indel: indel (<= 5bp) 1920190 1921137 244248 243301 CM091751.1 scf7180002754462 99.37 True fake: scaffold gap size wrong estimation (local) 1918384 1919762 246090 244712 CM091751.1 scf7180002754462 99.71 True fake: scaffold gap size wrong estimation (local) 1916849 1917744 247307 246412 CM091751.1 scf7180002754462 99.67 True indel: indel (> 5bp) 1915921 1916840 248227 247308 CM091751.1 scf7180002754462 99.24 True local misassembly 1911018 1915152 252536 248402 CM091751.1 scf7180002754462 99.27 True indel: indel (<= 5bp) 1909727 1911016 253826 252537 CM091751.1 scf7180002754462 99.92 True indel: indel (<= 5bp) 1907324 1909725 256228 253827 CM091751.1 scf7180002754462 99.46 True indel: indel (<= 5bp) 1904783 1906887 258767 256663 CM091751.1 scf7180002754462 99.38 True indel: indel (<= 5bp) 1904131 1904735 259418 258814 CM091751.1 scf7180002754462 99.83 True fake: scaffold gap size wrong estimation (local) 1900770 1904130 264541 261181 CM091751.1 scf7180002754462 98.45 True indel: indel (<= 5bp) 1899914 1900768 265396 264542 CM091751.1 scf7180002754462 99.53 True indel: indel (<= 5bp) 1898143 1899912 267166 265397 CM091751.1 scf7180002754462 99.44 True translocation, scaffold gap is present 11119068 11146478 267191 294634 CM091755.1 scf7180002754462 99.12 True local misassembly 11146845 11226880 294730 374440 CM091755.1 scf7180002754462 98.09 True CONTIG scf7180002754462 374440 misassembled 9753043 9843487 89985 152 CM091765.1 scf7180002754463 99.2 True fake: scaffold gap size wrong estimation (local) 9707596 9752933 135460 90088 CM091765.1 scf7180002754463 99.81 True fake: scaffold gap size wrong estimation (local) 9658897 9707207 183918 135680 CM091765.1 scf7180002754463 99.64 True fake: scaffold gap size wrong estimation (local) 9613880 9658807 228973 184021 CM091765.1 scf7180002754463 99.8 True relocation, scaffold gap is present, inconsistency = -30314 9566279 9613551 306924 259616 CM091765.1 scf7180002754463 99.86 True CONTIG scf7180002754463 307357 misassembled 12063096 12101796 39418 881 CM091762.1 scf7180002754464 99.2 True fake: scaffold gap size wrong estimation (extensive) 12050144 12063096 61805 48842 CM091762.1 scf7180002754464 99.78 True fake: scaffold gap size wrong estimation (local) 12036974 12049774 75199 62457 CM091762.1 scf7180002754464 99.45 True fake: scaffold gap size wrong estimation (local) 11931581 12036637 185813 81726 CM091762.1 scf7180002754464 98.66 True fake: scaffold gap size wrong estimation (local) 11831887 11931543 290172 190716 CM091762.1 scf7180002754464 99.21 True indel: indel (> 5bp) 11794253 11831846 327540 290200 CM091762.1 scf7180002754464 98.77 True relocation, scaffold gap is present, inconsistency = -24602 11534591 11794239 611817 352156 CM091762.1 scf7180002754464 99.47 True relocation, scaffold gap is present, inconsistency = -103268 11607712 11608193 641986 641483 CM091762.1 scf7180002754464 99.12 True translocation, scaffold gap is present 9559566 9563591 711509 707485 CM091759.1 scf7180002754464 99.88 True fake: scaffold gap size wrong estimation (local) 9555214 9559533 719968 715649 CM091759.1 scf7180002754464 99.86 True translocation, scaffold gap is present 11526359 11534693 728321 719989 CM091762.1 scf7180002754464 99.88 True translocation, scaffold gap is present 9541966 9555335 741709 728342 CM091759.1 scf7180002754464 99.36 True translocation, scaffold gap is present 11494704 11526467 781305 749520 CM091762.1 scf7180002754464 99.91 True translocation, scaffold gap is present 9513971 9541914 817209 784913 CM091759.1 scf7180002754464 97.62 True translocation, scaffold gap is present 11492633 11494702 835713 833675 CM091762.1 scf7180002754464 97.57 True translocation, scaffold gap is present 9496208 9513935 853469 835734 CM091759.1 scf7180002754464 99.64 True translocation, scaffold gap is present 11490298 11491757 854949 853490 CM091762.1 scf7180002754464 100.0 True fake: scaffold gap size wrong estimation (local) 11474276 11490296 873414 856216 CM091762.1 scf7180002754464 99.58 True translocation, scaffold gap is present 9486729 9496189 882907 873435 CM091759.1 scf7180002754464 99.68 True fake: scaffold gap size wrong estimation (local) 9445237 9486532 924311 883037 CM091759.1 scf7180002754464 99.33 True fake: scaffold gap size wrong estimation (local) 9396543 9445100 977845 929330 CM091759.1 scf7180002754464 99.33 True fake: scaffold gap size wrong estimation (local) 9391043 9396272 984859 979637 CM091759.1 scf7180002754464 99.54 True fake: scaffold gap size wrong estimation (local) 9256883 9390957 1118932 984944 CM091759.1 scf7180002754464 99.53 True indel: indel (> 5bp) 9229758 9256797 1145979 1119010 CM091759.1 scf7180002754464 99.3 True CONTIG scf7180002754464 1145979 misassembled 12949151 13086067 13 137012 CM091753.1 scf7180002754465 99.12 True indel: indel (> 5bp) 13086111 13090682 137037 141610 CM091753.1 scf7180002754465 99.39 True relocation, scaffold gap is present, inconsistency = -25461 13090700 13120523 167089 196920 CM091753.1 scf7180002754465 99.22 True relocation, scaffold gap is present, inconsistency = 460536 13581142 13588440 204316 197003 CM091753.1 scf7180002754465 99.58 True relocation, scaffold gap is present, inconsistency = 446519 13120467 13134592 204347 218046 CM091753.1 scf7180002754465 95.9 True relocation, scaffold gap is present, inconsistency = 437006 13571619 13581078 227627 218067 CM091753.1 scf7180002754465 98.12 True relocation, scaffold gap is present, inconsistency = 414882 13134472 13156697 227667 249910 CM091753.1 scf7180002754465 99.18 True relocation, scaffold gap is present, inconsistency = 361268 13517986 13571610 303402 249931 CM091753.1 scf7180002754465 98.79 True translocation 13310766 13313641 306277 303403 CM091760.1 scf7180002754465 98.85 True CONTIG scf7180002754465 306277 misassembled 2575590 2704157 128561 1 CM091758.1 scf7180002754466 99.44 True fake: scaffold gap size wrong estimation (local) 2537349 2574618 167465 130129 CM091758.1 scf7180002754466 99.33 True fake: scaffold gap size wrong estimation (local) 2417540 2537192 287054 167617 CM091758.1 scf7180002754466 99.09 True relocation, scaffold gap is present, inconsistency = -79025 2268001 2417527 515358 366092 CM091758.1 scf7180002754466 99.16 True fake: scaffold gap size wrong estimation (extensive) 2204667 2267996 587417 524150 CM091758.1 scf7180002754466 99.36 True relocation, scaffold gap is present, inconsistency = -20221 2201522 2204654 610765 607651 CM091758.1 scf7180002754466 98.95 True CONTIG scf7180002754466 610765 misassembled 405556 522316 1 116653 CM091757.1 scf7180002754467 99.27 True fake: scaffold gap size wrong estimation (local) 522710 699030 119791 296234 CM091757.1 scf7180002754467 99.54 True fake: scaffold gap size wrong estimation (local) 699194 895277 296417 492530 CM091757.1 scf7180002754467 99.39 True indel: indel (> 5bp) 895560 898377 492823 495636 CM091757.1 scf7180002754467 99.61 True relocation, scaffold gap is present, inconsistency = -15073 898383 969196 510715 581500 CM091757.1 scf7180002754467 99.33 True CONTIG scf7180002754467 583212 misassembled 2704802 2784338 1 79491 CM091758.1 scf7180002754468 99.38 True fake: scaffold gap size wrong estimation (local) 2784436 2833322 79595 128447 CM091758.1 scf7180002754468 99.51 True fake: scaffold gap size wrong estimation (extensive) 2833356 2867212 136208 170079 CM091758.1 scf7180002754468 99.52 True fake: scaffold gap size wrong estimation (local) 2867227 2930727 173987 237458 CM091758.1 scf7180002754468 99.5 True fake: scaffold gap size wrong estimation (local) 2930956 2962642 238471 270174 CM091758.1 scf7180002754468 99.51 True fake: scaffold gap size wrong estimation (local) 2962741 3112551 275460 425445 CM091758.1 scf7180002754468 99.29 True fake: scaffold gap size wrong estimation (local) 3112568 3117321 428153 432906 CM091758.1 scf7180002754468 99.68 True fake: scaffold gap size wrong estimation (local) 3117356 3130097 436210 448953 CM091758.1 scf7180002754468 99.69 True relocation, scaffold gap is present, inconsistency = -12642 3130113 3138427 461611 469930 CM091758.1 scf7180002754468 99.41 True fake: scaffold gap size wrong estimation (local) 3140288 3295093 471736 626068 CM091758.1 scf7180002754468 99.1 True fake: scaffold gap size wrong estimation (local) 3295121 3297745 630186 632810 CM091758.1 scf7180002754468 99.77 True indel: indel (<= 5bp) 3297880 3298514 632941 633575 CM091758.1 scf7180002754468 100.0 True indel: indel (> 5bp) 3298549 3300037 633638 635126 CM091758.1 scf7180002754468 99.93 True indel: indel (<= 5bp) 3300458 3302228 635545 637315 CM091758.1 scf7180002754468 100.0 True CONTIG scf7180002754468 639131 misassembled 4491236 4536254 45090 2 CM091756.1 scf7180002754469 99.27 True indel: indel (> 5bp) 4462969 4491071 73022 45245 CM091756.1 scf7180002754469 97.52 True fake: scaffold gap size wrong estimation (local) 4422525 4462894 113316 73076 CM091756.1 scf7180002754469 98.96 True fake: scaffold gap size wrong estimation (local) 4421108 4421829 115282 114561 CM091756.1 scf7180002754469 100.0 True fake: scaffold gap size wrong estimation (local) 4419152 4421107 117270 115315 CM091756.1 scf7180002754469 99.95 True indel: indel (<= 5bp) 4418071 4419151 118352 117272 CM091756.1 scf7180002754469 100.0 True indel: indel (<= 5bp) 4415089 4418069 121333 118353 CM091756.1 scf7180002754469 99.93 True indel: indel (<= 5bp) 4412096 4415087 124325 121334 CM091756.1 scf7180002754469 99.8 True indel: indel (<= 5bp) 4410663 4412094 125757 124326 CM091756.1 scf7180002754469 99.72 True indel: stretch of mismatches 4408751 4410433 127669 125987 CM091756.1 scf7180002754469 100.0 True indel: indel (<= 5bp) 4407716 4408750 128705 127671 CM091756.1 scf7180002754469 100.0 True indel: indel (<= 5bp) 4403769 4407714 132651 128706 CM091756.1 scf7180002754469 99.95 True indel: indel (<= 5bp) 4401577 4403768 134844 132653 CM091756.1 scf7180002754469 99.59 True indel: indel (<= 5bp) 4395358 4401564 141065 134859 CM091756.1 scf7180002754469 99.44 True indel: indel (<= 5bp) 4393302 4395357 143122 141067 CM091756.1 scf7180002754469 99.56 True local misassembly 4391193 4392726 145225 143692 CM091756.1 scf7180002754469 99.8 True indel: indel (<= 5bp) 4387772 4391192 148647 145227 CM091756.1 scf7180002754469 99.62 True indel: indel (<= 5bp) 4382759 4387769 153658 148648 CM091756.1 scf7180002754469 99.82 True indel: indel (<= 5bp) 4381549 4382758 154869 153660 CM091756.1 scf7180002754469 99.92 True fake: scaffold gap size wrong estimation (local) 4378538 4381357 158011 155192 CM091756.1 scf7180002754469 99.65 True indel: indel (<= 5bp) 4376269 4378536 160279 158012 CM091756.1 scf7180002754469 99.78 True indel: indel (> 5bp) 4375257 4376034 161297 160520 CM091756.1 scf7180002754469 99.74 True indel: indel (<= 5bp) 4372958 4375256 163597 161299 CM091756.1 scf7180002754469 99.78 True indel: indel (> 5bp) 4372089 4372957 164472 163604 CM091756.1 scf7180002754469 99.19 True indel: indel (<= 5bp) 4370839 4371998 165721 164562 CM091756.1 scf7180002754469 99.74 True indel: indel (> 5bp) 4369399 4370338 167150 166211 CM091756.1 scf7180002754469 99.57 True indel: indel (<= 5bp) 4367743 4369285 168808 167266 CM091756.1 scf7180002754469 99.68 True relocation, scaffold gap is present, inconsistency = -11464 4366789 4367568 181226 180447 CM091756.1 scf7180002754469 99.87 True indel: indel (<= 5bp) 4364377 4366369 183640 181648 CM091756.1 scf7180002754469 99.7 True indel: indel (> 5bp) 4361556 4364376 186495 183675 CM091756.1 scf7180002754469 99.61 True indel: indel (<= 5bp) 4359996 4361215 188051 186832 CM091756.1 scf7180002754469 98.77 True fake: not a misassembly (possible transposable element) 987970 991890 192020 188100 CM091764.1 scf7180002754469 99.97 True fake: not a misassembly (possible transposable element) 4358886 4359972 193296 192210 CM091756.1 scf7180002754469 99.72 True indel: indel (<= 5bp) 4355479 4358885 196706 193300 CM091756.1 scf7180002754469 99.68 True indel: indel (<= 5bp) 4354978 4355477 197206 196707 CM091756.1 scf7180002754469 99.4 True indel: indel (<= 5bp) 4353999 4354977 198186 197208 CM091756.1 scf7180002754469 99.8 True indel: indel (<= 5bp) 4352501 4353756 199685 198430 CM091756.1 scf7180002754469 99.68 True indel: indel (<= 5bp) 4351985 4352500 200202 199687 CM091756.1 scf7180002754469 99.42 True indel: indel (> 5bp) 4351416 4351984 200784 200216 CM091756.1 scf7180002754469 99.3 True indel: indel (<= 5bp) 4350277 4351142 201926 201061 CM091756.1 scf7180002754469 99.54 True fake: scaffold gap size wrong estimation (extensive) 4349116 4350276 210629 209469 CM091756.1 scf7180002754469 99.83 True indel: indel (> 5bp) 4346068 4348824 213670 210914 CM091756.1 scf7180002754469 99.71 True indel: indel (<= 5bp) 4343161 4346067 216578 213672 CM091756.1 scf7180002754469 99.28 True indel: indel (<= 5bp) 4342139 4343158 217598 216579 CM091756.1 scf7180002754469 97.06 True local misassembly 4341202 4341741 218138 217599 CM091756.1 scf7180002754469 99.63 True indel: indel (<= 5bp) 4340259 4341201 219082 218140 CM091756.1 scf7180002754469 99.68 True indel: indel (<= 5bp) 4338945 4340256 220394 219083 CM091756.1 scf7180002754469 99.77 True indel: indel (<= 5bp) 4337519 4338940 221816 220395 CM091756.1 scf7180002754469 99.58 True indel: indel (<= 5bp) 4336002 4337518 223334 221818 CM091756.1 scf7180002754469 99.67 True indel: indel (<= 5bp) 4335017 4335952 224315 223380 CM091756.1 scf7180002754469 99.68 True indel: indel (<= 5bp) 4333586 4334660 225743 224669 CM091756.1 scf7180002754469 99.63 True indel: indel (> 5bp) 4331808 4333585 227527 225750 CM091756.1 scf7180002754469 99.72 True indel: indel (> 5bp) 4331055 4331807 228286 227534 CM091756.1 scf7180002754469 99.2 True indel: indel (<= 5bp) 4328708 4331054 230634 228288 CM091756.1 scf7180002754469 99.49 True indel: indel (<= 5bp) 4327629 4328707 231714 230636 CM091756.1 scf7180002754469 99.26 True indel: indel (<= 5bp) 4324770 4327625 234570 231715 CM091756.1 scf7180002754469 98.84 True indel: indel (<= 5bp) 4323667 4324769 235675 234573 CM091756.1 scf7180002754469 99.37 True indel: indel (<= 5bp) 4322643 4323232 236700 236111 CM091756.1 scf7180002754469 99.83 True indel: indel (> 5bp) 4321303 4322596 238050 236757 CM091756.1 scf7180002754469 99.69 True indel: indel (<= 5bp) 4318416 4321301 240936 238051 CM091756.1 scf7180002754469 99.65 True indel: indel (<= 5bp) 4315879 4318415 243474 240938 CM091756.1 scf7180002754469 99.88 True indel: indel (<= 5bp) 4312767 4315878 246587 243476 CM091756.1 scf7180002754469 99.9 True indel: indel (<= 5bp) 4311122 4312764 248230 246588 CM091756.1 scf7180002754469 99.82 True indel: indel (<= 5bp) 4305871 4311120 253480 248231 CM091756.1 scf7180002754469 99.56 True indel: indel (<= 5bp) 4303486 4305870 255867 253483 CM091756.1 scf7180002754469 99.79 True indel: stretch of mismatches 4296927 4303283 262426 256070 CM091756.1 scf7180002754469 99.62 True indel: indel (<= 5bp) 4293524 4296919 265832 262437 CM091756.1 scf7180002754469 99.62 True indel: indel (> 5bp) 4290120 4293523 269243 265840 CM091756.1 scf7180002754469 99.68 True indel: indel (<= 5bp) 4287840 4290118 271522 269244 CM091756.1 scf7180002754469 99.78 True indel: indel (<= 5bp) 4287197 4287837 272163 271523 CM091756.1 scf7180002754469 99.22 True indel: indel (> 5bp) 4286102 4286881 273265 272486 CM091756.1 scf7180002754469 99.87 True indel: indel (<= 5bp) 4285237 4286098 274127 273266 CM091756.1 scf7180002754469 99.77 True indel: indel (<= 5bp) 4284571 4285232 274789 274128 CM091756.1 scf7180002754469 99.4 True indel: indel (<= 5bp) 4282094 4284570 277268 274792 CM091756.1 scf7180002754469 99.68 True translocation, scaffold gap is present 12267112 12277778 277346 288011 CM091757.1 scf7180002754469 99.77 True translocation, scaffold gap is present 4258432 4282075 311653 288056 CM091756.1 scf7180002754469 99.27 True local misassembly 4247677 4257796 322738 312614 CM091756.1 scf7180002754469 99.8 True translocation, scaffold gap is present 12277758 12303127 322802 348171 CM091757.1 scf7180002754469 99.76 True translocation, scaffold gap is present 4223513 4247664 372348 348192 CM091756.1 scf7180002754469 99.76 True translocation, scaffold gap is present 12303437 12331769 372369 400663 CM091757.1 scf7180002754469 99.45 True translocation, scaffold gap is present 4190038 4223474 434165 400684 CM091756.1 scf7180002754469 99.45 True fake: scaffold gap size wrong estimation (local) 4181536 4189753 442545 434307 CM091756.1 scf7180002754469 99.31 True fake: scaffold gap size wrong estimation (local) 4165042 4181536 463648 447153 CM091756.1 scf7180002754469 99.58 True indel: indel (> 5bp) 4075980 4165015 552726 463703 CM091756.1 scf7180002754469 99.31 True fake: scaffold gap size wrong estimation (local) 4074210 4075074 554510 553646 CM091756.1 scf7180002754469 99.65 True indel: indel (<= 5bp) 4073225 4074209 555496 554512 CM091756.1 scf7180002754469 97.26 True local misassembly 4071793 4072897 556601 555497 CM091756.1 scf7180002754469 99.37 True indel: indel (<= 5bp) 4070920 4071792 557475 556603 CM091756.1 scf7180002754469 99.66 True indel: stretch of mismatches 4070003 4070892 558392 557503 CM091756.1 scf7180002754469 99.66 True fake: scaffold gap size wrong estimation (local) 3730756 4069853 896152 558491 CM091756.1 scf7180002754469 98.78 True fake: scaffold gap size wrong estimation (local) 3706917 3730745 920103 896200 CM091756.1 scf7180002754469 99.13 True fake: scaffold gap size wrong estimation (local) 3683846 3706616 942853 920517 CM091756.1 scf7180002754469 97.38 True CONTIG scf7180002754469 942853 misassembled 6213712 6306161 260 92213 CM091755.1 scf7180002754470 98.85 True local misassembly 6321870 6407959 114225 200132 CM091755.1 scf7180002754470 99.34 True fake: scaffold gap size wrong estimation (local) 6408622 6518575 200262 310151 CM091755.1 scf7180002754470 99.26 True indel: indel (> 5bp) 6518681 6554473 310300 346124 CM091755.1 scf7180002754470 99.37 True fake: scaffold gap size wrong estimation (local) 6554477 6573609 353005 372171 CM091755.1 scf7180002754470 99.26 True indel: indel (> 5bp) 6573642 6633481 372198 431608 CM091755.1 scf7180002754470 97.81 True relocation, scaffold gap is present, inconsistency = 19596 6674129 6675323 452660 453818 CM091755.1 scf7180002754470 95.34 True relocation, scaffold gap is present, inconsistency = -41734 6633638 6657063 453867 477301 CM091755.1 scf7180002754470 99.64 True fake: scaffold gap size wrong estimation (local) 6659738 6663765 477589 481640 CM091755.1 scf7180002754470 99.43 True fake: scaffold gap size wrong estimation (local) 6665879 6667749 482272 484095 CM091755.1 scf7180002754470 97.11 True fake: not a misassembly (possible transposable element) 6657069 6659743 484116 486792 CM091755.1 scf7180002754470 99.66 True fake: not a misassembly (possible transposable element) 6675311 6675888 488868 489445 CM091755.1 scf7180002754470 99.13 True indel: indel (<= 5bp) 6676029 6677230 489585 490783 CM091755.1 scf7180002754470 98.92 True local misassembly 6678120 6681792 491638 495309 CM091755.1 scf7180002754470 99.59 True CONTIG scf7180002754470 495309 misassembled 5439754 5463316 23546 1 CM091755.1 scf7180002754471 99.52 True fake: scaffold gap size wrong estimation (local) 5302001 5439642 164961 23656 CM091755.1 scf7180002754471 96.93 True indel: indel (> 5bp) 5300901 5301762 166069 165208 CM091755.1 scf7180002754471 99.65 True indel: indel (<= 5bp) 5299669 5300478 167302 166493 CM091755.1 scf7180002754471 99.88 True local misassembly 5297636 5299058 169337 167915 CM091755.1 scf7180002754471 99.44 True indel: indel (<= 5bp) 5296706 5297634 170266 169338 CM091755.1 scf7180002754471 99.68 True indel: indel (<= 5bp) 5296091 5296704 170880 170267 CM091755.1 scf7180002754471 99.84 True indel: indel (<= 5bp) 5294599 5295638 172369 171330 CM091755.1 scf7180002754471 99.42 True fake: scaffold gap size wrong estimation (local) 5292649 5293583 173460 172526 CM091755.1 scf7180002754471 99.04 True fake: scaffold gap size wrong estimation (local) 5084978 5292364 381362 173769 CM091755.1 scf7180002754471 99.46 True translocation 2498750 2534180 381363 416918 CM091757.1 scf7180002754471 99.12 True CONTIG scf7180002754471 416918 misassembled 1341022 1393120 51543 1 CM091758.1 scf7180002754472 98.42 True fake: scaffold gap size wrong estimation (local) 1337953 1338866 55093 54180 CM091758.1 scf7180002754472 99.89 True indel: indel (<= 5bp) 1337393 1337952 55654 55095 CM091758.1 scf7180002754472 99.82 True indel: stretch of mismatches 1336491 1337084 56556 55963 CM091758.1 scf7180002754472 99.33 True fake: scaffold gap size wrong estimation (local) 1335309 1336357 58204 57156 CM091758.1 scf7180002754472 99.62 True indel: indel (<= 5bp) 1333954 1335308 59560 58206 CM091758.1 scf7180002754472 99.78 True indel: indel (<= 5bp) 1332809 1333951 60703 59561 CM091758.1 scf7180002754472 98.25 True local misassembly 1325529 1331877 67197 60849 CM091758.1 scf7180002754472 98.78 True local misassembly 1295807 1325172 96311 67285 CM091758.1 scf7180002754472 97.19 True local misassembly 1279326 1291112 108135 96312 CM091758.1 scf7180002754472 99.01 True fake: scaffold gap size wrong estimation (local) 1268841 1279214 118602 108231 CM091758.1 scf7180002754472 99.77 True translocation, scaffold gap is present 5245610 5258439 131453 118623 CM091754.1 scf7180002754472 99.97 True translocation, scaffold gap is present 1241975 1268852 169671 142792 CM091758.1 scf7180002754472 99.84 True translocation, scaffold gap is present 5242380 5245732 173044 169692 CM091754.1 scf7180002754472 100.0 True indel: indel (<= 5bp) 5239031 5242378 176392 173045 CM091754.1 scf7180002754472 100.0 True indel: indel (<= 5bp) 5231613 5238564 183812 176861 CM091754.1 scf7180002754472 99.97 True indel: indel (<= 5bp) 5228503 5231612 186923 183814 CM091754.1 scf7180002754472 100.0 True indel: indel (<= 5bp) 5226365 5228502 189062 186925 CM091754.1 scf7180002754472 100.0 True fake: scaffold gap size wrong estimation (local) 5224707 5226364 192335 190678 CM091754.1 scf7180002754472 100.0 True translocation, scaffold gap is present 1143421 1240698 289138 192356 CM091758.1 scf7180002754472 98.89 True relocation, inconsistency = 40176 1032933 1103244 359375 289139 CM091758.1 scf7180002754472 99.13 True fake: scaffold gap size wrong estimation (local) 1016762 1032508 375457 359668 CM091758.1 scf7180002754472 98.83 True fake: scaffold gap size wrong estimation (local) 947551 1015880 443817 375626 CM091758.1 scf7180002754472 98.8 True CONTIG scf7180002754472 443817 misassembled 7078949 7080142 1 1196 CM091756.1 scf7180002754473 99.58 True fake: scaffold gap size wrong estimation (local) 7080279 7087812 1320 8831 CM091756.1 scf7180002754473 98.15 True fake: scaffold gap size wrong estimation (local) 7087931 7111987 9154 33234 CM091756.1 scf7180002754473 99.13 True indel: indel (> 5bp) 7111995 7132957 33252 53931 CM091756.1 scf7180002754473 97.69 True fake: scaffold gap size wrong estimation (local) 7132945 7135328 56151 58533 CM091756.1 scf7180002754473 98.24 True indel: indel (> 5bp) 7135353 7139043 58589 62280 CM091756.1 scf7180002754473 98.56 True fake: scaffold gap size wrong estimation (local) 7139661 7293534 62559 216337 CM091756.1 scf7180002754473 98.76 True translocation, scaffold gap is present 5651364 5711585 216358 276394 CM091764.1 scf7180002754473 99.18 True fake: scaffold gap size wrong estimation (local) 5712213 5752457 276554 316755 CM091764.1 scf7180002754473 99.5 True translocation, scaffold gap is present 7293527 7507198 316787 530507 CM091756.1 scf7180002754473 99.12 True indel: indel (> 5bp) 7507271 7514005 530569 537310 CM091756.1 scf7180002754473 99.51 True local misassembly 7514776 7522416 537311 544951 CM091756.1 scf7180002754473 99.27 True CONTIG scf7180002754473 544951 misassembled 6546700 6547239 541 1 CM091759.1 scf7180002754474 98.89 True local misassembly 6526376 6545598 20913 1671 CM091759.1 scf7180002754474 98.54 True local misassembly 6481938 6524020 63940 21855 CM091759.1 scf7180002754474 98.96 True indel: indel (> 5bp) 6477623 6481866 68311 64033 CM091759.1 scf7180002754474 98.46 True local misassembly 6440856 6473229 100615 68312 CM091759.1 scf7180002754474 98.91 True fake: scaffold gap size wrong estimation (local) 6429588 6440744 112020 100716 CM091759.1 scf7180002754474 98.71 True fake: scaffold gap size wrong estimation (local) 6421124 6429108 121250 113262 CM091759.1 scf7180002754474 99.76 True indel: indel (> 5bp) 6401630 6421093 140761 121304 CM091759.1 scf7180002754474 99.41 True indel: indel (<= 5bp) 6386380 6401551 156009 140839 CM091759.1 scf7180002754474 99.43 True indel: stretch of mismatches 6344111 6386307 197503 156082 CM091759.1 scf7180002754474 97.52 True fake: scaffold gap size wrong estimation (local) 6317425 6343830 224041 197560 CM091759.1 scf7180002754474 99.38 True indel: indel (> 5bp) 6295912 6317376 245483 224045 CM091759.1 scf7180002754474 99.5 True fake: not a misassembly (possible transposable element) 14463494 14469912 252064 245504 CM091757.1 scf7180002754474 98.01 True fake: not a misassembly (possible transposable element) 6130449 6295709 415941 252085 CM091759.1 scf7180002754474 98.75 True fake: scaffold gap size wrong estimation (local) 6071642 6129858 474223 415997 CM091759.1 scf7180002754474 99.51 True local misassembly 6062294 6071192 483307 474398 CM091759.1 scf7180002754474 99.18 True fake: scaffold gap size wrong estimation (local) 6044205 6062153 501862 484297 CM091759.1 scf7180002754474 97.28 True fake: scaffold gap size wrong estimation (local) 6028657 6043935 517859 502585 CM091759.1 scf7180002754474 99.33 True fake: scaffold gap size wrong estimation (local) 5901703 6028566 644405 517941 CM091759.1 scf7180002754474 99.01 True relocation, scaffold gap is present, inconsistency = -16681 5884441 5901692 678335 661097 CM091759.1 scf7180002754474 99.66 True fake: scaffold gap size wrong estimation (local) 5849803 5883677 711642 678677 CM091759.1 scf7180002754474 96.66 True fake: scaffold gap size wrong estimation (local) 5844764 5849135 716485 712106 CM091759.1 scf7180002754474 98.97 True CONTIG scf7180002754474 716485 misassembled 2348840 2356277 1 7477 CM091767.1 scf7180002754475 98.37 True fake: scaffold gap size wrong estimation (local) 2356483 2392805 7659 43513 CM091767.1 scf7180002754475 97.03 True fake: scaffold gap size wrong estimation (local) 2400399 2401486 51225 52331 CM091767.1 scf7180002754475 97.83 True translocation, scaffold gap is present 13727371 13737366 62149 52352 CM091756.1 scf7180002754475 97.73 True translocation, scaffold gap is present 2401642 2418574 62170 79254 CM091767.1 scf7180002754475 98.69 True translocation, scaffold gap is present 13712830 13727494 94014 79351 CM091756.1 scf7180002754475 99.72 True translocation, scaffold gap is present 2418705 2441287 94035 116693 CM091767.1 scf7180002754475 98.38 True translocation, scaffold gap is present 13709714 13712940 119920 116714 CM091756.1 scf7180002754475 98.85 True local misassembly 13688127 13708186 140451 120391 CM091756.1 scf7180002754475 99.91 True fake: not a misassembly (possible transposable element) 2441372 2447922 140472 147028 CM091767.1 scf7180002754475 99.6 True fake: not a misassembly (possible transposable element) 13669540 13687898 165515 147158 CM091756.1 scf7180002754475 99.93 True translocation, scaffold gap is present 2448084 2464462 165536 181923 CM091767.1 scf7180002754475 99.49 True fake: scaffold gap size wrong estimation (local) 2471659 2548534 195346 272295 CM091767.1 scf7180002754475 99.37 True local misassembly 2548766 2576789 272327 299433 CM091767.1 scf7180002754475 96.35 True fake: scaffold gap size wrong estimation (local) 2577202 2703895 299628 425960 CM091767.1 scf7180002754475 99.16 True fake: scaffold gap size wrong estimation (local) 2704126 2970783 426135 692292 CM091767.1 scf7180002754475 99.38 True indel: indel (> 5bp) 2971057 3004301 692624 725668 CM091767.1 scf7180002754475 98.09 True local misassembly 3004412 3100726 725876 822046 CM091767.1 scf7180002754475 99.01 True indel: indel (> 5bp) 3100795 3121275 822124 842615 CM091767.1 scf7180002754475 99.41 True translocation, scaffold gap is present 15359192 15485326 968606 842636 CM091754.1 scf7180002754475 99.64 True fake: scaffold gap size wrong estimation (local) 15358449 15359042 969335 968742 CM091754.1 scf7180002754475 100.0 True fake: scaffold gap size wrong estimation (local) 15356801 15358342 970978 969438 CM091754.1 scf7180002754475 99.94 True indel: indel (> 5bp) 15353515 15356756 974289 971033 CM091754.1 scf7180002754475 99.01 True CONTIG scf7180002754475 974289 misassembled 1591649 1594009 1 2358 CM091765.1 scf7180002754476 99.66 True fake: scaffold gap size wrong estimation (local) 1594662 1601944 2850 10328 CM091765.1 scf7180002754476 97.14 True fake: scaffold gap size wrong estimation (local) 1602317 1604488 12607 14777 CM091765.1 scf7180002754476 99.91 True fake: scaffold gap size wrong estimation (local) 1606340 1608872 16805 19332 CM091765.1 scf7180002754476 99.53 True fake: scaffold gap size wrong estimation (local) 1609791 1624638 20380 34821 CM091765.1 scf7180002754476 96.19 True fake: scaffold gap size wrong estimation (local) 1625333 1625859 37887 38413 CM091765.1 scf7180002754476 99.81 True fake: scaffold gap size wrong estimation (local) 1628467 1633633 39829 44996 CM091765.1 scf7180002754476 99.69 True fake: scaffold gap size wrong estimation (local) 1633733 1637562 50726 54542 CM091765.1 scf7180002754476 98.1 True fake: scaffold gap size wrong estimation (local) 1638203 1645639 54931 65649 CM091765.1 scf7180002754476 96.96 True fake: scaffold gap size wrong estimation (local) 1645773 1649736 65758 69726 CM091765.1 scf7180002754476 99.72 True fake: scaffold gap size wrong estimation (local) 1649881 1655280 69871 75262 CM091765.1 scf7180002754476 99.44 True fake: scaffold gap size wrong estimation (local) 1655264 1664683 77777 87172 CM091765.1 scf7180002754476 99.21 True fake: scaffold gap size wrong estimation (local) 1664799 1673413 87276 95877 CM091765.1 scf7180002754476 98.99 True fake: scaffold gap size wrong estimation (local) 1673811 1697321 96359 119313 CM091765.1 scf7180002754476 97.23 True fake: scaffold gap size wrong estimation (local) 1697303 1716573 122181 140877 CM091765.1 scf7180002754476 96.38 True fake: scaffold gap size wrong estimation (local) 1717019 1723276 141327 147613 CM091765.1 scf7180002754476 99.57 True fake: scaffold gap size wrong estimation (local) 1723531 1727641 147852 151992 CM091765.1 scf7180002754476 99.61 True fake: scaffold gap size wrong estimation (local) 1727763 1746773 152094 170731 CM091765.1 scf7180002754476 97.44 True fake: scaffold gap size wrong estimation (local) 1749098 1750649 172995 174546 CM091765.1 scf7180002754476 99.68 True fake: scaffold gap size wrong estimation (local) 1750810 1809709 174716 232854 CM091765.1 scf7180002754476 97.92 True fake: scaffold gap size wrong estimation (local) 1809723 1818779 235792 244846 CM091765.1 scf7180002754476 99.58 True fake: scaffold gap size wrong estimation (extensive) 1818783 1827262 253847 262232 CM091765.1 scf7180002754476 98.12 True fake: scaffold gap size wrong estimation (local) 1827246 1827951 267183 267888 CM091765.1 scf7180002754476 99.43 True fake: scaffold gap size wrong estimation (local) 1828402 1884485 268359 324431 CM091765.1 scf7180002754476 99.42 True fake: scaffold gap size wrong estimation (local) 1884835 1912955 328767 356902 CM091765.1 scf7180002754476 99.33 True fake: scaffold gap size wrong estimation (local) 1913078 1928115 356989 372049 CM091765.1 scf7180002754476 99.19 True fake: scaffold gap size wrong estimation (local) 1928401 1948253 372234 392087 CM091765.1 scf7180002754476 98.9 True indel: indel (> 5bp) 1948589 1949836 392434 393689 CM091765.1 scf7180002754476 98.73 True fake: scaffold gap size wrong estimation (local) 1949949 2212412 393814 656493 CM091765.1 scf7180002754476 99.34 True CONTIG scf7180002754476 656493 correct 6323492 6363332 39868 1 CM091761.1 scf7180002754477 99.38 True fake: scaffold gap size wrong estimation (local) 6285613 6323076 78301 40792 CM091761.1 scf7180002754477 99.57 True indel: indel (> 5bp) 6282809 6285524 81111 78396 CM091761.1 scf7180002754477 99.93 True fake: scaffold gap size wrong estimation (local) 6210926 6282711 153142 81197 CM091761.1 scf7180002754477 99.45 True fake: scaffold gap size wrong estimation (extensive) 6061504 6210926 310947 161834 CM091761.1 scf7180002754477 99.23 True relocation, scaffold gap is present, inconsistency = -24881 6044831 6061460 352487 335872 CM091761.1 scf7180002754477 99.6 True relocation, scaffold gap is present, inconsistency = -14812 5995287 6044632 416866 367498 CM091761.1 scf7180002754477 99.78 True translocation, scaffold gap is present 4523089 4547864 416887 441632 CM091755.1 scf7180002754477 98.92 True translocation, scaffold gap is present 5963852 5995289 473008 441653 CM091761.1 scf7180002754477 99.51 True fake: scaffold gap size wrong estimation (local) 5938265 5963689 498643 473175 CM091761.1 scf7180002754477 99.4 True indel: indel (<= 5bp) 5926426 5938226 510504 498686 CM091761.1 scf7180002754477 99.35 True indel: indel (> 5bp) 5884131 5926044 557299 510908 CM091761.1 scf7180002754477 98.67 True fake: scaffold gap size wrong estimation (local) 5847056 5884100 598211 560394 CM091761.1 scf7180002754477 95.74 True fake: scaffold gap size wrong estimation (local) 5827572 5846910 617054 598330 CM091761.1 scf7180002754477 96.54 True local misassembly 5773334 5821932 665868 617221 CM091761.1 scf7180002754477 99.69 True CONTIG scf7180002754477 665944 misassembled 2111141 2198537 87164 1 CM091758.1 scf7180002754478 99.09 True indel: indel (> 5bp) 1988245 2111073 210142 87252 CM091758.1 scf7180002754478 99.63 True indel: indel (<= 5bp) 1948814 1988202 251945 210189 CM091758.1 scf7180002754478 99.07 True fake: scaffold gap size wrong estimation (local) 1807533 1948819 396732 256006 CM091758.1 scf7180002754478 98.57 True indel: indel (> 5bp) 1761460 1807507 442828 396788 CM091758.1 scf7180002754478 99.56 True indel: indel (<= 5bp) 1758576 1761454 445717 442837 CM091758.1 scf7180002754478 99.65 True translocation, scaffold gap is present 773965 775209 445738 446982 CM091766.1 scf7180002754478 99.6 True indel: indel (<= 5bp) 775210 776482 446984 448256 CM091766.1 scf7180002754478 99.76 True indel: indel (<= 5bp) 776704 779070 448480 450846 CM091766.1 scf7180002754478 99.87 True indel: indel (<= 5bp) 779076 780231 450854 452009 CM091766.1 scf7180002754478 99.91 True indel: indel (> 5bp) 780334 783747 452118 455531 CM091766.1 scf7180002754478 99.62 True fake: scaffold gap size wrong estimation (local) 783748 784302 460406 460960 CM091766.1 scf7180002754478 96.94 True indel: indel (> 5bp) 784368 786623 461032 463287 CM091766.1 scf7180002754478 99.87 True indel: indel (<= 5bp) 786635 787309 463301 463975 CM091766.1 scf7180002754478 99.26 True indel: indel (<= 5bp) 787311 790787 463976 467452 CM091766.1 scf7180002754478 99.68 True indel: indel (> 5bp) 790852 794493 467530 471171 CM091766.1 scf7180002754478 99.59 True indel: indel (<= 5bp) 794497 796716 471172 473391 CM091766.1 scf7180002754478 99.59 True indel: indel (<= 5bp) 796717 798131 473393 474807 CM091766.1 scf7180002754478 99.86 True indel: indel (<= 5bp) 798246 799118 474926 475798 CM091766.1 scf7180002754478 99.89 True translocation, scaffold gap is present 1753039 1753675 476462 475826 CM091758.1 scf7180002754478 96.55 True local misassembly 1751114 1752557 477906 476463 CM091758.1 scf7180002754478 99.45 True indel: indel (> 5bp) 1750455 1751001 478574 478028 CM091758.1 scf7180002754478 100.0 True indel: indel (<= 5bp) 1749233 1750451 479793 478575 CM091758.1 scf7180002754478 99.75 True indel: indel (<= 5bp) 1745470 1749232 483559 479797 CM091758.1 scf7180002754478 99.87 True indel: indel (<= 5bp) 1744951 1745468 484077 483560 CM091758.1 scf7180002754478 99.61 True local misassembly 1743650 1744420 485376 484606 CM091758.1 scf7180002754478 99.87 True indel: indel (<= 5bp) 1739267 1743579 489761 485449 CM091758.1 scf7180002754478 99.79 True indel: indel (<= 5bp) 1738441 1739266 490588 489763 CM091758.1 scf7180002754478 100.0 True indel: indel (> 5bp) 1737874 1738429 491144 490589 CM091758.1 scf7180002754478 100.0 True indel: indel (<= 5bp) 1736764 1737873 492255 491146 CM091758.1 scf7180002754478 98.11 True indel: indel (<= 5bp) 1731615 1736549 497400 492466 CM091758.1 scf7180002754478 99.88 True indel: indel (<= 5bp) 1728733 1731614 500283 497402 CM091758.1 scf7180002754478 99.72 True indel: indel (<= 5bp) 1728176 1728731 500839 500284 CM091758.1 scf7180002754478 99.82 True fake: scaffold gap size wrong estimation (extensive) 1725853 1727643 512577 510787 CM091758.1 scf7180002754478 100.0 True indel: indel (<= 5bp) 1724220 1725852 514211 512579 CM091758.1 scf7180002754478 99.57 True indel: indel (<= 5bp) 1723698 1724219 514734 514213 CM091758.1 scf7180002754478 99.62 True indel: stretch of mismatches 1720250 1723431 518182 515001 CM091758.1 scf7180002754478 99.91 True indel: indel (<= 5bp) 1718641 1720249 519793 518185 CM091758.1 scf7180002754478 99.94 True indel: indel (<= 5bp) 1716950 1718640 521485 519795 CM091758.1 scf7180002754478 99.35 True fake: scaffold gap size wrong estimation (local) 1712934 1716949 525517 521502 CM091758.1 scf7180002754478 99.93 True indel: indel (<= 5bp) 1706773 1712930 531675 525518 CM091758.1 scf7180002754478 99.79 True indel: stretch of mismatches 1703680 1706465 534768 531983 CM091758.1 scf7180002754478 99.57 True fake: scaffold gap size wrong estimation (local) 1701827 1703679 536638 534786 CM091758.1 scf7180002754478 99.41 True fake: scaffold gap size wrong estimation (local) 1698713 1701636 539757 536834 CM091758.1 scf7180002754478 99.66 True local misassembly 1696240 1697347 542231 541124 CM091758.1 scf7180002754478 99.82 True indel: indel (> 5bp) 1695423 1696084 543040 542379 CM091758.1 scf7180002754478 99.24 True indel: indel (<= 5bp) 1693639 1695279 544823 543183 CM091758.1 scf7180002754478 99.88 True local misassembly 1688081 1692714 550386 545753 CM091758.1 scf7180002754478 99.65 True indel: indel (<= 5bp) 1685189 1688078 553276 550387 CM091758.1 scf7180002754478 99.79 True indel: indel (<= 5bp) 1684108 1685187 554356 553277 CM091758.1 scf7180002754478 98.98 True indel: indel (<= 5bp) 1682435 1684107 556031 554359 CM091758.1 scf7180002754478 99.64 True indel: indel (> 5bp) 1680762 1682346 557746 556162 CM091758.1 scf7180002754478 99.81 True indel: indel (<= 5bp) 1679460 1680759 559046 557747 CM091758.1 scf7180002754478 99.54 True indel: indel (<= 5bp) 1678387 1679459 560120 559048 CM091758.1 scf7180002754478 99.44 True indel: stretch of mismatches 1677443 1677984 561064 560523 CM091758.1 scf7180002754478 99.82 True local misassembly 1674850 1676306 563670 562214 CM091758.1 scf7180002754478 98.63 True local misassembly 1671731 1674537 566477 563671 CM091758.1 scf7180002754478 99.61 True indel: indel (<= 5bp) 1671091 1671730 567118 566479 CM091758.1 scf7180002754478 99.84 True local misassembly 1669994 1670547 568219 567666 CM091758.1 scf7180002754478 100.0 True local misassembly 1668313 1669397 569898 568814 CM091758.1 scf7180002754478 99.82 True local misassembly 1666739 1667712 571466 570493 CM091758.1 scf7180002754478 99.69 True indel: indel (<= 5bp) 1664308 1666738 573898 571468 CM091758.1 scf7180002754478 99.75 True indel: indel (<= 5bp) 1663214 1664008 574995 574201 CM091758.1 scf7180002754478 97.48 True indel: indel (> 5bp) 1662546 1663137 575587 574996 CM091758.1 scf7180002754478 99.32 True indel: indel (<= 5bp) 1661984 1662493 576151 575642 CM091758.1 scf7180002754478 99.41 True indel: indel (<= 5bp) 1661143 1661775 576994 576362 CM091758.1 scf7180002754478 99.53 True indel: indel (<= 5bp) 1660391 1661142 577747 576996 CM091758.1 scf7180002754478 99.34 True fake: scaffold gap size wrong estimation (local) 1659090 1659884 579074 578280 CM091758.1 scf7180002754478 99.25 True local misassembly 1656126 1657409 581442 580159 CM091758.1 scf7180002754478 99.77 True indel: stretch of mismatches 1654728 1655881 582840 581687 CM091758.1 scf7180002754478 99.83 True indel: indel (<= 5bp) 1654136 1654727 583434 582843 CM091758.1 scf7180002754478 99.83 True indel: indel (<= 5bp) 1653250 1654135 584321 583436 CM091758.1 scf7180002754478 99.89 True indel: stretch of mismatches 1652277 1652899 585294 584672 CM091758.1 scf7180002754478 99.84 True indel: indel (<= 5bp) 1651563 1652276 586009 585296 CM091758.1 scf7180002754478 99.58 True indel: indel (<= 5bp) 1650972 1651561 586599 586010 CM091758.1 scf7180002754478 99.15 True local misassembly 1649150 1650113 588423 587460 CM091758.1 scf7180002754478 99.69 True indel: indel (<= 5bp) 1648144 1649148 589428 588424 CM091758.1 scf7180002754478 99.8 True fake: scaffold gap size wrong estimation (local) 1645703 1647156 591851 590398 CM091758.1 scf7180002754478 99.79 True indel: indel (<= 5bp) 1643174 1645702 594381 591853 CM091758.1 scf7180002754478 98.93 True fake: scaffold gap size wrong estimation (local) 1640616 1643005 596918 594529 CM091758.1 scf7180002754478 99.54 True indel: indel (<= 5bp) 1639567 1640190 597972 597349 CM091758.1 scf7180002754478 99.52 True indel: indel (<= 5bp) 1637093 1639566 600447 597974 CM091758.1 scf7180002754478 99.72 True indel: indel (<= 5bp) 1636002 1637090 601536 600448 CM091758.1 scf7180002754478 99.82 True indel: indel (<= 5bp) 1634141 1635555 603398 601984 CM091758.1 scf7180002754478 99.86 True local misassembly 1632865 1633376 604678 604167 CM091758.1 scf7180002754478 95.12 True fake: scaffold gap size wrong estimation (local) 1631609 1632841 611262 610030 CM091758.1 scf7180002754478 99.92 True local misassembly 1627391 1630953 615485 611923 CM091758.1 scf7180002754478 99.94 True indel: indel (<= 5bp) 1624893 1627349 617982 615526 CM091758.1 scf7180002754478 100.0 True indel: indel (<= 5bp) 1623501 1624892 619375 617984 CM091758.1 scf7180002754478 100.0 True indel: indel (<= 5bp) 1620062 1623500 622815 619377 CM091758.1 scf7180002754478 99.97 True indel: indel (<= 5bp) 1618182 1620060 624694 622816 CM091758.1 scf7180002754478 99.84 True indel: indel (<= 5bp) 1613196 1618181 629681 624696 CM091758.1 scf7180002754478 99.8 True indel: indel (<= 5bp) 1612378 1613195 630500 629683 CM091758.1 scf7180002754478 99.51 True indel: indel (<= 5bp) 1611382 1612377 631497 630502 CM091758.1 scf7180002754478 99.8 True indel: indel (<= 5bp) 1610107 1611380 632771 631498 CM091758.1 scf7180002754478 99.84 True indel: indel (<= 5bp) 1608638 1609947 634242 632933 CM091758.1 scf7180002754478 99.69 True indel: indel (<= 5bp) 1606713 1608396 636169 634486 CM091758.1 scf7180002754478 99.58 True indel: indel (<= 5bp) 1605618 1606712 637265 636171 CM091758.1 scf7180002754478 99.54 True indel: indel (<= 5bp) 1605075 1605617 637809 637267 CM091758.1 scf7180002754478 99.82 True indel: indel (> 5bp) 1603958 1604778 638933 638113 CM091758.1 scf7180002754478 99.51 True indel: indel (<= 5bp) 1603360 1603957 639532 638935 CM091758.1 scf7180002754478 99.83 True indel: indel (<= 5bp) 1602762 1603359 640131 639534 CM091758.1 scf7180002754478 99.67 True indel: stretch of mismatches 1599340 1602372 643553 640521 CM091758.1 scf7180002754478 99.64 True indel: indel (<= 5bp) 1598519 1599339 644375 643555 CM091758.1 scf7180002754478 99.76 True indel: indel (<= 5bp) 1597533 1598165 645358 644726 CM091758.1 scf7180002754478 99.37 True indel: indel (<= 5bp) 1595124 1597372 647768 645520 CM091758.1 scf7180002754478 99.51 True indel: indel (<= 5bp) 1594122 1594693 648771 648200 CM091758.1 scf7180002754478 99.48 True local misassembly 1592982 1593584 649907 649305 CM091758.1 scf7180002754478 100.0 True indel: indel (<= 5bp) 1592240 1592981 650650 649909 CM091758.1 scf7180002754478 99.73 True indel: indel (<= 5bp) 1590117 1592239 652775 650653 CM091758.1 scf7180002754478 99.86 True indel: indel (<= 5bp) 1585312 1590104 657582 652790 CM091758.1 scf7180002754478 99.67 True indel: indel (<= 5bp) 1584595 1585311 658300 657584 CM091758.1 scf7180002754478 100.0 True indel: indel (<= 5bp) 1583484 1584525 659413 658372 CM091758.1 scf7180002754478 99.23 True local misassembly 1581549 1582555 661348 660342 CM091758.1 scf7180002754478 99.6 True indel: indel (<= 5bp) 1580834 1581547 662062 661349 CM091758.1 scf7180002754478 99.86 True indel: indel (<= 5bp) 1579650 1580833 663247 662064 CM091758.1 scf7180002754478 99.92 True local misassembly 1576008 1578660 666880 664228 CM091758.1 scf7180002754478 99.51 True translocation, scaffold gap is present 14713258 14747262 701150 667292 CM091753.1 scf7180002754478 99.3 True translocation, scaffold gap is present 1552551 1575610 743659 720609 CM091758.1 scf7180002754478 99.45 True indel: stretch of mismatches 1540823 1552238 755178 743972 CM091758.1 scf7180002754478 97.37 True indel: indel (<= 5bp) 1540000 1540769 756000 755230 CM091758.1 scf7180002754478 99.74 True fake: scaffold gap size wrong estimation (local) 1443163 1539893 850656 756090 CM091758.1 scf7180002754478 97.04 True indel: indel (<= 5bp) 1399911 1443103 892880 850720 CM091758.1 scf7180002754478 96.91 True CONTIG scf7180002754478 892880 misassembled 4539919 4563567 24 23584 CM091756.1 scf7180002754479 99.11 True indel: indel (> 5bp) 4563757 4629338 23728 88931 CM091756.1 scf7180002754479 98.21 True fake: scaffold gap size wrong estimation (local) 4629530 4741571 89236 201319 CM091756.1 scf7180002754479 99.17 True indel: indel (> 5bp) 4741633 4813423 201393 273310 CM091756.1 scf7180002754479 99.24 True translocation, scaffold gap is present 10944082 10946204 273331 275453 CM091765.1 scf7180002754479 100.0 True indel: indel (> 5bp) 10946215 10950062 275454 279301 CM091765.1 scf7180002754479 98.52 True fake: scaffold gap size wrong estimation (local) 10950923 10951956 279560 280593 CM091765.1 scf7180002754479 100.0 True translocation, scaffold gap is present 4813740 4878188 280614 345044 CM091756.1 scf7180002754479 99.54 True translocation, scaffold gap is present 10952050 10968418 345065 361441 CM091765.1 scf7180002754479 99.97 True fake: scaffold gap size wrong estimation (local) 10970720 10972784 362246 364317 CM091765.1 scf7180002754479 99.57 True fake: scaffold gap size wrong estimation (local) 10973104 10976458 364718 368124 CM091765.1 scf7180002754479 97.34 True translocation, scaffold gap is present 4878196 5121369 408349 651123 CM091756.1 scf7180002754479 99.1 True indel: indel (> 5bp) 5121538 5122416 651303 652181 CM091756.1 scf7180002754479 99.77 True indel: indel (> 5bp) 5122800 5123844 652591 653635 CM091756.1 scf7180002754479 99.9 True indel: indel (> 5bp) 5124239 5125125 654022 654908 CM091756.1 scf7180002754479 99.89 True indel: stretch of mismatches 5125323 5125989 655106 655772 CM091756.1 scf7180002754479 99.7 True local misassembly 5126681 5129712 656464 659495 CM091756.1 scf7180002754479 99.84 True fake: scaffold gap size wrong estimation (local) 5131102 5132754 659948 661600 CM091756.1 scf7180002754479 99.76 True indel: indel (> 5bp) 5133261 5133907 662101 662747 CM091756.1 scf7180002754479 99.85 True local misassembly 5134993 5136825 663836 665668 CM091756.1 scf7180002754479 99.73 True indel: indel (<= 5bp) 5137134 5140971 665976 669813 CM091756.1 scf7180002754479 99.56 True indel: indel (<= 5bp) 5140972 5141737 669815 670580 CM091756.1 scf7180002754479 99.74 True indel: indel (> 5bp) 5142154 5143266 670981 672093 CM091756.1 scf7180002754479 99.73 True indel: indel (> 5bp) 5143267 5143869 672104 672706 CM091756.1 scf7180002754479 99.83 True fake: scaffold gap size wrong estimation (local) 5150244 5152102 673879 675737 CM091756.1 scf7180002754479 99.52 True indel: indel (<= 5bp) 5152148 5153487 675785 677124 CM091756.1 scf7180002754479 100.0 True indel: indel (<= 5bp) 5153489 5155823 677125 679459 CM091756.1 scf7180002754479 99.74 True fake: scaffold gap size wrong estimation (local) 5156401 5172027 679536 695144 CM091756.1 scf7180002754479 98.52 True indel: indel (<= 5bp) 5172056 5344583 695178 867224 CM091756.1 scf7180002754479 99.17 True translocation, scaffold gap is present 2008786 2095632 1640592 1727420 CM091751.1 scf7180002754479 99.59 True fake: scaffold gap size wrong estimation (local) 2095802 2124986 1727586 1756441 CM091751.1 scf7180002754479 95.92 True fake: scaffold gap size wrong estimation (local) 2125603 2126207 1756841 1757445 CM091751.1 scf7180002754479 99.67 True local misassembly 2126795 2127870 1758053 1759128 CM091751.1 scf7180002754479 99.07 True indel: indel (<= 5bp) 2127872 2128989 1759129 1760246 CM091751.1 scf7180002754479 99.73 True fake: scaffold gap size wrong estimation (local) 2130962 2132116 1761841 1762995 CM091751.1 scf7180002754479 99.22 True local misassembly 2132823 2133417 1763703 1764297 CM091751.1 scf7180002754479 98.82 True indel: indel (> 5bp) 2133418 2134781 1764313 1765676 CM091751.1 scf7180002754479 99.41 True local misassembly 2135988 2137172 1766414 1767598 CM091751.1 scf7180002754479 98.57 True indel: indel (> 5bp) 2137219 2137949 1767599 1768329 CM091751.1 scf7180002754479 99.18 True indel: indel (<= 5bp) 2137955 2139668 1768330 1770043 CM091751.1 scf7180002754479 99.36 True fake: scaffold gap size wrong estimation (local) 2140550 2143131 1770336 1772917 CM091751.1 scf7180002754479 99.54 True indel: indel (<= 5bp) 2143195 2144753 1772978 1774536 CM091751.1 scf7180002754479 99.49 True indel: indel (<= 5bp) 2145042 2154723 1774829 1784454 CM091751.1 scf7180002754479 97.68 True translocation 4097440 4098231 1784465 1785255 CM091768.1 scf7180002754479 96.23 True CONTIG scf7180002754479 1785255 misassembled 7132580 7155488 1 23028 CM091759.1 scf7180002754480 98.85 True fake: scaffold gap size wrong estimation (local) 7155538 7208645 24814 77298 CM091759.1 scf7180002754480 98.1 True relocation, scaffold gap is present, inconsistency = -39808 7208735 7312237 117196 220468 CM091759.1 scf7180002754480 98.94 True fake: scaffold gap size wrong estimation (local) 7312344 7433242 220604 340189 CM091759.1 scf7180002754480 98.11 True indel: stretch of mismatches 7433299 7680866 340246 588032 CM091759.1 scf7180002754480 99.36 True fake: scaffold gap size wrong estimation (local) 7681046 7707581 588222 614712 CM091759.1 scf7180002754480 99.28 True indel: stretch of mismatches 7707582 7775877 614713 682468 CM091759.1 scf7180002754480 98.74 True indel: stretch of mismatches 7775966 7898028 682557 805514 CM091759.1 scf7180002754480 99.2 True fake: scaffold gap size wrong estimation (local) 7898184 7930883 805604 838112 CM091759.1 scf7180002754480 98.89 True fake: scaffold gap size wrong estimation (local) 7931115 8031867 838298 939226 CM091759.1 scf7180002754480 99.37 True indel: indel (> 5bp) 8031908 8160687 939281 1067795 CM091759.1 scf7180002754480 99.71 True indel: indel (> 5bp) 8160736 8180264 1067857 1087379 CM091759.1 scf7180002754480 99.65 True CONTIG scf7180002754480 1087379 misassembled 2620365 2719041 98445 1 CM091753.1 scf7180002754481 97.8 True fake: scaffold gap size wrong estimation (local) 2613744 2619992 104969 98715 CM091753.1 scf7180002754481 98.96 True translocation, scaffold gap is present 3044788 3045373 106393 106978 CM091754.1 scf7180002754481 99.66 True indel: indel (> 5bp) 3045466 3047453 107049 109039 CM091754.1 scf7180002754481 99.1 True translocation, scaffold gap is present 2602962 2612786 118894 109060 CM091753.1 scf7180002754481 99.52 True translocation, scaffold gap is present 3047478 3054704 118915 126128 CM091754.1 scf7180002754481 98.44 True translocation, scaffold gap is present 9195945 9202299 126149 132467 CM091767.1 scf7180002754481 97.69 True translocation 16444935 16446737 134270 132468 CM091752.1 scf7180002754481 98.8 True translocation, scaffold gap is present 3055198 3077691 134291 156727 CM091754.1 scf7180002754481 98.95 True indel: indel (> 5bp) 3077884 3078552 156935 157603 CM091754.1 scf7180002754481 99.55 True indel: indel (<= 5bp) 3078898 3080372 157945 159419 CM091754.1 scf7180002754481 99.53 True local misassembly 3080875 3081408 159926 160459 CM091754.1 scf7180002754481 99.25 True indel: indel (<= 5bp) 3081409 3081948 160461 161000 CM091754.1 scf7180002754481 99.26 True local misassembly 3084805 3086336 163108 164639 CM091754.1 scf7180002754481 97.98 True fake: scaffold gap size wrong estimation (local) 3086403 3088353 165025 166975 CM091754.1 scf7180002754481 99.08 True indel: indel (<= 5bp) 3088354 3090382 166977 169005 CM091754.1 scf7180002754481 99.11 True indel: indel (<= 5bp) 3090384 3090895 169006 169517 CM091754.1 scf7180002754481 99.61 True fake: scaffold gap size wrong estimation (local) 3092919 3093530 171212 171823 CM091754.1 scf7180002754481 99.67 True indel: indel (<= 5bp) 3093532 3094035 171824 172327 CM091754.1 scf7180002754481 98.61 True indel: indel (<= 5bp) 3094036 3095731 172329 174024 CM091754.1 scf7180002754481 99.65 True fake: scaffold gap size wrong estimation (local) 3097556 3098112 174959 175515 CM091754.1 scf7180002754481 99.64 True indel: indel (<= 5bp) 3098393 3099263 175800 176670 CM091754.1 scf7180002754481 99.77 True local misassembly 3100536 3101163 177947 178574 CM091754.1 scf7180002754481 99.52 True local misassembly 3103711 3104684 181147 182120 CM091754.1 scf7180002754481 99.18 True indel: indel (> 5bp) 3105175 3157467 182602 233292 CM091754.1 scf7180002754481 95.7 True indel: indel (> 5bp) 3157542 3162321 233361 238008 CM091754.1 scf7180002754481 95.9 True fake: scaffold gap size wrong estimation (local) 3163001 3164104 239144 240247 CM091754.1 scf7180002754481 99.46 True indel: indel (<= 5bp) 3164106 3165401 240248 241543 CM091754.1 scf7180002754481 99.69 True fake: scaffold gap size wrong estimation (local) 3166807 3167357 242569 243119 CM091754.1 scf7180002754481 99.46 True local misassembly 3168839 3170019 244605 245785 CM091754.1 scf7180002754481 99.75 True translocation 11963966 11981334 264064 246663 CM091757.1 scf7180002754481 98.58 True local misassembly 11890132 11963620 337686 264090 CM091757.1 scf7180002754481 98.2 True local misassembly 11870537 11889693 357385 338244 CM091757.1 scf7180002754481 99.55 True indel: indel (> 5bp) 11798689 11870403 429273 357465 CM091757.1 scf7180002754481 99.22 True fake: scaffold gap size wrong estimation (local) 11715313 11798587 512534 429384 CM091757.1 scf7180002754481 98.77 True indel: indel (> 5bp) 11708813 11715237 519095 512637 CM091757.1 scf7180002754481 99.47 True fake: scaffold gap size wrong estimation (local) 11675170 11708065 552706 519794 CM091757.1 scf7180002754481 99.56 True fake: scaffold gap size wrong estimation (local) 11673883 11674386 553349 552833 CM091757.1 scf7180002754481 99.79 True fake: scaffold gap size wrong estimation (local) 11521440 11673303 704183 553900 CM091757.1 scf7180002754481 98.4 True indel: indel (<= 5bp) 11498480 11521137 726425 704490 CM091757.1 scf7180002754481 96.07 True translocation, scaffold gap is present 6123184 6144444 726446 747600 CM091763.1 scf7180002754481 99.17 True translocation, scaffold gap is present 11481577 11498480 764513 747621 CM091757.1 scf7180002754481 99.7 True translocation, scaffold gap is present 6144594 6311895 764540 931514 CM091763.1 scf7180002754481 98.97 True CONTIG scf7180002754481 931514 misassembled 12527586 12563778 35533 1 CM091759.1 scf7180002754482 97.43 True indel: indel (> 5bp) 12525402 12527403 37734 35733 CM091759.1 scf7180002754482 99.75 True indel: indel (<= 5bp) 12524669 12525401 38468 37736 CM091759.1 scf7180002754482 99.86 True indel: indel (<= 5bp) 12523408 12524667 39728 38469 CM091759.1 scf7180002754482 99.52 True indel: indel (<= 5bp) 12521897 12523407 41240 39730 CM091759.1 scf7180002754482 99.74 True fake: scaffold gap size wrong estimation (local) 12520676 12521329 42203 41550 CM091759.1 scf7180002754482 99.08 True indel: indel (<= 5bp) 12519116 12520674 43762 42204 CM091759.1 scf7180002754482 99.74 True indel: indel (<= 5bp) 12518604 12519115 44275 43764 CM091759.1 scf7180002754482 99.22 True indel: indel (<= 5bp) 12517684 12518460 45197 44421 CM091759.1 scf7180002754482 99.61 True indel: indel (<= 5bp) 12516978 12517682 45902 45198 CM091759.1 scf7180002754482 99.72 True local misassembly 12497589 12516392 64218 45903 CM091759.1 scf7180002754482 96.54 True relocation, scaffold gap is present, inconsistency = -11110 12495402 12497709 77515 75208 CM091759.1 scf7180002754482 98.83 True fake: scaffold gap size wrong estimation (local) 12493198 12494753 79817 78262 CM091759.1 scf7180002754482 99.23 True indel: indel (<= 5bp) 12491729 12493195 81284 79818 CM091759.1 scf7180002754482 98.3 True local misassembly 12258026 12491061 313021 81332 CM091759.1 scf7180002754482 98.93 True indel: stretch of mismatches 12252224 12258025 318829 313022 CM091759.1 scf7180002754482 99.45 True fake: scaffold gap size wrong estimation (local) 12249069 12250313 322296 321049 CM091759.1 scf7180002754482 99.52 True local misassembly 12250307 12252063 324093 322336 CM091759.1 scf7180002754482 99.54 True fake: scaffold gap size wrong estimation (local) 12244885 12245645 324874 324114 CM091759.1 scf7180002754482 99.87 True indel: indel (<= 5bp) 12244346 12244883 325412 324875 CM091759.1 scf7180002754482 96.1 True local misassembly 12243254 12244045 326204 325413 CM091759.1 scf7180002754482 99.62 True local misassembly 12239620 12242739 329839 326720 CM091759.1 scf7180002754482 99.74 True fake: scaffold gap size wrong estimation (local) 12223540 12235160 341841 330192 CM091759.1 scf7180002754482 99.15 True relocation, scaffold gap is present, inconsistency = -15559 12235055 12238591 345884 342349 CM091759.1 scf7180002754482 99.43 True fake: scaffold gap size wrong estimation (extensive) 12219524 12220229 354379 353680 CM091759.1 scf7180002754482 98.02 True indel: indel (> 5bp) 12217991 12219294 355898 354595 CM091759.1 scf7180002754482 98.24 True indel: indel (<= 5bp) 12214687 12217608 359205 356284 CM091759.1 scf7180002754482 99.93 True fake: scaffold gap size wrong estimation (local) 12205605 12211741 366444 360313 CM091759.1 scf7180002754482 99.58 True fake: scaffold gap size wrong estimation (local) 12192434 12205460 379739 366714 CM091759.1 scf7180002754482 99.49 True CONTIG scf7180002754482 379739 misassembled 1084255 1244237 12 159157 CM091768.1 scf7180002754483 98.58 True fake: scaffold gap size wrong estimation (local) 1244353 1257812 159266 172824 CM091768.1 scf7180002754483 99.44 True local misassembly 1259296 1272832 173448 186659 CM091768.1 scf7180002754483 95.81 True local misassembly 1273515 1274071 187314 187870 CM091768.1 scf7180002754483 99.64 True indel: indel (<= 5bp) 1274072 1275822 187872 189622 CM091768.1 scf7180002754483 99.31 True local misassembly 1276532 1277659 189623 190750 CM091768.1 scf7180002754483 99.11 True local misassembly 1278758 1279457 191857 192556 CM091768.1 scf7180002754483 99.0 True fake: scaffold gap size wrong estimation (local) 1279537 1285643 192633 198800 CM091768.1 scf7180002754483 98.42 True fake: scaffold gap size wrong estimation (local) 1286581 1288763 199652 201834 CM091768.1 scf7180002754483 99.59 True fake: scaffold gap size wrong estimation (local) 1289286 1290797 202356 203867 CM091768.1 scf7180002754483 99.54 True local misassembly 1291801 1293061 204865 206125 CM091768.1 scf7180002754483 99.76 True indel: indel (<= 5bp) 1293062 1293741 206127 206806 CM091768.1 scf7180002754483 99.56 True fake: scaffold gap size wrong estimation (local) 1294582 1295634 207620 208672 CM091768.1 scf7180002754483 99.05 True indel: indel (> 5bp) 1295901 1297198 208947 210244 CM091768.1 scf7180002754483 99.54 True indel: indel (<= 5bp) 1297199 1298393 210246 211440 CM091768.1 scf7180002754483 99.5 True local misassembly 1299474 1301173 212531 214230 CM091768.1 scf7180002754483 99.35 True indel: indel (> 5bp) 1301355 1303617 214423 216685 CM091768.1 scf7180002754483 99.91 True local misassembly 1304153 1306283 217222 219352 CM091768.1 scf7180002754483 99.86 True fake: scaffold gap size wrong estimation (local) 1306284 1307050 219372 220138 CM091768.1 scf7180002754483 99.61 True indel: indel (<= 5bp) 1307099 1308528 220184 221613 CM091768.1 scf7180002754483 98.32 True indel: indel (<= 5bp) 1308531 1310551 221614 223634 CM091768.1 scf7180002754483 99.65 True local misassembly 1312425 1313327 224166 225068 CM091768.1 scf7180002754483 99.34 True fake: scaffold gap size wrong estimation (local) 1313557 1316329 229453 232225 CM091768.1 scf7180002754483 99.5 True fake: not a misassembly (possible transposable element) 1331179 1335316 232399 236505 CM091768.1 scf7180002754483 98.22 True fake: not a misassembly (possible transposable element) 1321112 1321948 236537 237373 CM091768.1 scf7180002754483 99.64 True indel: indel (<= 5bp) 1321950 1323738 237374 239162 CM091768.1 scf7180002754483 99.61 True indel: indel (> 5bp) 1323739 1324316 239179 239756 CM091768.1 scf7180002754483 99.31 True indel: indel (<= 5bp) 1324319 1326220 239757 241658 CM091768.1 scf7180002754483 99.47 True local misassembly 1327611 1328981 242070 243440 CM091768.1 scf7180002754483 99.64 True indel: indel (<= 5bp) 1328982 1329515 243444 243977 CM091768.1 scf7180002754483 100.0 True indel: indel (<= 5bp) 1329759 1330380 244223 244844 CM091768.1 scf7180002754483 99.84 True indel: indel (> 5bp) 1330388 1331163 244845 245620 CM091768.1 scf7180002754483 98.84 True relocation, scaffold gap is present, inconsistency = -13758 1318052 1318766 246267 246981 CM091768.1 scf7180002754483 99.44 True fake: scaffold gap size wrong estimation (local) 1318767 1319768 247241 248242 CM091768.1 scf7180002754483 99.6 True indel: indel (<= 5bp) 1319770 1320452 248243 248925 CM091768.1 scf7180002754483 99.12 True relocation, scaffold gap is present, inconsistency = 14376 1336917 1337627 251014 251724 CM091768.1 scf7180002754483 99.16 True indel: indel (<= 5bp) 1337724 1340103 251820 254199 CM091768.1 scf7180002754483 99.79 True indel: indel (> 5bp) 1340128 1341169 254217 255258 CM091768.1 scf7180002754483 99.14 True indel: indel (> 5bp) 1341447 1342066 255543 256162 CM091768.1 scf7180002754483 99.84 True indel: stretch of mismatches 1342384 1343171 256480 257267 CM091768.1 scf7180002754483 99.37 True local misassembly 1344376 1345888 257894 259406 CM091768.1 scf7180002754483 99.41 True local misassembly 1347044 1348265 259629 260850 CM091768.1 scf7180002754483 99.67 True indel: indel (<= 5bp) 1348266 1350206 260852 262792 CM091768.1 scf7180002754483 98.82 True local misassembly 1351579 1352168 263232 263821 CM091768.1 scf7180002754483 99.83 True indel: indel (<= 5bp) 1352169 1353350 263823 265004 CM091768.1 scf7180002754483 98.98 True indel: indel (<= 5bp) 1353707 1354542 265363 266198 CM091768.1 scf7180002754483 99.52 True indel: indel (<= 5bp) 1354795 1355860 266454 267519 CM091768.1 scf7180002754483 99.44 True indel: indel (<= 5bp) 1355861 1356717 267521 268377 CM091768.1 scf7180002754483 99.07 True indel: indel (> 5bp) 1356718 1357484 268398 269164 CM091768.1 scf7180002754483 98.83 True local misassembly 1358543 1359356 269651 270464 CM091768.1 scf7180002754483 99.26 True indel: indel (<= 5bp) 1359362 1360636 270465 271739 CM091768.1 scf7180002754483 99.45 True indel: indel (<= 5bp) 1360868 1361417 271973 272522 CM091768.1 scf7180002754483 100.0 True indel: indel (<= 5bp) 1361418 1362210 272524 273316 CM091768.1 scf7180002754483 99.62 True local misassembly 1363008 1367437 274120 278553 CM091768.1 scf7180002754483 99.28 True relocation, scaffold gap is present, inconsistency = -29607 1368260 1370332 308983 311055 CM091768.1 scf7180002754483 99.42 True indel: indel (<= 5bp) 1370413 1372280 311135 313002 CM091768.1 scf7180002754483 99.57 True indel: indel (<= 5bp) 1372752 1373283 313473 314004 CM091768.1 scf7180002754483 99.25 True local misassembly 1374359 1376140 314390 316171 CM091768.1 scf7180002754483 99.78 True fake: scaffold gap size wrong estimation (local) 1376141 1378187 316205 318251 CM091768.1 scf7180002754483 99.32 True local misassembly 1378888 1379644 318612 319368 CM091768.1 scf7180002754483 99.6 True indel: indel (<= 5bp) 1379645 1380344 319370 320069 CM091768.1 scf7180002754483 100.0 True fake: scaffold gap size wrong estimation (local) 1380566 1393851 320311 333441 CM091768.1 scf7180002754483 98.19 True local misassembly 1394531 1402604 333678 341559 CM091768.1 scf7180002754483 96.96 True local misassembly 1403277 1404505 342274 343502 CM091768.1 scf7180002754483 99.84 True indel: indel (> 5bp) 1404959 1405633 343942 344616 CM091768.1 scf7180002754483 96.74 True indel: indel (<= 5bp) 1405634 1406588 344618 345572 CM091768.1 scf7180002754483 99.69 True local misassembly 1407284 1408030 346271 347017 CM091768.1 scf7180002754483 99.46 True indel: indel (<= 5bp) 1408031 1409038 347021 348028 CM091768.1 scf7180002754483 99.21 True indel: indel (<= 5bp) 1409060 1411329 348051 350320 CM091768.1 scf7180002754483 99.3 True local misassembly 1413847 1414851 352037 353041 CM091768.1 scf7180002754483 99.4 True indel: indel (<= 5bp) 1414852 1417225 353043 355416 CM091768.1 scf7180002754483 99.58 True indel: indel (> 5bp) 1417233 1417766 355417 355950 CM091768.1 scf7180002754483 95.51 True local misassembly 1418396 1418907 356576 357087 CM091768.1 scf7180002754483 98.83 True local misassembly 1419824 1421683 358033 359892 CM091768.1 scf7180002754483 98.92 True fake: scaffold gap size wrong estimation (local) 1422747 1431177 361311 369889 CM091768.1 scf7180002754483 98.2 True fake: scaffold gap size wrong estimation (local) 1431266 1446679 369978 385271 CM091768.1 scf7180002754483 98.01 True local misassembly 1449358 1450558 387849 389049 CM091768.1 scf7180002754483 99.5 True indel: indel (<= 5bp) 1450559 1451067 389051 389559 CM091768.1 scf7180002754483 100.0 True indel: indel (<= 5bp) 1451069 1452393 389560 390884 CM091768.1 scf7180002754483 99.85 True indel: indel (<= 5bp) 1452757 1454493 391246 392982 CM091768.1 scf7180002754483 99.25 True local misassembly 1456088 1456746 393681 394339 CM091768.1 scf7180002754483 99.54 True local misassembly 1457625 1458484 394340 395199 CM091768.1 scf7180002754483 99.19 True fake: scaffold gap size wrong estimation (local) 1459065 1459582 395783 396300 CM091768.1 scf7180002754483 99.61 True indel: indel (<= 5bp) 1459606 1460502 396326 397222 CM091768.1 scf7180002754483 98.44 True indel: indel (<= 5bp) 1460503 1461098 397224 397819 CM091768.1 scf7180002754483 99.5 True fake: scaffold gap size wrong estimation (local) 1461099 1461652 397852 398405 CM091768.1 scf7180002754483 99.46 True indel: indel (<= 5bp) 1461973 1463043 398729 399799 CM091768.1 scf7180002754483 99.07 True indel: indel (<= 5bp) 1463174 1465510 399931 402267 CM091768.1 scf7180002754483 99.79 True local misassembly 1466646 1467191 403366 403911 CM091768.1 scf7180002754483 98.53 True indel: indel (<= 5bp) 1467192 1468073 403913 404794 CM091768.1 scf7180002754483 99.55 True indel: stretch of mismatches 1468441 1469673 405162 406394 CM091768.1 scf7180002754483 99.43 True indel: indel (<= 5bp) 1469675 1471498 406395 408218 CM091768.1 scf7180002754483 99.29 True indel: indel (<= 5bp) 1471500 1472367 408219 409086 CM091768.1 scf7180002754483 99.19 True local misassembly 1473038 1474398 409272 410632 CM091768.1 scf7180002754483 99.78 True fake: scaffold gap size wrong estimation (local) 1474721 1476138 410983 412400 CM091768.1 scf7180002754483 99.72 True indel: indel (<= 5bp) 1476139 1477105 412402 413368 CM091768.1 scf7180002754483 99.79 True local misassembly 1477727 1478618 413615 414506 CM091768.1 scf7180002754483 97.31 True indel: indel (<= 5bp) 1478799 1479379 414685 415265 CM091768.1 scf7180002754483 99.31 True fake: scaffold gap size wrong estimation (local) 1482648 1484735 417565 419652 CM091768.1 scf7180002754483 99.71 True local misassembly 1486510 1488973 420786 423249 CM091768.1 scf7180002754483 99.76 True indel: indel (<= 5bp) 1489397 1491584 423675 425862 CM091768.1 scf7180002754483 99.82 True fake: scaffold gap size wrong estimation (local) 1493785 1494577 428046 428838 CM091768.1 scf7180002754483 100.0 True fake: scaffold gap size wrong estimation (local) 1495807 1496308 430091 430592 CM091768.1 scf7180002754483 100.0 True indel: indel (<= 5bp) 1496312 1496960 430593 431241 CM091768.1 scf7180002754483 99.23 True fake: scaffold gap size wrong estimation (local) 1498172 1498768 432505 433101 CM091768.1 scf7180002754483 98.83 True local misassembly 1499719 1500253 433108 433642 CM091768.1 scf7180002754483 96.07 True indel: indel (> 5bp) 1500272 1501048 433643 434419 CM091768.1 scf7180002754483 99.49 True indel: indel (> 5bp) 1501092 1501751 434457 435116 CM091768.1 scf7180002754483 98.94 True fake: scaffold gap size wrong estimation (local) 1501992 1536063 435333 469541 CM091768.1 scf7180002754483 98.77 True translocation, scaffold gap is present 10829601 10841728 481723 469586 CM091755.1 scf7180002754483 99.32 True fake: not a misassembly (possible transposable element) 1536317 1541627 482080 487390 CM091768.1 scf7180002754483 99.4 True fake: not a misassembly (possible transposable element) 10817069 10829463 499831 487411 CM091755.1 scf7180002754483 99.15 True translocation, scaffold gap is present 1541656 1543688 499852 501926 CM091768.1 scf7180002754483 99.12 True fake: scaffold gap size wrong estimation (local) 1543880 1548440 502093 506654 CM091768.1 scf7180002754483 99.14 True indel: indel (> 5bp) 1548472 1550590 506677 508798 CM091768.1 scf7180002754483 98.96 True fake: scaffold gap size wrong estimation (local) 1551015 1551632 509373 509990 CM091768.1 scf7180002754483 98.38 True indel: indel (> 5bp) 1551635 1552250 510003 510618 CM091768.1 scf7180002754483 99.51 True indel: indel (> 5bp) 1552265 1553143 510619 511497 CM091768.1 scf7180002754483 99.66 True local misassembly 1554264 1555287 511498 512521 CM091768.1 scf7180002754483 99.22 True indel: indel (<= 5bp) 1555290 1557082 512522 514314 CM091768.1 scf7180002754483 99.22 True indel: indel (> 5bp) 1557479 1557984 514704 515209 CM091768.1 scf7180002754483 99.01 True local misassembly 1561142 1561675 518348 518881 CM091768.1 scf7180002754483 99.81 True indel: indel (<= 5bp) 1561676 1563336 518883 520543 CM091768.1 scf7180002754483 99.7 True indel: indel (> 5bp) 1563337 1565566 520550 522779 CM091768.1 scf7180002754483 99.19 True indel: indel (<= 5bp) 1565567 1567924 522781 525138 CM091768.1 scf7180002754483 99.28 True local misassembly 1569237 1569832 525139 525734 CM091768.1 scf7180002754483 99.5 True indel: indel (<= 5bp) 1569837 1570413 525735 526311 CM091768.1 scf7180002754483 100.0 True indel: indel (<= 5bp) 1570417 1571821 526312 527716 CM091768.1 scf7180002754483 99.36 True translocation, scaffold gap is present 10772935 10817047 572387 528447 CM091755.1 scf7180002754483 98.57 True indel: indel (> 5bp) 10726951 10772816 618469 572552 CM091755.1 scf7180002754483 99.37 True translocation 7655154 7655834 619186 619866 CM091760.1 scf7180002754483 98.97 True CONTIG scf7180002754483 619880 misassembled 7629895 7630429 218 752 CM091762.1 scf7180002754484 99.25 True indel: indel (<= 5bp) 7630433 7631675 753 1995 CM091762.1 scf7180002754484 99.52 True indel: indel (<= 5bp) 7632167 7633511 2491 3835 CM091762.1 scf7180002754484 99.7 True fake: scaffold gap size wrong estimation (local) 7633670 7634299 4024 4653 CM091762.1 scf7180002754484 99.84 True indel: indel (<= 5bp) 7634413 7634930 4763 5280 CM091762.1 scf7180002754484 99.61 True local misassembly 7636304 7637486 6041 7223 CM091762.1 scf7180002754484 99.92 True indel: indel (> 5bp) 7637851 7638464 7597 8210 CM091762.1 scf7180002754484 99.19 True indel: indel (> 5bp) 7638543 7639299 8298 9054 CM091762.1 scf7180002754484 99.21 True indel: indel (> 5bp) 7639308 7640081 9055 9828 CM091762.1 scf7180002754484 99.48 True indel: indel (<= 5bp) 7640082 7641878 9833 11629 CM091762.1 scf7180002754484 99.61 True local misassembly 7642765 7644268 12520 14023 CM091762.1 scf7180002754484 99.47 True local misassembly 7645258 7645919 14113 14774 CM091762.1 scf7180002754484 96.37 True local misassembly 7646539 7647118 15389 15968 CM091762.1 scf7180002754484 99.66 True local misassembly 7648396 7649020 17305 17929 CM091762.1 scf7180002754484 99.84 True fake: scaffold gap size wrong estimation (local) 7651878 7652408 19285 19815 CM091762.1 scf7180002754484 99.62 True fake: scaffold gap size wrong estimation (local) 7652728 7663191 19861 30312 CM091762.1 scf7180002754484 99.23 True fake: scaffold gap size wrong estimation (local) 7664183 7675060 31204 41775 CM091762.1 scf7180002754484 96.01 True fake: not a misassembly (possible transposable element) 15517894 15521592 45441 41843 CM091757.1 scf7180002754484 96.92 True fake: not a misassembly (possible transposable element) 7675680 7677285 45462 47072 CM091762.1 scf7180002754484 99.38 True fake: not a misassembly (possible transposable element) 15517051 15517984 48364 47432 CM091757.1 scf7180002754484 98.09 True fake: not a misassembly (possible transposable element) 7677699 7745343 48365 116007 CM091762.1 scf7180002754484 98.64 True indel: indel (<= 5bp) 7745417 7781444 116083 152201 CM091762.1 scf7180002754484 98.83 True local misassembly 7781869 7797610 152390 167956 CM091762.1 scf7180002754484 97.34 True local misassembly 7798479 7823437 168495 192960 CM091762.1 scf7180002754484 96.61 True local misassembly 7827434 7834988 193410 200948 CM091762.1 scf7180002754484 98.92 True indel: indel (> 5bp) 7835041 7840687 201011 206661 CM091762.1 scf7180002754484 99.59 True local misassembly 7841139 7852826 207421 218840 CM091762.1 scf7180002754484 97.11 True indel: indel (> 5bp) 7853172 8147874 219196 514037 CM091762.1 scf7180002754484 99.59 True indel: indel (> 5bp) 8147975 8211562 514123 576722 CM091762.1 scf7180002754484 97.53 True fake: not a misassembly (possible transposable element) 8652032 8653588 576723 578279 CM091767.1 scf7180002754484 99.05 True fake: not a misassembly (possible transposable element) 8211512 8317491 578356 684312 CM091762.1 scf7180002754484 99.66 True fake: scaffold gap size wrong estimation (local) 8317878 8380534 684865 745920 CM091762.1 scf7180002754484 96.61 True fake: scaffold gap size wrong estimation (local) 8380651 8481201 746019 846117 CM091762.1 scf7180002754484 98.86 True indel: indel (> 5bp) 8481379 8513301 846303 877770 CM091762.1 scf7180002754484 96.95 True translocation 3684510 3706322 877771 899575 CM091761.1 scf7180002754484 99.01 True fake: scaffold gap size wrong estimation (local) 3707636 3740516 900671 933020 CM091761.1 scf7180002754484 97.25 True translocation 2517805 2543925 933021 959140 CM091753.1 scf7180002754484 99.4 True local misassembly 2544127 2593274 959211 1008402 CM091753.1 scf7180002754484 98.69 True fake: scaffold gap size wrong estimation (local) 2593362 2603030 1008488 1018168 CM091753.1 scf7180002754484 99.27 True CONTIG scf7180002754484 1018168 misassembled 1199874 1233340 33418 1 CM091755.1 scf7180002754485 99.38 True fake: not a misassembly (possible transposable element) 18412162 18414666 39290 36807 CM091752.1 scf7180002754485 97.05 True fake: not a misassembly (possible transposable element) 1176723 1199711 62667 39825 CM091755.1 scf7180002754485 99.07 True local misassembly 1145902 1174764 106370 63284 CM091755.1 scf7180002754485 99.49 True fake: not a misassembly (possible transposable element) 17515659 17517082 111717 113140 CM091751.1 scf7180002754485 99.93 True fake: not a misassembly (possible transposable element) 1138751 1145951 120362 113161 CM091755.1 scf7180002754485 99.94 True fake: not a misassembly (possible transposable element) 17517262 17519549 120383 122670 CM091751.1 scf7180002754485 99.96 True fake: not a misassembly (possible transposable element) 1136302 1138164 124553 122691 CM091755.1 scf7180002754485 100.0 True translocation, scaffold gap is present 8187359 8188811 126026 124574 CM091767.1 scf7180002754485 100.0 True translocation, scaffold gap is present 17521841 17523578 126047 127784 CM091751.1 scf7180002754485 100.0 True translocation, scaffold gap is present 1133904 1135577 129478 127805 CM091755.1 scf7180002754485 99.94 True indel: indel (<= 5bp) 1128482 1133902 134899 129479 CM091755.1 scf7180002754485 99.98 True fake: scaffold gap size wrong estimation (extensive) 1127768 1128481 144855 144142 CM091755.1 scf7180002754485 100.0 True indel: indel (<= 5bp) 1125552 1127529 147073 145096 CM091755.1 scf7180002754485 100.0 True indel: indel (<= 5bp) 1122828 1125549 149795 147074 CM091755.1 scf7180002754485 99.93 True indel: indel (<= 5bp) 1122029 1122827 150596 149798 CM091755.1 scf7180002754485 100.0 True indel: indel (> 5bp) 1119848 1121982 152747 150613 CM091755.1 scf7180002754485 100.0 True translocation, scaffold gap is present 8169374 8176802 159913 152768 CM091767.1 scf7180002754485 95.86 True translocation, scaffold gap is present 1112245 1119515 167244 159934 CM091755.1 scf7180002754485 99.41 True CONTIG scf7180002754485 167244 misassembled 4174480 4176697 2233 15 CM091758.1 scf7180002754486 99.59 True fake: scaffold gap size wrong estimation (local) 4106899 4173681 69365 2522 CM091758.1 scf7180002754486 99.18 True indel: indel (> 5bp) 4038167 4106636 137998 69602 CM091758.1 scf7180002754486 99.45 True indel: indel (> 5bp) 3994717 4037743 181374 138396 CM091758.1 scf7180002754486 99.33 True indel: indel (> 5bp) 3933468 3994643 241894 181427 CM091758.1 scf7180002754486 98.22 True indel: indel (> 5bp) 3770176 3933360 402888 241966 CM091758.1 scf7180002754486 98.01 True translocation, scaffold gap is present 15704092 15712921 411742 402909 CM091753.1 scf7180002754486 99.28 True translocation, scaffold gap is present 8261921 8320081 470029 411859 CM091756.1 scf7180002754486 99.17 True translocation, scaffold gap is present 3359396 3770097 895476 470387 CM091758.1 scf7180002754486 95.1 True indel: indel (> 5bp) 3352696 3359353 902128 895486 CM091758.1 scf7180002754486 99.43 True indel: indel (> 5bp) 3306152 3352599 948380 902156 CM091758.1 scf7180002754486 98.71 True CONTIG scf7180002754486 949512 misassembled 6243228 6255511 1 12292 CM091753.1 scf7180002754487 99.12 True fake: scaffold gap size wrong estimation (local) 6255631 6298128 12402 54878 CM091753.1 scf7180002754487 99.34 True relocation, scaffold gap is present, inconsistency = -24557 6298118 6316821 79425 98122 CM091753.1 scf7180002754487 99.39 True relocation, scaffold gap is present, inconsistency = -18684 6316834 6332864 116819 132790 CM091753.1 scf7180002754487 99.25 True relocation, inconsistency = 38796 6371661 6465878 132791 227057 CM091753.1 scf7180002754487 99.45 True indel: indel (> 5bp) 6466078 6547883 227270 309148 CM091753.1 scf7180002754487 99.54 True relocation, scaffold gap is present, inconsistency = -18526 6548056 6553119 327847 332900 CM091753.1 scf7180002754487 99.31 True fake: scaffold gap size wrong estimation (local) 6553808 6598529 335721 380452 CM091753.1 scf7180002754487 99.43 True relocation, scaffold gap is present, inconsistency = -44767 6598527 6730446 425217 556746 CM091753.1 scf7180002754487 99.07 True fake: scaffold gap size wrong estimation (local) 6730708 6733130 559850 562296 CM091753.1 scf7180002754487 98.37 True fake: scaffold gap size wrong estimation (local) 6733151 6772362 562988 601554 CM091753.1 scf7180002754487 97.55 True fake: scaffold gap size wrong estimation (local) 6772400 6785143 605871 618570 CM091753.1 scf7180002754487 99.18 True indel: indel (<= 5bp) 6785252 6815790 618675 649022 CM091753.1 scf7180002754487 98.6 True fake: scaffold gap size wrong estimation (extensive) 6815808 6837224 658886 680337 CM091753.1 scf7180002754487 99.23 True fake: scaffold gap size wrong estimation (local) 6837260 6896596 682326 741671 CM091753.1 scf7180002754487 99.22 True fake: scaffold gap size wrong estimation (local) 6896896 6898983 742191 744281 CM091753.1 scf7180002754487 99.14 True CONTIG scf7180002754487 744281 misassembled 12726237 12727173 1147 211 CM091751.1 scf7180002754488 99.68 True indel: indel (> 5bp) 12725490 12726041 1876 1325 CM091751.1 scf7180002754488 100.0 True indel: indel (<= 5bp) 12724854 12725485 2508 1877 CM091751.1 scf7180002754488 96.52 True fake: scaffold gap size wrong estimation (local) 12719288 12723529 8442 4224 CM091751.1 scf7180002754488 99.24 True fake: scaffold gap size wrong estimation (local) 12690786 12718221 36241 8915 CM091751.1 scf7180002754488 98.06 True fake: scaffold gap size wrong estimation (local) 12665031 12690663 61573 36355 CM091751.1 scf7180002754488 97.66 True fake: scaffold gap size wrong estimation (local) 12656694 12664517 75204 67335 CM091751.1 scf7180002754488 99.15 True fake: scaffold gap size wrong estimation (local) 12654038 12655602 77610 76046 CM091751.1 scf7180002754488 98.47 True local misassembly 12651936 12653821 79496 77611 CM091751.1 scf7180002754488 99.89 True fake: scaffold gap size wrong estimation (local) 12636234 12651532 94838 79571 CM091751.1 scf7180002754488 99.28 True translocation, scaffold gap is present 8424229 8428788 100603 96044 CM091767.1 scf7180002754488 99.96 True fake: scaffold gap size wrong estimation (local) 8421907 8424536 106242 103568 CM091767.1 scf7180002754488 98.25 True translocation, scaffold gap is present 12633258 12636355 110084 106993 CM091751.1 scf7180002754488 99.61 True fake: scaffold gap size wrong estimation (local) 12631741 12633246 112696 111191 CM091751.1 scf7180002754488 99.93 True indel: indel (> 5bp) 12630881 12631729 113545 112697 CM091751.1 scf7180002754488 99.88 True indel: indel (<= 5bp) 12628710 12630880 115719 113549 CM091751.1 scf7180002754488 100.0 True indel: indel (<= 5bp) 12628111 12628709 116319 115721 CM091751.1 scf7180002754488 96.33 True local misassembly 12626508 12627879 117691 116320 CM091751.1 scf7180002754488 99.56 True indel: stretch of mismatches 12625184 12626376 119015 117823 CM091751.1 scf7180002754488 99.66 True local misassembly 12620490 12624529 123705 119666 CM091751.1 scf7180002754488 99.26 True local misassembly 12588746 12619918 154888 123706 CM091751.1 scf7180002754488 99.8 True relocation, scaffold gap is present, inconsistency = -28298 12561714 12588747 210240 183185 CM091751.1 scf7180002754488 99.49 True translocation 1505191 1511343 216389 210241 CM091759.1 scf7180002754488 99.67 True relocation, scaffold gap is present, inconsistency = -13152 1447838 1504935 286893 229797 CM091759.1 scf7180002754488 99.58 True relocation, scaffold gap is present, inconsistency = -45251 1436955 1447857 343009 332125 CM091759.1 scf7180002754488 99.61 True fake: scaffold gap size wrong estimation (local) 1395895 1437242 388716 347376 CM091759.1 scf7180002754488 99.54 True relocation, scaffold gap is present, inconsistency = -41265 1346753 1395851 479158 430025 CM091759.1 scf7180002754488 99.56 True fake: scaffold gap size wrong estimation (local) 1267699 1346325 563638 484887 CM091759.1 scf7180002754488 99.5 True fake: scaffold gap size wrong estimation (local) 1191703 1267449 639666 563849 CM091759.1 scf7180002754488 99.44 True indel: indel (<= 5bp) 1164076 1191648 667272 639719 CM091759.1 scf7180002754488 99.65 True relocation, scaffold gap is present, inconsistency = -55362 1199113 1199735 687602 686975 CM091759.1 scf7180002754488 99.23 True fake: scaffold gap size wrong estimation (local) 981600 1163745 904459 722171 CM091759.1 scf7180002754488 99.55 True fake: scaffold gap size wrong estimation (local) 923469 981545 965960 907832 CM091759.1 scf7180002754488 99.53 True relocation, scaffold gap is present, inconsistency = -42350 912362 923431 1019417 1008348 CM091759.1 scf7180002754488 99.66 True indel: indel (> 5bp) 884806 912259 1046967 1019461 CM091759.1 scf7180002754488 99.56 True relocation, scaffold gap is present, inconsistency = -17946 896120 896675 1053621 1053044 CM091759.1 scf7180002754488 99.57 True fake: scaffold gap size wrong estimation (local) 759164 884790 1190300 1064968 CM091759.1 scf7180002754488 99.3 True translocation, scaffold gap is present 6234433 6243286 1199311 1190478 CM091753.1 scf7180002754488 99.31 True translocation, scaffold gap is present 731252 759158 1233946 1206044 CM091759.1 scf7180002754488 99.4 True relocation, scaffold gap is present, inconsistency = -26831 694620 731057 1297480 1260972 CM091759.1 scf7180002754488 99.25 True relocation, scaffold gap is present, inconsistency = -36634 634855 694696 1393774 1334038 CM091759.1 scf7180002754488 99.17 True fake: scaffold gap size wrong estimation (local) 623731 634754 1404894 1393865 CM091759.1 scf7180002754488 99.37 True fake: scaffold gap size wrong estimation (local) 603536 620371 1424911 1408059 CM091759.1 scf7180002754488 99.64 True fake: scaffold gap size wrong estimation (local) 584270 603285 1448424 1429371 CM091759.1 scf7180002754488 99.58 True fake: scaffold gap size wrong estimation (local) 539743 583880 1493012 1448821 CM091759.1 scf7180002754488 99.61 True local misassembly 452724 534773 1574970 1493013 CM091759.1 scf7180002754488 99.21 True fake: scaffold gap size wrong estimation (local) 414620 452605 1630034 1575072 CM091759.1 scf7180002754488 95.59 True local misassembly 347555 414484 1697162 1630312 CM091759.1 scf7180002754488 99.2 True fake: scaffold gap size wrong estimation (local) 345194 347554 1701921 1699561 CM091759.1 scf7180002754488 99.92 True local misassembly 335956 341498 1707470 1701922 CM091759.1 scf7180002754488 99.51 True fake: scaffold gap size wrong estimation (local) 289751 335524 1753729 1707934 CM091759.1 scf7180002754488 99.62 True fake: scaffold gap size wrong estimation (local) 189534 289397 1859930 1759973 CM091759.1 scf7180002754488 99.59 True fake: scaffold gap size wrong estimation (extensive) 184011 189635 1874890 1869262 CM091759.1 scf7180002754488 99.62 True CONTIG scf7180002754488 1874890 misassembled 3614204 3615053 1644 795 CM091759.1 scf7180002754489 99.65 True indel: indel (<= 5bp) 3613323 3613872 2528 1979 CM091759.1 scf7180002754489 99.82 True indel: indel (<= 5bp) 3611477 3613322 4375 2530 CM091759.1 scf7180002754489 99.46 True indel: indel (<= 5bp) 3610407 3611347 5442 4502 CM091759.1 scf7180002754489 99.68 True indel: indel (<= 5bp) 3608012 3610404 7835 5443 CM091759.1 scf7180002754489 99.92 True fake: scaffold gap size wrong estimation (local) 3607059 3607563 12267 11763 CM091759.1 scf7180002754489 100.0 True indel: indel (<= 5bp) 3605922 3607058 13405 12269 CM091759.1 scf7180002754489 100.0 True fake: scaffold gap size wrong estimation (local) 3599210 3605828 20097 13488 CM091759.1 scf7180002754489 99.13 True translocation, scaffold gap is present 1689624 1691166 21660 20118 CM091762.1 scf7180002754489 99.42 True fake: scaffold gap size wrong estimation (local) 1685630 1689481 25667 21816 CM091762.1 scf7180002754489 99.82 True indel: indel (<= 5bp) 1683790 1685629 27508 25669 CM091762.1 scf7180002754489 99.89 True indel: indel (<= 5bp) 1682736 1683788 28561 27509 CM091762.1 scf7180002754489 99.53 True indel: indel (<= 5bp) 1681667 1682734 29629 28562 CM091762.1 scf7180002754489 99.91 True local misassembly 1675725 1681015 35574 30284 CM091762.1 scf7180002754489 99.89 True indel: indel (<= 5bp) 1673095 1675723 38203 35575 CM091762.1 scf7180002754489 99.96 True indel: indel (<= 5bp) 1672040 1673094 39259 38205 CM091762.1 scf7180002754489 100.0 True translocation, scaffold gap is present 3596699 3598823 42573 40449 CM091759.1 scf7180002754489 99.58 True indel: indel (<= 5bp) 3594936 3596268 44334 43002 CM091759.1 scf7180002754489 99.47 True indel: indel (> 5bp) 3593766 3594935 45512 44343 CM091759.1 scf7180002754489 99.66 True local misassembly 3591297 3593214 47984 46067 CM091759.1 scf7180002754489 99.9 True indel: indel (<= 5bp) 3590376 3591296 48906 47986 CM091759.1 scf7180002754489 99.67 True indel: indel (<= 5bp) 3589309 3589937 49971 49343 CM091759.1 scf7180002754489 99.52 True indel: indel (<= 5bp) 3588169 3589308 51112 49973 CM091759.1 scf7180002754489 99.74 True indel: indel (<= 5bp) 3587180 3588168 52102 51114 CM091759.1 scf7180002754489 99.49 True indel: indel (<= 5bp) 3586478 3587179 52806 52105 CM091759.1 scf7180002754489 99.86 True indel: stretch of mismatches 3585374 3586283 53910 53001 CM091759.1 scf7180002754489 99.89 True indel: indel (<= 5bp) 3581837 3585036 57448 54249 CM091759.1 scf7180002754489 99.81 True indel: indel (> 5bp) 3581267 3581836 58026 57457 CM091759.1 scf7180002754489 100.0 True translocation, scaffold gap is present 1668572 1670642 60678 58608 CM091762.1 scf7180002754489 99.61 True local misassembly 1667186 1668063 62069 61192 CM091762.1 scf7180002754489 99.89 True indel: indel (<= 5bp) 1666615 1667152 62642 62105 CM091762.1 scf7180002754489 100.0 True local misassembly 1665024 1665832 64236 63428 CM091762.1 scf7180002754489 99.75 True local misassembly 1662228 1663688 67056 65596 CM091762.1 scf7180002754489 99.93 True translocation, scaffold gap is present 3578047 3581266 71038 67819 CM091759.1 scf7180002754489 99.84 True indel: indel (<= 5bp) 3576684 3578046 72402 71040 CM091759.1 scf7180002754489 99.63 True indel: indel (<= 5bp) 3575621 3576680 73462 72403 CM091759.1 scf7180002754489 98.96 True indel: indel (<= 5bp) 3568883 3575238 80202 73847 CM091759.1 scf7180002754489 99.89 True indel: indel (<= 5bp) 3566353 3568473 82736 80616 CM091759.1 scf7180002754489 99.95 True indel: indel (<= 5bp) 3565499 3566128 83589 82960 CM091759.1 scf7180002754489 99.68 True indel: indel (<= 5bp) 3564414 3565135 84675 83954 CM091759.1 scf7180002754489 99.17 True local misassembly 3561207 3563369 87884 85722 CM091759.1 scf7180002754489 99.82 True indel: indel (<= 5bp) 3560575 3561205 88515 87885 CM091759.1 scf7180002754489 99.37 True indel: indel (> 5bp) 3559563 3560506 89575 88632 CM091759.1 scf7180002754489 99.58 True translocation, scaffold gap is present 1652694 1660985 98257 89943 CM091762.1 scf7180002754489 99.15 True indel: indel (> 5bp) 1611733 1652593 139521 98347 CM091762.1 scf7180002754489 98.9 True translocation, scaffold gap is present 3557544 3558065 140122 139601 CM091759.1 scf7180002754489 99.81 True indel: indel (<= 5bp) 3555854 3557412 141814 140256 CM091759.1 scf7180002754489 98.85 True translocation, scaffold gap is present 1547959 1611720 235306 171475 CM091762.1 scf7180002754489 99.71 True indel: indel (> 5bp) 1326604 1547764 448764 235460 CM091762.1 scf7180002754489 96.05 True indel: indel (<= 5bp) 909699 1326537 865624 448834 CM091762.1 scf7180002754489 99.52 True indel: indel (> 5bp) 907758 909569 867483 865672 CM091762.1 scf7180002754489 99.67 True local misassembly 906715 907334 868434 867815 CM091762.1 scf7180002754489 99.68 True indel: indel (<= 5bp) 905071 906404 870080 868747 CM091762.1 scf7180002754489 99.93 True indel: indel (<= 5bp) 904334 904876 870818 870276 CM091762.1 scf7180002754489 99.45 True indel: indel (<= 5bp) 902379 903968 872775 871186 CM091762.1 scf7180002754489 99.81 True indel: indel (> 5bp) 898513 902321 876584 872776 CM091762.1 scf7180002754489 99.92 True indel: indel (<= 5bp) 897643 898512 877455 876586 CM091762.1 scf7180002754489 100.0 True indel: indel (<= 5bp) 896314 897642 878785 877457 CM091762.1 scf7180002754489 100.0 True indel: indel (<= 5bp) 894571 895855 880527 879243 CM091762.1 scf7180002754489 100.0 True indel: indel (<= 5bp) 891813 894570 883286 880529 CM091762.1 scf7180002754489 99.71 True local misassembly 886447 888108 884948 883287 CM091762.1 scf7180002754489 99.88 True indel: indel (> 5bp) 881191 886429 890187 884949 CM091762.1 scf7180002754489 99.81 True indel: indel (<= 5bp) 880063 881190 891316 890189 CM091762.1 scf7180002754489 100.0 True indel: indel (<= 5bp) 875779 880062 895601 891318 CM091762.1 scf7180002754489 99.86 True indel: indel (<= 5bp) 645438 875687 1125620 895696 CM091762.1 scf7180002754489 99.45 True indel: indel (<= 5bp) 605154 645406 1165992 1125655 CM091762.1 scf7180002754489 99.48 True CONTIG scf7180002754489 1165992 misassembled 7528818 7531529 1 2712 CM091764.1 scf7180002754490 100.0 True indel: indel (<= 5bp) 7531540 7548151 2721 18556 CM091764.1 scf7180002754490 95.19 True local misassembly 7548750 7634827 19455 105520 CM091764.1 scf7180002754490 99.73 True fake: scaffold gap size wrong estimation (local) 7634979 7716459 105656 186137 CM091764.1 scf7180002754490 98.47 True fake: scaffold gap size wrong estimation (local) 7716632 7767554 186266 237152 CM091764.1 scf7180002754490 99.33 True fake: scaffold gap size wrong estimation (local) 7767684 7848027 237301 316978 CM091764.1 scf7180002754490 98.31 True fake: scaffold gap size wrong estimation (local) 7848898 7895430 317090 363875 CM091764.1 scf7180002754490 99.07 True fake: scaffold gap size wrong estimation (local) 7895524 7928369 363966 395729 CM091764.1 scf7180002754490 95.37 True fake: scaffold gap size wrong estimation (local) 7928480 7935801 395832 403169 CM091764.1 scf7180002754490 99.19 True fake: scaffold gap size wrong estimation (local) 7935914 7977698 403284 445149 CM091764.1 scf7180002754490 99.4 True fake: scaffold gap size wrong estimation (local) 7978522 7995697 445650 462878 CM091764.1 scf7180002754490 99.02 True fake: scaffold gap size wrong estimation (local) 7995804 8003705 462998 470886 CM091764.1 scf7180002754490 99.24 True fake: scaffold gap size wrong estimation (local) 8005643 8038925 472616 505049 CM091764.1 scf7180002754490 96.91 True fake: scaffold gap size wrong estimation (local) 8040479 8041114 505627 506262 CM091764.1 scf7180002754490 100.0 True indel: stretch of mismatches 8041510 8044342 506658 509490 CM091764.1 scf7180002754490 99.65 True indel: indel (<= 5bp) 8044343 8045382 509492 510531 CM091764.1 scf7180002754490 99.81 True fake: scaffold gap size wrong estimation (local) 8045673 8046866 514629 515822 CM091764.1 scf7180002754490 100.0 True indel: indel (<= 5bp) 8046871 8047781 515829 516739 CM091764.1 scf7180002754490 99.78 True indel: indel (<= 5bp) 8047782 8050265 516741 519224 CM091764.1 scf7180002754490 99.68 True fake: scaffold gap size wrong estimation (local) 8050479 8051268 519464 520253 CM091764.1 scf7180002754490 99.24 True fake: scaffold gap size wrong estimation (local) 8051269 8053291 520278 522300 CM091764.1 scf7180002754490 99.95 True fake: scaffold gap size wrong estimation (local) 8053716 8610308 522752 1080944 CM091764.1 scf7180002754490 99.06 True fake: scaffold gap size wrong estimation (local) 8611203 8644960 1080965 1114612 CM091764.1 scf7180002754490 98.77 True indel: indel (<= 5bp) 8645050 8715032 1114701 1182376 CM091764.1 scf7180002754490 95.37 True fake: scaffold gap size wrong estimation (local) 8715231 8748858 1182534 1216197 CM091764.1 scf7180002754490 99.84 True indel: indel (> 5bp) 8749007 8854283 1216284 1322446 CM091764.1 scf7180002754490 98.25 True fake: scaffold gap size wrong estimation (local) 8855846 8857147 1323245 1324546 CM091764.1 scf7180002754490 98.31 True fake: scaffold gap size wrong estimation (local) 8857524 8858103 1324938 1325517 CM091764.1 scf7180002754490 98.62 True fake: scaffold gap size wrong estimation (local) 8858806 8860696 1326172 1328062 CM091764.1 scf7180002754490 99.74 True fake: scaffold gap size wrong estimation (local) 8860843 8882027 1328184 1349465 CM091764.1 scf7180002754490 99.52 True fake: scaffold gap size wrong estimation (local) 8882636 8896013 1349689 1363147 CM091764.1 scf7180002754490 99.42 True fake: scaffold gap size wrong estimation (local) 8896655 8945088 1363817 1411766 CM091764.1 scf7180002754490 98.56 True fake: scaffold gap size wrong estimation (local) 8945246 8963234 1411908 1429898 CM091764.1 scf7180002754490 99.33 True indel: indel (> 5bp) 8963258 9112045 1429946 1579052 CM091764.1 scf7180002754490 99.38 True fake: scaffold gap size wrong estimation (local) 9112105 9134851 1579125 1601722 CM091764.1 scf7180002754490 98.2 True fake: scaffold gap size wrong estimation (local) 9136646 9224808 1603341 1691635 CM091764.1 scf7180002754490 99.16 True fake: scaffold gap size wrong estimation (local) 9224918 9271549 1695184 1741868 CM091764.1 scf7180002754490 99.65 True translocation, scaffold gap is present 6538450 6550747 1762319 1774609 CM091751.1 scf7180002754490 99.59 True translocation, scaffold gap is present 9271462 9310398 1774703 1813669 CM091764.1 scf7180002754490 99.61 True translocation, scaffold gap is present 6551095 6571393 1813784 1834088 CM091751.1 scf7180002754490 99.44 True translocation, scaffold gap is present 9311093 9311676 1834750 1835333 CM091764.1 scf7180002754490 99.49 True indel: indel (> 5bp) 9311901 9312875 1835490 1836464 CM091764.1 scf7180002754490 98.87 True local misassembly 9313711 9314912 1837300 1838501 CM091764.1 scf7180002754490 99.92 True indel: indel (<= 5bp) 9314913 9317568 1838503 1841158 CM091764.1 scf7180002754490 99.66 True indel: indel (> 5bp) 9317873 9319080 1841450 1842657 CM091764.1 scf7180002754490 99.83 True indel: indel (<= 5bp) 9319312 9320092 1842892 1843672 CM091764.1 scf7180002754490 100.0 True local misassembly 9321499 9322065 1845077 1845643 CM091764.1 scf7180002754490 99.82 True local misassembly 9322568 9324392 1846158 1847982 CM091764.1 scf7180002754490 99.67 True indel: indel (> 5bp) 9324875 9327198 1848459 1850782 CM091764.1 scf7180002754490 99.4 True indel: indel (<= 5bp) 9327200 9328346 1850783 1851929 CM091764.1 scf7180002754490 99.83 True indel: indel (<= 5bp) 9328347 9329500 1851934 1853087 CM091764.1 scf7180002754490 99.39 True indel: indel (<= 5bp) 9329502 9330979 1853088 1854565 CM091764.1 scf7180002754490 99.66 True relocation, scaffold gap is present, inconsistency = -10179 9330980 9333189 1864745 1866954 CM091764.1 scf7180002754490 99.91 True indel: indel (<= 5bp) 9333549 9334127 1867312 1867890 CM091764.1 scf7180002754490 99.83 True indel: indel (<= 5bp) 9334128 9335477 1867892 1869241 CM091764.1 scf7180002754490 99.93 True indel: stretch of mismatches 9335669 9336232 1869433 1869996 CM091764.1 scf7180002754490 99.65 True indel: indel (<= 5bp) 9336233 9337178 1869998 1870943 CM091764.1 scf7180002754490 99.58 True indel: indel (<= 5bp) 9337180 9338016 1870944 1871780 CM091764.1 scf7180002754490 100.0 True indel: indel (<= 5bp) 9338018 9338956 1871781 1872719 CM091764.1 scf7180002754490 99.47 True indel: indel (<= 5bp) 9338958 9340765 1872720 1874527 CM091764.1 scf7180002754490 99.89 True indel: indel (<= 5bp) 9340766 9342416 1874529 1876179 CM091764.1 scf7180002754490 99.88 True indel: indel (<= 5bp) 9342417 9343258 1876181 1877022 CM091764.1 scf7180002754490 99.76 True indel: indel (<= 5bp) 9343259 9345105 1877025 1878871 CM091764.1 scf7180002754490 99.95 True indel: indel (<= 5bp) 9345108 9345727 1878872 1879491 CM091764.1 scf7180002754490 100.0 True indel: indel (<= 5bp) 9345992 9347692 1879753 1881453 CM091764.1 scf7180002754490 99.41 True indel: indel (> 5bp) 9348110 9349208 1881865 1882963 CM091764.1 scf7180002754490 99.55 True local misassembly 9349854 9352225 1883613 1885984 CM091764.1 scf7180002754490 99.66 True translocation, scaffold gap is present 6582011 6637503 1886614 1942104 CM091751.1 scf7180002754490 99.59 True translocation, scaffold gap is present 9353277 9356264 1942125 1945112 CM091764.1 scf7180002754490 99.67 True indel: indel (<= 5bp) 9356267 9360235 1945113 1949081 CM091764.1 scf7180002754490 99.82 True indel: indel (<= 5bp) 9360383 9361514 1949228 1950359 CM091764.1 scf7180002754490 99.38 True indel: indel (<= 5bp) 9361520 9363142 1950360 1951982 CM091764.1 scf7180002754490 99.69 True indel: indel (<= 5bp) 9363143 9364696 1951984 1953537 CM091764.1 scf7180002754490 99.55 True indel: indel (<= 5bp) 9364997 9365774 1953836 1954613 CM091764.1 scf7180002754490 99.49 True indel: indel (> 5bp) 9366018 9368337 1954820 1957139 CM091764.1 scf7180002754490 99.74 True indel: indel (<= 5bp) 9368338 9369028 1957141 1957831 CM091764.1 scf7180002754490 99.57 True indel: indel (<= 5bp) 9369029 9371409 1957833 1960213 CM091764.1 scf7180002754490 99.66 True indel: indel (<= 5bp) 9371411 9372799 1960214 1961602 CM091764.1 scf7180002754490 99.64 True indel: indel (> 5bp) 9373092 9375059 1961912 1963879 CM091764.1 scf7180002754490 99.64 True local misassembly 9375573 9376363 1964397 1965187 CM091764.1 scf7180002754490 99.62 True indel: indel (<= 5bp) 9376367 9377082 1965188 1965903 CM091764.1 scf7180002754490 99.58 True indel: indel (<= 5bp) 9377083 9379674 1965905 1968496 CM091764.1 scf7180002754490 99.61 True indel: indel (<= 5bp) 9379676 9381922 1968497 1970743 CM091764.1 scf7180002754490 99.69 True indel: indel (<= 5bp) 9381923 9386040 1970745 1974862 CM091764.1 scf7180002754490 99.73 True indel: indel (<= 5bp) 9386043 9387448 1974863 1976268 CM091764.1 scf7180002754490 99.72 True indel: indel (<= 5bp) 9387449 9388181 1976270 1977002 CM091764.1 scf7180002754490 99.73 True indel: indel (<= 5bp) 9388182 9389004 1977004 1977826 CM091764.1 scf7180002754490 99.76 True indel: indel (<= 5bp) 9389005 9390010 1977832 1978837 CM091764.1 scf7180002754490 99.11 True indel: indel (<= 5bp) 9390011 9390570 1978839 1979398 CM091764.1 scf7180002754490 99.64 True indel: indel (<= 5bp) 9390572 9391999 1979399 1980826 CM091764.1 scf7180002754490 99.86 True fake: scaffold gap size wrong estimation (extensive) 9392234 9393350 1990234 1991350 CM091764.1 scf7180002754490 99.28 True indel: indel (<= 5bp) 9393352 9394889 1991351 1992888 CM091764.1 scf7180002754490 99.93 True indel: indel (<= 5bp) 9394976 9395480 1992977 1993481 CM091764.1 scf7180002754490 100.0 True indel: indel (> 5bp) 9395944 9396603 1993936 1994595 CM091764.1 scf7180002754490 100.0 True local misassembly 9397106 9399750 1995101 1997745 CM091764.1 scf7180002754490 99.62 True indel: indel (> 5bp) 9399758 9402807 1997746 2000795 CM091764.1 scf7180002754490 99.51 True indel: indel (> 5bp) 9402808 9403903 2000804 2001899 CM091764.1 scf7180002754490 99.73 True indel: indel (> 5bp) 9403915 9405448 2001919 2003452 CM091764.1 scf7180002754490 99.74 True indel: indel (<= 5bp) 9405452 9408237 2003453 2006238 CM091764.1 scf7180002754490 98.64 True indel: indel (<= 5bp) 9408672 9409207 2006675 2007210 CM091764.1 scf7180002754490 99.44 True indel: indel (<= 5bp) 9409208 9409882 2007213 2007887 CM091764.1 scf7180002754490 99.41 True indel: indel (> 5bp) 9409895 9411425 2007888 2009418 CM091764.1 scf7180002754490 99.74 True indel: indel (<= 5bp) 9411426 9415177 2009421 2013172 CM091764.1 scf7180002754490 99.47 True indel: indel (<= 5bp) 9415178 9417303 2013176 2015301 CM091764.1 scf7180002754490 99.67 True indel: indel (<= 5bp) 9417305 9418691 2015302 2016688 CM091764.1 scf7180002754490 99.86 True indel: indel (<= 5bp) 9418694 9420412 2016689 2018407 CM091764.1 scf7180002754490 99.88 True indel: indel (<= 5bp) 9420414 9421010 2018408 2019004 CM091764.1 scf7180002754490 99.33 True translocation, scaffold gap is present 6646520 6682761 2019032 2055283 CM091751.1 scf7180002754490 99.47 True translocation, scaffold gap is present 9421031 9446160 2055304 2080439 CM091764.1 scf7180002754490 99.69 True translocation, scaffold gap is present 6682942 6693272 2080460 2090787 CM091751.1 scf7180002754490 99.33 True relocation, inconsistency = 7427 6700906 6702914 2090994 2093000 CM091751.1 scf7180002754490 99.2 True indel: indel (> 5bp) 6702922 6710760 2093046 2100817 CM091751.1 scf7180002754490 97.84 True fake: scaffold gap size wrong estimation (local) 6710851 6798681 2100901 2188693 CM091751.1 scf7180002754490 99.17 True indel: indel (> 5bp) 6798886 6951503 2188925 2340586 CM091751.1 scf7180002754490 98.42 True CONTIG scf7180002754490 2340718 misassembled 9228331 9244518 16223 12 CM091765.1 scf7180002754491 99.73 True fake: scaffold gap size wrong estimation (local) 9072641 9228213 171388 16315 CM091765.1 scf7180002754491 99.28 True fake: scaffold gap size wrong estimation (local) 8945627 9072511 296821 171486 CM091765.1 scf7180002754491 97.78 True indel: indel (<= 5bp) 8914145 8945555 328375 296890 CM091765.1 scf7180002754491 99.29 True indel: indel (> 5bp) 8641060 8914126 601736 328387 CM091765.1 scf7180002754491 99.26 True translocation 5589862 5930466 601769 941639 CM091762.1 scf7180002754491 99.22 True indel: indel (> 5bp) 5930759 5952529 941940 963717 CM091762.1 scf7180002754491 99.35 True translocation 10599105 10835447 1199670 963718 CM091751.1 scf7180002754491 99.36 True indel: indel (> 5bp) 10394468 10599062 1401332 1199723 CM091751.1 scf7180002754491 98.11 True relocation, scaffold gap is present, inconsistency = 62753 10328146 10331694 1404903 1401353 CM091751.1 scf7180002754491 99.8 True fake: scaffold gap size wrong estimation (local) 10326555 10327286 1406200 1405487 CM091751.1 scf7180002754491 96.45 True indel: indel (> 5bp) 10289940 10326220 1442757 1406456 CM091751.1 scf7180002754491 99.61 True relocation, scaffold gap is present, inconsistency = -152428 10345455 10393825 1539650 1491300 CM091751.1 scf7180002754491 99.74 True relocation, scaffold gap is present, inconsistency = 55512 10247294 10289903 1582166 1539690 CM091751.1 scf7180002754491 99.22 True indel: indel (> 5bp) 10225821 10247222 1603656 1582246 CM091751.1 scf7180002754491 99.55 True relocation, scaffold gap is present, inconsistency = -152541 10345075 10345637 1636943 1636381 CM091751.1 scf7180002754491 98.76 True indel: indel (<= 5bp) 10344280 10345073 1637737 1636944 CM091751.1 scf7180002754491 99.12 True fake: scaffold gap size wrong estimation (local) 10342633 10343502 1639235 1638366 CM091751.1 scf7180002754491 99.66 True indel: indel (<= 5bp) 10342017 10342630 1639849 1639236 CM091751.1 scf7180002754491 99.67 True fake: scaffold gap size wrong estimation (local) 10331673 10341908 1650177 1639940 CM091751.1 scf7180002754491 99.5 True relocation, scaffold gap is present, inconsistency = 105830 10171072 10225822 1704959 1650198 CM091751.1 scf7180002754491 99.55 True CONTIG scf7180002754491 1704959 misassembled 340011 436103 1 96176 CM091761.1 scf7180002754492 99.77 True fake: scaffold gap size wrong estimation (local) 436393 446593 96483 106713 CM091761.1 scf7180002754492 99.62 True fake: scaffold gap size wrong estimation (local) 447095 454963 106837 114708 CM091761.1 scf7180002754492 99.68 True fake: scaffold gap size wrong estimation (local) 455105 748922 114848 407898 CM091761.1 scf7180002754492 99.56 True fake: scaffold gap size wrong estimation (local) 749126 786387 408195 445529 CM091761.1 scf7180002754492 99.88 True fake: scaffold gap size wrong estimation (local) 787733 796010 446347 454643 CM091761.1 scf7180002754492 99.92 True fake: scaffold gap size wrong estimation (local) 796193 1048366 454781 703917 CM091761.1 scf7180002754492 98.55 True fake: scaffold gap size wrong estimation (local) 1067928 1070141 722809 725022 CM091761.1 scf7180002754492 99.77 True relocation, scaffold gap is present, inconsistency = -21884 1048279 1063785 725044 740543 CM091761.1 scf7180002754492 99.9 True local misassembly 1064118 1067918 740744 744544 CM091761.1 scf7180002754492 99.2 True translocation 10896811 10903788 744545 751523 CM091765.1 scf7180002754492 99.93 True indel: indel (> 5bp) 10903997 10909224 751683 756909 CM091765.1 scf7180002754492 99.94 True translocation, scaffold gap is present 1070175 1082085 756930 768842 CM091761.1 scf7180002754492 99.77 True fake: not a misassembly (possible transposable element) 10909415 10913770 768863 773218 CM091765.1 scf7180002754492 99.95 True fake: not a misassembly (possible transposable element) 1083732 1092111 773239 781623 CM091761.1 scf7180002754492 99.83 True translocation 2463077 2860793 781919 1178183 CM091756.1 scf7180002754492 98.63 True fake: scaffold gap size wrong estimation (local) 2860787 2889802 1178222 1207470 CM091756.1 scf7180002754492 98.6 True CONTIG scf7180002754492 1207862 misassembled 4547769 4671342 1 123564 CM091755.1 scf7180002754493 99.44 True indel: indel (> 5bp) 4671416 4844041 123608 296291 CM091755.1 scf7180002754493 98.24 True fake: scaffold gap size wrong estimation (local) 4844639 4964224 296335 416659 CM091755.1 scf7180002754493 98.03 True fake: scaffold gap size wrong estimation (local) 4966010 4967144 418700 419834 CM091755.1 scf7180002754493 99.82 True local misassembly 4971443 4972281 419835 420673 CM091755.1 scf7180002754493 99.88 True indel: indel (<= 5bp) 4972284 4975075 420674 423465 CM091755.1 scf7180002754493 99.71 True indel: indel (<= 5bp) 4975076 4975697 423467 424088 CM091755.1 scf7180002754493 99.04 True translocation, scaffold gap is present 3900132 3966287 490104 424109 CM091753.1 scf7180002754493 99.58 True local misassembly 3875363 3899569 515038 490841 CM091753.1 scf7180002754493 99.67 True fake: scaffold gap size wrong estimation (local) 3858851 3875211 531533 515185 CM091753.1 scf7180002754493 99.21 True indel: indel (> 5bp) 3800664 3858774 589581 531632 CM091753.1 scf7180002754493 99.01 True fake: scaffold gap size wrong estimation (local) 3744543 3800353 645763 589876 CM091753.1 scf7180002754493 99.6 True indel: indel (> 5bp) 3621665 3744427 767844 645809 CM091753.1 scf7180002754493 99.03 True translocation, scaffold gap is present 2923779 2931234 775335 767865 CM091766.1 scf7180002754493 99.25 True indel: indel (<= 5bp) 2900253 2923713 798626 775399 CM091766.1 scf7180002754493 98.12 True translocation, scaffold gap is present 3594239 3621458 826429 799245 CM091753.1 scf7180002754493 99.31 True local misassembly 3583098 3592493 836014 826619 CM091753.1 scf7180002754493 99.84 True local misassembly 3582129 3582827 836713 836015 CM091753.1 scf7180002754493 98.28 True CONTIG scf7180002754493 837979 misassembled 7119542 7132587 1 13113 CM091759.1 scf7180002754494 98.73 True translocation, scaffold gap is present 7657830 7870914 226501 13230 CM091766.1 scf7180002754494 99.47 True indel: indel (> 5bp) 7531991 7657752 351916 226541 CM091766.1 scf7180002754494 99.14 True fake: scaffold gap size wrong estimation (extensive) 7507342 7532166 384314 359759 CM091766.1 scf7180002754494 98.21 True fake: scaffold gap size wrong estimation (local) 7417488 7506456 474333 385300 CM091766.1 scf7180002754494 99.48 True translocation, scaffold gap is present 11332682 11335319 476991 474354 CM091761.1 scf7180002754494 99.92 True fake: scaffold gap size wrong estimation (local) 11330419 11332596 479608 477425 CM091761.1 scf7180002754494 99.45 True fake: scaffold gap size wrong estimation (local) 11326857 11329029 481828 479649 CM091761.1 scf7180002754494 99.4 True local misassembly 11329075 11329605 482802 482271 CM091761.1 scf7180002754494 99.62 True translocation, scaffold gap is present 7415630 7417498 484691 482823 CM091766.1 scf7180002754494 99.36 True fake: scaffold gap size wrong estimation (local) 7414419 7415629 488140 486930 CM091766.1 scf7180002754494 99.67 True indel: indel (<= 5bp) 7412676 7414418 489884 488142 CM091766.1 scf7180002754494 99.77 True indel: indel (> 5bp) 7410556 7412669 491998 489885 CM091766.1 scf7180002754494 99.39 True indel: indel (<= 5bp) 7408242 7410553 494310 491999 CM091766.1 scf7180002754494 99.65 True fake: scaffold gap size wrong estimation (local) 7406247 7408102 502755 500900 CM091766.1 scf7180002754494 99.62 True indel: indel (<= 5bp) 7404801 7406246 504202 502757 CM091766.1 scf7180002754494 99.72 True indel: indel (<= 5bp) 7401802 7404799 507200 504203 CM091766.1 scf7180002754494 99.67 True indel: stretch of mismatches 7400851 7401773 508151 507229 CM091766.1 scf7180002754494 99.67 True indel: indel (<= 5bp) 7400144 7400849 508857 508152 CM091766.1 scf7180002754494 99.58 True indel: indel (<= 5bp) 7399554 7400143 509448 508859 CM091766.1 scf7180002754494 99.66 True indel: indel (<= 5bp) 7397166 7399553 511837 509450 CM091766.1 scf7180002754494 99.87 True indel: indel (> 5bp) 7396110 7397157 512885 511838 CM091766.1 scf7180002754494 99.9 True indel: indel (<= 5bp) 7393147 7395692 515847 513302 CM091766.1 scf7180002754494 99.96 True indel: indel (<= 5bp) 7392186 7392863 516810 516133 CM091766.1 scf7180002754494 99.71 True indel: indel (<= 5bp) 7391481 7392185 517516 516812 CM091766.1 scf7180002754494 99.57 True translocation, scaffold gap is present 11316288 11317961 519816 518143 CM091761.1 scf7180002754494 99.46 True indel: indel (> 5bp) 11315754 11316287 520362 519829 CM091761.1 scf7180002754494 96.44 True fake: scaffold gap size wrong estimation (local) 11311869 11313088 522554 521333 CM091761.1 scf7180002754494 98.98 True fake: scaffold gap size wrong estimation (local) 11306530 11311777 527903 522645 CM091761.1 scf7180002754494 98.3 True indel: indel (> 5bp) 11295924 11306446 538279 527971 CM091761.1 scf7180002754494 96.22 True translocation, scaffold gap is present 7388029 7390329 541094 538794 CM091766.1 scf7180002754494 99.91 True indel: indel (<= 5bp) 7386669 7388028 542455 541096 CM091766.1 scf7180002754494 99.78 True indel: indel (<= 5bp) 7384790 7386668 544335 542457 CM091766.1 scf7180002754494 99.52 True translocation, scaffold gap is present 11286582 11295159 553555 545012 CM091761.1 scf7180002754494 98.95 True translocation, scaffold gap is present 7383719 7384789 554646 553576 CM091766.1 scf7180002754494 99.91 True indel: indel (<= 5bp) 7382843 7383717 555521 554647 CM091766.1 scf7180002754494 99.77 True indel: indel (<= 5bp) 7381903 7382769 556463 555597 CM091766.1 scf7180002754494 99.77 True indel: indel (<= 5bp) 7381379 7381902 556988 556465 CM091766.1 scf7180002754494 99.81 True indel: stretch of mismatches 7380428 7381284 557939 557083 CM091766.1 scf7180002754494 99.42 True indel: stretch of mismatches 7377937 7380417 560430 557950 CM091766.1 scf7180002754494 99.8 True indel: indel (<= 5bp) 7376866 7377936 561502 560432 CM091766.1 scf7180002754494 99.91 True translocation, scaffold gap is present 11281986 11286467 566470 561950 CM091761.1 scf7180002754494 99.05 True fake: scaffold gap size wrong estimation (local) 11278896 11280975 569366 567287 CM091761.1 scf7180002754494 99.95 True indel: indel (> 5bp) 11275872 11278895 572397 569374 CM091761.1 scf7180002754494 99.9 True fake: scaffold gap size wrong estimation (local) 11255258 11274977 592436 572739 CM091761.1 scf7180002754494 99.74 True relocation, scaffold gap is present, inconsistency = -16763 11086737 11255229 775880 609228 CM091761.1 scf7180002754494 98.59 True indel: stretch of mismatches 10817580 11086655 1043867 775962 CM091761.1 scf7180002754494 98.84 True indel: indel (<= 5bp) 10815947 10817265 1045497 1044179 CM091761.1 scf7180002754494 99.39 True local misassembly 10813679 10815130 1047768 1046317 CM091761.1 scf7180002754494 99.59 True local misassembly 10811770 10813031 1049681 1048420 CM091761.1 scf7180002754494 99.6 True indel: indel (<= 5bp) 10810479 10811769 1050973 1049683 CM091761.1 scf7180002754494 99.69 True indel: indel (<= 5bp) 10806467 10810478 1054986 1050975 CM091761.1 scf7180002754494 99.45 True local misassembly 10804513 10805534 1056970 1055949 CM091761.1 scf7180002754494 99.61 True indel: indel (<= 5bp) 10803880 10804512 1057604 1056972 CM091761.1 scf7180002754494 99.21 True local misassembly 10799987 10802929 1061496 1058554 CM091761.1 scf7180002754494 99.63 True indel: indel (<= 5bp) 10798767 10799986 1062717 1061498 CM091761.1 scf7180002754494 99.67 True local misassembly 10795616 10797716 1065118 1063018 CM091761.1 scf7180002754494 99.95 True indel: indel (> 5bp) 10794263 10795579 1066445 1065129 CM091761.1 scf7180002754494 99.54 True indel: indel (<= 5bp) 10793640 10794262 1067069 1066447 CM091761.1 scf7180002754494 99.68 True indel: indel (<= 5bp) 10792979 10793638 1067729 1067070 CM091761.1 scf7180002754494 99.85 True indel: indel (> 5bp) 10791626 10792733 1069099 1067992 CM091761.1 scf7180002754494 99.82 True indel: indel (<= 5bp) 10790418 10791625 1070308 1069101 CM091761.1 scf7180002754494 99.92 True indel: indel (<= 5bp) 10789137 10790281 1071588 1070444 CM091761.1 scf7180002754494 99.39 True indel: indel (<= 5bp) 10786525 10788734 1074201 1071992 CM091761.1 scf7180002754494 99.46 True indel: indel (<= 5bp) 10785905 10786496 1074824 1074233 CM091761.1 scf7180002754494 99.83 True indel: indel (> 5bp) 10781879 10785401 1078836 1075314 CM091761.1 scf7180002754494 99.55 True indel: indel (<= 5bp) 10781248 10781852 1079469 1078865 CM091761.1 scf7180002754494 100.0 True indel: indel (<= 5bp) 10780712 10781247 1080006 1079471 CM091761.1 scf7180002754494 99.25 True indel: indel (<= 5bp) 10778891 10780711 1081828 1080008 CM091761.1 scf7180002754494 99.89 True indel: indel (<= 5bp) 10778056 10778890 1082664 1081830 CM091761.1 scf7180002754494 99.52 True indel: indel (> 5bp) 10775739 10777548 1084974 1083165 CM091761.1 scf7180002754494 99.94 True local misassembly 10771106 10772012 1085881 1084975 CM091761.1 scf7180002754494 99.45 True indel: indel (<= 5bp) 10767961 10771105 1089027 1085883 CM091761.1 scf7180002754494 99.75 True indel: indel (<= 5bp) 10767335 10767960 1089654 1089029 CM091761.1 scf7180002754494 98.88 True indel: indel (<= 5bp) 10765268 10767332 1091719 1089655 CM091761.1 scf7180002754494 99.66 True indel: indel (<= 5bp) 10764362 10765267 1092626 1091721 CM091761.1 scf7180002754494 99.56 True indel: indel (<= 5bp) 10762632 10764022 1094357 1092967 CM091761.1 scf7180002754494 99.93 True indel: indel (<= 5bp) 10761706 10762631 1095284 1094359 CM091761.1 scf7180002754494 98.6 True indel: indel (> 5bp) 10760825 10761530 1096195 1095490 CM091761.1 scf7180002754494 99.29 True indel: stretch of mismatches 10634203 10760733 1222843 1096287 CM091761.1 scf7180002754494 99.35 True translocation, scaffold gap is present 6789796 6819346 1252524 1222978 CM091764.1 scf7180002754494 99.24 True translocation, scaffold gap is present 10598130 10633960 1288364 1252561 CM091761.1 scf7180002754494 99.37 True translocation, scaffold gap is present 6758609 6789794 1319553 1288385 CM091764.1 scf7180002754494 99.26 True translocation, scaffold gap is present 10570904 10598097 1346724 1319574 CM091761.1 scf7180002754494 99.07 True translocation, scaffold gap is present 6743578 6758724 1361895 1346745 CM091764.1 scf7180002754494 99.49 True translocation, scaffold gap is present 10562398 10571011 1370528 1361927 CM091761.1 scf7180002754494 99.2 True translocation, scaffold gap is present 6733585 6743687 1380678 1370562 CM091764.1 scf7180002754494 99.5 True translocation, scaffold gap is present 10541095 10562296 1401931 1380731 CM091761.1 scf7180002754494 99.34 True translocation, scaffold gap is present 6732388 6733599 1403163 1401952 CM091764.1 scf7180002754494 99.5 True indel: indel (<= 5bp) 6731475 6732386 1404075 1403164 CM091764.1 scf7180002754494 100.0 True indel: indel (<= 5bp) 6730046 6731473 1405503 1404076 CM091764.1 scf7180002754494 99.86 True indel: indel (<= 5bp) 6727092 6730042 1408454 1405504 CM091764.1 scf7180002754494 99.73 True indel: indel (<= 5bp) 6725847 6727091 1409700 1408456 CM091764.1 scf7180002754494 99.84 True indel: indel (<= 5bp) 6724325 6725846 1411223 1409702 CM091764.1 scf7180002754494 96.19 True indel: indel (<= 5bp) 6720027 6723887 1415523 1411663 CM091764.1 scf7180002754494 99.9 True indel: indel (<= 5bp) 6718626 6719934 1416925 1415617 CM091764.1 scf7180002754494 99.77 True relocation, scaffold gap is present, inconsistency = -18038 6715473 6715974 1438116 1437615 CM091764.1 scf7180002754494 99.8 True indel: indel (<= 5bp) 6712737 6715472 1440853 1438118 CM091764.1 scf7180002754494 99.6 True indel: stretch of mismatches 6710709 6712465 1442881 1441125 CM091764.1 scf7180002754494 99.72 True indel: indel (> 5bp) 6710112 6710708 1443489 1442893 CM091764.1 scf7180002754494 100.0 True indel: indel (> 5bp) 6707613 6710065 1446001 1443549 CM091764.1 scf7180002754494 99.88 True indel: indel (<= 5bp) 6706810 6707612 1446805 1446003 CM091764.1 scf7180002754494 99.38 True indel: indel (> 5bp) 6702338 6706764 1451284 1446858 CM091764.1 scf7180002754494 99.59 True indel: indel (<= 5bp) 6701749 6702336 1451872 1451285 CM091764.1 scf7180002754494 99.49 True indel: stretch of mismatches 6697566 6701524 1456055 1452097 CM091764.1 scf7180002754494 99.57 True translocation, scaffold gap is present 10513538 10522883 1466189 1456842 CM091761.1 scf7180002754494 99.21 True translocation, scaffold gap is present 6684513 6696739 1478458 1466223 CM091764.1 scf7180002754494 99.6 True translocation, scaffold gap is present 10508199 10512989 1483268 1478479 CM091761.1 scf7180002754494 99.35 True local misassembly 10498364 10507452 1493155 1484044 CM091761.1 scf7180002754494 99.34 True translocation, scaffold gap is present 6678241 6683906 1508636 1502976 CM091764.1 scf7180002754494 99.23 True local misassembly 6655680 6678136 1531119 1508651 CM091764.1 scf7180002754494 99.56 True translocation, scaffold gap is present 10480627 10498363 1548907 1531140 CM091761.1 scf7180002754494 99.37 True indel: stretch of mismatches 10444907 10480552 1584393 1548982 CM091761.1 scf7180002754494 98.53 True local misassembly 10329364 10444537 1699901 1584878 CM091761.1 scf7180002754494 96.83 True fake: scaffold gap size wrong estimation (local) 10127408 10329222 1901830 1700025 CM091761.1 scf7180002754494 99.2 True fake: scaffold gap size wrong estimation (local) 10035801 10127277 1992095 1902059 CM091761.1 scf7180002754494 97.52 True fake: scaffold gap size wrong estimation (local) 10018120 10035587 2009652 1992339 CM091761.1 scf7180002754494 98.21 True indel: indel (> 5bp) 9968090 10018094 2059682 2009700 CM091761.1 scf7180002754494 99.44 True fake: scaffold gap size wrong estimation (local) 9814278 9967147 2212598 2060026 CM091761.1 scf7180002754494 99.07 True fake: scaffold gap size wrong estimation (local) 9800332 9813747 2226662 2213236 CM091761.1 scf7180002754494 99.32 True fake: scaffold gap size wrong estimation (extensive) 9786153 9793310 2233844 2226683 CM091761.1 scf7180002754494 99.78 True relocation, scaffold gap is present, inconsistency = -13992 9798111 9800124 2235878 2233865 CM091761.1 scf7180002754494 99.8 True fake: scaffold gap size wrong estimation (local) 9793337 9797138 2241363 2237629 CM091761.1 scf7180002754494 98.11 True fake: scaffold gap size wrong estimation (local) 9560319 9786168 2467381 2242607 CM091761.1 scf7180002754494 98.77 True indel: indel (> 5bp) 9492866 9560294 2533984 2467434 CM091761.1 scf7180002754494 97.89 True fake: scaffold gap size wrong estimation (local) 9253388 9492649 2773849 2534245 CM091761.1 scf7180002754494 99.36 True indel: indel (> 5bp) 9228784 9253320 2798471 2773924 CM091761.1 scf7180002754494 99.4 True indel: indel (> 5bp) 9208976 9228750 2818317 2798513 CM091761.1 scf7180002754494 99.45 True translocation 3772971 3774512 2818318 2819859 CM091766.1 scf7180002754494 99.87 True CONTIG scf7180002754494 2819859 misassembled 18457900 18458914 1041 18 CM091752.1 scf7180002754495 95.53 True translocation 3162000 3162671 2259 1588 CM091768.1 scf7180002754495 99.26 True indel: indel (<= 5bp) 3160295 3161967 3966 2294 CM091768.1 scf7180002754495 99.64 True indel: indel (<= 5bp) 3158692 3160129 5572 4135 CM091768.1 scf7180002754495 98.89 True indel: indel (<= 5bp) 3158152 3158691 6116 5577 CM091768.1 scf7180002754495 99.26 True local misassembly 3154741 3155995 8928 7674 CM091768.1 scf7180002754495 99.52 True local misassembly 3152956 3154287 10615 9284 CM091768.1 scf7180002754495 99.47 True local misassembly 3151148 3152126 12433 11455 CM091768.1 scf7180002754495 99.49 True indel: indel (> 5bp) 3124282 3151047 39130 12502 CM091768.1 scf7180002754495 98.34 True local misassembly 3121089 3123764 42052 39377 CM091768.1 scf7180002754495 99.4 True indel: indel (> 5bp) 3118976 3120845 44159 42290 CM091768.1 scf7180002754495 99.2 True indel: indel (<= 5bp) 3118470 3118975 44669 44164 CM091768.1 scf7180002754495 97.43 True local misassembly 3115767 3116641 46430 45556 CM091768.1 scf7180002754495 98.86 True local misassembly 3114578 3115167 47614 47025 CM091768.1 scf7180002754495 99.83 True indel: indel (<= 5bp) 3113913 3114577 48280 47616 CM091768.1 scf7180002754495 99.25 True indel: indel (<= 5bp) 3112591 3113742 49604 48453 CM091768.1 scf7180002754495 99.31 True local misassembly 3107455 3108193 54753 54015 CM091768.1 scf7180002754495 99.05 True indel: indel (> 5bp) 3106263 3107338 55996 54921 CM091768.1 scf7180002754495 99.16 True indel: stretch of mismatches 3105526 3106177 56733 56082 CM091768.1 scf7180002754495 99.39 True fake: scaffold gap size wrong estimation (local) 3103352 3104401 58915 57866 CM091768.1 scf7180002754495 99.52 True indel: indel (> 5bp) 3102668 3103304 59610 58974 CM091768.1 scf7180002754495 99.22 True fake: scaffold gap size wrong estimation (local) 3099484 3100288 62824 62020 CM091768.1 scf7180002754495 99.13 True indel: indel (<= 5bp) 3098781 3099482 63526 62825 CM091768.1 scf7180002754495 99.57 True local misassembly 3097605 3098118 64319 63806 CM091768.1 scf7180002754495 98.83 True local misassembly 3096445 3096994 65510 64961 CM091768.1 scf7180002754495 99.82 True indel: indel (<= 5bp) 3095393 3096443 66561 65511 CM091768.1 scf7180002754495 99.33 True indel: indel (<= 5bp) 3093588 3095063 68367 66892 CM091768.1 scf7180002754495 99.25 True indel: indel (> 5bp) 3085365 3093131 76573 68833 CM091768.1 scf7180002754495 98.64 True local misassembly 3084532 3085426 77589 76685 CM091768.1 scf7180002754495 96.91 True indel: indel (> 5bp) 3055018 3084265 106768 77831 CM091768.1 scf7180002754495 98.13 True local misassembly 3051159 3052330 110697 109526 CM091768.1 scf7180002754495 99.23 True indel: indel (<= 5bp) 3050615 3051157 111240 110698 CM091768.1 scf7180002754495 98.9 True local misassembly 3048674 3049355 113180 112499 CM091768.1 scf7180002754495 97.65 True fake: scaffold gap size wrong estimation (local) 3047070 3047701 114768 114137 CM091768.1 scf7180002754495 100.0 True indel: indel (> 5bp) 3046330 3046979 115502 114853 CM091768.1 scf7180002754495 99.08 True indel: indel (<= 5bp) 3044950 3046328 116881 115503 CM091768.1 scf7180002754495 99.35 True local misassembly 3042818 3044396 119018 117440 CM091768.1 scf7180002754495 99.24 True indel: indel (> 5bp) 3041961 3042642 119868 119187 CM091768.1 scf7180002754495 99.41 True local misassembly 3039618 3040267 122215 121566 CM091768.1 scf7180002754495 99.23 True local misassembly 3037981 3039002 123850 122829 CM091768.1 scf7180002754495 99.9 True indel: indel (<= 5bp) 3037382 3037980 124450 123852 CM091768.1 scf7180002754495 99.5 True indel: stretch of mismatches 3036645 3037217 125187 124615 CM091768.1 scf7180002754495 99.65 True local misassembly 3034743 3035938 127089 125894 CM091768.1 scf7180002754495 99.92 True indel: indel (<= 5bp) 3033981 3034507 127850 127324 CM091768.1 scf7180002754495 99.81 True local misassembly 3030122 3031314 130834 129642 CM091768.1 scf7180002754495 98.91 True indel: indel (> 5bp) 3028439 3030096 132492 130835 CM091768.1 scf7180002754495 99.22 True local misassembly 3008428 3026615 151239 133352 CM091768.1 scf7180002754495 96.44 True indel: indel (> 5bp) 2960088 3008398 199681 151300 CM091768.1 scf7180002754495 98.96 True translocation 14325239 14334300 208750 199682 CM091753.1 scf7180002754495 98.83 True indel: indel (> 5bp) 14227955 14325150 306121 208792 CM091753.1 scf7180002754495 99.0 True fake: scaffold gap size wrong estimation (local) 14208887 14227572 324935 306228 CM091753.1 scf7180002754495 99.18 True local misassembly 14051460 14208854 482275 325134 CM091753.1 scf7180002754495 98.82 True fake: scaffold gap size wrong estimation (local) 13987033 14051244 545907 482421 CM091753.1 scf7180002754495 98.19 True fake: scaffold gap size wrong estimation (local) 13944775 13986640 587229 546084 CM091753.1 scf7180002754495 97.48 True fake: not a misassembly (possible transposable element) 13803836 13808867 587382 592393 CM091754.1 scf7180002754495 99.01 True fake: not a misassembly (possible transposable element) 13929675 13944448 607192 592414 CM091753.1 scf7180002754495 99.03 True translocation, scaffold gap is present 13809831 13826771 607213 624220 CM091754.1 scf7180002754495 98.84 True translocation, scaffold gap is present 13922350 13929443 632018 624874 CM091753.1 scf7180002754495 99.05 True fake: not a misassembly (possible transposable element) 13827241 13828552 632039 633349 CM091754.1 scf7180002754495 99.32 True fake: not a misassembly (possible transposable element) 13877482 13922198 678155 633370 CM091753.1 scf7180002754495 99.21 True fake: scaffold gap size wrong estimation (local) 13836614 13877369 719007 678246 CM091753.1 scf7180002754495 99.5 True translocation, scaffold gap is present 15452523 15499782 719036 766241 CM091756.1 scf7180002754495 99.41 True translocation, scaffold gap is present 13830154 13835988 772103 766262 CM091753.1 scf7180002754495 99.4 True fake: scaffold gap size wrong estimation (local) 13795950 13830102 805585 772173 CM091753.1 scf7180002754495 97.55 True translocation, scaffold gap is present 15499661 15519582 805606 825485 CM091756.1 scf7180002754495 99.54 True translocation, scaffold gap is present 13787239 13795797 834042 825506 CM091753.1 scf7180002754495 99.0 True fake: scaffold gap size wrong estimation (local) 13765856 13786366 854552 834387 CM091753.1 scf7180002754495 97.73 True translocation, scaffold gap is present 15519473 15945032 854573 1278884 CM091756.1 scf7180002754495 99.21 True translocation 14621439 14622843 1280468 1279064 CM091758.1 scf7180002754495 99.79 True local misassembly 14615756 14620305 1285348 1280799 CM091758.1 scf7180002754495 99.82 True translocation, scaffold gap is present 468025 517341 1334647 1285369 CM091755.1 scf7180002754495 99.85 True translocation 553083 567203 1334648 1348525 CM091754.1 scf7180002754495 97.64 True local misassembly 567832 569444 1348526 1350138 CM091754.1 scf7180002754495 99.79 True local misassembly 571137 571975 1351834 1352672 CM091754.1 scf7180002754495 99.4 True indel: indel (<= 5bp) 572134 572873 1352833 1353572 CM091754.1 scf7180002754495 99.73 True indel: indel (<= 5bp) 572874 573853 1353574 1354553 CM091754.1 scf7180002754495 99.59 True indel: indel (<= 5bp) 573854 574535 1354555 1355236 CM091754.1 scf7180002754495 99.56 True indel: indel (<= 5bp) 574537 575325 1355237 1356025 CM091754.1 scf7180002754495 99.87 True indel: indel (<= 5bp) 575327 576814 1356026 1357513 CM091754.1 scf7180002754495 99.66 True local misassembly 580506 582670 1357514 1359678 CM091754.1 scf7180002754495 99.49 True indel: indel (> 5bp) 582677 583446 1359679 1360448 CM091754.1 scf7180002754495 98.57 True indel: indel (<= 5bp) 583447 584803 1360451 1361807 CM091754.1 scf7180002754495 99.85 True CONTIG scf7180002754495 1361938 misassembled 2156436 2166053 1 9368 CM091751.1 scf7180002754496 95.4 True fake: scaffold gap size wrong estimation (local) 2166392 2168985 9460 12052 CM091751.1 scf7180002754496 98.34 True fake: scaffold gap size wrong estimation (local) 2171186 2262900 14566 105639 CM091751.1 scf7180002754496 98.44 True indel: indel (> 5bp) 2262988 2292466 105741 134422 CM091751.1 scf7180002754496 96.63 True fake: scaffold gap size wrong estimation (local) 2292885 2295964 134540 137624 CM091751.1 scf7180002754496 98.32 True local misassembly 2296849 2302544 138474 144173 CM091751.1 scf7180002754496 99.47 True fake: scaffold gap size wrong estimation (local) 2302815 2303953 144449 145587 CM091751.1 scf7180002754496 99.74 True indel: indel (<= 5bp) 2303955 2304841 145588 146474 CM091751.1 scf7180002754496 99.66 True indel: indel (<= 5bp) 2305241 2305743 146869 147371 CM091751.1 scf7180002754496 99.8 True local misassembly 2307169 2309509 148794 151134 CM091751.1 scf7180002754496 99.57 True indel: indel (<= 5bp) 2309510 2310398 151136 152024 CM091751.1 scf7180002754496 100.0 True indel: indel (<= 5bp) 2310399 2311041 152027 152669 CM091751.1 scf7180002754496 99.69 True local misassembly 2311901 2314400 153514 156013 CM091751.1 scf7180002754496 99.56 True local misassembly 2314930 2317065 156341 158476 CM091751.1 scf7180002754496 99.3 True indel: indel (<= 5bp) 2317506 2318024 158914 159432 CM091751.1 scf7180002754496 99.81 True local misassembly 2318650 2320572 160063 161985 CM091751.1 scf7180002754496 99.64 True local misassembly 2321393 2324039 161986 164632 CM091751.1 scf7180002754496 98.56 True translocation, scaffold gap is present 2212291 2220081 164653 172456 CM091765.1 scf7180002754496 99.14 True translocation, scaffold gap is present 2324265 2335634 172477 183869 CM091751.1 scf7180002754496 98.48 True translocation, scaffold gap is present 2220568 2229904 183890 193241 CM091765.1 scf7180002754496 99.6 True fake: not a misassembly (possible transposable element) 2335846 2341601 193262 199013 CM091751.1 scf7180002754496 99.72 True fake: not a misassembly (possible transposable element) 2230278 2238896 199034 207649 CM091765.1 scf7180002754496 99.61 True translocation, scaffold gap is present 2341483 2377107 207670 242568 CM091751.1 scf7180002754496 97.48 True translocation, scaffold gap is present 2238915 2242444 242627 246156 CM091765.1 scf7180002754496 99.58 True indel: indel (> 5bp) 2242871 2243390 246592 247111 CM091765.1 scf7180002754496 100.0 True indel: indel (> 5bp) 2243391 2244054 247118 247781 CM091765.1 scf7180002754496 99.55 True indel: indel (> 5bp) 2244114 2245161 247847 248894 CM091765.1 scf7180002754496 99.52 True indel: indel (> 5bp) 2245217 2246000 248895 249678 CM091765.1 scf7180002754496 99.74 True indel: indel (<= 5bp) 2246002 2246891 249679 250568 CM091765.1 scf7180002754496 99.66 True indel: indel (> 5bp) 2247035 2248859 250724 252548 CM091765.1 scf7180002754496 99.62 True indel: indel (<= 5bp) 2248860 2252406 252550 256096 CM091765.1 scf7180002754496 99.52 True fake: scaffold gap size wrong estimation (local) 2252407 2253504 256116 257213 CM091765.1 scf7180002754496 99.45 True fake: scaffold gap size wrong estimation (local) 2254415 2256159 257779 259523 CM091765.1 scf7180002754496 98.97 True indel: indel (<= 5bp) 2256647 2257957 260016 261326 CM091765.1 scf7180002754496 99.62 True indel: indel (<= 5bp) 2257958 2260037 261329 263408 CM091765.1 scf7180002754496 99.62 True local misassembly 2260618 2265371 263658 268411 CM091765.1 scf7180002754496 99.03 True indel: indel (<= 5bp) 2265412 2267671 268457 270716 CM091765.1 scf7180002754496 98.81 True relocation, inconsistency = -9584 2267672 2275255 280301 287884 CM091765.1 scf7180002754496 99.43 True local misassembly 2275914 2278082 288530 290698 CM091765.1 scf7180002754496 99.17 True fake: scaffold gap size wrong estimation (local) 2278083 2279474 292302 293693 CM091765.1 scf7180002754496 98.42 True indel: indel (<= 5bp) 2279478 2280271 293694 294487 CM091765.1 scf7180002754496 99.62 True indel: indel (> 5bp) 2280272 2282158 294496 296382 CM091765.1 scf7180002754496 99.68 True indel: indel (<= 5bp) 2282161 2284165 296383 298387 CM091765.1 scf7180002754496 99.65 True indel: indel (<= 5bp) 2284166 2285606 298390 299830 CM091765.1 scf7180002754496 99.65 True indel: indel (<= 5bp) 2285607 2286367 299832 300592 CM091765.1 scf7180002754496 99.87 True indel: indel (> 5bp) 2286368 2287622 300600 301854 CM091765.1 scf7180002754496 99.76 True translocation, scaffold gap is present 2389836 2391902 301875 303941 CM091751.1 scf7180002754496 99.66 True local misassembly 2392851 2394687 304260 306096 CM091751.1 scf7180002754496 99.62 True indel: stretch of mismatches 2394760 2396725 306169 308134 CM091751.1 scf7180002754496 99.69 True indel: indel (<= 5bp) 2396726 2397800 308139 309213 CM091751.1 scf7180002754496 98.98 True indel: indel (<= 5bp) 2398272 2398871 309688 310287 CM091751.1 scf7180002754496 99.67 True indel: indel (<= 5bp) 2398872 2400078 310289 311495 CM091751.1 scf7180002754496 99.67 True local misassembly 2401025 2401720 311911 312606 CM091751.1 scf7180002754496 98.85 True translocation, scaffold gap is present 2288621 2298689 313528 323594 CM091765.1 scf7180002754496 99.66 True translocation, scaffold gap is present 2402975 2432004 323624 352693 CM091751.1 scf7180002754496 99.38 True indel: indel (> 5bp) 2432102 2432605 352804 353313 CM091751.1 scf7180002754496 97.65 True translocation, scaffold gap is present 2298735 2299962 353334 354561 CM091765.1 scf7180002754496 99.84 True indel: indel (<= 5bp) 2299963 2301059 354565 355661 CM091765.1 scf7180002754496 99.64 True indel: stretch of mismatches 2301457 2302227 356059 356829 CM091765.1 scf7180002754496 99.74 True indel: indel (> 5bp) 2302228 2304761 356871 359404 CM091765.1 scf7180002754496 99.8 True indel: indel (<= 5bp) 2304765 2305961 359405 360601 CM091765.1 scf7180002754496 99.25 True indel: indel (> 5bp) 2306006 2310642 360659 365295 CM091765.1 scf7180002754496 99.81 True indel: indel (> 5bp) 2310683 2314662 365296 369275 CM091765.1 scf7180002754496 99.57 True fake: scaffold gap size wrong estimation (local) 2316491 2327599 371086 382194 CM091765.1 scf7180002754496 99.94 True indel: indel (<= 5bp) 2327600 2331481 382198 386079 CM091765.1 scf7180002754496 99.59 True indel: indel (<= 5bp) 2331482 2332211 386081 386810 CM091765.1 scf7180002754496 98.49 True relocation, scaffold gap is present, inconsistency = -13843 2332212 2332874 400654 401316 CM091765.1 scf7180002754496 96.53 True indel: indel (<= 5bp) 2332875 2334649 401318 403092 CM091765.1 scf7180002754496 99.72 True indel: indel (<= 5bp) 2334651 2335170 403093 403612 CM091765.1 scf7180002754496 99.04 True indel: indel (> 5bp) 2335171 2336147 403629 404605 CM091765.1 scf7180002754496 99.49 True indel: indel (<= 5bp) 2336150 2336795 404606 405251 CM091765.1 scf7180002754496 99.54 True indel: indel (<= 5bp) 2336796 2338208 405253 406665 CM091765.1 scf7180002754496 99.65 True indel: indel (<= 5bp) 2338209 2339154 406667 407612 CM091765.1 scf7180002754496 99.79 True indel: indel (<= 5bp) 2339156 2339937 407613 408394 CM091765.1 scf7180002754496 99.87 True indel: indel (<= 5bp) 2339942 2341198 408395 409651 CM091765.1 scf7180002754496 99.68 True indel: indel (<= 5bp) 2341199 2345175 409653 413629 CM091765.1 scf7180002754496 99.67 True translocation, scaffold gap is present 2447301 2463566 413664 429911 CM091751.1 scf7180002754496 99.18 True translocation, scaffold gap is present 2345319 2408202 429932 492873 CM091765.1 scf7180002754496 99.41 True translocation, scaffold gap is present 2463924 2507508 492894 542613 CM091751.1 scf7180002754496 96.52 True translocation, scaffold gap is present 2408218 2479269 559880 631121 CM091765.1 scf7180002754496 99.19 True fake: scaffold gap size wrong estimation (local) 2479928 2613947 631211 765157 CM091765.1 scf7180002754496 99.33 True indel: indel (> 5bp) 2614080 2649674 765323 799777 CM091765.1 scf7180002754496 95.93 True fake: scaffold gap size wrong estimation (local) 2649805 2667654 799907 817471 CM091765.1 scf7180002754496 97.89 True indel: indel (<= 5bp) 2667725 2811478 817547 961374 CM091765.1 scf7180002754496 99.45 True indel: indel (> 5bp) 2811523 2880907 961434 1030810 CM091765.1 scf7180002754496 99.82 True fake: scaffold gap size wrong estimation (local) 2885043 2896391 1035004 1046393 CM091765.1 scf7180002754496 99.14 True fake: scaffold gap size wrong estimation (local) 2896571 2910765 1046618 1060859 CM091765.1 scf7180002754496 99.41 True fake: scaffold gap size wrong estimation (local) 2910854 2914145 1060935 1064224 CM091765.1 scf7180002754496 99.7 True indel: indel (> 5bp) 2914272 3125792 1064401 1275246 CM091765.1 scf7180002754496 99.17 True indel: indel (> 5bp) 3125852 3135883 1275313 1285326 CM091765.1 scf7180002754496 96.16 True local misassembly 3136940 3137858 1286319 1287237 CM091765.1 scf7180002754496 99.35 True indel: indel (<= 5bp) 3137895 3139413 1287273 1288791 CM091765.1 scf7180002754496 99.47 True indel: indel (<= 5bp) 3139417 3140005 1288792 1289380 CM091765.1 scf7180002754496 99.15 True indel: indel (<= 5bp) 3140011 3141301 1289381 1290671 CM091765.1 scf7180002754496 99.77 True local misassembly 3145589 3147570 1291016 1292997 CM091765.1 scf7180002754496 99.55 True indel: indel (> 5bp) 3147580 3148542 1292998 1293960 CM091765.1 scf7180002754496 99.38 True indel: indel (<= 5bp) 3148543 3149264 1293963 1294684 CM091765.1 scf7180002754496 99.31 True indel: indel (> 5bp) 3149275 3152589 1294685 1297999 CM091765.1 scf7180002754496 99.46 True indel: indel (<= 5bp) 3152809 3153610 1298218 1299019 CM091765.1 scf7180002754496 99.88 True local misassembly 3154412 3156550 1299817 1301955 CM091765.1 scf7180002754496 98.32 True indel: indel (> 5bp) 3156914 3157627 1302313 1303026 CM091765.1 scf7180002754496 99.02 True fake: scaffold gap size wrong estimation (local) 3158139 3159128 1303529 1304518 CM091765.1 scf7180002754496 99.8 True indel: indel (> 5bp) 3159150 3160510 1304519 1305879 CM091765.1 scf7180002754496 99.12 True local misassembly 3161291 3161903 1306659 1307271 CM091765.1 scf7180002754496 99.84 True indel: indel (<= 5bp) 3161970 3162555 1307340 1307925 CM091765.1 scf7180002754496 99.15 True indel: indel (> 5bp) 3162556 3163369 1307934 1308747 CM091765.1 scf7180002754496 98.16 True indel: indel (<= 5bp) 3163708 3164865 1309084 1310241 CM091765.1 scf7180002754496 99.65 True local misassembly 3165382 3167932 1310532 1313082 CM091765.1 scf7180002754496 98.82 True local misassembly 3168046 3169115 1313316 1314385 CM091765.1 scf7180002754496 99.91 True indel: indel (<= 5bp) 3169118 3169673 1314386 1314941 CM091765.1 scf7180002754496 99.46 True indel: indel (> 5bp) 3169709 3170460 1314942 1315693 CM091765.1 scf7180002754496 99.2 True indel: indel (<= 5bp) 3170461 3171146 1315698 1316383 CM091765.1 scf7180002754496 99.71 True indel: indel (<= 5bp) 3171147 3172330 1316387 1317570 CM091765.1 scf7180002754496 99.49 True local misassembly 3172733 3174573 1317571 1319411 CM091765.1 scf7180002754496 99.29 True indel: indel (<= 5bp) 3174574 3175901 1319413 1320740 CM091765.1 scf7180002754496 99.7 True local misassembly 3176022 3177063 1320741 1321782 CM091765.1 scf7180002754496 99.52 True fake: scaffold gap size wrong estimation (local) 3177350 3178241 1322112 1323003 CM091765.1 scf7180002754496 99.44 True indel: indel (> 5bp) 3178242 3179085 1323013 1323856 CM091765.1 scf7180002754496 99.88 True local misassembly 3179661 3185983 1324146 1330464 CM091765.1 scf7180002754496 98.78 True indel: indel (> 5bp) 3186075 3186641 1330607 1331173 CM091765.1 scf7180002754496 99.82 True indel: indel (> 5bp) 3186662 3220286 1331210 1364982 CM091765.1 scf7180002754496 98.75 True local misassembly 3221050 3222259 1365738 1366947 CM091765.1 scf7180002754496 98.93 True local misassembly 3223200 3225583 1367426 1369809 CM091765.1 scf7180002754496 99.54 True indel: indel (<= 5bp) 3225584 3226133 1369811 1370360 CM091765.1 scf7180002754496 99.64 True local misassembly 3227433 3229201 1371663 1373431 CM091765.1 scf7180002754496 99.77 True indel: indel (<= 5bp) 3229203 3230177 1373432 1374406 CM091765.1 scf7180002754496 98.56 True local misassembly 3230577 3231403 1374622 1375448 CM091765.1 scf7180002754496 99.88 True indel: indel (> 5bp) 3231502 3233128 1375529 1377153 CM091765.1 scf7180002754496 99.2 True fake: scaffold gap size wrong estimation (local) 3233916 3243417 1377472 1386781 CM091765.1 scf7180002754496 96.6 True indel: indel (<= 5bp) 3243436 3273322 1386801 1416481 CM091765.1 scf7180002754496 97.68 True fake: scaffold gap size wrong estimation (local) 3273486 3304754 1416532 1447796 CM091765.1 scf7180002754496 99.26 True indel: indel (> 5bp) 3304836 3315387 1447862 1458381 CM091765.1 scf7180002754496 98.89 True fake: scaffold gap size wrong estimation (local) 3315525 3320335 1458517 1463321 CM091765.1 scf7180002754496 98.76 True CONTIG scf7180002754496 1463321 misassembled 14763643 14809815 45178 32 CM091753.1 scf7180002754497 96.55 True fake: scaffold gap size wrong estimation (local) 14752696 14763617 57974 47382 CM091753.1 scf7180002754497 96.36 True CONTIG scf7180002754497 57974 correct 4665538 4667277 1740 1 CM091754.1 scf7180002754498 98.85 True local misassembly 4662679 4665214 4276 1741 CM091754.1 scf7180002754498 99.88 True CONTIG scf7180002754498 4276 correct 3998014 3998936 923 1 CM091752.1 scf7180002754499 100.0 True CONTIG scf7180002754499 923 correct 18546565 18547442 880 1 CM091751.1 scf7180002754500 99.55 True CONTIG scf7180002754500 880 correct 18543876 18546512 2674 16 CM091751.1 scf7180002754501 97.9 True CONTIG scf7180002754501 2674 correct 15821451 15829862 1 8426 CM091752.1 scf7180002754502 99.55 True CONTIG scf7180002754502 8435 correct 17152655 17153216 560 1 CM091752.1 scf7180002754503 99.64 True CONTIG scf7180002754503 569 correct 4853931 4886175 31971 41 CM091768.1 scf7180002754504 98.84 True CONTIG scf7180002754504 31971 correct 12619237 12620761 1975 452 CM091757.1 scf7180002754505 99.93 True fake: scaffold gap size wrong estimation (local) 12614911 12619012 6609 2508 CM091757.1 scf7180002754505 100.0 True fake: scaffold gap size wrong estimation (local) 12596320 12614066 24374 6630 CM091757.1 scf7180002754505 99.99 True relocation, scaffold gap is present, inconsistency = -14365 12575427 12596441 59631 38618 CM091757.1 scf7180002754505 99.99 True translocation, scaffold gap is present 2954623 2960124 65343 59652 CM091768.1 scf7180002754505 95.32 True translocation, scaffold gap is present 12556307 12574531 88955 70727 CM091757.1 scf7180002754505 99.98 True translocation, scaffold gap is present 2948066 2954742 95671 88976 CM091768.1 scf7180002754505 98.91 True local misassembly 2949513 2950109 99883 99287 CM091768.1 scf7180002754505 98.66 True translocation, scaffold gap is present 12543188 12556415 125851 112624 CM091757.1 scf7180002754505 99.92 True local misassembly 12506237 12542376 163340 127286 CM091757.1 scf7180002754505 99.36 True relocation, scaffold gap is present, inconsistency = -10085 12332789 12506232 346697 173430 CM091757.1 scf7180002754505 99.15 True CONTIG scf7180002754505 346767 misassembled 12894354 12907059 49 12759 CM091758.1 scf7180002754506 99.7 True fake: scaffold gap size wrong estimation (local) 12907360 12950608 12780 55997 CM091758.1 scf7180002754506 99.66 True local misassembly 12951109 13033255 56207 138205 CM091758.1 scf7180002754506 99.59 True CONTIG scf7180002754506 138205 correct 16053884 16056767 2906 26 CM091757.1 scf7180002754507 98.65 True translocation, scaffold gap is present 3021594 3023817 2927 5150 CM091752.1 scf7180002754507 99.96 True fake: scaffold gap size wrong estimation (local) 3023951 3025359 5274 6682 CM091752.1 scf7180002754507 100.0 True fake: scaffold gap size wrong estimation (local) 3025235 3026261 10007 11034 CM091752.1 scf7180002754507 99.9 True CONTIG scf7180002754507 11034 misassembled 3983631 3993729 10979 900 CM091752.1 scf7180002754508 99.73 True indel: indel (> 5bp) 3982739 3983442 11936 11214 CM091752.1 scf7180002754508 96.4 True translocation 8038883 8039726 12178 13032 CM091767.1 scf7180002754508 95.09 True indel: indel (<= 5bp) 8039770 8040495 13073 13790 CM091767.1 scf7180002754508 96.42 True indel: indel (> 5bp) 8040814 8049632 14100 22573 CM091767.1 scf7180002754508 95.1 True fake: scaffold gap size wrong estimation (local) 8049634 8050259 25140 25766 CM091767.1 scf7180002754508 99.84 True CONTIG scf7180002754508 25792 misassembled 5467068 5534289 67165 1 CM091754.1 scf7180002754509 99.83 True CONTIG scf7180002754509 67165 correct 804027 858190 1 54157 CM091755.1 scf7180002754510 99.97 True fake: scaffold gap size wrong estimation (local) 858319 903500 54357 99543 CM091755.1 scf7180002754510 99.96 True CONTIG scf7180002754510 99708 correct 13893244 13918970 1 24871 CM091754.1 scf7180002754511 96.04 True fake: scaffold gap size wrong estimation (extensive) 13919549 13925366 33813 39673 CM091754.1 scf7180002754511 99.35 True indel: indel (> 5bp) 13925472 13941320 39739 55640 CM091754.1 scf7180002754511 99.14 True relocation, scaffold gap is present, inconsistency = -14250 13941314 13989032 69884 117017 CM091754.1 scf7180002754511 97.91 True indel: indel (> 5bp) 13989368 14019004 117406 147086 CM091754.1 scf7180002754511 98.89 True CONTIG scf7180002754511 147091 misassembled 3350533 3351415 1 885 CM091765.1 scf7180002754512 96.43 True indel: indel (> 5bp) 3351469 3368770 963 18230 CM091765.1 scf7180002754512 98.91 True local misassembly 3369086 3405149 18335 53784 CM091765.1 scf7180002754512 97.05 True indel: indel (<= 5bp) 3405221 3481999 53861 130665 CM091765.1 scf7180002754512 99.62 True CONTIG scf7180002754512 130665 correct 78928 84416 5490 1 CM091760.1 scf7180002754513 99.87 True relocation, inconsistency = 9614 37577 69313 37445 5491 CM091760.1 scf7180002754513 99.3 True CONTIG scf7180002754513 37460 misassembled 999072 1015003 15959 33 CM091752.1 scf7180002754514 99.65 True fake: scaffold gap size wrong estimation (local) 996230 998514 20085 17799 CM091752.1 scf7180002754514 98.82 True local misassembly 979121 994947 36079 20231 CM091752.1 scf7180002754514 99.59 True indel: indel (> 5bp) 965580 979095 49650 36135 CM091752.1 scf7180002754514 99.36 True relocation, scaffold gap is present, inconsistency = -25620 958790 965564 81867 75286 CM091752.1 scf7180002754514 95.58 True fake: scaffold gap size wrong estimation (local) 950609 958826 92341 84347 CM091752.1 scf7180002754514 96.17 True fake: scaffold gap size wrong estimation (local) 941347 950624 109897 96034 CM091752.1 scf7180002754514 97.58 True fake: scaffold gap size wrong estimation (local) 918809 939499 130623 109918 CM091752.1 scf7180002754514 99.4 True CONTIG scf7180002754514 130626 misassembled 3806801 3821259 53 14436 CM091755.1 scf7180002754515 98.8 True indel: indel (> 5bp) 3821424 3861792 14570 54605 CM091755.1 scf7180002754515 98.67 True fake: scaffold gap size wrong estimation (local) 3862002 3896783 54799 89147 CM091755.1 scf7180002754515 98.09 True fake: scaffold gap size wrong estimation (local) 3897314 3906853 89665 99186 CM091755.1 scf7180002754515 99.09 True CONTIG scf7180002754515 99186 correct 7153556 7163383 1 9847 CM091751.1 scf7180002754516 99.58 True fake: scaffold gap size wrong estimation (local) 7163572 7186294 10057 32803 CM091751.1 scf7180002754516 99.35 True indel: indel (> 5bp) 7186337 7232984 32883 79088 CM091751.1 scf7180002754516 97.77 True indel: indel (> 5bp) 7233034 7241772 79129 87909 CM091751.1 scf7180002754516 99.09 True fake: scaffold gap size wrong estimation (local) 7241948 7249997 91084 99133 CM091751.1 scf7180002754516 99.71 True fake: scaffold gap size wrong estimation (local) 7249892 7348118 102575 200775 CM091751.1 scf7180002754516 99.55 True fake: scaffold gap size wrong estimation (local) 7348413 7356800 204867 213237 CM091751.1 scf7180002754516 98.97 True fake: scaffold gap size wrong estimation (local) 7357683 7359343 213569 215229 CM091751.1 scf7180002754516 99.88 True indel: indel (> 5bp) 7359517 7377339 215329 233187 CM091751.1 scf7180002754516 98.59 True CONTIG scf7180002754516 233204 correct 11256810 11268903 12067 1 CM091765.1 scf7180002754517 97.96 True CONTIG scf7180002754517 12067 correct 6187532 6281193 1 93726 CM091765.1 scf7180002754518 99.53 True fake: scaffold gap size wrong estimation (local) 6281442 6337563 93985 150253 CM091765.1 scf7180002754518 99.27 True relocation, scaffold gap is present, inconsistency = -54888 6337577 6390245 205155 257861 CM091765.1 scf7180002754518 99.6 True relocation, scaffold gap is present, inconsistency = -35710 6390542 6412929 293868 316273 CM091765.1 scf7180002754518 99.74 True fake: scaffold gap size wrong estimation (local) 6412942 6482048 322702 391852 CM091765.1 scf7180002754518 99.63 True indel: indel (> 5bp) 6482252 6547544 392011 457352 CM091765.1 scf7180002754518 99.55 True indel: indel (<= 5bp) 6547595 6559037 457399 468870 CM091765.1 scf7180002754518 99.31 True fake: scaffold gap size wrong estimation (local) 6559646 6560350 469411 470133 CM091765.1 scf7180002754518 96.41 True fake: scaffold gap size wrong estimation (local) 6560819 6566203 470798 476467 CM091765.1 scf7180002754518 95.33 True fake: scaffold gap size wrong estimation (local) 6566190 6677783 479010 590671 CM091765.1 scf7180002754518 99.51 True fake: scaffold gap size wrong estimation (local) 6678388 6718745 597828 637778 CM091765.1 scf7180002754518 98.28 True relocation, scaffold gap is present, inconsistency = -20185 6719380 6777826 658598 717080 CM091765.1 scf7180002754518 99.51 True fake: scaffold gap size wrong estimation (local) 6778788 6787342 717664 726221 CM091765.1 scf7180002754518 99.54 True fake: scaffold gap size wrong estimation (local) 6787573 6798669 726340 737396 CM091765.1 scf7180002754518 99.29 True fake: scaffold gap size wrong estimation (local) 6799260 6808162 737541 746470 CM091765.1 scf7180002754518 99.45 True fake: scaffold gap size wrong estimation (local) 6808367 6962155 746643 900719 CM091765.1 scf7180002754518 99.4 True relocation, scaffold gap is present, inconsistency = -18139 6962437 6967607 919140 924309 CM091765.1 scf7180002754518 99.56 True translocation, scaffold gap is present 2221479 2228238 932495 925755 CM091753.1 scf7180002754518 99.47 True translocation, scaffold gap is present 6967606 6970907 936593 939896 CM091765.1 scf7180002754518 99.61 True translocation, scaffold gap is present 2214840 2221567 948041 941315 CM091753.1 scf7180002754518 99.9 True translocation, scaffold gap is present 6971390 6993381 948546 970629 CM091765.1 scf7180002754518 99.23 True translocation, scaffold gap is present 2197681 2214819 993462 976319 CM091753.1 scf7180002754518 99.89 True fake: scaffold gap size wrong estimation (local) 2105385 2197369 1092077 1000136 CM091753.1 scf7180002754518 99.76 True relocation, scaffold gap is present, inconsistency = -92227 2177205 2177948 1112483 1111741 CM091753.1 scf7180002754518 97.72 True fake: scaffold gap size wrong estimation (local) 2162721 2163324 1127008 1126374 CM091753.1 scf7180002754518 97.54 True CONTIG scf7180002754518 1186054 misassembled 3254185 3257301 6 3125 CM091754.1 scf7180002754519 99.04 True indel: indel (> 5bp) 3257362 3258306 3228 4172 CM091754.1 scf7180002754519 99.58 True indel: indel (<= 5bp) 3258308 3259087 4173 4952 CM091754.1 scf7180002754519 99.49 True indel: indel (<= 5bp) 3259088 3259799 4955 5666 CM091754.1 scf7180002754519 98.74 True local misassembly 3260488 3261771 6356 7639 CM091754.1 scf7180002754519 99.61 True indel: indel (> 5bp) 3262007 3262770 7882 8645 CM091754.1 scf7180002754519 97.77 True indel: indel (<= 5bp) 3262776 3263296 8646 9166 CM091754.1 scf7180002754519 99.42 True fake: scaffold gap size wrong estimation (local) 3264290 3265445 10157 11312 CM091754.1 scf7180002754519 99.57 True indel: indel (<= 5bp) 3265446 3269045 11314 14913 CM091754.1 scf7180002754519 99.33 True indel: indel (<= 5bp) 3269046 3270714 14915 16583 CM091754.1 scf7180002754519 99.82 True indel: indel (<= 5bp) 3271038 3271540 16905 17407 CM091754.1 scf7180002754519 99.01 True indel: indel (> 5bp) 3272026 3273475 17899 19348 CM091754.1 scf7180002754519 99.38 True indel: indel (<= 5bp) 3273832 3274458 19707 20333 CM091754.1 scf7180002754519 99.04 True indel: indel (<= 5bp) 3274460 3275867 20334 21741 CM091754.1 scf7180002754519 99.93 True indel: indel (<= 5bp) 3275868 3276702 21743 22577 CM091754.1 scf7180002754519 98.8 True local misassembly 3278285 3278850 22730 23295 CM091754.1 scf7180002754519 99.65 True indel: indel (<= 5bp) 3278851 3279992 23299 24440 CM091754.1 scf7180002754519 99.74 True indel: indel (<= 5bp) 3279993 3282271 24442 26720 CM091754.1 scf7180002754519 99.39 True indel: indel (<= 5bp) 3282272 3282896 26722 27346 CM091754.1 scf7180002754519 99.36 True fake: scaffold gap size wrong estimation (local) 3283733 3285750 27525 29542 CM091754.1 scf7180002754519 99.16 True indel: stretch of mismatches 3286227 3286745 30019 30537 CM091754.1 scf7180002754519 96.92 True indel: indel (<= 5bp) 3286747 3288771 30538 32562 CM091754.1 scf7180002754519 98.81 True local misassembly 3289642 3291669 33446 35473 CM091754.1 scf7180002754519 99.75 True local misassembly 3292399 3292993 36202 36796 CM091754.1 scf7180002754519 99.33 True local misassembly 3295284 3296306 38703 39725 CM091754.1 scf7180002754519 99.02 True indel: indel (<= 5bp) 3296577 3298204 39999 41626 CM091754.1 scf7180002754519 99.14 True indel: indel (<= 5bp) 3298206 3298737 41627 42158 CM091754.1 scf7180002754519 98.31 True CONTIG scf7180002754519 42932 correct 6526300 6538490 12036 2 CM091751.1 scf7180002754520 97.53 True indel: indel (<= 5bp) 6462237 6526257 75892 12078 CM091751.1 scf7180002754520 99.07 True indel: indel (> 5bp) 6324134 6462171 213941 75936 CM091751.1 scf7180002754520 99.2 True relocation, scaffold gap is present, inconsistency = -147965 6442249 6442840 243791 243200 CM091751.1 scf7180002754520 99.8 True fake: scaffold gap size wrong estimation (local) 6315401 6323743 369922 361630 CM091751.1 scf7180002754520 98.96 True indel: indel (> 5bp) 6275272 6315316 410150 370023 CM091751.1 scf7180002754520 99.19 True fake: scaffold gap size wrong estimation (extensive) 6269607 6275286 423829 418163 CM091751.1 scf7180002754520 99.37 True CONTIG scf7180002754520 428981 misassembled 165362 183614 1 17979 CM091753.1 scf7180002754521 98.31 True CONTIG scf7180002754521 18023 correct 6188321 6210636 22239 1 CM091762.1 scf7180002754522 98.45 True indel: indel (<= 5bp) 6152675 6188220 57893 22343 CM091762.1 scf7180002754522 99.44 True relocation, scaffold gap is present, inconsistency = -38518 6107130 6152100 141710 96986 CM091762.1 scf7180002754522 98.96 True CONTIG scf7180002754522 141710 misassembled 14143982 14148500 1 4519 CM091755.1 scf7180002754523 99.47 True local misassembly 14148877 14154005 4612 9737 CM091755.1 scf7180002754523 99.11 True local misassembly 14155076 14166677 10096 21579 CM091755.1 scf7180002754523 98.24 True fake: scaffold gap size wrong estimation (local) 14166902 14173163 21765 28033 CM091755.1 scf7180002754523 99.23 True fake: scaffold gap size wrong estimation (local) 14173406 14203772 28084 58479 CM091755.1 scf7180002754523 99.04 True relocation, inconsistency = 12560 14216333 14230322 58480 72089 CM091755.1 scf7180002754523 96.02 True CONTIG scf7180002754523 72837 misassembled 9625458 9705251 79903 426 CM091757.1 scf7180002754524 98.95 True fake: scaffold gap size wrong estimation (local) 9583265 9625327 122589 80591 CM091757.1 scf7180002754524 99.32 True relocation, scaffold gap is present, inconsistency = -42075 9560996 9583351 186811 164578 CM091757.1 scf7180002754524 99.13 True fake: scaffold gap size wrong estimation (extensive) 9548186 9561010 208954 196136 CM091757.1 scf7180002754524 99.2 True translocation, scaffold gap is present 761967 814605 261610 208975 CM091763.1 scf7180002754524 99.94 True relocation, scaffold gap is present, inconsistency = -53121 719482 761866 357244 314832 CM091763.1 scf7180002754524 99.88 True fake: scaffold gap size wrong estimation (local) 676538 719493 401111 358155 CM091763.1 scf7180002754524 99.9 True relocation, scaffold gap is present, inconsistency = -42022 664408 676182 455316 443489 CM091763.1 scf7180002754524 99.56 True fake: scaffold gap size wrong estimation (local) 633320 664040 486586 455875 CM091763.1 scf7180002754524 99.85 True fake: scaffold gap size wrong estimation (extensive) 622909 631536 505790 497165 CM091763.1 scf7180002754524 99.94 True relocation, scaffold gap is present, inconsistency = -14073 631814 632434 510958 510338 CM091763.1 scf7180002754524 99.84 True local misassembly 632631 633302 511650 510979 CM091763.1 scf7180002754524 99.85 True fake: scaffold gap size wrong estimation (extensive) 591250 621903 544950 515222 CM091763.1 scf7180002754524 96.57 True fake: scaffold gap size wrong estimation (local) 582372 590584 559691 551475 CM091763.1 scf7180002754524 99.68 True fake: scaffold gap size wrong estimation (local) 454170 582342 692865 564018 CM091763.1 scf7180002754524 99.66 True fake: scaffold gap size wrong estimation (local) 453209 453857 695062 694414 CM091763.1 scf7180002754524 100.0 True fake: scaffold gap size wrong estimation (local) 441808 453111 706476 695157 CM091763.1 scf7180002754524 99.66 True fake: scaffold gap size wrong estimation (local) 378824 441400 788699 710886 CM091763.1 scf7180002754524 97.89 True fake: scaffold gap size wrong estimation (local) 375960 378598 791625 789011 CM091763.1 scf7180002754524 99.01 True CONTIG scf7180002754524 791625 misassembled 14141413 14141912 164 663 CM091752.1 scf7180002754525 99.2 True translocation 6819341 6899324 664 80683 CM091764.1 scf7180002754525 99.29 True fake: scaffold gap size wrong estimation (local) 6899440 7121293 80766 302545 CM091764.1 scf7180002754525 99.24 True fake: scaffold gap size wrong estimation (local) 7121080 7258690 304085 441849 CM091764.1 scf7180002754525 99.49 True relocation, scaffold gap is present, inconsistency = -31575 7258698 7324233 473432 538680 CM091764.1 scf7180002754525 99.02 True relocation, scaffold gap is present, inconsistency = -11444 7324254 7433206 550145 658348 CM091764.1 scf7180002754525 98.98 True relocation, scaffold gap is present, inconsistency = -26523 7431992 7432940 683657 684598 CM091764.1 scf7180002754525 95.51 True CONTIG scf7180002754525 684970 misassembled 9231453 9454067 222595 1 CM091757.1 scf7180002754526 99.45 True relocation, scaffold gap is present, inconsistency = -84328 9206308 9231100 332047 307276 CM091757.1 scf7180002754526 99.53 True relocation, scaffold gap is present, inconsistency = -24598 9129897 9206297 433122 356656 CM091757.1 scf7180002754526 99.43 True relocation, scaffold gap is present, inconsistency = -65465 9127124 9129028 501360 499456 CM091757.1 scf7180002754526 99.69 True indel: indel (<= 5bp) 9126297 9127122 502186 501361 CM091757.1 scf7180002754526 99.39 True indel: indel (> 5bp) 9125129 9125839 503367 502657 CM091757.1 scf7180002754526 99.3 True indel: indel (> 5bp) 9123925 9124914 504583 503594 CM091757.1 scf7180002754526 99.6 True indel: indel (<= 5bp) 9122794 9123454 505713 505053 CM091757.1 scf7180002754526 99.55 True fake: scaffold gap size wrong estimation (local) 8977057 9122717 657435 512313 CM091757.1 scf7180002754526 98.91 True indel: indel (> 5bp) 8917975 8976973 716388 657502 CM091757.1 scf7180002754526 99.24 True indel: indel (> 5bp) 8635203 8917925 995306 716469 CM091757.1 scf7180002754526 98.09 True indel: indel (> 5bp) 8599898 8635093 1030617 995396 CM091757.1 scf7180002754526 99.56 True CONTIG scf7180002754526 1030617 misassembled 5574939 5581977 7046 1 CM091767.1 scf7180002754527 97.96 True fake: scaffold gap size wrong estimation (local) 5574038 5574580 7932 7390 CM091767.1 scf7180002754527 98.9 True indel: indel (<= 5bp) 5573507 5574037 8466 7936 CM091767.1 scf7180002754527 98.87 True local misassembly 5572295 5572843 9015 8467 CM091767.1 scf7180002754527 99.09 True indel: indel (> 5bp) 5571261 5572279 10034 9016 CM091767.1 scf7180002754527 99.21 True indel: indel (> 5bp) 5570280 5571253 11008 10035 CM091767.1 scf7180002754527 99.79 True fake: scaffold gap size wrong estimation (local) 5566644 5569065 14642 12221 CM091767.1 scf7180002754527 99.55 True fake: scaffold gap size wrong estimation (local) 5564115 5565663 16547 14999 CM091767.1 scf7180002754527 99.81 True indel: indel (<= 5bp) 5563328 5564114 17335 16549 CM091767.1 scf7180002754527 98.98 True indel: indel (<= 5bp) 5562494 5563326 18168 17336 CM091767.1 scf7180002754527 99.52 True indel: indel (> 5bp) 5561506 5562186 19164 18484 CM091767.1 scf7180002754527 99.71 True indel: stretch of mismatches 5558508 5561036 22162 19634 CM091767.1 scf7180002754527 99.6 True indel: indel (<= 5bp) 5557823 5558506 22846 22163 CM091767.1 scf7180002754527 95.76 True indel: indel (<= 5bp) 5557130 5557817 23534 22847 CM091767.1 scf7180002754527 100.0 True fake: scaffold gap size wrong estimation (local) 5541734 5555630 39662 24261 CM091767.1 scf7180002754527 98.73 True fake: scaffold gap size wrong estimation (local) 5523947 5541646 57459 39760 CM091767.1 scf7180002754527 99.25 True local misassembly 5318717 5523702 262042 57615 CM091767.1 scf7180002754527 99.49 True fake: scaffold gap size wrong estimation (local) 5271024 5318599 309760 262146 CM091767.1 scf7180002754527 99.65 True CONTIG scf7180002754527 309772 correct 12743010 12762326 19813 486 CM091760.1 scf7180002754528 99.19 True indel: indel (> 5bp) 12697151 12742960 65739 19872 CM091760.1 scf7180002754528 99.14 True fake: scaffold gap size wrong estimation (local) 12684270 12696674 77868 65977 CM091760.1 scf7180002754528 95.29 True indel: indel (<= 5bp) 12648305 12684265 113886 77869 CM091760.1 scf7180002754528 99.23 True relocation, scaffold gap is present, inconsistency = -48395 12643931 12648016 166650 162570 CM091760.1 scf7180002754528 99.41 True fake: scaffold gap size wrong estimation (local) 12611261 12643912 203260 170543 CM091760.1 scf7180002754528 99.18 True fake: scaffold gap size wrong estimation (local) 12593280 12611228 225069 207154 CM091760.1 scf7180002754528 99.1 True relocation, scaffold gap is present, inconsistency = -12811 12568090 12593260 262983 237900 CM091760.1 scf7180002754528 99.08 True indel: indel (> 5bp) 12484118 12568022 347146 263058 CM091760.1 scf7180002754528 99.25 True fake: scaffold gap size wrong estimation (local) 12439838 12484153 394303 349963 CM091760.1 scf7180002754528 99.33 True relocation, scaffold gap is present, inconsistency = -43905 12430369 12439615 447679 438431 CM091760.1 scf7180002754528 99.31 True fake: scaffold gap size wrong estimation (extensive) 12416694 12430406 470456 456836 CM091760.1 scf7180002754528 98.74 True relocation, scaffold gap is present, inconsistency = -10052 12382571 12416713 514280 480489 CM091760.1 scf7180002754528 98.15 True relocation, scaffold gap is present, inconsistency = -12881 12349051 12382575 560732 527157 CM091760.1 scf7180002754528 98.62 True indel: indel (> 5bp) 12342753 12348973 566987 560754 CM091760.1 scf7180002754528 99.28 True fake: scaffold gap size wrong estimation (local) 12334896 12341724 580650 573927 CM091760.1 scf7180002754528 97.5 True fake: scaffold gap size wrong estimation (local) 12293562 12334897 629848 586373 CM091760.1 scf7180002754528 97.82 True relocation, scaffold gap is present, inconsistency = -25674 12283335 12293482 665725 655602 CM091760.1 scf7180002754528 99.18 True fake: scaffold gap size wrong estimation (local) 12248726 12283227 700473 665814 CM091760.1 scf7180002754528 98.32 True fake: not a misassembly (possible transposable element) 2453644 2455823 705223 707397 CM091760.1 scf7180002754528 99.68 True fake: not a misassembly (possible transposable element) 12239065 12247811 716165 707418 CM091760.1 scf7180002754528 99.94 True relocation, scaffold gap is present, inconsistency = 9762143 2455789 2476901 716186 737304 CM091760.1 scf7180002754528 99.88 True relocation, scaffold gap is present, inconsistency = 9694941 12171863 12238114 803576 737325 CM091760.1 scf7180002754528 99.78 True indel: indel (> 5bp) 12120545 12171776 854193 803637 CM091760.1 scf7180002754528 98.13 True fake: scaffold gap size wrong estimation (local) 12111818 12120204 863120 854760 CM091760.1 scf7180002754528 99.3 True fake: scaffold gap size wrong estimation (extensive) 12110826 12111511 871607 870922 CM091760.1 scf7180002754528 98.69 True fake: scaffold gap size wrong estimation (local) 12109377 12110436 873035 871976 CM091760.1 scf7180002754528 98.68 True indel: indel (<= 5bp) 12108400 12109375 874011 873036 CM091760.1 scf7180002754528 99.49 True fake: scaffold gap size wrong estimation (local) 12106656 12108052 875773 874377 CM091760.1 scf7180002754528 98.57 True local misassembly 12105258 12106655 877342 875945 CM091760.1 scf7180002754528 98.71 True indel: indel (> 5bp) 12104452 12105257 878155 877350 CM091760.1 scf7180002754528 99.88 True indel: indel (<= 5bp) 12103683 12104451 878925 878157 CM091760.1 scf7180002754528 99.87 True fake: scaffold gap size wrong estimation (local) 12102168 12102872 880146 879442 CM091760.1 scf7180002754528 99.43 True fake: scaffold gap size wrong estimation (local) 12083879 12101209 898023 880737 CM091760.1 scf7180002754528 99.42 True relocation, scaffold gap is present, inconsistency = -11221 12066769 12082834 926289 910289 CM091760.1 scf7180002754528 98.48 True CONTIG scf7180002754528 926289 misassembled 2848813 2850017 569 1773 CM091768.1 scf7180002754529 99.25 True indel: indel (> 5bp) 2850095 2851609 1837 3351 CM091768.1 scf7180002754529 99.41 True indel: indel (<= 5bp) 2851610 2852668 3356 4414 CM091768.1 scf7180002754529 98.21 True fake: scaffold gap size wrong estimation (local) 2855546 2856059 5431 5944 CM091768.1 scf7180002754529 99.42 True indel: indel (> 5bp) 2856230 2857329 6105 7204 CM091768.1 scf7180002754529 98.73 True local misassembly 2858085 2859511 7969 9395 CM091768.1 scf7180002754529 99.16 True local misassembly 2860540 2861040 9838 10338 CM091768.1 scf7180002754529 99.8 True indel: indel (> 5bp) 2861041 2862934 10348 12241 CM091768.1 scf7180002754529 99.37 True local misassembly 2864397 2867870 12838 16311 CM091768.1 scf7180002754529 99.68 True indel: indel (> 5bp) 2868117 2870885 16520 19288 CM091768.1 scf7180002754529 99.78 True local misassembly 2871439 2872148 19851 20560 CM091768.1 scf7180002754529 99.3 True indel: indel (> 5bp) 2872225 2873118 20606 21499 CM091768.1 scf7180002754529 98.99 True local misassembly 2874047 2875014 21869 22836 CM091768.1 scf7180002754529 99.59 True indel: indel (<= 5bp) 2875146 2877268 22966 25088 CM091768.1 scf7180002754529 99.95 True indel: indel (<= 5bp) 2877269 2884553 25090 32374 CM091768.1 scf7180002754529 99.7 True indel: indel (<= 5bp) 2884556 2885883 32375 33702 CM091768.1 scf7180002754529 99.25 True relocation, scaffold gap is present, inconsistency = -26157 2886236 2908312 60212 82289 CM091768.1 scf7180002754529 99.37 True CONTIG scf7180002754529 82289 misassembled 11296343 11299127 1 2785 CM091765.1 scf7180002754530 99.93 True fake: not a misassembly (possible transposable element) 11359038 11359869 4063 3232 CM091765.1 scf7180002754530 100.0 True fake: not a misassembly (possible transposable element) 11299251 11303584 4474 8805 CM091765.1 scf7180002754530 99.54 True CONTIG scf7180002754530 8805 correct 834215 862845 286 29014 CM091756.1 scf7180002754531 99.24 True indel: indel (> 5bp) 862896 895344 29078 61553 CM091756.1 scf7180002754531 99.59 True translocation 14099579 14143330 104747 61554 CM091755.1 scf7180002754531 97.72 True fake: scaffold gap size wrong estimation (local) 14018209 14099061 185105 104849 CM091755.1 scf7180002754531 98.33 True fake: scaffold gap size wrong estimation (local) 14001990 14018010 201261 185158 CM091755.1 scf7180002754531 98.81 True indel: indel (> 5bp) 13995939 14001948 207310 201318 CM091755.1 scf7180002754531 98.72 True indel: indel (<= 5bp) 13968807 13995820 234238 207431 CM091755.1 scf7180002754531 98.18 True fake: scaffold gap size wrong estimation (local) 13933568 13968673 268981 234349 CM091755.1 scf7180002754531 97.55 True translocation, scaffold gap is present 13919256 13927065 290887 298683 CM091751.1 scf7180002754531 99.23 True fake: scaffold gap size wrong estimation (local) 13927344 13936315 298952 307928 CM091751.1 scf7180002754531 99.33 True translocation, scaffold gap is present 13894174 13933819 347625 307954 CM091755.1 scf7180002754531 99.3 True translocation 13936972 13977481 347690 388292 CM091751.1 scf7180002754531 99.45 True translocation, scaffold gap is present 4022079 4040143 420087 402062 CM091759.1 scf7180002754531 98.96 True fake: scaffold gap size wrong estimation (local) 4009809 4020857 432804 421627 CM091759.1 scf7180002754531 98.58 True translocation, scaffold gap is present 13977373 14004420 432825 459809 CM091751.1 scf7180002754531 99.32 True local misassembly 14004489 14023173 460021 478662 CM091751.1 scf7180002754531 99.03 True translocation, scaffold gap is present 3994460 4009930 494238 478683 CM091759.1 scf7180002754531 98.52 True indel: indel (> 5bp) 3944356 3994399 544319 494321 CM091759.1 scf7180002754531 99.38 True translocation, scaffold gap is present 14023055 14166268 544340 687651 CM091751.1 scf7180002754531 99.33 True fake: scaffold gap size wrong estimation (local) 14167834 14222160 688779 743006 CM091751.1 scf7180002754531 99.61 True indel: indel (> 5bp) 14222609 14348959 743477 868705 CM091751.1 scf7180002754531 98.43 True fake: scaffold gap size wrong estimation (local) 14349518 14445850 868867 965126 CM091751.1 scf7180002754531 99.19 True fake: scaffold gap size wrong estimation (local) 14445859 14446544 966870 967555 CM091751.1 scf7180002754531 99.56 True local misassembly 14447334 14451016 968149 971866 CM091751.1 scf7180002754531 98.56 True fake: scaffold gap size wrong estimation (local) 14451785 14453309 971974 973498 CM091751.1 scf7180002754531 99.54 True indel: indel (> 5bp) 14453310 14454651 973507 974848 CM091751.1 scf7180002754531 99.7 True local misassembly 14454891 14456028 974849 975986 CM091751.1 scf7180002754531 99.3 True local misassembly 14456221 14457622 976603 978004 CM091751.1 scf7180002754531 99.5 True fake: scaffold gap size wrong estimation (local) 14457664 14458279 978070 978685 CM091751.1 scf7180002754531 99.35 True indel: stretch of mismatches 14458436 14460016 978842 980422 CM091751.1 scf7180002754531 99.81 True indel: indel (<= 5bp) 14460018 14462853 980423 983258 CM091751.1 scf7180002754531 99.15 True fake: scaffold gap size wrong estimation (local) 14462854 14463689 983296 984131 CM091751.1 scf7180002754531 98.68 True indel: indel (<= 5bp) 14463691 14467911 984132 988352 CM091751.1 scf7180002754531 99.24 True indel: indel (> 5bp) 14467912 14469108 988377 989573 CM091751.1 scf7180002754531 99.83 True fake: scaffold gap size wrong estimation (local) 14470927 14471742 990311 991126 CM091751.1 scf7180002754531 97.43 True fake: scaffold gap size wrong estimation (local) 14471945 14472800 991324 992179 CM091751.1 scf7180002754531 99.88 True fake: scaffold gap size wrong estimation (local) 14473116 14474525 992508 993917 CM091751.1 scf7180002754531 99.79 True indel: indel (<= 5bp) 14474526 14475338 993922 994734 CM091751.1 scf7180002754531 100.0 True fake: scaffold gap size wrong estimation (local) 14475817 14479288 995228 998699 CM091751.1 scf7180002754531 99.65 True indel: indel (> 5bp) 14479311 14480199 998700 999588 CM091751.1 scf7180002754531 99.21 True indel: indel (<= 5bp) 14480200 14480759 999590 1000149 CM091751.1 scf7180002754531 99.64 True indel: indel (<= 5bp) 14480760 14482213 1000151 1001604 CM091751.1 scf7180002754531 99.93 True fake: scaffold gap size wrong estimation (local) 14482677 14483237 1002082 1002642 CM091751.1 scf7180002754531 99.82 True local misassembly 14483828 14484720 1003231 1004123 CM091751.1 scf7180002754531 99.66 True local misassembly 14485867 14490380 1005140 1009660 CM091751.1 scf7180002754531 99.4 True indel: indel (> 5bp) 14490718 14491317 1009985 1010584 CM091751.1 scf7180002754531 99.0 True local misassembly 14491932 14492550 1011198 1011816 CM091751.1 scf7180002754531 99.68 True local misassembly 14493489 14494317 1012609 1013437 CM091751.1 scf7180002754531 99.52 True indel: indel (<= 5bp) 14494520 14495957 1013642 1015079 CM091751.1 scf7180002754531 99.79 True indel: indel (> 5bp) 14495958 14496773 1015088 1015903 CM091751.1 scf7180002754531 98.65 True indel: indel (<= 5bp) 14497096 14498228 1016225 1017357 CM091751.1 scf7180002754531 99.21 True fake: scaffold gap size wrong estimation (local) 14499162 14500211 1018306 1019355 CM091751.1 scf7180002754531 99.81 True fake: scaffold gap size wrong estimation (local) 14501321 14502404 1020301 1021384 CM091751.1 scf7180002754531 100.0 True local misassembly 14503605 14504335 1021385 1022115 CM091751.1 scf7180002754531 95.49 True indel: stretch of mismatches 14504612 14505214 1022392 1022994 CM091751.1 scf7180002754531 99.5 True indel: stretch of mismatches 14505496 14506854 1023276 1024634 CM091751.1 scf7180002754531 99.48 True indel: indel (<= 5bp) 14507262 14508365 1025040 1026143 CM091751.1 scf7180002754531 99.37 True indel: indel (<= 5bp) 14508366 14508978 1026145 1026757 CM091751.1 scf7180002754531 99.51 True indel: indel (<= 5bp) 14508979 14510353 1026759 1028133 CM091751.1 scf7180002754531 99.49 True indel: indel (<= 5bp) 14510686 14511254 1028469 1029037 CM091751.1 scf7180002754531 99.65 True indel: indel (<= 5bp) 14511255 14511945 1029043 1029733 CM091751.1 scf7180002754531 99.57 True indel: indel (<= 5bp) 14511946 14514422 1029736 1032212 CM091751.1 scf7180002754531 99.8 True local misassembly 14514979 14517354 1032769 1035144 CM091751.1 scf7180002754531 99.07 True indel: indel (<= 5bp) 14517614 14518209 1035407 1036002 CM091751.1 scf7180002754531 99.5 True fake: scaffold gap size wrong estimation (local) 14520724 14525368 1036053 1040698 CM091751.1 scf7180002754531 99.61 True local misassembly 14518898 14520679 1040719 1042503 CM091751.1 scf7180002754531 99.33 True fake: scaffold gap size wrong estimation (local) 14526350 14529060 1044331 1047041 CM091751.1 scf7180002754531 99.78 True fake: scaffold gap size wrong estimation (local) 14529616 14530137 1047567 1048088 CM091751.1 scf7180002754531 98.85 True fake: scaffold gap size wrong estimation (local) 14531746 14533123 1050121 1051498 CM091751.1 scf7180002754531 99.78 True indel: indel (<= 5bp) 14533124 14533941 1051500 1052317 CM091751.1 scf7180002754531 99.88 True fake: scaffold gap size wrong estimation (local) 14534631 14541651 1052801 1059887 CM091751.1 scf7180002754531 98.57 True fake: scaffold gap size wrong estimation (local) 14542001 14542744 1061412 1062155 CM091751.1 scf7180002754531 99.87 True fake: scaffold gap size wrong estimation (local) 14544411 14576140 1063492 1094496 CM091751.1 scf7180002754531 95.56 True local misassembly 14578639 14580446 1095281 1097088 CM091751.1 scf7180002754531 99.5 True local misassembly 14581176 14582989 1097089 1098902 CM091751.1 scf7180002754531 99.5 True indel: indel (> 5bp) 14583408 14584444 1099295 1100331 CM091751.1 scf7180002754531 99.42 True local misassembly 14584865 14585507 1100554 1101196 CM091751.1 scf7180002754531 95.65 True indel: indel (<= 5bp) 14585508 14590189 1101198 1105879 CM091751.1 scf7180002754531 99.68 True indel: indel (> 5bp) 14590284 14591100 1105984 1106800 CM091751.1 scf7180002754531 99.39 True fake: scaffold gap size wrong estimation (local) 14591766 14593115 1106847 1108196 CM091751.1 scf7180002754531 99.7 True indel: indel (<= 5bp) 14593476 14595947 1108559 1111030 CM091751.1 scf7180002754531 99.15 True local misassembly 14596858 14597606 1111369 1112117 CM091751.1 scf7180002754531 99.6 True fake: scaffold gap size wrong estimation (local) 14597607 14598595 1112136 1113124 CM091751.1 scf7180002754531 99.49 True indel: indel (> 5bp) 14599078 14602221 1113616 1116759 CM091751.1 scf7180002754531 99.52 True indel: indel (<= 5bp) 14602222 14603693 1116761 1118232 CM091751.1 scf7180002754531 99.59 True CONTIG scf7180002754531 1119224 misassembled 10702512 10707527 1 5015 CM091765.1 scf7180002754532 99.86 True fake: scaffold gap size wrong estimation (local) 10708003 10728189 5536 25714 CM091765.1 scf7180002754532 99.89 True fake: scaffold gap size wrong estimation (local) 10728952 10733014 31554 35617 CM091765.1 scf7180002754532 99.95 True fake: scaffold gap size wrong estimation (local) 10733062 10751071 39715 57725 CM091765.1 scf7180002754532 99.98 True CONTIG scf7180002754532 57725 correct 15472249 15477919 1 5402 CM091757.1 scf7180002754533 95.21 True CONTIG scf7180002754533 5566 correct 230082 236014 5827 1 CM091761.1 scf7180002754534 99.61 True fake: not a misassembly (possible transposable element) 10223624 10227845 5850 10075 CM091765.1 scf7180002754534 99.57 True fake: not a misassembly (possible transposable element) 225906 228049 14749 12607 CM091761.1 scf7180002754534 99.72 True translocation, scaffold gap is present 10227831 10229082 14770 16021 CM091765.1 scf7180002754534 99.84 True local misassembly 10229618 10233075 16022 19479 CM091765.1 scf7180002754534 99.28 True CONTIG scf7180002754534 21592 misassembled 7895444 7896857 1 1414 CM091767.1 scf7180002754535 99.86 True relocation, scaffold gap is present, inconsistency = 8456 7885905 7886967 2497 1435 CM091767.1 scf7180002754535 100.0 True fake: scaffold gap size wrong estimation (local) 7882194 7883938 6639 4880 CM091767.1 scf7180002754535 98.52 True CONTIG scf7180002754535 6639 misassembled 11116178 11125966 9791 1 CM091766.1 scf7180002754536 99.95 True fake: scaffold gap size wrong estimation (local) 11093589 11115174 34706 13120 CM091766.1 scf7180002754536 99.87 True relocation, scaffold gap is present, inconsistency = -17865 11061799 11093598 84147 52562 CM091766.1 scf7180002754536 99.12 True fake: scaffold gap size wrong estimation (extensive) 11044856 11060663 109904 94042 CM091766.1 scf7180002754536 99.26 True indel: indel (<= 5bp) 11033724 11044790 121036 109966 CM091766.1 scf7180002754536 99.67 True fake: scaffold gap size wrong estimation (local) 11018620 11032669 136054 121979 CM091766.1 scf7180002754536 99.68 True CONTIG scf7180002754536 136294 misassembled 960824 961466 428 1070 CM091764.1 scf7180002754537 100.0 True indel: indel (<= 5bp) 961468 962955 1071 2558 CM091764.1 scf7180002754537 99.93 True indel: indel (<= 5bp) 962957 963675 2559 3277 CM091764.1 scf7180002754537 99.72 True local misassembly 964074 966269 3278 5473 CM091764.1 scf7180002754537 99.09 True fake: scaffold gap size wrong estimation (local) 969224 975760 11252 17778 CM091764.1 scf7180002754537 99.68 True CONTIG scf7180002754537 17778 correct 3456467 3516149 64080 4411 CM091753.1 scf7180002754538 99.74 True fake: scaffold gap size wrong estimation (local) 3354632 3456173 165749 64256 CM091753.1 scf7180002754538 99.77 True relocation, scaffold gap is present, inconsistency = -54794 3407210 3407738 167975 167437 CM091753.1 scf7180002754538 100.0 True fake: scaffold gap size wrong estimation (local) 3347331 3354554 227782 220682 CM091753.1 scf7180002754538 98.07 True local misassembly 3342239 3343705 229249 227783 CM091753.1 scf7180002754538 99.8 True fake: scaffold gap size wrong estimation (extensive) 3341788 3342335 238047 237500 CM091753.1 scf7180002754538 100.0 True fake: scaffold gap size wrong estimation (local) 3339000 3341745 241438 238693 CM091753.1 scf7180002754538 99.64 True CONTIG scf7180002754538 241438 misassembled 11140157 11142492 58 2393 CM091765.1 scf7180002754539 99.96 True fake: scaffold gap size wrong estimation (local) 11143381 11148754 3159 8532 CM091765.1 scf7180002754539 99.98 True CONTIG scf7180002754539 12296 correct 13553391 13570895 17554 1 CM091758.1 scf7180002754540 99.81 True fake: scaffold gap size wrong estimation (local) 13537930 13551870 31516 17575 CM091758.1 scf7180002754540 99.92 True relocation, scaffold gap is present, inconsistency = -13489 13529725 13536721 53210 46214 CM091758.1 scf7180002754540 99.93 True CONTIG scf7180002754540 58904 misassembled 1316066 1333415 16814 1 CM091755.1 scf7180002754541 96.78 True indel: indel (<= 5bp) 1314515 1316051 18370 16830 CM091755.1 scf7180002754541 98.7 True CONTIG scf7180002754541 18370 correct 17408405 17417244 1 8844 CM091751.1 scf7180002754542 99.63 True fake: scaffold gap size wrong estimation (local) 17417451 17418615 8979 10119 CM091751.1 scf7180002754542 97.55 True fake: scaffold gap size wrong estimation (local) 17419808 17429404 11665 21263 CM091751.1 scf7180002754542 99.9 True CONTIG scf7180002754542 21278 correct 103217 109062 1 5846 CM091763.1 scf7180002754543 99.76 True fake: scaffold gap size wrong estimation (local) 111534 116621 7594 12461 CM091763.1 scf7180002754543 95.46 True fake: scaffold gap size wrong estimation (local) 116959 119155 14025 16220 CM091763.1 scf7180002754543 99.77 True fake: scaffold gap size wrong estimation (local) 122607 136031 18500 31928 CM091763.1 scf7180002754543 99.87 True CONTIG scf7180002754543 31928 correct 367669 370223 2528 1 CM091760.1 scf7180002754544 98.83 True fake: scaffold gap size wrong estimation (local) 357366 367472 13046 2938 CM091760.1 scf7180002754544 99.45 True fake: scaffold gap size wrong estimation (local) 324869 357348 51408 18878 CM091760.1 scf7180002754544 99.73 True fake: scaffold gap size wrong estimation (local) 303350 324705 72834 51511 CM091760.1 scf7180002754544 99.77 True fake: scaffold gap size wrong estimation (local) 285333 302977 94979 77308 CM091760.1 scf7180002754544 99.78 True indel: indel (<= 5bp) 253088 285271 127212 95045 CM091760.1 scf7180002754544 99.86 True relocation, scaffold gap is present, inconsistency = -35139 243690 252921 171749 162518 CM091760.1 scf7180002754544 99.98 True fake: scaffold gap size wrong estimation (extensive) 243067 243757 181633 180876 CM091760.1 scf7180002754544 96.1 True fake: scaffold gap size wrong estimation (local) 240539 242854 184559 182244 CM091760.1 scf7180002754544 99.91 True CONTIG scf7180002754544 184559 misassembled 712879 724505 1 11488 CM091764.1 scf7180002754545 98.77 True fake: scaffold gap size wrong estimation (local) 724724 761738 11644 48644 CM091764.1 scf7180002754545 99.73 True relocation, scaffold gap is present, inconsistency = -35402 762714 776432 85022 98715 CM091764.1 scf7180002754545 99.68 True CONTIG scf7180002754545 98715 misassembled 438101 467940 1 29844 CM091755.1 scf7180002754546 99.77 True translocation 740542 745857 29845 35229 CM091754.1 scf7180002754546 97.19 True relocation, scaffold gap is present, inconsistency = -7985 737894 740222 35251 37565 CM091754.1 scf7180002754546 98.67 True fake: scaffold gap size wrong estimation (local) 747059 767393 45466 65860 CM091754.1 scf7180002754546 98.28 True local misassembly 767565 771886 66208 70529 CM091754.1 scf7180002754546 98.82 True translocation 12435522 12436246 71270 70544 CM091752.1 scf7180002754546 97.8 True relocation, scaffold gap is present, inconsistency = -3240165 15661116 15661833 85841 85124 CM091752.1 scf7180002754546 98.75 True CONTIG scf7180002754546 85841 misassembled 5262822 5271567 116 8853 CM091754.1 scf7180002754547 99.89 True fake: scaffold gap size wrong estimation (local) 5272007 5303422 9384 40322 CM091754.1 scf7180002754547 98.42 True fake: scaffold gap size wrong estimation (local) 5304337 5316167 40872 52701 CM091754.1 scf7180002754547 99.96 True fake: scaffold gap size wrong estimation (local) 5317053 5333224 54351 70530 CM091754.1 scf7180002754547 99.91 True relocation, scaffold gap is present, inconsistency = -16478 5335047 5336738 88831 90522 CM091754.1 scf7180002754547 99.82 True CONTIG scf7180002754547 90522 misassembled 644797 651823 7175 150 CM091753.1 scf7180002754548 99.81 True relocation, inconsistency = 14058 605120 630738 32759 7176 CM091753.1 scf7180002754548 99.8 True translocation 214075 224941 43743 32892 CM091761.1 scf7180002754548 99.63 True fake: scaffold gap size wrong estimation (local) 211241 213505 46571 44307 CM091761.1 scf7180002754548 99.91 True fake: scaffold gap size wrong estimation (local) 205747 211240 55781 50288 CM091761.1 scf7180002754548 99.95 True indel: indel (<= 5bp) 202730 205746 58799 55783 CM091761.1 scf7180002754548 99.97 True indel: indel (<= 5bp) 201995 202729 59535 58801 CM091761.1 scf7180002754548 99.86 True indel: indel (<= 5bp) 200946 201994 60585 59537 CM091761.1 scf7180002754548 100.0 True indel: indel (<= 5bp) 185596 200727 75949 60807 CM091761.1 scf7180002754548 99.83 True fake: scaffold gap size wrong estimation (local) 177917 185380 83595 76123 CM091761.1 scf7180002754548 99.91 True indel: indel (> 5bp) 174273 177794 87297 83775 CM091761.1 scf7180002754548 99.77 True CONTIG scf7180002754548 87506 misassembled 8287254 8288855 591 2219 CM091767.1 scf7180002754549 99.5 True translocation, scaffold gap is present 1888372 1990918 105370 2769 CM091763.1 scf7180002754549 99.61 True fake: scaffold gap size wrong estimation (local) 1866974 1887919 128456 107554 CM091763.1 scf7180002754549 99.04 True CONTIG scf7180002754549 148958 misassembled 3418841 3453341 12 34314 CM091768.1 scf7180002754550 98.79 True relocation, scaffold gap is present, inconsistency = -22584 3454306 3459913 57863 63466 CM091768.1 scf7180002754550 97.98 True fake: scaffold gap size wrong estimation (local) 3459857 3476947 68466 86189 CM091768.1 scf7180002754550 95.81 True CONTIG scf7180002754550 86494 misassembled 509137 588565 1 79405 CM091758.1 scf7180002754551 99.84 True relocation, scaffold gap is present, inconsistency = -64249 588834 705020 143923 260129 CM091758.1 scf7180002754551 99.87 True indel: indel (> 5bp) 705046 709233 260177 264377 CM091758.1 scf7180002754551 99.33 True relocation, scaffold gap is present, inconsistency = -107215 668407 669004 330766 331370 CM091758.1 scf7180002754551 100.0 True fake: scaffold gap size wrong estimation (local) 709271 717045 371843 379573 CM091758.1 scf7180002754551 99.08 True fake: scaffold gap size wrong estimation (local) 717191 738078 379692 399911 CM091758.1 scf7180002754551 96.02 True relocation, scaffold gap is present, inconsistency = -18221 738082 807274 418136 487169 CM091758.1 scf7180002754551 99.2 True fake: scaffold gap size wrong estimation (local) 807966 838981 487734 518140 CM091758.1 scf7180002754551 96.84 True fake: scaffold gap size wrong estimation (local) 839899 883913 518161 561251 CM091758.1 scf7180002754551 96.76 True fake: scaffold gap size wrong estimation (local) 883954 907232 565058 588015 CM091758.1 scf7180002754551 95.49 True indel: indel (<= 5bp) 907303 916000 588087 596864 CM091758.1 scf7180002754551 99.15 True indel: indel (> 5bp) 916088 942707 596946 623521 CM091758.1 scf7180002754551 99.11 True CONTIG scf7180002754551 623521 misassembled 9259992 9270175 1 10207 CM091767.1 scf7180002754552 99.08 True fake: scaffold gap size wrong estimation (local) 9271210 9272776 10987 12553 CM091767.1 scf7180002754552 99.46 True translocation 15621676 15624728 15606 12554 CM091757.1 scf7180002754552 98.92 True indel: indel (<= 5bp) 15618478 15621637 18803 15644 CM091757.1 scf7180002754552 99.94 True translocation, scaffold gap is present 8782629 8787764 20332 25480 CM091767.1 scf7180002754552 99.71 True translocation, scaffold gap is present 15614628 15617792 31041 27878 CM091757.1 scf7180002754552 99.94 True fake: not a misassembly (possible transposable element) 8787930 8790752 33895 36719 CM091767.1 scf7180002754552 99.47 True fake: not a misassembly (possible transposable element) 15612097 15613540 38183 36740 CM091757.1 scf7180002754552 98.61 True local misassembly 15610669 15611637 39240 38272 CM091757.1 scf7180002754552 100.0 True fake: scaffold gap size wrong estimation (local) 15609142 15610392 41603 40352 CM091757.1 scf7180002754552 99.92 True fake: scaffold gap size wrong estimation (local) 15602393 15607891 48277 42778 CM091757.1 scf7180002754552 99.73 True translocation 1811463 1812847 49662 48278 CM091764.1 scf7180002754552 99.32 True translocation, scaffold gap is present 15608412 15609225 50496 49683 CM091757.1 scf7180002754552 99.88 True fake: scaffold gap size wrong estimation (local) 15607843 15608411 51240 50672 CM091757.1 scf7180002754552 97.01 True CONTIG scf7180002754552 56593 misassembled 6381616 6494616 113103 14 CM091761.1 scf7180002754553 99.57 True relocation, scaffold gap is present, inconsistency = -19523 6367347 6374364 149832 139878 CM091761.1 scf7180002754553 98.57 True translocation 7061055 7062935 151724 149833 CM091758.1 scf7180002754553 97.56 True local misassembly 7059317 7061035 153771 152053 CM091758.1 scf7180002754553 99.36 True indel: indel (> 5bp) 7057091 7059291 155982 153782 CM091758.1 scf7180002754553 99.77 True fake: scaffold gap size wrong estimation (extensive) 7056473 7056973 166328 165828 CM091758.1 scf7180002754553 99.8 True indel: indel (<= 5bp) 7055278 7056470 167521 166329 CM091758.1 scf7180002754553 99.41 True indel: indel (<= 5bp) 7054291 7055276 168507 167522 CM091758.1 scf7180002754553 99.19 True indel: indel (<= 5bp) 7050655 7054289 172142 168508 CM091758.1 scf7180002754553 99.53 True fake: scaffold gap size wrong estimation (local) 7050019 7050654 172814 172179 CM091758.1 scf7180002754553 99.53 True indel: indel (<= 5bp) 7049043 7050018 173791 172816 CM091758.1 scf7180002754553 99.49 True indel: stretch of mismatches 7047735 7048815 175099 174019 CM091758.1 scf7180002754553 99.44 True indel: indel (> 5bp) 7046333 7047734 176554 175153 CM091758.1 scf7180002754553 99.29 True fake: scaffold gap size wrong estimation (local) 7044093 7046332 178805 176566 CM091758.1 scf7180002754553 99.51 True indel: indel (<= 5bp) 7043405 7044092 179495 178808 CM091758.1 scf7180002754553 98.98 True indel: indel (> 5bp) 7042645 7043396 180247 179496 CM091758.1 scf7180002754553 99.87 True indel: indel (<= 5bp) 7040419 7042375 182478 180522 CM091758.1 scf7180002754553 99.59 True fake: scaffold gap size wrong estimation (local) 7039844 7040418 183077 182503 CM091758.1 scf7180002754553 99.83 True indel: indel (<= 5bp) 7038030 7039843 184892 183079 CM091758.1 scf7180002754553 99.94 True indel: indel (> 5bp) 7036966 7038021 185948 184893 CM091758.1 scf7180002754553 99.62 True indel: indel (<= 5bp) 7034916 7036964 187997 185949 CM091758.1 scf7180002754553 99.32 True indel: indel (> 5bp) 7034080 7034915 188839 188004 CM091758.1 scf7180002754553 97.01 True local misassembly 7031762 7033559 191156 189359 CM091758.1 scf7180002754553 99.72 True local misassembly 7030516 7031160 192403 191759 CM091758.1 scf7180002754553 99.22 True indel: indel (> 5bp) 7029766 7030406 193165 192525 CM091758.1 scf7180002754553 100.0 True indel: indel (<= 5bp) 7028914 7029763 194015 193166 CM091758.1 scf7180002754553 99.76 True local misassembly 7026892 7027954 196032 194970 CM091758.1 scf7180002754553 98.97 True indel: indel (<= 5bp) 7023670 7026890 199253 196033 CM091758.1 scf7180002754553 99.57 True indel: indel (<= 5bp) 7021830 7023668 201092 199254 CM091758.1 scf7180002754553 99.51 True indel: indel (> 5bp) 7020630 7021823 202286 201093 CM091758.1 scf7180002754553 99.5 True indel: indel (> 5bp) 7020085 7020606 202811 202290 CM091758.1 scf7180002754553 99.04 True indel: stretch of mismatches 7019040 7019775 203856 203121 CM091758.1 scf7180002754553 99.18 True indel: indel (> 5bp) 7018332 7019030 204555 203857 CM091758.1 scf7180002754553 99.14 True indel: indel (> 5bp) 7016996 7018314 205911 204593 CM091758.1 scf7180002754553 99.24 True indel: indel (<= 5bp) 7013886 7016995 209022 205913 CM091758.1 scf7180002754553 99.65 True indel: indel (<= 5bp) 7013131 7013885 209778 209024 CM091758.1 scf7180002754553 99.21 True local misassembly 7010866 7011853 212013 211026 CM091758.1 scf7180002754553 99.39 True indel: indel (<= 5bp) 7009774 7010612 213101 212263 CM091758.1 scf7180002754553 99.52 True indel: indel (<= 5bp) 7006840 7009383 216033 213490 CM091758.1 scf7180002754553 99.8 True indel: indel (> 5bp) 7004450 7006816 218429 216063 CM091758.1 scf7180002754553 99.41 True indel: indel (<= 5bp) 7003841 7004449 219039 218431 CM091758.1 scf7180002754553 99.51 True indel: indel (<= 5bp) 7002818 7003759 220065 219124 CM091758.1 scf7180002754553 99.47 True indel: indel (<= 5bp) 7001367 7002492 221518 220393 CM091758.1 scf7180002754553 99.73 True local misassembly 6999344 7000978 223650 222012 CM091758.1 scf7180002754553 98.84 True fake: scaffold gap size wrong estimation (local) 6930662 6998419 291683 223836 CM091758.1 scf7180002754553 99.12 True relocation, scaffold gap is present, inconsistency = -29389 6898999 6930637 352732 321097 CM091758.1 scf7180002754553 99.5 True CONTIG scf7180002754553 353123 misassembled 6115517 6225621 1 110016 CM091754.1 scf7180002754554 99.65 True local misassembly 6226225 6395986 110655 280353 CM091754.1 scf7180002754554 99.39 True relocation, scaffold gap is present, inconsistency = -40697 6395985 6475995 321049 400952 CM091754.1 scf7180002754554 99.25 True fake: scaffold gap size wrong estimation (local) 6476440 6615740 401786 540604 CM091754.1 scf7180002754554 99.15 True fake: scaffold gap size wrong estimation (extensive) 6615910 6617485 549745 551318 CM091754.1 scf7180002754554 99.75 True fake: scaffold gap size wrong estimation (local) 6617594 6620585 551418 554413 CM091754.1 scf7180002754554 99.27 True indel: indel (> 5bp) 6620687 6624665 554543 558520 CM091754.1 scf7180002754554 99.65 True fake: scaffold gap size wrong estimation (local) 6624844 6637816 562444 575430 CM091754.1 scf7180002754554 99.4 True relocation, scaffold gap is present, inconsistency = -12627 6637810 6639908 588051 590145 CM091754.1 scf7180002754554 99.02 True indel: indel (<= 5bp) 6640006 6658725 590245 608684 CM091754.1 scf7180002754554 97.22 True relocation, scaffold gap is present, inconsistency = -13463 6659193 6664087 622615 627485 CM091754.1 scf7180002754554 98.53 True fake: scaffold gap size wrong estimation (local) 6664230 6678818 629060 643651 CM091754.1 scf7180002754554 99.04 True fake: scaffold gap size wrong estimation (extensive) 6679496 6680139 652907 653550 CM091754.1 scf7180002754554 98.76 True indel: indel (<= 5bp) 6680365 6682854 653781 656270 CM091754.1 scf7180002754554 99.16 True indel: indel (> 5bp) 6682861 6684352 656271 657762 CM091754.1 scf7180002754554 99.8 True local misassembly 6685823 6688029 659228 661434 CM091754.1 scf7180002754554 100.0 True fake: scaffold gap size wrong estimation (extensive) 6698387 6700088 661898 663599 CM091754.1 scf7180002754554 99.59 True local misassembly 6700797 6703474 663986 666663 CM091754.1 scf7180002754554 99.22 True indel: indel (<= 5bp) 6703475 6704142 666666 667333 CM091754.1 scf7180002754554 99.25 True indel: indel (<= 5bp) 6704143 6706468 667335 669660 CM091754.1 scf7180002754554 99.4 True local misassembly 6707260 6710038 670465 673243 CM091754.1 scf7180002754554 99.57 True indel: indel (<= 5bp) 6710339 6712120 673546 675327 CM091754.1 scf7180002754554 99.83 True indel: indel (<= 5bp) 6712121 6713304 675329 676512 CM091754.1 scf7180002754554 99.83 True indel: indel (<= 5bp) 6713306 6715440 676513 678647 CM091754.1 scf7180002754554 99.81 True indel: indel (<= 5bp) 6715443 6716198 678648 679403 CM091754.1 scf7180002754554 99.6 True indel: indel (> 5bp) 6716407 6716980 679619 680192 CM091754.1 scf7180002754554 99.83 True indel: indel (> 5bp) 6716990 6717644 680193 680847 CM091754.1 scf7180002754554 99.24 True indel: indel (<= 5bp) 6717664 6719158 680869 682363 CM091754.1 scf7180002754554 99.73 True indel: indel (<= 5bp) 6719159 6720724 682365 683930 CM091754.1 scf7180002754554 99.55 True local misassembly 6721661 6722718 684757 685814 CM091754.1 scf7180002754554 99.05 True local misassembly 6723254 6724587 686352 687685 CM091754.1 scf7180002754554 99.63 True local misassembly 6726092 6727013 689193 690114 CM091754.1 scf7180002754554 99.24 True relocation, scaffold gap is present, inconsistency = -21534 6727387 6732471 712022 717110 CM091754.1 scf7180002754554 99.53 True fake: scaffold gap size wrong estimation (local) 6733621 6789402 722657 778161 CM091754.1 scf7180002754554 98.62 True indel: indel (> 5bp) 6789459 6862015 778255 850794 CM091754.1 scf7180002754554 99.69 True CONTIG scf7180002754554 851114 misassembled 1993141 2019427 1 26320 CM091763.1 scf7180002754555 99.56 True indel: indel (> 5bp) 2019462 2046970 26364 53866 CM091763.1 scf7180002754555 98.89 True relocation, scaffold gap is present, inconsistency = -22447 2047088 2048714 76431 78058 CM091763.1 scf7180002754555 98.89 True indel: indel (<= 5bp) 2048819 2051745 78159 81089 CM091763.1 scf7180002754555 99.52 True indel: indel (> 5bp) 2052004 2085926 81337 115239 CM091763.1 scf7180002754555 99.16 True fake: not a misassembly (possible transposable element) 99059 101129 118545 116485 CM091763.1 scf7180002754555 97.88 True fake: not a misassembly (possible transposable element) 2088942 2193792 120038 224421 CM091763.1 scf7180002754555 98.93 True CONTIG scf7180002754555 224421 misassembled 17382486 17385116 1 2649 CM091753.1 scf7180002754556 99.06 True fake: scaffold gap size wrong estimation (local) 17385229 17455075 2757 72756 CM091753.1 scf7180002754556 99.37 True relocation, scaffold gap is present, inconsistency = -34748 17455072 17456199 107501 108628 CM091753.1 scf7180002754556 95.66 True indel: indel (<= 5bp) 17456322 17461744 108749 114171 CM091753.1 scf7180002754556 99.72 True indel: indel (> 5bp) 17461997 17462600 114430 115033 CM091753.1 scf7180002754556 99.83 True indel: indel (<= 5bp) 17462601 17463770 115035 116204 CM091753.1 scf7180002754556 99.74 True indel: indel (<= 5bp) 17463771 17464298 116206 116733 CM091753.1 scf7180002754556 100.0 True indel: indel (<= 5bp) 17464299 17465848 116735 118284 CM091753.1 scf7180002754556 99.68 True indel: indel (<= 5bp) 17465849 17466757 118289 119197 CM091753.1 scf7180002754556 99.89 True indel: indel (<= 5bp) 17466864 17467452 119300 119888 CM091753.1 scf7180002754556 99.83 True fake: scaffold gap size wrong estimation (local) 17467942 17513860 120299 165754 CM091753.1 scf7180002754556 98.44 True relocation, scaffold gap is present, inconsistency = -35009 17500163 17500663 187066 187574 CM091753.1 scf7180002754556 98.39 True fake: scaffold gap size wrong estimation (local) 17513918 17527685 200850 214616 CM091753.1 scf7180002754556 99.43 True fake: scaffold gap size wrong estimation (local) 17527987 17578781 216313 267066 CM091753.1 scf7180002754556 99.4 True local misassembly 17579293 17665999 267254 353473 CM091753.1 scf7180002754556 98.92 True fake: scaffold gap size wrong estimation (local) 17666243 17685829 353665 373244 CM091753.1 scf7180002754556 99.42 True relocation, scaffold gap is present, inconsistency = -19581 17685862 17710631 392858 417653 CM091753.1 scf7180002754556 99.46 True translocation, scaffold gap is present 6159879 6173480 424364 437968 CM091764.1 scf7180002754556 99.76 True translocation, scaffold gap is present 17710672 17733536 438606 461473 CM091753.1 scf7180002754556 99.41 True translocation, scaffold gap is present 6173474 6184535 470767 481826 CM091764.1 scf7180002754556 99.81 True relocation, scaffold gap is present, inconsistency = -10281 6184544 6188946 492116 496514 CM091764.1 scf7180002754556 99.7 True translocation, scaffold gap is present 17733863 17736925 496543 499613 CM091753.1 scf7180002754556 98.96 True fake: scaffold gap size wrong estimation (local) 17736933 17740630 502546 506244 CM091753.1 scf7180002754556 99.65 True translocation, scaffold gap is present 6188959 6195941 506265 513251 CM091764.1 scf7180002754556 99.69 True translocation, scaffold gap is present 17740784 17747605 516408 523229 CM091753.1 scf7180002754556 99.69 True translocation, scaffold gap is present 6196005 6201153 525926 531063 CM091764.1 scf7180002754556 99.67 True fake: scaffold gap size wrong estimation (local) 6201196 6242916 535721 577462 CM091764.1 scf7180002754556 99.61 True fake: scaffold gap size wrong estimation (local) 6243115 6259998 581970 598868 CM091764.1 scf7180002754556 99.67 True relocation, scaffold gap is present, inconsistency = -16042 6259973 6271348 614885 626253 CM091764.1 scf7180002754556 99.57 True relocation, scaffold gap is present, inconsistency = -10914 6271349 6287592 637168 653151 CM091764.1 scf7180002754556 97.55 True indel: indel (<= 5bp) 6287623 6325130 653185 690796 CM091764.1 scf7180002754556 99.23 True relocation, scaffold gap is present, inconsistency = -18227 6325192 6329103 709085 713029 CM091764.1 scf7180002754556 99.29 True fake: scaffold gap size wrong estimation (local) 6329813 6373901 713517 757627 CM091764.1 scf7180002754556 99.43 True relocation, scaffold gap is present, inconsistency = -40492 6373960 6462230 798178 886509 CM091764.1 scf7180002754556 99.46 True indel: indel (<= 5bp) 6462334 6469668 886614 894007 CM091764.1 scf7180002754556 98.81 True indel: indel (> 5bp) 6469707 6496021 894059 920425 CM091764.1 scf7180002754556 99.49 True indel: indel (> 5bp) 6496207 6514449 920619 938846 CM091764.1 scf7180002754556 99.46 True relocation, scaffold gap is present, inconsistency = -23353 6514449 6578286 962199 1026090 CM091764.1 scf7180002754556 99.39 True indel: indel (> 5bp) 6578381 6594064 1026203 1041889 CM091764.1 scf7180002754556 99.17 True fake: scaffold gap size wrong estimation (local) 6594137 6613843 1046029 1065726 CM091764.1 scf7180002754556 99.61 True fake: scaffold gap size wrong estimation (local) 6613860 6655675 1071119 1112982 CM091764.1 scf7180002754556 99.4 True CONTIG scf7180002754556 1112982 misassembled 15557297 15609827 52255 1 CM091753.1 scf7180002754557 98.72 True fake: scaffold gap size wrong estimation (extensive) 15513889 15557286 105388 62195 CM091753.1 scf7180002754557 98.46 True fake: scaffold gap size wrong estimation (local) 15468396 15513744 157079 111623 CM091753.1 scf7180002754557 99.3 True indel: indel (> 5bp) 15441527 15468350 184007 157157 CM091753.1 scf7180002754557 99.2 True translocation, scaffold gap is present 20079285 20081634 194082 191747 CM091751.1 scf7180002754557 97.8 True fake: not a misassembly (possible transposable element) 15436210 15441442 199338 194103 CM091753.1 scf7180002754557 99.24 True fake: not a misassembly (possible transposable element) 20071686 20076475 204121 199339 CM091751.1 scf7180002754557 98.35 True relocation, scaffold gap is present, inconsistency = -9590 20076780 20078352 208616 207045 CM091751.1 scf7180002754557 99.05 True translocation, scaffold gap is present 15426749 15436023 219011 209730 CM091753.1 scf7180002754557 99.44 True fake: scaffold gap size wrong estimation (local) 15412327 15426737 240600 226006 CM091753.1 scf7180002754557 98.32 True fake: scaffold gap size wrong estimation (local) 15388262 15412230 266386 242404 CM091753.1 scf7180002754557 99.41 True fake: scaffold gap size wrong estimation (extensive) 15354920 15388641 307625 274304 CM091753.1 scf7180002754557 98.18 True relocation, scaffold gap is present, inconsistency = -33189 15325396 15354897 370386 340837 CM091753.1 scf7180002754557 99.27 True fake: scaffold gap size wrong estimation (local) 15319888 15325202 379944 374607 CM091753.1 scf7180002754557 98.9 True CONTIG scf7180002754557 379944 misassembled 11758303 11778430 1 20143 CM091759.1 scf7180002754558 99.67 True fake: scaffold gap size wrong estimation (local) 11778814 11787947 27207 36334 CM091759.1 scf7180002754558 99.75 True fake: scaffold gap size wrong estimation (extensive) 11787973 11980277 45183 237197 CM091759.1 scf7180002754558 99.49 True relocation, scaffold gap is present, inconsistency = -37124 11981144 11995529 275188 289572 CM091759.1 scf7180002754558 99.7 True fake: scaffold gap size wrong estimation (local) 11995532 12144530 291057 439859 CM091759.1 scf7180002754558 99.41 True local misassembly 12144610 12154404 440381 450178 CM091759.1 scf7180002754558 99.78 True CONTIG scf7180002754558 450178 misassembled 15558556 15602111 1 42500 CM091754.1 scf7180002754559 96.68 True fake: scaffold gap size wrong estimation (local) 15602290 15650279 42872 89876 CM091754.1 scf7180002754559 95.86 True fake: scaffold gap size wrong estimation (local) 15651332 15740814 95116 184187 CM091754.1 scf7180002754559 99.04 True indel: stretch of mismatches 15740922 15756458 184295 200004 CM091754.1 scf7180002754559 98.66 True fake: scaffold gap size wrong estimation (local) 15757984 15766495 200702 209208 CM091754.1 scf7180002754559 99.57 True indel: indel (> 5bp) 15766669 15860564 209388 302566 CM091754.1 scf7180002754559 98.73 True fake: scaffold gap size wrong estimation (local) 15861153 15862893 303110 304849 CM091754.1 scf7180002754559 98.91 True fake: scaffold gap size wrong estimation (local) 15864244 15978067 305542 419506 CM091754.1 scf7180002754559 99.7 True indel: indel (> 5bp) 15978225 15988937 419653 430390 CM091754.1 scf7180002754559 98.82 True indel: indel (> 5bp) 15989039 16028631 430443 469150 CM091754.1 scf7180002754559 97.11 True fake: scaffold gap size wrong estimation (local) 16029254 16033106 469434 473286 CM091754.1 scf7180002754559 99.66 True translocation, scaffold gap is present 3975342 3983147 481109 473307 CM091751.1 scf7180002754559 99.39 True fake: not a misassembly (possible transposable element) 16033097 16036647 481130 484676 CM091754.1 scf7180002754559 99.49 True fake: not a misassembly (possible transposable element) 3973214 3973785 486209 485638 CM091751.1 scf7180002754559 100.0 True local misassembly 3971638 3972419 487786 487005 CM091751.1 scf7180002754559 99.87 True translocation, scaffold gap is present 16036623 16044391 494181 501951 CM091754.1 scf7180002754559 99.64 True translocation, scaffold gap is present 3970542 3971317 502780 502005 CM091751.1 scf7180002754559 99.87 True indel: indel (<= 5bp) 3969943 3970540 503378 502781 CM091751.1 scf7180002754559 99.33 True indel: indel (<= 5bp) 3968660 3969753 504663 503570 CM091751.1 scf7180002754559 99.36 True local misassembly 3966671 3968063 506660 505268 CM091751.1 scf7180002754559 99.35 True indel: indel (<= 5bp) 3965975 3966570 507357 506762 CM091751.1 scf7180002754559 100.0 True indel: indel (<= 5bp) 3965382 3965974 507951 507359 CM091751.1 scf7180002754559 99.83 True indel: indel (<= 5bp) 3964087 3965381 509247 507953 CM091751.1 scf7180002754559 99.85 True fake: not a misassembly (possible transposable element) 16044375 16047462 509268 512357 CM091754.1 scf7180002754559 99.51 True fake: not a misassembly (possible transposable element) 3961654 3964086 514816 512384 CM091751.1 scf7180002754559 99.79 True translocation, scaffold gap is present 16057374 16060015 515273 517916 CM091754.1 scf7180002754559 99.58 True local misassembly 16060568 16061590 517917 518939 CM091754.1 scf7180002754559 97.75 True local misassembly 16062209 16063615 519562 520968 CM091754.1 scf7180002754559 99.93 True indel: indel (<= 5bp) 16063617 16068906 520969 526258 CM091754.1 scf7180002754559 99.91 True indel: indel (<= 5bp) 16068907 16071917 526261 529271 CM091754.1 scf7180002754559 99.7 True indel: indel (<= 5bp) 16072046 16073372 529395 530721 CM091754.1 scf7180002754559 97.51 True indel: indel (> 5bp) 16073530 16074639 530851 531960 CM091754.1 scf7180002754559 99.46 True indel: indel (> 5bp) 16074742 16075770 532048 533076 CM091754.1 scf7180002754559 99.9 True indel: indel (<= 5bp) 16075786 16078294 533094 535602 CM091754.1 scf7180002754559 99.72 True relocation, scaffold gap is present, inconsistency = -10211 16079017 16080105 546536 547624 CM091754.1 scf7180002754559 99.72 True fake: scaffold gap size wrong estimation (local) 16080446 16081594 547960 549108 CM091754.1 scf7180002754559 99.13 True indel: indel (<= 5bp) 16081947 16082969 549465 550487 CM091754.1 scf7180002754559 99.8 True indel: indel (> 5bp) 16082973 16083962 550498 551487 CM091754.1 scf7180002754559 99.9 True indel: indel (<= 5bp) 16084300 16086198 551828 553726 CM091754.1 scf7180002754559 99.84 True indel: indel (<= 5bp) 16086234 16089858 553764 557388 CM091754.1 scf7180002754559 99.78 True indel: indel (<= 5bp) 16089860 16091992 557389 559521 CM091754.1 scf7180002754559 99.72 True indel: indel (<= 5bp) 16091998 16093406 559522 560930 CM091754.1 scf7180002754559 98.51 True indel: indel (<= 5bp) 16093446 16094932 560975 562461 CM091754.1 scf7180002754559 99.8 True fake: scaffold gap size wrong estimation (local) 16094933 16095977 562490 563534 CM091754.1 scf7180002754559 99.9 True indel: indel (> 5bp) 16096079 16097708 563621 565250 CM091754.1 scf7180002754559 99.45 True fake: scaffold gap size wrong estimation (local) 16097709 16098454 565268 566013 CM091754.1 scf7180002754559 99.2 True indel: indel (<= 5bp) 16098524 16100126 566085 567687 CM091754.1 scf7180002754559 99.63 True indel: indel (<= 5bp) 16100127 16100665 567689 568227 CM091754.1 scf7180002754559 99.44 True indel: indel (<= 5bp) 16100688 16105707 568245 573264 CM091754.1 scf7180002754559 99.12 True fake: scaffold gap size wrong estimation (local) 16106793 16107933 574307 575447 CM091754.1 scf7180002754559 99.65 True fake: scaffold gap size wrong estimation (local) 16107934 16108706 575461 576233 CM091754.1 scf7180002754559 98.32 True indel: indel (<= 5bp) 16108708 16109696 576234 577222 CM091754.1 scf7180002754559 99.8 True indel: indel (<= 5bp) 16109697 16111477 577225 579005 CM091754.1 scf7180002754559 99.89 True fake: scaffold gap size wrong estimation (local) 16111571 16143311 579093 610769 CM091754.1 scf7180002754559 98.84 True local misassembly 16143800 16155170 611059 622407 CM091754.1 scf7180002754559 98.71 True indel: indel (<= 5bp) 16155254 16203883 622487 671109 CM091754.1 scf7180002754559 99.31 True fake: scaffold gap size wrong estimation (local) 16203988 16247271 671204 714474 CM091754.1 scf7180002754559 99.28 True fake: scaffold gap size wrong estimation (local) 16247292 16264388 714574 731672 CM091754.1 scf7180002754559 99.41 True fake: scaffold gap size wrong estimation (local) 16264544 16287648 731817 754955 CM091754.1 scf7180002754559 99.35 True fake: scaffold gap size wrong estimation (local) 16287784 16316420 755078 783703 CM091754.1 scf7180002754559 99.35 True fake: scaffold gap size wrong estimation (local) 16316527 16386354 783820 852765 CM091754.1 scf7180002754559 97.99 True fake: scaffold gap size wrong estimation (local) 16389624 16538219 856086 1004237 CM091754.1 scf7180002754559 99.13 True fake: scaffold gap size wrong estimation (local) 16538374 16551796 1004347 1017736 CM091754.1 scf7180002754559 99.35 True fake: scaffold gap size wrong estimation (local) 16552912 16637632 1018392 1102976 CM091754.1 scf7180002754559 99.38 True local misassembly 16638095 16726240 1104533 1192665 CM091754.1 scf7180002754559 99.09 True fake: scaffold gap size wrong estimation (local) 16729256 16933921 1193852 1396526 CM091754.1 scf7180002754559 98.42 True fake: scaffold gap size wrong estimation (local) 16934025 16935452 1396624 1398072 CM091754.1 scf7180002754559 97.87 True fake: scaffold gap size wrong estimation (local) 16935572 16969925 1398185 1432377 CM091754.1 scf7180002754559 98.92 True indel: indel (<= 5bp) 16970006 16981464 1432454 1443909 CM091754.1 scf7180002754559 99.84 True indel: indel (<= 5bp) 16981527 16997035 1443973 1459485 CM091754.1 scf7180002754559 99.9 True CONTIG scf7180002754559 1459555 misassembled 17747608 17758162 1 10565 CM091753.1 scf7180002754560 99.25 True fake: scaffold gap size wrong estimation (local) 17758738 17761119 13656 16037 CM091753.1 scf7180002754560 99.83 True local misassembly 17763774 17765214 16284 17724 CM091753.1 scf7180002754560 99.65 True indel: indel (<= 5bp) 17765216 17766132 17725 18641 CM091753.1 scf7180002754560 100.0 True indel: stretch of mismatches 17766347 17766950 18856 19459 CM091753.1 scf7180002754560 99.83 True indel: indel (> 5bp) 17766960 17767920 19483 20443 CM091753.1 scf7180002754560 99.79 True indel: indel (<= 5bp) 17767921 17769386 20445 21910 CM091753.1 scf7180002754560 99.93 True indel: indel (> 5bp) 17769766 17770639 22299 23172 CM091753.1 scf7180002754560 99.89 True indel: indel (<= 5bp) 17770640 17773937 23175 26472 CM091753.1 scf7180002754560 99.91 True indel: indel (<= 5bp) 17773939 17774520 26473 27054 CM091753.1 scf7180002754560 99.66 True local misassembly 17774618 17775163 27055 27600 CM091753.1 scf7180002754560 99.63 True local misassembly 17776097 17777746 28542 30191 CM091753.1 scf7180002754560 99.64 True indel: indel (<= 5bp) 17778073 17779261 30516 31704 CM091753.1 scf7180002754560 99.75 True indel: indel (<= 5bp) 17779265 17779813 31705 32253 CM091753.1 scf7180002754560 99.82 True indel: indel (<= 5bp) 17779814 17781576 32255 34017 CM091753.1 scf7180002754560 99.55 True relocation, scaffold gap is present, inconsistency = -18856 17782548 17833732 53845 104887 CM091753.1 scf7180002754560 99.05 True fake: scaffold gap size wrong estimation (local) 17833719 17977116 108036 246558 CM091753.1 scf7180002754560 95.99 True fake: scaffold gap size wrong estimation (local) 17977144 18046537 248975 318794 CM091753.1 scf7180002754560 97.9 True fake: scaffold gap size wrong estimation (local) 18047165 18059054 319488 331363 CM091753.1 scf7180002754560 99.25 True fake: scaffold gap size wrong estimation (local) 18059342 18070813 335937 347409 CM091753.1 scf7180002754560 99.21 True relocation, scaffold gap is present, inconsistency = -11342 18070819 18174752 358757 462857 CM091753.1 scf7180002754560 99.4 True relocation, scaffold gap is present, inconsistency = -40732 18174774 18188360 503611 517176 CM091753.1 scf7180002754560 99.55 True fake: scaffold gap size wrong estimation (local) 18188442 18202412 523234 537209 CM091753.1 scf7180002754560 99.84 True relocation, scaffold gap is present, inconsistency = -13522 18202876 18218012 551195 566324 CM091753.1 scf7180002754560 99.91 True relocation, scaffold gap is present, inconsistency = -12763 18218022 18237307 579097 598383 CM091753.1 scf7180002754560 99.88 True fake: scaffold gap size wrong estimation (local) 18237826 18253435 601639 617245 CM091753.1 scf7180002754560 99.73 True relocation, scaffold gap is present, inconsistency = -15414 18253873 18255784 633097 635008 CM091753.1 scf7180002754560 99.9 True indel: indel (> 5bp) 18255791 18256545 635009 635763 CM091753.1 scf7180002754560 99.74 True fake: scaffold gap size wrong estimation (local) 18258152 18258733 637347 637928 CM091753.1 scf7180002754560 99.83 True fake: scaffold gap size wrong estimation (local) 18259591 18260261 638656 639326 CM091753.1 scf7180002754560 99.85 True local misassembly 18260669 18261230 639327 639888 CM091753.1 scf7180002754560 96.26 True fake: scaffold gap size wrong estimation (local) 18261736 18265782 640926 644972 CM091753.1 scf7180002754560 99.58 True fake: scaffold gap size wrong estimation (local) 18266179 18266820 645197 645838 CM091753.1 scf7180002754560 99.84 True local misassembly 18267443 18268158 646203 646918 CM091753.1 scf7180002754560 97.21 True indel: indel (> 5bp) 18268523 18269577 647224 648278 CM091753.1 scf7180002754560 99.81 True fake: scaffold gap size wrong estimation (local) 18270562 18273001 648416 650855 CM091753.1 scf7180002754560 99.06 True fake: scaffold gap size wrong estimation (local) 18273048 18303128 652709 682821 CM091753.1 scf7180002754560 99.38 True relocation, scaffold gap is present, inconsistency = -10762 18303139 18332027 693594 722565 CM091753.1 scf7180002754560 99.27 True relocation, scaffold gap is present, inconsistency = -12146 18332021 18347449 734705 750155 CM091753.1 scf7180002754560 99.17 True indel: indel (> 5bp) 18347458 18364170 750174 766940 CM091753.1 scf7180002754560 99.52 True relocation, scaffold gap is present, inconsistency = -10953 18364346 18367605 778069 781336 CM091753.1 scf7180002754560 99.72 True indel: indel (> 5bp) 18367641 18405459 781382 819131 CM091753.1 scf7180002754560 99.2 True relocation, scaffold gap is present, inconsistency = -30253 18406187 18430819 850112 875141 CM091753.1 scf7180002754560 98.91 True fake: scaffold gap size wrong estimation (extensive) 18430814 18439918 883839 892993 CM091753.1 scf7180002754560 99.32 True fake: scaffold gap size wrong estimation (local) 18440239 18462022 896737 918517 CM091753.1 scf7180002754560 99.75 True relocation, scaffold gap is present, inconsistency = -21597 18462033 18480277 940125 958367 CM091753.1 scf7180002754560 99.77 True fake: scaffold gap size wrong estimation (local) 18481058 18501859 963422 983972 CM091753.1 scf7180002754560 98.72 True fake: scaffold gap size wrong estimation (extensive) 18501957 18508082 992582 998674 CM091753.1 scf7180002754560 98.95 True local misassembly 18514696 18516712 998675 1000691 CM091753.1 scf7180002754560 99.9 True CONTIG scf7180002754560 1000691 misassembled 12439245 12541550 101857 27 CM091753.1 scf7180002754561 98.8 True indel: indel (> 5bp) 12406129 12439186 134986 101910 CM091753.1 scf7180002754561 99.37 True relocation, scaffold gap is present, inconsistency = 21939 12330684 12384169 188547 135007 CM091753.1 scf7180002754561 99.22 True relocation, scaffold gap is present, inconsistency = -75524 12384895 12406131 209853 188624 CM091753.1 scf7180002754561 99.54 True relocation, scaffold gap is present, inconsistency = 53974 12213397 12330634 327355 210140 CM091753.1 scf7180002754561 99.32 True fake: scaffold gap size wrong estimation (local) 12133286 12213273 406791 327463 CM091753.1 scf7180002754561 98.2 True fake: scaffold gap size wrong estimation (local) 12125681 12133083 414366 406945 CM091753.1 scf7180002754561 99.58 True fake: scaffold gap size wrong estimation (local) 12084343 12125145 455408 414518 CM091753.1 scf7180002754561 99.33 True fake: scaffold gap size wrong estimation (local) 12059765 12084225 480042 455492 CM091753.1 scf7180002754561 99.27 True fake: scaffold gap size wrong estimation (local) 11967650 12059674 571709 480115 CM091753.1 scf7180002754561 98.54 True fake: scaffold gap size wrong estimation (local) 11953885 11967568 585490 571740 CM091753.1 scf7180002754561 99.18 True fake: scaffold gap size wrong estimation (local) 11896581 11953722 642254 585626 CM091753.1 scf7180002754561 98.38 True fake: scaffold gap size wrong estimation (local) 11821669 11895682 715240 642351 CM091753.1 scf7180002754561 97.47 True fake: scaffold gap size wrong estimation (local) 11788906 11819129 747606 717771 CM091753.1 scf7180002754561 97.99 True fake: scaffold gap size wrong estimation (local) 11746580 11788837 788377 747707 CM091753.1 scf7180002754561 95.54 True translocation, scaffold gap is present 14155821 14156764 789800 788857 CM091760.1 scf7180002754561 99.58 True local misassembly 14152239 14155701 793486 790024 CM091760.1 scf7180002754561 99.08 True local misassembly 14150528 14151620 794596 793504 CM091760.1 scf7180002754561 99.45 True indel: stretch of mismatches 14149588 14150393 795536 794731 CM091760.1 scf7180002754561 99.5 True indel: indel (<= 5bp) 14148182 14149587 796943 795538 CM091760.1 scf7180002754561 99.79 True fake: scaffold gap size wrong estimation (local) 14145758 14147289 799035 797504 CM091760.1 scf7180002754561 99.48 True indel: indel (<= 5bp) 14144450 14145757 800346 799039 CM091760.1 scf7180002754561 99.24 True indel: indel (<= 5bp) 14142946 14144447 801848 800347 CM091760.1 scf7180002754561 99.33 True indel: indel (<= 5bp) 14142377 14142899 802419 801897 CM091760.1 scf7180002754561 100.0 True local misassembly 14140097 14141860 804183 802420 CM091760.1 scf7180002754561 99.09 True local misassembly 14138306 14139122 805983 805167 CM091760.1 scf7180002754561 99.76 True indel: indel (<= 5bp) 14137384 14137942 806907 806349 CM091760.1 scf7180002754561 99.64 True local misassembly 14135643 14136369 807634 806908 CM091760.1 scf7180002754561 99.17 True indel: indel (<= 5bp) 14135046 14135642 808232 807636 CM091760.1 scf7180002754561 99.33 True fake: scaffold gap size wrong estimation (local) 14133711 14134744 809696 808663 CM091760.1 scf7180002754561 99.42 True indel: indel (> 5bp) 14133093 14133710 810346 809729 CM091760.1 scf7180002754561 100.0 True indel: indel (<= 5bp) 14132393 14133091 811045 810347 CM091760.1 scf7180002754561 100.0 True indel: indel (<= 5bp) 14131874 14132392 811565 811047 CM091760.1 scf7180002754561 99.61 True indel: indel (> 5bp) 14131012 14131873 812433 811572 CM091760.1 scf7180002754561 99.77 True indel: indel (> 5bp) 14129904 14130565 813555 812894 CM091760.1 scf7180002754561 99.24 True indel: indel (<= 5bp) 14128421 14129760 815041 813702 CM091760.1 scf7180002754561 99.93 True local misassembly 14125093 14127510 818382 815965 CM091760.1 scf7180002754561 99.75 True indel: indel (<= 5bp) 14123340 14125087 820130 818383 CM091760.1 scf7180002754561 99.77 True indel: indel (<= 5bp) 14122089 14122992 821384 820481 CM091760.1 scf7180002754561 99.56 True local misassembly 14120450 14121141 823048 822357 CM091760.1 scf7180002754561 99.71 True local misassembly 14117506 14119197 826025 824334 CM091760.1 scf7180002754561 99.53 True fake: scaffold gap size wrong estimation (local) 14106363 14117566 837678 826479 CM091760.1 scf7180002754561 99.16 True indel: indel (> 5bp) 14069724 14106321 874327 837727 CM091760.1 scf7180002754561 99.36 True translocation, scaffold gap is present 9454083 9460879 874348 881141 CM091757.1 scf7180002754561 99.6 True indel: indel (> 5bp) 9460920 9492072 881197 912412 CM091757.1 scf7180002754561 99.47 True translocation, scaffold gap is present 14042587 14069715 938618 912433 CM091760.1 scf7180002754561 95.6 True translocation, scaffold gap is present 9492127 9505480 938639 952011 CM091757.1 scf7180002754561 99.45 True fake: not a misassembly (possible transposable element) 14039345 14042404 955073 952013 CM091760.1 scf7180002754561 99.35 True fake: not a misassembly (possible transposable element) 9505408 9523522 955163 973266 CM091757.1 scf7180002754561 99.48 True translocation, scaffold gap is present 14036907 14039145 975525 973287 CM091760.1 scf7180002754561 99.2 True local misassembly 14025645 14036414 987153 976371 CM091760.1 scf7180002754561 99.57 True indel: stretch of mismatches 13976764 14025609 1035982 987189 CM091760.1 scf7180002754561 99.05 True translocation, scaffold gap is present 9523959 9548283 1036003 1060330 CM091757.1 scf7180002754561 99.72 True translocation, scaffold gap is present 13931911 13976872 1125049 1080968 CM091760.1 scf7180002754561 97.0 True relocation, inconsistency = 7490 13921588 13924233 1125050 1127699 CM091760.1 scf7180002754561 98.61 True translocation 10991741 11005014 1141233 1127700 CM091753.1 scf7180002754561 97.2 True indel: indel (<= 5bp) 10949425 10991692 1182946 1141281 CM091753.1 scf7180002754561 97.43 True fake: scaffold gap size wrong estimation (local) 10948310 10949108 1183951 1183153 CM091753.1 scf7180002754561 99.5 True indel: indel (<= 5bp) 10947377 10948309 1184886 1183954 CM091753.1 scf7180002754561 99.57 True local misassembly 10944392 10946253 1187875 1186014 CM091753.1 scf7180002754561 99.89 True indel: indel (<= 5bp) 10943435 10944391 1188833 1187877 CM091753.1 scf7180002754561 97.49 True fake: scaffold gap size wrong estimation (local) 10942642 10943434 1194917 1194125 CM091753.1 scf7180002754561 96.97 True indel: indel (> 5bp) 10941049 10942411 1196504 1195142 CM091753.1 scf7180002754561 99.12 True local misassembly 10937969 10939988 1199585 1197566 CM091753.1 scf7180002754561 100.0 True indel: indel (<= 5bp) 10936822 10937501 1200731 1200052 CM091753.1 scf7180002754561 100.0 True indel: indel (<= 5bp) 10934044 10936820 1203508 1200732 CM091753.1 scf7180002754561 99.64 True indel: indel (<= 5bp) 10932861 10934043 1204694 1203512 CM091753.1 scf7180002754561 99.83 True indel: stretch of mismatches 10931556 10932681 1205999 1204874 CM091753.1 scf7180002754561 99.73 True indel: indel (<= 5bp) 10930321 10931554 1207233 1206000 CM091753.1 scf7180002754561 99.76 True local misassembly 10928237 10929586 1209315 1207966 CM091753.1 scf7180002754561 99.78 True indel: indel (<= 5bp) 10927600 10928236 1209953 1209317 CM091753.1 scf7180002754561 99.22 True indel: indel (<= 5bp) 10925992 10927598 1211560 1209954 CM091753.1 scf7180002754561 99.88 True indel: indel (<= 5bp) 10925065 10925988 1212484 1211561 CM091753.1 scf7180002754561 99.89 True indel: indel (<= 5bp) 10921184 10925064 1216366 1212486 CM091753.1 scf7180002754561 99.56 True indel: indel (<= 5bp) 10919144 10921182 1218405 1216367 CM091753.1 scf7180002754561 99.9 True indel: indel (<= 5bp) 10915187 10919143 1222363 1218407 CM091753.1 scf7180002754561 99.8 True indel: indel (<= 5bp) 10914149 10915186 1223402 1222365 CM091753.1 scf7180002754561 100.0 True local misassembly 10911266 10913585 1226286 1223967 CM091753.1 scf7180002754561 99.74 True translocation, scaffold gap is present 3869396 3872914 1229828 1226307 CM091761.1 scf7180002754561 99.15 True translocation, scaffold gap is present 10583231 10911238 1585420 1258029 CM091753.1 scf7180002754561 99.16 True local misassembly 10560450 10581984 1606947 1585421 CM091753.1 scf7180002754561 99.19 True fake: scaffold gap size wrong estimation (local) 10550672 10559772 1616671 1607586 CM091753.1 scf7180002754561 99.47 True indel: indel (> 5bp) 10542828 10550317 1624550 1617045 CM091753.1 scf7180002754561 99.52 True fake: scaffold gap size wrong estimation (local) 10529808 10542804 1641831 1628841 CM091753.1 scf7180002754561 99.64 True relocation, scaffold gap is present, inconsistency = 22404 10435680 10496737 1713565 1652498 CM091753.1 scf7180002754561 99.56 True relocation, scaffold gap is present, inconsistency = -94170 10496940 10529819 1746489 1713596 CM091753.1 scf7180002754561 99.48 True relocation, scaffold gap is present, inconsistency = 61257 10400446 10435662 1781723 1746510 CM091753.1 scf7180002754561 99.72 True relocation, scaffold gap is present, inconsistency = -34796 10162881 10400453 2050861 1816512 CM091753.1 scf7180002754561 98.04 True indel: indel (> 5bp) 10118773 10162807 2094863 2050945 CM091753.1 scf7180002754561 99.3 True fake: scaffold gap size wrong estimation (local) 10115386 10118307 2098221 2095321 CM091753.1 scf7180002754561 98.9 True fake: scaffold gap size wrong estimation (local) 10062475 10115279 2150165 2098308 CM091753.1 scf7180002754561 97.59 True fake: scaffold gap size wrong estimation (local) 10037557 10061634 2174720 2150630 CM091753.1 scf7180002754561 99.58 True fake: scaffold gap size wrong estimation (local) 9692896 10037211 2519225 2175005 CM091753.1 scf7180002754561 99.32 True translocation 20031027 20033465 2521666 2519226 CM091751.1 scf7180002754561 99.18 True fake: scaffold gap size wrong estimation (local) 20026897 20030245 2525397 2522049 CM091751.1 scf7180002754561 99.11 True indel: indel (> 5bp) 20013652 20026783 2538604 2525503 CM091751.1 scf7180002754561 98.87 True local misassembly 20010761 20011729 2541508 2540540 CM091751.1 scf7180002754561 100.0 True indel: indel (<= 5bp) 20009314 20010456 2542953 2541811 CM091751.1 scf7180002754561 99.56 True indel: indel (> 5bp) 20008143 20009217 2544118 2543044 CM091751.1 scf7180002754561 99.44 True indel: indel (<= 5bp) 20007372 20008141 2544888 2544119 CM091751.1 scf7180002754561 99.87 True indel: indel (<= 5bp) 20006771 20007371 2545490 2544890 CM091751.1 scf7180002754561 99.83 True indel: indel (<= 5bp) 20006228 20006770 2546035 2545493 CM091751.1 scf7180002754561 99.82 True indel: indel (<= 5bp) 20005445 20005974 2546819 2546290 CM091751.1 scf7180002754561 99.62 True fake: scaffold gap size wrong estimation (local) 20001894 20003378 2549696 2548212 CM091751.1 scf7180002754561 99.87 True indel: indel (<= 5bp) 20000256 20001821 2551332 2549767 CM091751.1 scf7180002754561 99.55 True local misassembly 19997580 19998270 2554055 2553365 CM091751.1 scf7180002754561 99.71 True indel: stretch of mismatches 19996795 19997565 2554840 2554070 CM091751.1 scf7180002754561 99.61 True local misassembly 19995292 19995969 2556356 2555679 CM091751.1 scf7180002754561 99.26 True fake: scaffold gap size wrong estimation (local) 19993391 19994703 2558096 2556784 CM091751.1 scf7180002754561 99.31 True local misassembly 19991480 19992681 2559963 2558762 CM091751.1 scf7180002754561 99.25 True indel: indel (<= 5bp) 19990083 19991084 2561357 2560356 CM091751.1 scf7180002754561 99.7 True indel: indel (> 5bp) 19988957 19989665 2562556 2561848 CM091751.1 scf7180002754561 99.58 True indel: indel (> 5bp) 19987548 19988523 2563971 2562996 CM091751.1 scf7180002754561 98.77 True indel: indel (<= 5bp) 19986311 19987547 2565209 2563973 CM091751.1 scf7180002754561 99.43 True indel: indel (> 5bp) 19984777 19985975 2566733 2565535 CM091751.1 scf7180002754561 99.08 True indel: indel (> 5bp) 19983850 19984776 2567666 2566740 CM091751.1 scf7180002754561 99.24 True indel: indel (<= 5bp) 19983347 19983846 2568166 2567667 CM091751.1 scf7180002754561 99.0 True indel: indel (<= 5bp) 19982295 19982893 2569216 2568618 CM091751.1 scf7180002754561 99.83 True indel: indel (> 5bp) 19980129 19982164 2571376 2569341 CM091751.1 scf7180002754561 98.72 True local misassembly 19977067 19977622 2573691 2573136 CM091751.1 scf7180002754561 99.46 True local misassembly 19971998 19973851 2578776 2576923 CM091751.1 scf7180002754561 99.08 True indel: indel (> 5bp) 19969681 19971997 2581101 2578785 CM091751.1 scf7180002754561 99.22 True indel: indel (> 5bp) 19959184 19969337 2591619 2581459 CM091751.1 scf7180002754561 98.04 True local misassembly 19953651 19958990 2597006 2591668 CM091751.1 scf7180002754561 99.59 True CONTIG scf7180002754561 2597012 misassembled 16022391 16026446 4216 107 CM091757.1 scf7180002754562 99.56 True CONTIG scf7180002754562 4216 correct 3107072 3203836 96046 116 CM091759.1 scf7180002754563 99.05 True relocation, scaffold gap is present, inconsistency = -19824 3092834 3107059 130173 115883 CM091759.1 scf7180002754563 99.53 True fake: scaffold gap size wrong estimation (local) 3000789 3092715 222592 130692 CM091759.1 scf7180002754563 99.84 True relocation, scaffold gap is present, inconsistency = -76066 2981670 3000777 317778 298670 CM091759.1 scf7180002754563 99.98 True fake: scaffold gap size wrong estimation (local) 2968860 2981131 332657 320386 CM091759.1 scf7180002754563 99.98 True fake: scaffold gap size wrong estimation (local) 2964233 2968582 338654 334306 CM091759.1 scf7180002754563 99.63 True CONTIG scf7180002754563 345370 misassembled 12620126 12625601 5230 1 CM091759.1 scf7180002754564 95.12 True fake: scaffold gap size wrong estimation (local) 12619030 12619887 8170 7314 CM091759.1 scf7180002754564 98.37 True local misassembly 12614513 12615867 14002 12644 CM091759.1 scf7180002754564 98.88 True fake: scaffold gap size wrong estimation (local) 12609969 12613813 18594 14742 CM091759.1 scf7180002754564 98.22 True fake: scaffold gap size wrong estimation (local) 12607271 12608650 20941 19561 CM091759.1 scf7180002754564 98.27 True fake: scaffold gap size wrong estimation (local) 12603930 12605793 25919 24079 CM091759.1 scf7180002754564 96.95 True local misassembly 12588630 12598622 40581 30569 CM091759.1 scf7180002754564 98.01 True translocation, scaffold gap is present 15398961 15432047 40624 73718 CM091758.1 scf7180002754564 99.82 True translocation, scaffold gap is present 12587312 12588668 75596 74240 CM091759.1 scf7180002754564 99.48 True fake: scaffold gap size wrong estimation (local) 12585338 12586194 78050 77194 CM091759.1 scf7180002754564 99.88 True indel: indel (> 5bp) 12584817 12585331 78565 78051 CM091759.1 scf7180002754564 98.83 True local misassembly 12581938 12583964 81441 79415 CM091759.1 scf7180002754564 99.01 True indel: indel (<= 5bp) 12579880 12581937 83500 81443 CM091759.1 scf7180002754564 98.69 True indel: indel (<= 5bp) 12577409 12579879 85972 83502 CM091759.1 scf7180002754564 98.87 True fake: scaffold gap size wrong estimation (local) 12576811 12577358 91587 91040 CM091759.1 scf7180002754564 99.27 True local misassembly 12575693 12576298 92702 92097 CM091759.1 scf7180002754564 98.84 True indel: indel (<= 5bp) 12574887 12575692 93509 92704 CM091759.1 scf7180002754564 99.75 True indel: indel (<= 5bp) 12574247 12574885 94148 93510 CM091759.1 scf7180002754564 99.53 True fake: scaffold gap size wrong estimation (local) 12571857 12573319 95920 94458 CM091759.1 scf7180002754564 99.66 True fake: scaffold gap size wrong estimation (local) 12563829 12571505 105483 97814 CM091759.1 scf7180002754564 99.32 True translocation, scaffold gap is present 15431152 15431685 114556 115089 CM091758.1 scf7180002754564 98.69 True CONTIG scf7180002754564 115984 misassembled 4992307 4998670 6164 1 CM091768.1 scf7180002754565 96.83 True CONTIG scf7180002754565 7708 correct 13911045 13928668 17884 241 CM091756.1 scf7180002754566 99.65 True indel: indel (> 5bp) 13870867 13910699 58131 18187 CM091756.1 scf7180002754566 99.18 True relocation, scaffold gap is present, inconsistency = -42635 13869301 13870571 102332 101062 CM091756.1 scf7180002754566 99.92 True indel: indel (<= 5bp) 13866472 13869300 105163 102335 CM091756.1 scf7180002754566 99.65 True indel: indel (<= 5bp) 13864924 13866243 106710 105391 CM091756.1 scf7180002754566 99.62 True fake: scaffold gap size wrong estimation (local) 13863497 13864046 107891 107342 CM091756.1 scf7180002754566 99.82 True indel: indel (> 5bp) 13862664 13863484 108712 107892 CM091756.1 scf7180002754566 100.0 True indel: indel (<= 5bp) 13858736 13862661 112638 108713 CM091756.1 scf7180002754566 99.82 True indel: indel (> 5bp) 13855744 13858712 115607 112639 CM091756.1 scf7180002754566 99.16 True local misassembly 13854519 13855288 116453 115684 CM091756.1 scf7180002754566 98.96 True indel: indel (<= 5bp) 13852217 13854039 118759 116937 CM091756.1 scf7180002754566 99.56 True relocation, scaffold gap is present, inconsistency = -10155 13800152 13852047 180973 129084 CM091756.1 scf7180002754566 99.45 True relocation, scaffold gap is present, inconsistency = -13214 13780220 13799558 214139 194781 CM091756.1 scf7180002754566 99.64 True fake: scaffold gap size wrong estimation (local) 13778161 13779355 217576 216301 CM091756.1 scf7180002754566 97.83 True fake: scaffold gap size wrong estimation (local) 13742253 13777754 253425 217982 CM091756.1 scf7180002754566 99.41 True CONTIG scf7180002754566 253425 misassembled 5846310 5854587 1 8285 CM091757.1 scf7180002754567 99.41 True fake: scaffold gap size wrong estimation (local) 5855048 5866930 9081 20968 CM091757.1 scf7180002754567 99.72 True fake: scaffold gap size wrong estimation (extensive) 5866925 5888919 28059 50035 CM091757.1 scf7180002754567 99.51 True fake: scaffold gap size wrong estimation (local) 5888726 5926679 55633 93110 CM091757.1 scf7180002754567 98.38 True CONTIG scf7180002754567 130382 correct 2969491 2980835 1 11390 CM091754.1 scf7180002754568 98.46 True fake: scaffold gap size wrong estimation (local) 2982532 2983256 12137 12861 CM091754.1 scf7180002754568 99.17 True local misassembly 2984611 2985318 14211 14918 CM091754.1 scf7180002754568 99.15 True indel: indel (<= 5bp) 2985321 2986593 14919 16191 CM091754.1 scf7180002754568 99.45 True indel: indel (> 5bp) 2986950 2988598 16537 18185 CM091754.1 scf7180002754568 99.27 True local misassembly 2989890 2991363 18322 19795 CM091754.1 scf7180002754568 98.64 True local misassembly 2992081 2993305 20273 21497 CM091754.1 scf7180002754568 99.18 True fake: scaffold gap size wrong estimation (local) 2993866 2994518 21799 22451 CM091754.1 scf7180002754568 99.69 True indel: indel (<= 5bp) 2994520 2995042 22452 22974 CM091754.1 scf7180002754568 100.0 True indel: indel (<= 5bp) 2995043 2996152 22976 24085 CM091754.1 scf7180002754568 99.73 True indel: indel (<= 5bp) 2996153 2997068 24087 25002 CM091754.1 scf7180002754568 99.45 True indel: indel (<= 5bp) 2997069 2999123 25004 27058 CM091754.1 scf7180002754568 99.56 True fake: scaffold gap size wrong estimation (local) 2999642 3000729 33219 34308 CM091754.1 scf7180002754568 99.27 True fake: scaffold gap size wrong estimation (local) 3002233 3002932 35845 36544 CM091754.1 scf7180002754568 100.0 True local misassembly 3004848 3006083 37302 38537 CM091754.1 scf7180002754568 99.27 True indel: indel (> 5bp) 3006264 3007491 38707 39934 CM091754.1 scf7180002754568 98.78 True fake: scaffold gap size wrong estimation (local) 3010736 3012194 41822 43280 CM091754.1 scf7180002754568 99.52 True indel: indel (<= 5bp) 3012200 3012972 43281 44053 CM091754.1 scf7180002754568 99.09 True indel: indel (<= 5bp) 3012974 3013545 44054 44625 CM091754.1 scf7180002754568 99.65 True local misassembly 3014148 3016380 44626 46858 CM091754.1 scf7180002754568 99.33 True indel: indel (<= 5bp) 3016552 3017212 47031 47691 CM091754.1 scf7180002754568 99.7 True indel: indel (<= 5bp) 3017214 3018592 47692 49070 CM091754.1 scf7180002754568 99.06 True fake: scaffold gap size wrong estimation (local) 3019029 3019712 49547 50230 CM091754.1 scf7180002754568 99.56 True CONTIG scf7180002754568 51057 correct 4644159 4654801 18 10475 CM091754.1 scf7180002754569 98.2 True CONTIG scf7180002754569 10475 correct 4427678 4430557 2889 1 CM091768.1 scf7180002754570 99.57 True fake: scaffold gap size wrong estimation (local) 4425249 4427560 5318 3007 CM091768.1 scf7180002754570 99.13 True local misassembly 4420164 4423362 8517 5319 CM091768.1 scf7180002754570 99.94 True fake: scaffold gap size wrong estimation (local) 4418532 4419938 13885 12476 CM091768.1 scf7180002754570 100.0 True CONTIG scf7180002754570 13885 correct 11999704 12020482 20355 1 CM091760.1 scf7180002754571 97.4 True CONTIG scf7180002754571 25442 correct 9317761 9319313 1553 1 CM091767.1 scf7180002754572 100.0 True fake: not a misassembly (possible transposable element) 8398494 8401194 4274 1574 CM091767.1 scf7180002754572 99.96 True fake: not a misassembly (possible transposable element) 9313312 9315292 6275 4295 CM091767.1 scf7180002754572 99.85 True relocation, scaffold gap is present, inconsistency = 912990 8396376 8398715 10209 7882 CM091767.1 scf7180002754572 97.3 True fake: scaffold gap size wrong estimation (local) 8392968 8395783 13045 10230 CM091767.1 scf7180002754572 100.0 True translocation, scaffold gap is present 16285151 16286349 14402 13202 CM091752.1 scf7180002754572 98.92 True CONTIG scf7180002754572 15289 misassembled 14265683 14267219 1994 458 CM091758.1 scf7180002754573 99.42 True relocation, scaffold gap is present, inconsistency = 26196 14238932 14239466 2549 2015 CM091758.1 scf7180002754573 98.88 True indel: indel (<= 5bp) 14237453 14238927 4024 2550 CM091758.1 scf7180002754573 99.8 True indel: indel (> 5bp) 14236443 14237446 5028 4025 CM091758.1 scf7180002754573 99.43 True local misassembly 14231267 14234473 8182 5029 CM091758.1 scf7180002754573 98.22 True translocation, scaffold gap is present 57222 58431 8352 9561 CM091755.1 scf7180002754573 100.0 True translocation, scaffold gap is present 14260560 14264312 13744 9902 CM091758.1 scf7180002754573 97.17 True fake: scaffold gap size wrong estimation (local) 14259694 14260470 14587 13835 CM091758.1 scf7180002754573 95.51 True relocation, scaffold gap is present, inconsistency = 27826 14222772 14231198 23683 15257 CM091758.1 scf7180002754573 99.13 True fake: scaffold gap size wrong estimation (local) 14220357 14222473 26060 23939 CM091758.1 scf7180002754573 99.48 True fake: scaffold gap size wrong estimation (local) 14217911 14220128 30703 28486 CM091758.1 scf7180002754573 99.91 True local misassembly 14215632 14216987 32788 31433 CM091758.1 scf7180002754573 99.78 True indel: indel (<= 5bp) 14214926 14215501 33492 32917 CM091758.1 scf7180002754573 99.31 True fake: scaffold gap size wrong estimation (local) 14200151 14214597 48290 33821 CM091758.1 scf7180002754573 99.27 True fake: scaffold gap size wrong estimation (local) 14190255 14199589 57685 48711 CM091758.1 scf7180002754573 95.57 True fake: scaffold gap size wrong estimation (local) 14175971 14190010 71538 57950 CM091758.1 scf7180002754573 95.25 True relocation, scaffold gap is present, inconsistency = -10406 14184721 14185557 73187 72358 CM091758.1 scf7180002754573 96.2 True fake: scaffold gap size wrong estimation (local) 14168057 14176239 89407 81218 CM091758.1 scf7180002754573 98.81 True local misassembly 14160968 14167498 95965 89408 CM091758.1 scf7180002754573 98.51 True fake: scaffold gap size wrong estimation (local) 14151647 14161049 109154 99710 CM091758.1 scf7180002754573 98.26 True fake: scaffold gap size wrong estimation (local) 14138209 14151081 122280 109713 CM091758.1 scf7180002754573 95.81 True CONTIG scf7180002754573 122547 misassembled 4403068 4403853 786 1 CM091768.1 scf7180002754574 98.54 True relocation, inconsistency = -76118 4477651 4479185 2321 787 CM091768.1 scf7180002754574 99.87 True fake: scaffold gap size wrong estimation (local) 4475536 4476733 4116 2919 CM091768.1 scf7180002754574 98.33 True local misassembly 4474162 4474917 4872 4117 CM091768.1 scf7180002754574 100.0 True fake: scaffold gap size wrong estimation (local) 4471661 4474148 8162 5674 CM091768.1 scf7180002754574 99.96 True fake: scaffold gap size wrong estimation (local) 4470315 4471759 10050 8606 CM091768.1 scf7180002754574 100.0 True CONTIG scf7180002754574 10050 misassembled 147508 149616 1 2109 CM091764.1 scf7180002754575 100.0 True local misassembly 150685 158293 2528 10136 CM091764.1 scf7180002754575 99.71 True CONTIG scf7180002754575 13234 correct CONTIG scf7180002754576 164885 unaligned 8105313 8111412 4 5966 CM091767.1 scf7180002754577 97.7 True fake: scaffold gap size wrong estimation (local) 8113349 8115734 6344 8740 CM091767.1 scf7180002754577 98.92 True fake: scaffold gap size wrong estimation (local) 8116144 8122970 9539 16350 CM091767.1 scf7180002754577 99.74 True fake: scaffold gap size wrong estimation (local) 8123205 8126607 16390 19792 CM091767.1 scf7180002754577 99.97 True fake: scaffold gap size wrong estimation (local) 8127904 8129621 23900 25619 CM091767.1 scf7180002754577 99.88 True fake: scaffold gap size wrong estimation (local) 8130032 8134214 26060 30251 CM091767.1 scf7180002754577 99.86 True fake: scaffold gap size wrong estimation (local) 8134907 8138589 30523 34205 CM091767.1 scf7180002754577 99.97 True CONTIG scf7180002754577 35948 correct 11393114 11396904 1 3791 CM091765.1 scf7180002754578 100.0 True local misassembly 11398023 11399358 4114 5449 CM091765.1 scf7180002754578 98.43 True CONTIG scf7180002754578 6235 correct 4905293 4905943 653 1 CM091768.1 scf7180002754579 99.69 True fake: scaffold gap size wrong estimation (local) 4901656 4905204 4292 744 CM091768.1 scf7180002754579 99.44 True local misassembly 4897508 4901143 7928 4293 CM091768.1 scf7180002754579 100.0 True fake: scaffold gap size wrong estimation (local) 4888929 4897540 19997 11394 CM091768.1 scf7180002754579 99.86 True CONTIG scf7180002754579 19997 correct CONTIG scf7180002754580 88113 unaligned 30129 33230 1 3102 CM091761.1 scf7180002754581 99.52 True fake: scaffold gap size wrong estimation (local) 33359 34620 3205 4466 CM091761.1 scf7180002754581 99.92 True fake: scaffold gap size wrong estimation (local) 34899 36397 4693 6190 CM091761.1 scf7180002754581 99.73 True CONTIG scf7180002754581 7395 correct 169773 173265 3765 258 CM091760.1 scf7180002754582 99.97 True translocation, scaffold gap is present 4007624 4024404 3786 20378 CM091754.1 scf7180002754582 98.88 True translocation, scaffold gap is present 153442 169751 36707 20399 CM091760.1 scf7180002754582 99.85 True translocation, scaffold gap is present 4024612 4027508 52440 55403 CM091754.1 scf7180002754582 98.49 True translocation 15802749 15807143 59816 55404 CM091757.1 scf7180002754582 98.91 True CONTIG scf7180002754582 59971 misassembled 628527 630898 2375 1 CM091755.1 scf7180002754583 99.96 True fake: not a misassembly (possible transposable element) 8297532 8302611 2376 7454 CM091767.1 scf7180002754583 99.74 True fake: not a misassembly (possible transposable element) 624796 627561 10240 7475 CM091755.1 scf7180002754583 100.0 True fake: not a misassembly (possible transposable element) 77176 79846 12985 10316 CM091763.1 scf7180002754583 99.66 True fake: not a misassembly (possible transposable element) 623902 624834 15833 14860 CM091755.1 scf7180002754583 95.82 True CONTIG scf7180002754583 16177 correct 18907755 18913094 5335 1 CM091751.1 scf7180002754584 99.01 True fake: scaffold gap size wrong estimation (local) 18893581 18907145 20460 6875 CM091751.1 scf7180002754584 99.38 True fake: scaffold gap size wrong estimation (extensive) 18873405 18893691 50135 29971 CM091751.1 scf7180002754584 98.29 True CONTIG scf7180002754584 50135 correct 10399090 10407447 378 8662 CM091765.1 scf7180002754585 97.33 True translocation, scaffold gap is present 7814162 7820466 10109 16414 CM091767.1 scf7180002754585 99.92 True fake: not a misassembly (possible transposable element) 10409317 10415197 18511 24387 CM091765.1 scf7180002754585 99.88 True fake: not a misassembly (possible transposable element) 7822664 7824534 24408 26277 CM091767.1 scf7180002754585 99.89 True fake: scaffold gap size wrong estimation (local) 7826207 7828995 28808 31620 CM091767.1 scf7180002754585 99.82 True fake: scaffold gap size wrong estimation (local) 7830342 7834026 31944 35622 CM091767.1 scf7180002754585 99.48 True fake: scaffold gap size wrong estimation (local) 7834120 7839440 35713 41045 CM091767.1 scf7180002754585 99.7 True fake: scaffold gap size wrong estimation (local) 7839649 7845222 41203 46777 CM091767.1 scf7180002754585 99.87 True CONTIG scf7180002754585 49156 misassembled 2348235 2350318 2107 1 CM091764.1 scf7180002754586 99.57 True fake: scaffold gap size wrong estimation (local) 2346573 2348107 3769 2235 CM091764.1 scf7180002754586 98.37 True local misassembly 2341539 2345847 8561 4253 CM091764.1 scf7180002754586 99.86 True indel: indel (<= 5bp) 2340253 2341537 9846 8562 CM091764.1 scf7180002754586 100.0 True indel: indel (<= 5bp) 2339436 2340251 10662 9847 CM091764.1 scf7180002754586 100.0 True fake: scaffold gap size wrong estimation (local) 2328957 2338701 21810 12046 CM091764.1 scf7180002754586 99.31 True CONTIG scf7180002754586 22082 correct 15016683 15023182 6565 1 CM091751.1 scf7180002754587 99.41 True fake: scaffold gap size wrong estimation (local) 15015427 15016789 8441 7079 CM091751.1 scf7180002754587 99.49 True fake: scaffold gap size wrong estimation (local) 15008644 15015307 15044 8561 CM091751.1 scf7180002754587 96.72 True fake: scaffold gap size wrong estimation (local) 15003903 15008485 19790 15196 CM091751.1 scf7180002754587 99.42 True fake: scaffold gap size wrong estimation (local) 15001429 15002932 21862 20357 CM091751.1 scf7180002754587 98.85 True CONTIG scf7180002754587 21862 correct 11363228 11373624 10092 1 CM091765.1 scf7180002754588 96.85 True fake: scaffold gap size wrong estimation (local) 11362407 11363287 13003 12123 CM091765.1 scf7180002754588 100.0 True CONTIG scf7180002754588 13003 correct 1919467 1942114 1 21917 CM091756.1 scf7180002754589 96.19 True fake: scaffold gap size wrong estimation (local) 1942078 2004317 26398 88236 CM091756.1 scf7180002754589 98.65 True relocation, scaffold gap is present, inconsistency = -34807 2004315 2090664 123041 207739 CM091756.1 scf7180002754589 97.46 True fake: scaffold gap size wrong estimation (local) 2091612 2138415 207938 254822 CM091756.1 scf7180002754589 99.43 True fake: scaffold gap size wrong estimation (local) 2139982 2148376 256108 264271 CM091756.1 scf7180002754589 96.62 True CONTIG scf7180002754589 266772 misassembled 5686004 5689751 3826 1 CM091767.1 scf7180002754590 98.6 True fake: scaffold gap size wrong estimation (local) 5683231 5685029 7380 5582 CM091767.1 scf7180002754590 99.61 True fake: scaffold gap size wrong estimation (local) 5680860 5682872 9772 7760 CM091767.1 scf7180002754590 98.91 True fake: scaffold gap size wrong estimation (local) 5679085 5680859 11567 9793 CM091767.1 scf7180002754590 99.55 True fake: scaffold gap size wrong estimation (local) 5677866 5678451 12370 11785 CM091767.1 scf7180002754590 97.95 True indel: indel (> 5bp) 5674746 5677865 15500 12381 CM091767.1 scf7180002754590 99.13 True fake: scaffold gap size wrong estimation (local) 5670208 5674744 21251 16717 CM091767.1 scf7180002754590 98.98 True fake: scaffold gap size wrong estimation (local) 5668792 5669492 22510 21810 CM091767.1 scf7180002754590 99.57 True local misassembly 5667768 5668539 23431 22660 CM091767.1 scf7180002754590 99.48 True indel: indel (> 5bp) 5666469 5667286 24739 23922 CM091767.1 scf7180002754590 97.31 True local misassembly 5664857 5666257 26140 24740 CM091767.1 scf7180002754590 99.5 True fake: scaffold gap size wrong estimation (local) 5637158 5662602 52572 27929 CM091767.1 scf7180002754590 95.26 True fake: scaffold gap size wrong estimation (local) 5627782 5637163 65197 55782 CM091767.1 scf7180002754590 99.08 True fake: scaffold gap size wrong estimation (local) 5625347 5627677 67688 65318 CM091767.1 scf7180002754590 98.68 True CONTIG scf7180002754590 67688 correct 4606319 4617976 11736 273 CM091768.1 scf7180002754591 98.31 True CONTIG scf7180002754591 15274 correct 3117694 3122136 4444 1 CM091752.1 scf7180002754592 99.91 True fake: not a misassembly (possible transposable element) 4697418 4698259 4651 5492 CM091754.1 scf7180002754592 97.59 True fake: not a misassembly (possible transposable element) 3111716 3117783 11558 5493 CM091752.1 scf7180002754592 99.87 True fake: scaffold gap size wrong estimation (local) 3107294 3111702 22760 18361 CM091752.1 scf7180002754592 99.61 True fake: scaffold gap size wrong estimation (local) 3103201 3106349 26432 23275 CM091752.1 scf7180002754592 98.47 True relocation, inconsistency = 230110 2871436 2872199 28087 27324 CM091752.1 scf7180002754592 98.3 True CONTIG scf7180002754592 28470 misassembled 927214 933785 1 6585 CM091764.1 scf7180002754593 99.85 True CONTIG scf7180002754593 6585 correct 1771938 1773328 1 1382 CM091768.1 scf7180002754594 99.0 True fake: scaffold gap size wrong estimation (local) 1774190 1774706 2244 2760 CM091768.1 scf7180002754594 98.65 True indel: indel (> 5bp) 1775141 1776438 3201 4498 CM091768.1 scf7180002754594 99.31 True fake: scaffold gap size wrong estimation (local) 1778073 1792387 5834 20273 CM091768.1 scf7180002754594 98.11 True fake: scaffold gap size wrong estimation (local) 1793133 1794383 21058 22308 CM091768.1 scf7180002754594 99.36 True indel: indel (<= 5bp) 1794384 1795147 22310 23073 CM091768.1 scf7180002754594 99.61 True CONTIG scf7180002754594 23345 correct 9142640 9146584 3960 1 CM091767.1 scf7180002754595 98.13 True fake: not a misassembly (possible transposable element) 11494688 11495876 3981 5169 CM091765.1 scf7180002754595 98.82 True fake: not a misassembly (possible transposable element) 9140914 9141619 6037 5332 CM091767.1 scf7180002754595 99.86 True fake: scaffold gap size wrong estimation (local) 9139648 9141428 8700 6906 CM091767.1 scf7180002754595 96.27 True CONTIG scf7180002754595 8700 correct CONTIG scf7180002754596 68152 unaligned 1071233 1083092 1 11858 CM091764.1 scf7180002754597 99.62 True fake: scaffold gap size wrong estimation (local) 1083234 1091919 11923 20608 CM091764.1 scf7180002754597 99.77 True fake: scaffold gap size wrong estimation (extensive) 1091861 1094224 29286 31649 CM091764.1 scf7180002754597 99.83 True CONTIG scf7180002754597 31649 correct 16847808 16856132 8361 220 CM091756.1 scf7180002754598 97.69 True CONTIG scf7180002754598 13137 correct 5129636 5143086 1 13125 CM091766.1 scf7180002754599 97.16 True CONTIG scf7180002754599 20445 correct 6814878 6822194 7314 1 CM091767.1 scf7180002754600 99.67 True fake: not a misassembly (possible transposable element) 6642872 6644742 11682 9813 CM091767.1 scf7180002754600 97.82 True fake: not a misassembly (possible transposable element) 6812901 6814177 12990 11712 CM091767.1 scf7180002754600 99.45 True fake: not a misassembly (possible transposable element) 6640468 6642505 15045 13011 CM091767.1 scf7180002754600 99.41 True fake: not a misassembly (possible transposable element) 6809301 6812810 18600 15069 CM091767.1 scf7180002754600 98.95 True relocation, scaffold gap is present, inconsistency = 168005 6637726 6639172 22170 20724 CM091767.1 scf7180002754600 98.41 True local misassembly 6636672 6637725 23366 22313 CM091767.1 scf7180002754600 99.91 True fake: scaffold gap size wrong estimation (local) 6612724 6636420 49702 26397 CM091767.1 scf7180002754600 97.77 True fake: scaffold gap size wrong estimation (local) 6609661 6611599 59431 57493 CM091767.1 scf7180002754600 99.59 True fake: scaffold gap size wrong estimation (local) 6609194 6609713 61768 61249 CM091767.1 scf7180002754600 99.23 True local misassembly 6606713 6608669 64246 62290 CM091767.1 scf7180002754600 99.34 True local misassembly 6605317 6606023 65005 64299 CM091767.1 scf7180002754600 98.87 True indel: indel (<= 5bp) 6604719 6605314 65601 65006 CM091767.1 scf7180002754600 99.83 True indel: indel (<= 5bp) 6603223 6604621 67099 65701 CM091767.1 scf7180002754600 98.93 True indel: indel (<= 5bp) 6602550 6603222 67773 67101 CM091767.1 scf7180002754600 99.55 True fake: scaffold gap size wrong estimation (local) 6593326 6600307 77718 70655 CM091767.1 scf7180002754600 97.4 True local misassembly 6579192 6592469 91305 78002 CM091767.1 scf7180002754600 98.68 True fake: scaffold gap size wrong estimation (local) 6574784 6578494 98027 94310 CM091767.1 scf7180002754600 99.02 True CONTIG scf7180002754600 98076 misassembled 8872956 8876362 3410 1 CM091767.1 scf7180002754601 99.44 True fake: not a misassembly (possible transposable element) 9889535 9893413 7309 3431 CM091765.1 scf7180002754601 100.0 True fake: not a misassembly (possible transposable element) 8872043 8872662 9482 8863 CM091767.1 scf7180002754601 100.0 True translocation, scaffold gap is present 15534934 15535716 11497 12279 CM091757.1 scf7180002754601 97.45 True indel: indel (> 5bp) 15536198 15537576 12708 14086 CM091757.1 scf7180002754601 99.2 True translocation, scaffold gap is present 8863470 8863979 16185 15676 CM091767.1 scf7180002754601 100.0 True translocation, scaffold gap is present 9887278 9887858 17143 16563 CM091765.1 scf7180002754601 100.0 True translocation, scaffold gap is present 15537588 15538240 17308 17959 CM091757.1 scf7180002754601 99.85 True translocation, scaffold gap is present 8861269 8863461 20171 17980 CM091767.1 scf7180002754601 98.68 True translocation, scaffold gap is present 9884682 9887222 23043 20464 CM091765.1 scf7180002754601 99.22 True local misassembly 9888614 9889258 24514 23870 CM091765.1 scf7180002754601 100.0 True fake: scaffold gap size wrong estimation (local) 9883723 9884620 25938 25041 CM091765.1 scf7180002754601 100.0 True fake: scaffold gap size wrong estimation (local) 9878653 9883397 31448 26692 CM091765.1 scf7180002754601 99.96 True CONTIG scf7180002754601 31448 misassembled 11166705 11265370 98665 1 CM091758.1 scf7180002754602 99.6 True indel: indel (<= 5bp) 11158657 11166675 106486 98698 CM091758.1 scf7180002754602 96.75 True fake: scaffold gap size wrong estimation (local) 11144147 11158748 123676 109106 CM091758.1 scf7180002754602 99.34 True fake: scaffold gap size wrong estimation (extensive) 11132497 11142318 142688 133357 CM091758.1 scf7180002754602 95.26 True indel: indel (> 5bp) 11097378 11132490 177776 142689 CM091758.1 scf7180002754602 99.33 True relocation, scaffold gap is present, inconsistency = -43559 11091897 11097446 226657 221267 CM091758.1 scf7180002754602 96.74 True CONTIG scf7180002754602 226657 misassembled 12156981 12169076 1 11786 CM091759.1 scf7180002754603 96.25 True fake: scaffold gap size wrong estimation (local) 12169225 12169970 11916 12661 CM091759.1 scf7180002754603 99.33 True fake: scaffold gap size wrong estimation (local) 12169971 12171325 12689 14043 CM091759.1 scf7180002754603 97.93 True local misassembly 12171607 12172246 14044 14683 CM091759.1 scf7180002754603 95.94 True fake: scaffold gap size wrong estimation (local) 12172972 12173539 16172 16755 CM091759.1 scf7180002754603 99.82 True fake: scaffold gap size wrong estimation (local) 12173841 12177630 16934 20714 CM091759.1 scf7180002754603 99.13 True fake: scaffold gap size wrong estimation (local) 12177924 12189375 20818 32281 CM091759.1 scf7180002754603 99.41 True CONTIG scf7180002754603 32281 correct 13478034 13478931 1 942 CM091758.1 scf7180002754604 96.85 True CONTIG scf7180002754604 942 correct 11466931 11469646 1 2716 CM091765.1 scf7180002754605 99.89 True fake: scaffold gap size wrong estimation (local) 11471657 11472693 5205 6241 CM091765.1 scf7180002754605 99.9 True translocation, scaffold gap is present 16320052 16322779 6643 9412 CM091757.1 scf7180002754605 98.84 True CONTIG scf7180002754605 9412 misassembled 9209939 9218982 368 9349 CM091763.1 scf7180002754606 97.23 True CONTIG scf7180002754606 10910 correct 12853252 12883783 30557 1 CM091758.1 scf7180002754607 99.66 True relocation, scaffold gap is present, inconsistency = -12652 12816001 12853247 80472 43214 CM091758.1 scf7180002754607 99.93 True fake: scaffold gap size wrong estimation (local) 12804268 12815423 92217 81061 CM091758.1 scf7180002754607 99.91 True CONTIG scf7180002754607 92217 misassembled 1681020 1691898 1 10864 CM091753.1 scf7180002754608 99.73 True fake: scaffold gap size wrong estimation (local) 1691949 1697522 16213 21786 CM091753.1 scf7180002754608 99.93 True fake: scaffold gap size wrong estimation (local) 1697871 1721281 23379 46248 CM091753.1 scf7180002754608 97.2 True indel: indel (> 5bp) 1721380 1738156 46379 63198 CM091753.1 scf7180002754608 99.27 True CONTIG scf7180002754608 63331 correct 18848320 18849568 1331 70 CM091751.1 scf7180002754609 98.34 True fake: scaffold gap size wrong estimation (local) 18846594 18848111 3060 1542 CM091751.1 scf7180002754609 98.49 True fake: scaffold gap size wrong estimation (local) 18845209 18846378 4439 3278 CM091751.1 scf7180002754609 97.78 True fake: scaffold gap size wrong estimation (local) 18842259 18843057 7314 6516 CM091751.1 scf7180002754609 98.87 True indel: indel (<= 5bp) 18840272 18842257 9300 7315 CM091751.1 scf7180002754609 99.7 True indel: indel (<= 5bp) 18839728 18840269 9842 9301 CM091751.1 scf7180002754609 100.0 True indel: indel (> 5bp) 18838588 18839431 10973 10130 CM091751.1 scf7180002754609 99.41 True fake: not a misassembly (possible transposable element) 18527098 18527631 12524 11990 CM091751.1 scf7180002754609 97.94 True fake: not a misassembly (possible transposable element) 18834797 18835327 13401 12836 CM091751.1 scf7180002754609 96.34 True fake: scaffold gap size wrong estimation (local) 18832644 18834639 15549 13558 CM091751.1 scf7180002754609 98.55 True fake: scaffold gap size wrong estimation (local) 18828510 18831280 19360 16591 CM091751.1 scf7180002754609 99.17 True fake: scaffold gap size wrong estimation (local) 18811403 18828073 36602 19952 CM091751.1 scf7180002754609 98.49 True CONTIG scf7180002754609 36602 correct 18922129 18922983 8 871 CM091751.1 scf7180002754610 98.15 True local misassembly 18923252 18924917 1049 2714 CM091751.1 scf7180002754610 99.28 True fake: not a misassembly (possible transposable element) 4576560 4579096 2735 5272 CM091768.1 scf7180002754610 99.96 True fake: not a misassembly (possible transposable element) 18925397 18926798 5880 7283 CM091751.1 scf7180002754610 99.15 True fake: scaffold gap size wrong estimation (local) 18927009 18931161 8478 12632 CM091751.1 scf7180002754610 98.84 True CONTIG scf7180002754610 12632 correct 2081160 2085304 4145 1 CM091764.1 scf7180002754611 99.26 True fake: not a misassembly (possible transposable element) 8384365 8389770 4146 9550 CM091767.1 scf7180002754611 99.56 True fake: not a misassembly (possible transposable element) 2071833 2079571 17604 9571 CM091764.1 scf7180002754611 97.13 True CONTIG scf7180002754611 17604 correct 5077000 5083339 6271 1 CM091754.1 scf7180002754612 98.89 True fake: scaffold gap size wrong estimation (local) 5074560 5077094 12230 9696 CM091754.1 scf7180002754612 100.0 True fake: scaffold gap size wrong estimation (local) 5072324 5074559 14524 12289 CM091754.1 scf7180002754612 99.11 True local misassembly 5070903 5071989 15611 14525 CM091754.1 scf7180002754612 100.0 True fake: scaffold gap size wrong estimation (local) 5056182 5071025 31163 16185 CM091754.1 scf7180002754612 99.14 True relocation, scaffold gap is present, inconsistency = -12223 5036139 5056154 63483 43414 CM091754.1 scf7180002754612 99.93 True CONTIG scf7180002754612 63483 misassembled 9354292 9360890 1 6583 CM091767.1 scf7180002754613 99.65 True fake: scaffold gap size wrong estimation (local) 9360902 9361542 7884 8525 CM091767.1 scf7180002754613 99.84 True fake: scaffold gap size wrong estimation (local) 9361632 9367240 8613 14221 CM091767.1 scf7180002754613 99.95 True CONTIG scf7180002754613 14286 correct 5584575 5585820 71 1316 CM091767.1 scf7180002754614 99.76 True indel: indel (<= 5bp) 5585821 5586918 1322 2419 CM091767.1 scf7180002754614 97.91 True local misassembly 5587268 5588259 2420 3411 CM091767.1 scf7180002754614 97.88 True indel: indel (> 5bp) 5588260 5588951 3421 4112 CM091767.1 scf7180002754614 98.41 True fake: scaffold gap size wrong estimation (local) 5588952 5589748 4544 5340 CM091767.1 scf7180002754614 98.87 True indel: indel (<= 5bp) 5589749 5591306 5343 6900 CM091767.1 scf7180002754614 99.1 True fake: scaffold gap size wrong estimation (local) 5595219 5607533 14581 27077 CM091767.1 scf7180002754614 96.84 True local misassembly 5608424 5610647 27904 30127 CM091767.1 scf7180002754614 98.56 True local misassembly 5612044 5612841 30897 31694 CM091767.1 scf7180002754614 97.37 True local misassembly 5613970 5616087 32132 34249 CM091767.1 scf7180002754614 99.43 True indel: indel (> 5bp) 5616111 5617109 34257 35255 CM091767.1 scf7180002754614 100.0 True fake: scaffold gap size wrong estimation (local) 5618134 5619732 35984 37582 CM091767.1 scf7180002754614 99.12 True CONTIG scf7180002754614 37591 correct 1226142 1242575 16451 1 CM091764.1 scf7180002754615 99.82 True fake: scaffold gap size wrong estimation (local) 1215892 1225748 27057 17197 CM091764.1 scf7180002754615 99.89 True indel: indel (> 5bp) 1211183 1215571 31844 27455 CM091764.1 scf7180002754615 99.95 True fake: scaffold gap size wrong estimation (local) 1187404 1211042 55628 31985 CM091764.1 scf7180002754615 99.85 True fake: scaffold gap size wrong estimation (extensive) 1184409 1187226 67508 64691 CM091764.1 scf7180002754615 99.93 True fake: scaffold gap size wrong estimation (local) 1176998 1184525 77571 70044 CM091764.1 scf7180002754615 99.93 True fake: scaffold gap size wrong estimation (local) 1167397 1177031 91252 81641 CM091764.1 scf7180002754615 99.61 True indel: indel (<= 5bp) 1157420 1167369 101232 91277 CM091764.1 scf7180002754615 99.85 True fake: scaffold gap size wrong estimation (local) 1096386 1155370 164580 106911 CM091764.1 scf7180002754615 97.59 True local misassembly 1094103 1095018 165493 164581 CM091764.1 scf7180002754615 99.16 True CONTIG scf7180002754615 165493 correct 7157896 7190059 17 32211 CM091765.1 scf7180002754616 99.75 True fake: scaffold gap size wrong estimation (extensive) 7190264 7236774 41073 86204 CM091765.1 scf7180002754616 96.05 True fake: scaffold gap size wrong estimation (local) 7236944 7243560 86667 93300 CM091765.1 scf7180002754616 99.15 True fake: scaffold gap size wrong estimation (local) 7245781 7247317 94975 96511 CM091765.1 scf7180002754616 99.41 True CONTIG scf7180002754616 96525 correct CONTIG scf7180002754617 355 unaligned 8648919 8651471 2557 4 CM091767.1 scf7180002754618 99.92 True fake: scaffold gap size wrong estimation (local) 8644528 8646592 7472 5374 CM091767.1 scf7180002754618 98.8 True translocation 1653490 1657133 11160 7538 CM091764.1 scf7180002754618 97.83 True fake: scaffold gap size wrong estimation (local) 1650563 1653351 14064 11276 CM091764.1 scf7180002754618 99.96 True CONTIG scf7180002754618 14064 misassembled 2929857 2931647 1791 1 CM091768.1 scf7180002754619 98.21 True local misassembly 2927871 2928398 2976 2449 CM091768.1 scf7180002754619 99.24 True local misassembly 2926153 2927154 4692 3691 CM091768.1 scf7180002754619 98.9 True fake: scaffold gap size wrong estimation (local) 2924916 2925420 5968 5464 CM091768.1 scf7180002754619 96.44 True local misassembly 2922231 2923945 8700 6986 CM091768.1 scf7180002754619 98.6 True indel: indel (> 5bp) 2920672 2921820 10235 9087 CM091768.1 scf7180002754619 99.22 True CONTIG scf7180002754619 10235 correct 20726234 20728229 1995 1 CM091751.1 scf7180002754620 99.97 True translocation 2127064 2133672 8604 1996 CM091754.1 scf7180002754620 99.98 True translocation, scaffold gap is present 16096610 16105831 19792 10570 CM091758.1 scf7180002754620 99.92 True translocation, scaffold gap is present 2120562 2127147 28477 21892 CM091754.1 scf7180002754620 99.98 True fake: scaffold gap size wrong estimation (local) 2101379 2120675 53850 34559 CM091754.1 scf7180002754620 99.87 True fake: scaffold gap size wrong estimation (extensive) 2093802 2101207 69195 61788 CM091754.1 scf7180002754620 99.81 True CONTIG scf7180002754620 69195 misassembled 1066008 1067751 1744 1 CM091754.1 scf7180002754621 99.54 True fake: scaffold gap size wrong estimation (local) 1064742 1065244 2766 2264 CM091754.1 scf7180002754621 99.2 True indel: indel (<= 5bp) 1063189 1064741 4320 2768 CM091754.1 scf7180002754621 99.87 True fake: scaffold gap size wrong estimation (local) 1055138 1062835 12997 5316 CM091754.1 scf7180002754621 98.86 True fake: scaffold gap size wrong estimation (local) 1046571 1055176 23009 14308 CM091754.1 scf7180002754621 98.56 True fake: scaffold gap size wrong estimation (local) 1023979 1046369 45070 23214 CM091754.1 scf7180002754621 97.28 True relocation, scaffold gap is present, inconsistency = -15707 1022482 1023965 62274 60791 CM091754.1 scf7180002754621 99.33 True indel: indel (> 5bp) 1021813 1022474 62936 62275 CM091754.1 scf7180002754621 99.24 True local misassembly 1019322 1020431 64950 63841 CM091754.1 scf7180002754621 99.73 True indel: indel (<= 5bp) 1018542 1019320 65729 64951 CM091754.1 scf7180002754621 99.36 True local misassembly 1015934 1016537 67153 66550 CM091754.1 scf7180002754621 100.0 True local misassembly 1014779 1015306 68310 67783 CM091754.1 scf7180002754621 99.81 True local misassembly 1013496 1014005 69594 69085 CM091754.1 scf7180002754621 99.61 True local misassembly 1010128 1012331 72965 70762 CM091754.1 scf7180002754621 99.73 True fake: scaffold gap size wrong estimation (local) 1001880 1009351 81107 73752 CM091754.1 scf7180002754621 96.94 True CONTIG scf7180002754621 82676 misassembled 4957915 4968952 11039 1 CM091767.1 scf7180002754622 99.79 True fake: scaffold gap size wrong estimation (local) 4944882 4957535 27122 14467 CM091767.1 scf7180002754622 99.9 True fake: scaffold gap size wrong estimation (local) 4881452 4944616 95223 32054 CM091767.1 scf7180002754622 99.83 True relocation, scaffold gap is present, inconsistency = -36388 4774596 4881542 238516 131521 CM091767.1 scf7180002754622 99.75 True CONTIG scf7180002754622 238516 misassembled 2088129 2089082 1 954 CM091764.1 scf7180002754623 100.0 True indel: indel (<= 5bp) 2089084 2092814 955 4685 CM091764.1 scf7180002754623 99.95 True local misassembly 2093232 2093825 4686 5279 CM091764.1 scf7180002754623 96.63 True fake: scaffold gap size wrong estimation (local) 2094708 2096601 6699 8592 CM091764.1 scf7180002754623 100.0 True fake: scaffold gap size wrong estimation (local) 2097465 2098836 9374 10745 CM091764.1 scf7180002754623 99.56 True CONTIG scf7180002754623 10777 correct 8325849 8326646 798 1 CM091767.1 scf7180002754624 100.0 True indel: indel (<= 5bp) 8325158 8325848 1490 800 CM091767.1 scf7180002754624 97.11 True local misassembly 8324318 8324825 1998 1491 CM091767.1 scf7180002754624 100.0 True indel: indel (<= 5bp) 8320547 8324316 5768 1999 CM091767.1 scf7180002754624 99.97 True fake: scaffold gap size wrong estimation (local) 8310335 8319902 20021 10450 CM091767.1 scf7180002754624 99.9 True relocation, scaffold gap is present, inconsistency = 49671 8373956 8375484 24404 25932 CM091767.1 scf7180002754624 99.93 True fake: scaffold gap size wrong estimation (local) 8376541 8379119 26653 29199 CM091767.1 scf7180002754624 98.57 True relocation, scaffold gap is present, inconsistency = 66328 8306273 8310192 33139 29220 CM091767.1 scf7180002754624 99.95 True relocation, scaffold gap is present, inconsistency = -504331 8802765 8806735 41018 37008 CM091767.1 scf7180002754624 98.9 True CONTIG scf7180002754624 41018 misassembled 13931119 13960022 55 28834 CM091756.1 scf7180002754625 99.39 True relocation, scaffold gap is present, inconsistency = -25461 13950573 13951269 44846 45546 CM091756.1 scf7180002754625 100.0 True fake: scaffold gap size wrong estimation (local) 13959945 14025595 54265 119936 CM091756.1 scf7180002754625 99.78 True relocation, scaffold gap is present, inconsistency = -56750 14001503 14002467 152594 153558 CM091756.1 scf7180002754625 100.0 True fake: scaffold gap size wrong estimation (local) 14025615 14042007 176714 193080 CM091756.1 scf7180002754625 99.36 True fake: scaffold gap size wrong estimation (local) 14042770 14050477 193369 201104 CM091756.1 scf7180002754625 99.15 True fake: scaffold gap size wrong estimation (local) 14050472 14117731 204236 271479 CM091756.1 scf7180002754625 99.47 True relocation, scaffold gap is present, inconsistency = -56433 14117973 14142764 328154 352955 CM091756.1 scf7180002754625 99.63 True fake: scaffold gap size wrong estimation (local) 14142609 14145664 359618 362673 CM091756.1 scf7180002754625 99.51 True fake: scaffold gap size wrong estimation (local) 14146819 14160945 363341 377467 CM091756.1 scf7180002754625 99.28 True fake: scaffold gap size wrong estimation (local) 14160629 14209512 380171 428597 CM091756.1 scf7180002754625 97.58 True indel: indel (> 5bp) 14209674 14212764 428788 431873 CM091756.1 scf7180002754625 99.58 True CONTIG scf7180002754625 441946 misassembled 8592535 8593886 2137 786 CM091767.1 scf7180002754626 99.93 True fake: scaffold gap size wrong estimation (local) 8590437 8591593 3703 2547 CM091767.1 scf7180002754626 99.91 True fake: scaffold gap size wrong estimation (local) 8588199 8590436 6277 4040 CM091767.1 scf7180002754626 99.82 True translocation 15653109 15653826 6995 6278 CM091757.1 scf7180002754626 96.93 True CONTIG scf7180002754626 6995 misassembled 1046576 1063418 16631 1 CM091755.1 scf7180002754627 98.38 True fake: scaffold gap size wrong estimation (local) 1041118 1046659 25671 20131 CM091755.1 scf7180002754627 99.95 True CONTIG scf7180002754627 28027 correct 15182831 15186067 3247 1 CM091758.1 scf7180002754628 98.69 True fake: scaffold gap size wrong estimation (local) 15171211 15179222 15239 7169 CM091758.1 scf7180002754628 98.25 True fake: scaffold gap size wrong estimation (local) 15165871 15169966 19355 15260 CM091758.1 scf7180002754628 99.24 True fake: scaffold gap size wrong estimation (local) 15165209 15165734 25369 24844 CM091758.1 scf7180002754628 99.62 True indel: indel (> 5bp) 15163956 15165202 26616 25370 CM091758.1 scf7180002754628 99.44 True indel: indel (> 5bp) 15162897 15163955 27683 26625 CM091758.1 scf7180002754628 99.62 True local misassembly 15158211 15160610 30083 27684 CM091758.1 scf7180002754628 99.67 True fake: scaffold gap size wrong estimation (local) 15154020 15157597 34303 30720 CM091758.1 scf7180002754628 98.66 True local misassembly 15137718 15153446 49588 34327 CM091758.1 scf7180002754628 95.8 True fake: scaffold gap size wrong estimation (local) 15133290 15136796 53774 50200 CM091758.1 scf7180002754628 98.34 True fake: scaffold gap size wrong estimation (local) 15120179 15132169 67922 56215 CM091758.1 scf7180002754628 96.98 True CONTIG scf7180002754628 67922 correct 16751668 16758281 6744 125 CM091756.1 scf7180002754629 99.89 True fake: scaffold gap size wrong estimation (local) 16746008 16751515 12375 6837 CM091756.1 scf7180002754629 99.73 True CONTIG scf7180002754629 16123 correct 3538762 3553105 1 14350 CM091759.1 scf7180002754630 99.64 True translocation 10866305 10869231 17277 14351 CM091765.1 scf7180002754630 99.9 True local misassembly 10867144 10867694 21271 20714 CM091765.1 scf7180002754630 97.29 True fake: scaffold gap size wrong estimation (local) 10854324 10865922 33576 21981 CM091765.1 scf7180002754630 99.83 True CONTIG scf7180002754630 33903 misassembled 7695961 7696783 213 1036 CM091767.1 scf7180002754631 98.79 True local misassembly 7699275 7703896 2037 6658 CM091767.1 scf7180002754631 99.98 True local misassembly 7705633 7712774 6685 13769 CM091767.1 scf7180002754631 99.12 True CONTIG scf7180002754631 13886 correct 17510686 17512699 2014 1 CM091751.1 scf7180002754632 99.4 True fake: scaffold gap size wrong estimation (local) 17504513 17510529 8278 2264 CM091751.1 scf7180002754632 99.95 True fake: scaffold gap size wrong estimation (local) 17481764 17503530 31359 9608 CM091751.1 scf7180002754632 99.89 True relocation, scaffold gap is present, inconsistency = -14674 17455112 17481633 71706 46164 CM091751.1 scf7180002754632 96.26 True relocation, scaffold gap is present, inconsistency = -23695 17441124 17454581 109391 95932 CM091751.1 scf7180002754632 99.96 True CONTIG scf7180002754632 109391 misassembled 3481092 3483585 1 2481 CM091752.1 scf7180002754633 99.16 True fake: scaffold gap size wrong estimation (local) 3483857 3493446 2502 12222 CM091752.1 scf7180002754633 98.63 True fake: scaffold gap size wrong estimation (local) 3493532 3565374 14324 86225 CM091752.1 scf7180002754633 99.56 True relocation, scaffold gap is present, inconsistency = -62699 3502991 3503561 86541 87111 CM091752.1 scf7180002754633 100.0 True fake: scaffold gap size wrong estimation (local) 3565449 3566296 148010 148856 CM091752.1 scf7180002754633 99.76 True fake: scaffold gap size wrong estimation (local) 3568165 3570883 151672 154390 CM091752.1 scf7180002754633 100.0 True CONTIG scf7180002754633 154390 misassembled 2211897 2213638 24 1765 CM091764.1 scf7180002754634 99.83 True indel: indel (> 5bp) 2213639 2214396 1776 2533 CM091764.1 scf7180002754634 100.0 True indel: indel (<= 5bp) 2214397 2215083 2535 3221 CM091764.1 scf7180002754634 100.0 True local misassembly 2219502 2228642 3334 12474 CM091764.1 scf7180002754634 99.9 True fake: scaffold gap size wrong estimation (local) 2228643 2231403 12565 15325 CM091764.1 scf7180002754634 98.37 True fake: scaffold gap size wrong estimation (local) 2231992 2236499 15914 20305 CM091764.1 scf7180002754634 97.21 True fake: scaffold gap size wrong estimation (local) 2236537 2243588 22973 29742 CM091764.1 scf7180002754634 95.66 True fake: scaffold gap size wrong estimation (local) 2243929 2250460 30083 36614 CM091764.1 scf7180002754634 99.89 True CONTIG scf7180002754634 36614 correct 11115419 11118616 3498 6695 CM091765.1 scf7180002754635 99.34 True fake: scaffold gap size wrong estimation (local) 11118696 11124701 9119 15128 CM091765.1 scf7180002754635 99.8 True CONTIG scf7180002754635 15128 correct 168454 171280 76 2902 CM091763.1 scf7180002754636 99.08 True fake: scaffold gap size wrong estimation (local) 171281 175143 3846 7708 CM091763.1 scf7180002754636 99.95 True fake: scaffold gap size wrong estimation (local) 175428 176535 7856 8961 CM091763.1 scf7180002754636 99.82 True CONTIG scf7180002754636 8961 correct 5421714 5425428 1 3715 CM091768.1 scf7180002754637 100.0 True fake: scaffold gap size wrong estimation (local) 5425733 5431289 5165 10721 CM091768.1 scf7180002754637 99.69 True indel: indel (<= 5bp) 5431290 5433270 10723 12703 CM091768.1 scf7180002754637 100.0 True CONTIG scf7180002754637 19991 correct 257677 258977 1301 1 CM091763.1 scf7180002754638 99.93 True local misassembly 223875 256146 33425 1302 CM091763.1 scf7180002754638 99.26 True fake: scaffold gap size wrong estimation (local) 210738 223609 50087 37211 CM091763.1 scf7180002754638 99.95 True fake: not a misassembly (possible transposable element) 198562 201360 52886 50088 CM091763.1 scf7180002754638 99.98 True fake: not a misassembly (possible transposable element) 187066 197975 80085 69173 CM091763.1 scf7180002754638 99.94 True fake: scaffold gap size wrong estimation (local) 180173 186468 87158 80863 CM091763.1 scf7180002754638 99.98 True fake: scaffold gap size wrong estimation (local) 177119 180119 96280 93281 CM091763.1 scf7180002754638 99.93 True CONTIG scf7180002754638 96280 correct 3591870 3593292 1423 1 CM091768.1 scf7180002754639 100.0 True fake: scaffold gap size wrong estimation (local) 3590682 3591612 2877 1947 CM091768.1 scf7180002754639 97.85 True local misassembly 3578704 3589988 14097 2878 CM091768.1 scf7180002754639 99.41 True relocation, scaffold gap is present, inconsistency = -10328 3575409 3578152 27719 24977 CM091768.1 scf7180002754639 99.96 True CONTIG scf7180002754639 27876 misassembled 4123088 4127567 4480 1 CM091768.1 scf7180002754640 99.98 True fake: scaffold gap size wrong estimation (local) 4113446 4120765 12385 5062 CM091768.1 scf7180002754640 99.84 True fake: scaffold gap size wrong estimation (local) 4108402 4113100 19532 14833 CM091768.1 scf7180002754640 99.94 True fake: scaffold gap size wrong estimation (local) 4103477 4108138 29162 24486 CM091768.1 scf7180002754640 99.87 True translocation 622712 623328 29779 29163 CM091755.1 scf7180002754640 99.88 True CONTIG scf7180002754640 29779 misassembled 37172 39879 1 2708 CM091755.1 scf7180002754641 99.96 True fake: scaffold gap size wrong estimation (local) 42615 44890 6533 8808 CM091755.1 scf7180002754641 99.87 True CONTIG scf7180002754641 8808 correct 4672352 4684629 1 12111 CM091754.1 scf7180002754642 97.88 True CONTIG scf7180002754642 14343 correct 7601241 7620486 55 18762 CM091767.1 scf7180002754643 97.4 True CONTIG scf7180002754643 29167 correct 2486162 2487654 1 1493 CM091754.1 scf7180002754644 99.8 True local misassembly 2488104 2488928 1856 2680 CM091754.1 scf7180002754644 99.64 True fake: scaffold gap size wrong estimation (local) 2490236 2491277 3993 5034 CM091754.1 scf7180002754644 99.81 True indel: indel (> 5bp) 2491555 2492629 5326 6400 CM091754.1 scf7180002754644 100.0 True indel: indel (> 5bp) 2493024 2493875 6810 7661 CM091754.1 scf7180002754644 99.77 True indel: stretch of mismatches 2494314 2494818 8100 8604 CM091754.1 scf7180002754644 100.0 True fake: scaffold gap size wrong estimation (local) 2496495 2498013 9397 10915 CM091754.1 scf7180002754644 98.95 True indel: indel (> 5bp) 2498276 2499217 11167 12108 CM091754.1 scf7180002754644 99.47 True indel: indel (<= 5bp) 2499218 2500333 12110 13225 CM091754.1 scf7180002754644 99.37 True indel: indel (<= 5bp) 2500677 2502284 13570 15177 CM091754.1 scf7180002754644 99.5 True indel: indel (<= 5bp) 2502690 2503752 15585 16647 CM091754.1 scf7180002754644 98.87 True fake: scaffold gap size wrong estimation (local) 2504575 2517006 22750 35262 CM091754.1 scf7180002754644 98.67 True local misassembly 2517241 2550658 35385 68724 CM091754.1 scf7180002754644 99.17 True local misassembly 2552744 2553336 68725 69318 CM091754.1 scf7180002754644 96.98 True CONTIG scf7180002754644 69318 correct 1419855 1422247 1 2393 CM091764.1 scf7180002754645 100.0 True indel: indel (> 5bp) 1422248 1423844 2402 3998 CM091764.1 scf7180002754645 99.25 True local misassembly 1424423 1428944 3999 8520 CM091764.1 scf7180002754645 99.56 True relocation, scaffold gap is present, inconsistency = -853707 575258 578723 8541 12136 CM091764.1 scf7180002754645 96.92 True fake: not a misassembly (possible transposable element) 1347822 1349925 14260 12157 CM091764.1 scf7180002754645 100.0 True fake: not a misassembly (possible transposable element) 578877 580345 15838 17307 CM091764.1 scf7180002754645 99.24 True relocation, inconsistency = 759725 1340071 1346162 23394 17308 CM091764.1 scf7180002754645 99.7 True relocation, scaffold gap is present, inconsistency = 83553 1429736 1430799 23415 24478 CM091764.1 scf7180002754645 100.0 True fake: not a misassembly (possible transposable element) 580755 581382 24499 25126 CM091764.1 scf7180002754645 100.0 True fake: not a misassembly (possible transposable element) 1432982 1434823 26664 28505 CM091764.1 scf7180002754645 99.36 True relocation, inconsistency = -851218 583606 586588 28506 31487 CM091764.1 scf7180002754645 99.9 True relocation, scaffold gap is present, inconsistency = 748310 1335002 1340008 36597 31591 CM091764.1 scf7180002754645 99.98 True fake: not a misassembly (possible transposable element) 1437503 1439608 36618 38723 CM091764.1 scf7180002754645 99.91 True fake: not a misassembly (possible transposable element) 1302116 1335124 74814 41808 CM091764.1 scf7180002754645 99.94 True relocation, scaffold gap is present, inconsistency = -14500 1280723 1302236 111003 89194 CM091764.1 scf7180002754645 97.08 True fake: scaffold gap size wrong estimation (local) 1248395 1280512 142983 111176 CM091764.1 scf7180002754645 98.9 True CONTIG scf7180002754645 151380 misassembled 10358127 10368550 1 10070 CM091765.1 scf7180002754646 96.26 True local misassembly 10368816 10373714 10222 15124 CM091765.1 scf7180002754646 99.61 True relocation, scaffold gap is present, inconsistency = -10155 10365344 10365827 16909 17429 CM091765.1 scf7180002754646 96.43 True CONTIG scf7180002754646 25223 misassembled 5800998 5801729 1 732 CM091767.1 scf7180002754647 99.32 True indel: indel (<= 5bp) 5801731 5802475 733 1477 CM091767.1 scf7180002754647 98.79 True fake: scaffold gap size wrong estimation (local) 5804504 5805124 2508 3128 CM091767.1 scf7180002754647 97.42 True indel: indel (<= 5bp) 5805571 5806519 3578 4526 CM091767.1 scf7180002754647 99.05 True indel: indel (<= 5bp) 5806520 5807743 4528 5751 CM091767.1 scf7180002754647 99.35 True fake: scaffold gap size wrong estimation (local) 5807744 5808297 5768 6321 CM091767.1 scf7180002754647 99.28 True indel: indel (> 5bp) 5808543 5809589 6580 7626 CM091767.1 scf7180002754647 99.52 True fake: scaffold gap size wrong estimation (local) 5809955 5813401 7968 11414 CM091767.1 scf7180002754647 99.59 True indel: indel (> 5bp) 5813598 5814113 11587 12102 CM091767.1 scf7180002754647 98.84 True indel: indel (> 5bp) 5814561 5817060 12557 15056 CM091767.1 scf7180002754647 99.44 True indel: indel (> 5bp) 5817067 5818367 15057 16357 CM091767.1 scf7180002754647 99.77 True CONTIG scf7180002754647 16357 correct 1763592 1765150 1 1559 CM091764.1 scf7180002754648 100.0 True fake: scaffold gap size wrong estimation (local) 1766321 1770648 2082 6403 CM091764.1 scf7180002754648 99.19 True local misassembly 1770909 1776184 6774 12061 CM091764.1 scf7180002754648 97.54 True fake: scaffold gap size wrong estimation (local) 1776789 1782316 12370 17897 CM091764.1 scf7180002754648 99.96 True fake: scaffold gap size wrong estimation (local) 1783205 1787117 18517 22427 CM091764.1 scf7180002754648 99.36 True translocation, scaffold gap is present 9102167 9102808 22448 23089 CM091767.1 scf7180002754648 100.0 True CONTIG scf7180002754648 26134 misassembled 16669419 16698120 17 28717 CM091756.1 scf7180002754649 99.93 True relocation, scaffold gap is present, inconsistency = -11178 16698833 16719769 40608 61549 CM091756.1 scf7180002754649 99.95 True CONTIG scf7180002754649 80050 misassembled 16725754 16743009 16942 1 CM091756.1 scf7180002754650 97.57 True CONTIG scf7180002754650 16942 correct 3326751 3328182 1 1432 CM091753.1 scf7180002754651 99.93 True local misassembly 3328303 3328974 1433 2104 CM091753.1 scf7180002754651 97.02 True fake: scaffold gap size wrong estimation (local) 3329758 3330503 3559 4305 CM091753.1 scf7180002754651 99.73 True fake: scaffold gap size wrong estimation (local) 3330719 3332078 4520 5880 CM091753.1 scf7180002754651 97.43 True local misassembly 3332663 3333390 6411 7113 CM091753.1 scf7180002754651 96.15 True local misassembly 3334125 3336494 7813 10182 CM091753.1 scf7180002754651 99.96 True CONTIG scf7180002754651 10182 correct 9503252 9521906 1 18226 CM091767.1 scf7180002754652 96.72 True CONTIG scf7180002754652 18615 correct 232329 241682 1 9145 CM091753.1 scf7180002754653 97.75 True fake: scaffold gap size wrong estimation (local) 242192 244409 15631 17849 CM091753.1 scf7180002754653 99.95 True translocation, scaffold gap is present 16861571 16862095 18393 17870 CM091752.1 scf7180002754653 99.43 True CONTIG scf7180002754653 19657 misassembled 1851986 1860178 7939 1 CM091764.1 scf7180002754654 96.86 True fake: scaffold gap size wrong estimation (local) 1850350 1851619 9575 8306 CM091764.1 scf7180002754654 98.43 True local misassembly 1846777 1849869 12668 9576 CM091764.1 scf7180002754654 99.94 True translocation, scaffold gap is present 9112503 9113152 14171 13522 CM091767.1 scf7180002754654 100.0 True CONTIG scf7180002754654 14171 misassembled 390986 395140 4186 1 CM091764.1 scf7180002754655 99.81 True fake: scaffold gap size wrong estimation (local) 384018 390770 11084 4333 CM091764.1 scf7180002754655 99.97 True fake: scaffold gap size wrong estimation (local) 381215 384015 20732 17932 CM091764.1 scf7180002754655 99.79 True relocation, inconsistency = 12904 367732 368310 21311 20733 CM091764.1 scf7180002754655 97.0 True local misassembly 366201 367239 22526 21488 CM091764.1 scf7180002754655 99.9 True indel: indel (<= 5bp) 364001 366200 24727 22528 CM091764.1 scf7180002754655 99.91 True fake: scaffold gap size wrong estimation (local) 362610 364231 29509 27870 CM091764.1 scf7180002754655 99.26 True CONTIG scf7180002754655 29509 misassembled 3507357 3510072 604 3319 CM091768.1 scf7180002754656 100.0 True local misassembly 3510923 3512657 3320 5054 CM091768.1 scf7180002754656 98.85 True indel: indel (> 5bp) 3512691 3514766 5055 7130 CM091768.1 scf7180002754656 100.0 True indel: indel (<= 5bp) 3514767 3515446 7132 7811 CM091768.1 scf7180002754656 99.56 True indel: indel (<= 5bp) 3515448 3517632 7812 9996 CM091768.1 scf7180002754656 99.95 True indel: indel (<= 5bp) 3517634 3518415 9997 10778 CM091768.1 scf7180002754656 99.74 True fake: scaffold gap size wrong estimation (local) 3518563 3523187 17571 22200 CM091768.1 scf7180002754656 99.57 True fake: scaffold gap size wrong estimation (local) 3523196 3526885 26113 29805 CM091768.1 scf7180002754656 99.78 True indel: indel (> 5bp) 3526931 3555428 29835 58361 CM091768.1 scf7180002754656 99.73 True relocation, scaffold gap is present, inconsistency = -24042 3556851 3562104 83826 89077 CM091768.1 scf7180002754656 99.92 True CONTIG scf7180002754656 89077 misassembled 14941291 15009456 68520 1 CM091756.1 scf7180002754657 99.03 True relocation, scaffold gap is present, inconsistency = -52136 14962365 14963367 99582 98580 CM091756.1 scf7180002754657 99.3 True fake: scaffold gap size wrong estimation (local) 14917002 14940585 144538 120934 CM091756.1 scf7180002754657 99.28 True indel: indel (<= 5bp) 14870277 14916973 191268 144565 CM091756.1 scf7180002754657 99.41 True CONTIG scf7180002754657 191268 misassembled 20118687 20124260 1 5599 CM091751.1 scf7180002754658 98.75 True fake: scaffold gap size wrong estimation (local) 20124410 20146369 5725 27786 CM091751.1 scf7180002754658 98.74 True fake: scaffold gap size wrong estimation (local) 20146759 20168113 28185 50235 CM091751.1 scf7180002754658 97.23 True relocation, scaffold gap is present, inconsistency = -16028 20161098 20161805 59248 59955 CM091751.1 scf7180002754658 97.77 True fake: scaffold gap size wrong estimation (local) 20168267 20178299 66368 76409 CM091751.1 scf7180002754658 98.56 True fake: scaffold gap size wrong estimation (local) 20181974 20184262 80921 83209 CM091751.1 scf7180002754658 99.96 True fake: scaffold gap size wrong estimation (local) 20185091 20186046 84229 85184 CM091751.1 scf7180002754658 99.37 True fake: scaffold gap size wrong estimation (local) 20186470 20201536 86238 101283 CM091751.1 scf7180002754658 99.1 True CONTIG scf7180002754658 101289 misassembled 13453642 13455503 1881 20 CM091758.1 scf7180002754659 98.28 True fake: scaffold gap size wrong estimation (local) 13444473 13450651 9679 3759 CM091758.1 scf7180002754659 95.44 True fake: scaffold gap size wrong estimation (local) 13436600 13443732 17830 10675 CM091758.1 scf7180002754659 98.98 True translocation, scaffold gap is present 8358353 8359761 19265 17851 CM091767.1 scf7180002754659 96.83 True translocation 530951 532493 20946 19405 CM091764.1 scf7180002754659 99.16 True translocation, scaffold gap is present 9192625 9194339 22904 21190 CM091767.1 scf7180002754659 95.1 True CONTIG scf7180002754659 22904 misassembled 2098640 2100122 1 1483 CM091764.1 scf7180002754660 100.0 True fake: scaffold gap size wrong estimation (local) 2100856 2104215 1504 4862 CM091764.1 scf7180002754660 99.76 True fake: scaffold gap size wrong estimation (local) 2104297 2106895 8449 11047 CM091764.1 scf7180002754660 100.0 True local misassembly 2107930 2108906 11048 12024 CM091764.1 scf7180002754660 97.95 True indel: indel (> 5bp) 2108907 2109548 12032 12673 CM091764.1 scf7180002754660 99.84 True fake: scaffold gap size wrong estimation (local) 2109549 2110830 12776 14057 CM091764.1 scf7180002754660 100.0 True local misassembly 2111599 2113651 14058 16110 CM091764.1 scf7180002754660 98.64 True local misassembly 2114005 2116854 16111 18960 CM091764.1 scf7180002754660 99.3 True indel: indel (<= 5bp) 2117038 2121223 19146 23331 CM091764.1 scf7180002754660 99.98 True indel: indel (<= 5bp) 2121224 2122431 23333 24540 CM091764.1 scf7180002754660 100.0 True CONTIG scf7180002754660 33214 correct 2379451 2382916 3467 1 CM091764.1 scf7180002754661 99.68 True fake: scaffold gap size wrong estimation (local) 2370605 2379219 12018 3699 CM091764.1 scf7180002754661 96.27 True fake: scaffold gap size wrong estimation (local) 2357629 2369699 24270 12197 CM091764.1 scf7180002754661 99.64 True CONTIG scf7180002754661 24270 correct 4007067 4011246 4217 38 CM091752.1 scf7180002754662 99.78 True fake: scaffold gap size wrong estimation (local) 4005356 4006211 5753 4897 CM091752.1 scf7180002754662 99.87 True fake: scaffold gap size wrong estimation (local) 3999234 4003851 10389 5774 CM091752.1 scf7180002754662 99.89 True CONTIG scf7180002754662 14430 correct 3998014 3998936 923 1 CM091752.1 scf7180002754663 100.0 True CONTIG scf7180002754663 923 correct 8562269 8566396 4141 15 CM091767.1 scf7180002754664 99.64 True fake: scaffold gap size wrong estimation (local) 8555772 8561653 10400 4490 CM091767.1 scf7180002754664 99.69 True CONTIG scf7180002754664 10400 correct 3244791 3247011 1 2221 CM091752.1 scf7180002754665 99.77 True local misassembly 3247499 3251057 2222 5780 CM091752.1 scf7180002754665 99.44 True indel: indel (> 5bp) 3251067 3252406 5781 7120 CM091752.1 scf7180002754665 99.93 True CONTIG scf7180002754665 10419 correct 2143066 2146035 1 2982 CM091764.1 scf7180002754666 99.86 True fake: scaffold gap size wrong estimation (local) 2146633 2153743 3082 10243 CM091764.1 scf7180002754666 99.34 True CONTIG scf7180002754666 10243 correct 17560752 17576361 1 15610 CM091751.1 scf7180002754667 99.96 True relocation, scaffold gap is present, inconsistency = -10345 17576662 17578738 26256 28332 CM091751.1 scf7180002754667 100.0 True fake: scaffold gap size wrong estimation (local) 17578835 17622186 28404 71820 CM091751.1 scf7180002754667 99.91 True fake: scaffold gap size wrong estimation (local) 17622291 17636248 71938 85943 CM091751.1 scf7180002754667 99.8 True CONTIG scf7180002754667 85943 misassembled 1269493 1271706 44 2262 CM091763.1 scf7180002754668 99.46 True fake: scaffold gap size wrong estimation (local) 1271807 1272918 2295 3446 CM091763.1 scf7180002754668 98.14 True fake: scaffold gap size wrong estimation (local) 1273818 1276900 3693 6771 CM091763.1 scf7180002754668 99.58 True fake: scaffold gap size wrong estimation (local) 1278070 1308049 10114 40037 CM091763.1 scf7180002754668 99.69 True relocation, scaffold gap is present, inconsistency = -29140 1291494 1292188 52622 53316 CM091763.1 scf7180002754668 100.0 True fake: scaffold gap size wrong estimation (local) 1308072 1351675 69208 112816 CM091763.1 scf7180002754668 99.83 True CONTIG scf7180002754668 112816 misassembled 4698899 4700581 1 1683 CM091768.1 scf7180002754669 100.0 True indel: indel (<= 5bp) 4700583 4703459 1684 4560 CM091768.1 scf7180002754669 100.0 True local misassembly 4703832 4705226 4561 5955 CM091768.1 scf7180002754669 97.92 True indel: indel (<= 5bp) 4705227 4706394 5957 7124 CM091768.1 scf7180002754669 100.0 True fake: scaffold gap size wrong estimation (local) 4707047 4708284 7347 8584 CM091768.1 scf7180002754669 98.63 True indel: indel (> 5bp) 4708330 4709063 8585 9318 CM091768.1 scf7180002754669 100.0 True indel: indel (<= 5bp) 4709065 4715349 9319 15603 CM091768.1 scf7180002754669 99.9 True local misassembly 4715962 4717731 16211 17978 CM091768.1 scf7180002754669 98.7 True indel: indel (> 5bp) 4717842 4723968 18082 24207 CM091768.1 scf7180002754669 99.76 True CONTIG scf7180002754669 24207 correct 17297654 17299766 1 2113 CM091751.1 scf7180002754670 100.0 True local misassembly 17300620 17303083 2114 4577 CM091751.1 scf7180002754670 98.78 True indel: indel (<= 5bp) 17303084 17305695 4579 7190 CM091751.1 scf7180002754670 99.85 True local misassembly 17305901 17310898 7191 12188 CM091751.1 scf7180002754670 98.78 True fake: scaffold gap size wrong estimation (local) 17311177 17312733 13417 15063 CM091751.1 scf7180002754670 95.48 True fake: scaffold gap size wrong estimation (local) 17313152 17316398 15504 18757 CM091751.1 scf7180002754670 99.94 True CONTIG scf7180002754670 18757 correct 13676096 13706864 30342 1 CM091755.1 scf7180002754671 97.89 True CONTIG scf7180002754671 40289 correct 1734429 1739416 5024 1 CM091764.1 scf7180002754672 98.43 True indel: indel (<= 5bp) 1732016 1734403 7442 5054 CM091764.1 scf7180002754672 99.58 True fake: scaffold gap size wrong estimation (local) 1728184 1731773 11414 7868 CM091764.1 scf7180002754672 98.61 True local misassembly 1729369 1730003 12730 12097 CM091764.1 scf7180002754672 96.69 True fake: scaffold gap size wrong estimation (local) 1725195 1728140 16931 13953 CM091764.1 scf7180002754672 99.56 True fake: scaffold gap size wrong estimation (local) 1720844 1724141 21027 17678 CM091764.1 scf7180002754672 99.18 True CONTIG scf7180002754672 21027 correct 6374316 6375801 1 1488 CM091768.1 scf7180002754673 98.45 True fake: not a misassembly (possible transposable element) 8637305 8638515 1519 2729 CM091767.1 scf7180002754673 97.52 True fake: not a misassembly (possible transposable element) 6376048 6378887 3389 6221 CM091768.1 scf7180002754673 99.08 True translocation, scaffold gap is present 11535648 11537973 6242 8567 CM091765.1 scf7180002754673 100.0 True translocation 4985180 4986321 8643 9778 CM091768.1 scf7180002754673 95.89 True translocation, scaffold gap is present 16188642 16189269 10425 9799 CM091757.1 scf7180002754673 98.89 True translocation, scaffold gap is present 17005745 17006266 11830 11309 CM091752.1 scf7180002754673 99.62 True translocation, scaffold gap is present 15540286 15541363 12006 13083 CM091757.1 scf7180002754673 99.63 True CONTIG scf7180002754673 14804 misassembled 16271694 16288791 1 17139 CM091757.1 scf7180002754674 99.88 True CONTIG scf7180002754674 17139 correct 17646215 17656475 10240 203 CM091751.1 scf7180002754675 96.85 True CONTIG scf7180002754675 14159 correct 14469796 14480621 1 10848 CM091757.1 scf7180002754676 99.09 True CONTIG scf7180002754676 10877 correct 13135258 13241460 106371 461 CM091758.1 scf7180002754677 99.46 True CONTIG scf7180002754677 106371 correct 3570870 3590637 1 19331 CM091752.1 scf7180002754678 96.87 True fake: scaffold gap size wrong estimation (local) 3591132 3598201 19860 26832 CM091752.1 scf7180002754678 95.18 True fake: scaffold gap size wrong estimation (local) 3598102 3613836 28640 44148 CM091752.1 scf7180002754678 98.02 True fake: scaffold gap size wrong estimation (extensive) 3613769 3645097 53741 85048 CM091752.1 scf7180002754678 99.19 True relocation, scaffold gap is present, inconsistency = -14134 3645093 3665735 99178 119886 CM091752.1 scf7180002754678 98.95 True fake: scaffold gap size wrong estimation (local) 3665842 3667853 123064 125075 CM091752.1 scf7180002754678 99.65 True indel: indel (<= 5bp) 3667854 3668533 125077 125756 CM091752.1 scf7180002754678 99.85 True indel: indel (<= 5bp) 3668534 3670137 125760 127363 CM091752.1 scf7180002754678 99.81 True fake: scaffold gap size wrong estimation (local) 3670701 3673625 127536 130460 CM091752.1 scf7180002754678 99.83 True fake: scaffold gap size wrong estimation (local) 3673522 3675211 131704 133392 CM091752.1 scf7180002754678 99.05 True CONTIG scf7180002754678 133409 misassembled 13431836 13432549 1 714 CM091758.1 scf7180002754679 99.58 True CONTIG scf7180002754679 1450 correct 15189859 15190974 1 1116 CM091758.1 scf7180002754680 100.0 True indel: indel (<= 5bp) 15190985 15191538 1130 1683 CM091758.1 scf7180002754680 99.82 True indel: indel (> 5bp) 15191551 15193458 1684 3591 CM091758.1 scf7180002754680 98.85 True indel: indel (<= 5bp) 15193463 15194149 3592 4278 CM091758.1 scf7180002754680 99.42 True local misassembly 15194847 15196338 4279 5770 CM091758.1 scf7180002754680 97.99 True indel: stretch of mismatches 15196400 15196975 5832 6407 CM091758.1 scf7180002754680 98.09 True indel: indel (<= 5bp) 15196978 15197478 6408 6908 CM091758.1 scf7180002754680 99.4 True fake: scaffold gap size wrong estimation (local) 15197943 15198457 7190 7704 CM091758.1 scf7180002754680 99.22 True indel: indel (<= 5bp) 15198635 15199385 7880 8630 CM091758.1 scf7180002754680 99.33 True local misassembly 15200195 15202188 9121 11114 CM091758.1 scf7180002754680 98.9 True indel: indel (> 5bp) 15202390 15203304 11302 12216 CM091758.1 scf7180002754680 98.91 True local misassembly 15203774 15205632 12217 14075 CM091758.1 scf7180002754680 96.61 True fake: scaffold gap size wrong estimation (local) 15205859 15206532 14332 15005 CM091758.1 scf7180002754680 99.7 True indel: indel (<= 5bp) 15206533 15207404 15007 15878 CM091758.1 scf7180002754680 99.43 True fake: scaffold gap size wrong estimation (local) 15208969 15209846 16331 17208 CM091758.1 scf7180002754680 96.7 True local misassembly 15210841 15211606 17667 18432 CM091758.1 scf7180002754680 97.13 True indel: indel (<= 5bp) 15211608 15212126 18433 18951 CM091758.1 scf7180002754680 99.81 True local misassembly 15212997 15213621 19808 20432 CM091758.1 scf7180002754680 99.84 True indel: indel (<= 5bp) 15213622 15214310 20438 21126 CM091758.1 scf7180002754680 99.42 True indel: indel (<= 5bp) 15214315 15217044 21127 23856 CM091758.1 scf7180002754680 99.56 True indel: indel (<= 5bp) 15217046 15217827 23857 24638 CM091758.1 scf7180002754680 99.49 True fake: scaffold gap size wrong estimation (local) 15218146 15223670 24960 30496 CM091758.1 scf7180002754680 99.8 True indel: indel (<= 5bp) 15223698 15267688 30520 74339 CM091758.1 scf7180002754680 98.66 True relocation, scaffold gap is present, inconsistency = -25385 15267615 15271394 99651 103479 CM091758.1 scf7180002754680 97.9 True fake: scaffold gap size wrong estimation (local) 15274416 15275730 105702 107021 CM091758.1 scf7180002754680 98.72 True fake: scaffold gap size wrong estimation (local) 15276394 15285208 107685 116461 CM091758.1 scf7180002754680 98.65 True fake: scaffold gap size wrong estimation (local) 15286532 15295930 117369 126617 CM091758.1 scf7180002754680 97.42 True CONTIG scf7180002754680 126617 misassembled 14404399 14414289 10180 273 CM091753.1 scf7180002754681 99.24 True fake: scaffold gap size wrong estimation (local) 14389939 14404066 25630 11462 CM091753.1 scf7180002754681 99.24 True relocation, scaffold gap is present, inconsistency = -14017 14350295 14389837 79073 39749 CM091753.1 scf7180002754681 98.66 True relocation, scaffold gap is present, inconsistency = -21404 14334511 14350303 116239 100469 CM091753.1 scf7180002754681 99.1 True CONTIG scf7180002754681 116239 misassembled 4164110 4166834 1 2725 CM091754.1 scf7180002754682 99.96 True fake: scaffold gap size wrong estimation (local) 4167910 4175004 3404 10499 CM091754.1 scf7180002754682 99.99 True fake: scaffold gap size wrong estimation (extensive) 4175935 4180184 19638 23920 CM091754.1 scf7180002754682 99.48 True fake: scaffold gap size wrong estimation (local) 4180351 4194778 24073 38501 CM091754.1 scf7180002754682 99.99 True CONTIG scf7180002754682 38501 correct 20034020 20055434 343 21765 CM091751.1 scf7180002754683 99.12 True indel: indel (> 5bp) 20055539 20063498 21893 29844 CM091751.1 scf7180002754683 98.96 True fake: scaffold gap size wrong estimation (local) 20065052 20070806 30184 35982 CM091751.1 scf7180002754683 98.56 True fake: scaffold gap size wrong estimation (local) 20070757 20071392 38576 39213 CM091751.1 scf7180002754683 96.72 True CONTIG scf7180002754683 39213 correct 3923811 3928110 4302 1 CM091757.1 scf7180002754684 99.74 True indel: indel (<= 5bp) 3923184 3923720 4927 4395 CM091757.1 scf7180002754684 97.39 True fake: scaffold gap size wrong estimation (local) 3920506 3921211 7333 6625 CM091757.1 scf7180002754684 99.3 True fake: scaffold gap size wrong estimation (local) 3908982 3920282 19329 8054 CM091757.1 scf7180002754684 99.36 True relocation, scaffold gap is present, inconsistency = -11339 3845809 3908911 93897 30739 CM091757.1 scf7180002754684 99.36 True indel: indel (<= 5bp) 3804540 3845752 135174 93959 CM091757.1 scf7180002754684 99.72 True translocation, scaffold gap is present 6054986 6070043 170389 185446 CM091768.1 scf7180002754684 100.0 True relocation, scaffold gap is present, inconsistency = -14998 6069891 6093051 200292 223506 CM091768.1 scf7180002754684 99.71 True fake: scaffold gap size wrong estimation (extensive) 6093004 6106906 231064 244968 CM091768.1 scf7180002754684 99.99 True fake: scaffold gap size wrong estimation (local) 6106920 6117128 251883 262092 CM091768.1 scf7180002754684 99.97 True translocation, scaffold gap is present 3788358 3804534 281278 265396 CM091757.1 scf7180002754684 97.59 True translocation, scaffold gap is present 6117180 6118558 284359 285737 CM091768.1 scf7180002754684 100.0 True fake: scaffold gap size wrong estimation (local) 6119267 6127756 288282 296770 CM091768.1 scf7180002754684 99.99 True translocation, scaffold gap is present 13508878 13516506 298561 306188 CM091758.1 scf7180002754684 99.88 True translocation, scaffold gap is present 6127714 6136180 308315 316776 CM091768.1 scf7180002754684 99.94 True translocation, scaffold gap is present 3785144 3788478 321200 317854 CM091757.1 scf7180002754684 98.48 True fake: scaffold gap size wrong estimation (local) 3780991 3784579 326284 322690 CM091757.1 scf7180002754684 99.11 True translocation, scaffold gap is present 13517486 13520451 326328 329433 CM091758.1 scf7180002754684 96.02 True translocation 6136265 6137916 329434 331085 CM091768.1 scf7180002754684 99.84 True translocation, scaffold gap is present 3777605 3780812 334318 331106 CM091757.1 scf7180002754684 99.25 True fake: not a misassembly (possible transposable element) 13522994 13525200 334339 336545 CM091758.1 scf7180002754684 99.95 True fake: not a misassembly (possible transposable element) 3776528 3777668 339729 338586 CM091757.1 scf7180002754684 99.04 True fake: not a misassembly (possible transposable element) 13526984 13529761 339750 342528 CM091758.1 scf7180002754684 99.96 True fake: not a misassembly (possible transposable element) 3761083 3776341 359211 344359 CM091757.1 scf7180002754684 95.76 True CONTIG scf7180002754684 368753 misassembled 428309 434549 1 6238 CM091752.1 scf7180002754685 99.11 True fake: scaffold gap size wrong estimation (local) 436793 444361 8839 16395 CM091752.1 scf7180002754685 98.67 True CONTIG scf7180002754685 16412 correct 18163496 18175129 11654 1 CM091751.1 scf7180002754686 99.29 True fake: scaffold gap size wrong estimation (local) 18159548 18162781 14979 11748 CM091751.1 scf7180002754686 99.57 True fake: scaffold gap size wrong estimation (local) 18155407 18159430 20375 16349 CM091751.1 scf7180002754686 99.13 True fake: scaffold gap size wrong estimation (local) 18109220 18155405 70220 24137 CM091751.1 scf7180002754686 98.54 True indel: indel (> 5bp) 18062620 18109048 116798 70409 CM091751.1 scf7180002754686 98.73 True fake: scaffold gap size wrong estimation (local) 17903270 18062479 276227 117386 CM091751.1 scf7180002754686 98.84 True fake: scaffold gap size wrong estimation (local) 17900906 17901851 278504 277559 CM091751.1 scf7180002754686 98.73 True fake: scaffold gap size wrong estimation (local) 17898337 17899549 280656 279444 CM091751.1 scf7180002754686 99.42 True indel: indel (<= 5bp) 17897074 17897885 281924 281113 CM091751.1 scf7180002754686 99.51 True indel: indel (<= 5bp) 17895578 17896854 283425 282149 CM091751.1 scf7180002754686 99.37 True indel: indel (> 5bp) 17894148 17895483 284867 283532 CM091751.1 scf7180002754686 99.85 True indel: indel (<= 5bp) 17893236 17894147 285780 284869 CM091751.1 scf7180002754686 98.9 True indel: indel (> 5bp) 17885869 17892822 293107 286215 CM091751.1 scf7180002754686 97.92 True relocation, scaffold gap is present, inconsistency = -12670 17883334 17884719 308312 306927 CM091751.1 scf7180002754686 99.13 True indel: indel (<= 5bp) 17882176 17883305 309467 308338 CM091751.1 scf7180002754686 97.52 True local misassembly 17880182 17881807 311142 309517 CM091751.1 scf7180002754686 99.02 True indel: indel (<= 5bp) 17879613 17880181 311714 311146 CM091751.1 scf7180002754686 99.12 True indel: stretch of mismatches 17878729 17879367 312598 311960 CM091751.1 scf7180002754686 98.59 True fake: scaffold gap size wrong estimation (local) 17831258 17878112 363024 313134 CM091751.1 scf7180002754686 98.75 True CONTIG scf7180002754686 363105 misassembled 477005 539494 22 62482 CM091760.1 scf7180002754687 99.87 True indel: indel (> 5bp) 539743 590707 62743 113678 CM091760.1 scf7180002754687 99.86 True fake: scaffold gap size wrong estimation (local) 591339 597459 114280 120401 CM091760.1 scf7180002754687 99.98 True fake: scaffold gap size wrong estimation (local) 598041 604702 120983 127637 CM091760.1 scf7180002754687 99.88 True fake: scaffold gap size wrong estimation (local) 605021 618168 130177 143323 CM091760.1 scf7180002754687 99.95 True fake: scaffold gap size wrong estimation (local) 618187 642535 146667 170985 CM091760.1 scf7180002754687 99.79 True fake: scaffold gap size wrong estimation (extensive) 642199 648891 178236 184932 CM091760.1 scf7180002754687 99.12 True fake: scaffold gap size wrong estimation (local) 650034 650692 186202 186904 CM091760.1 scf7180002754687 99.83 True fake: scaffold gap size wrong estimation (local) 651729 653783 188132 190193 CM091760.1 scf7180002754687 99.7 True fake: not a misassembly (possible transposable element) 5032420 5033097 192800 193477 CM091754.1 scf7180002754687 99.85 True fake: not a misassembly (possible transposable element) 658409 664825 194343 200766 CM091760.1 scf7180002754687 99.92 True fake: scaffold gap size wrong estimation (local) 664948 724306 200859 260066 CM091760.1 scf7180002754687 99.62 True fake: scaffold gap size wrong estimation (local) 724613 752786 261301 289463 CM091760.1 scf7180002754687 99.38 True fake: scaffold gap size wrong estimation (local) 753073 754825 289754 291518 CM091760.1 scf7180002754687 99.31 True indel: indel (<= 5bp) 754832 788018 291527 324482 CM091760.1 scf7180002754687 98.43 True fake: scaffold gap size wrong estimation (extensive) 788018 846860 331866 390699 CM091760.1 scf7180002754687 99.74 True relocation, scaffold gap is present, inconsistency = -15756 846818 857140 406413 416732 CM091760.1 scf7180002754687 99.73 True fake: scaffold gap size wrong estimation (local) 857826 876458 418942 437600 CM091760.1 scf7180002754687 99.56 True fake: scaffold gap size wrong estimation (local) 876729 886479 438018 447734 CM091760.1 scf7180002754687 99.35 True CONTIG scf7180002754687 447734 misassembled 7647169 7661511 14342 1 CM091767.1 scf7180002754688 99.95 True fake: scaffold gap size wrong estimation (local) 7641485 7646251 19129 14363 CM091767.1 scf7180002754688 99.98 True fake: scaffold gap size wrong estimation (local) 7638069 7641183 24269 21155 CM091767.1 scf7180002754688 99.9 True fake: scaffold gap size wrong estimation (local) 7635980 7637832 26265 24414 CM091767.1 scf7180002754688 99.95 True fake: scaffold gap size wrong estimation (local) 7634183 7635081 27814 26916 CM091767.1 scf7180002754688 97.66 True local misassembly 7633173 7633762 28404 27815 CM091767.1 scf7180002754688 100.0 True fake: scaffold gap size wrong estimation (local) 7631112 7633093 30591 28610 CM091767.1 scf7180002754688 99.95 True fake: scaffold gap size wrong estimation (local) 7630413 7631111 31313 30615 CM091767.1 scf7180002754688 99.71 True fake: scaffold gap size wrong estimation (local) 7624010 7630344 37721 31387 CM091767.1 scf7180002754688 99.94 True CONTIG scf7180002754688 37721 correct 4982494 5002811 20340 1 CM091754.1 scf7180002754689 99.98 True fake: scaffold gap size wrong estimation (local) 4979770 4982298 23064 20536 CM091754.1 scf7180002754689 99.96 True fake: scaffold gap size wrong estimation (local) 4974542 4979388 28292 23446 CM091754.1 scf7180002754689 99.98 True indel: stretch of mismatches 4972459 4974526 30375 28308 CM091754.1 scf7180002754689 99.03 True local misassembly 4968852 4971800 33324 30376 CM091754.1 scf7180002754689 100.0 True CONTIG scf7180002754689 33468 correct 5713709 5720517 6809 1 CM091754.1 scf7180002754690 99.96 True fake: scaffold gap size wrong estimation (local) 5712349 5713275 8077 7151 CM091754.1 scf7180002754690 100.0 True fake: scaffold gap size wrong estimation (local) 5711058 5711560 9387 8885 CM091754.1 scf7180002754690 99.8 True fake: scaffold gap size wrong estimation (local) 5709373 5710452 10840 9761 CM091754.1 scf7180002754690 100.0 True indel: indel (<= 5bp) 5708770 5709372 11444 10842 CM091754.1 scf7180002754690 100.0 True fake: scaffold gap size wrong estimation (local) 5561837 5708742 158621 12854 CM091754.1 scf7180002754690 99.11 True CONTIG scf7180002754690 158621 correct 5350063 5373325 23079 132 CM091768.1 scf7180002754691 98.55 True fake: scaffold gap size wrong estimation (local) 5303155 5349886 73325 26607 CM091768.1 scf7180002754691 99.95 True relocation, scaffold gap is present, inconsistency = -46495 5274940 5302970 148378 120005 CM091768.1 scf7180002754691 99.56 True fake: scaffold gap size wrong estimation (local) 5265706 5274319 157566 149159 CM091768.1 scf7180002754691 97.38 True CONTIG scf7180002754691 159673 misassembled 7142333 7199001 296 57034 CM091763.1 scf7180002754692 99.38 True local misassembly 7199065 7213255 57205 71404 CM091763.1 scf7180002754692 99.44 True fake: scaffold gap size wrong estimation (local) 7213439 7264873 71571 123333 CM091763.1 scf7180002754692 98.99 True relocation, scaffold gap is present, inconsistency = -43225 7264754 7267919 166439 169604 CM091763.1 scf7180002754692 99.91 True indel: stretch of mismatches 7268133 7272485 169818 174170 CM091763.1 scf7180002754692 99.61 True relocation, scaffold gap is present, inconsistency = -15527 7272486 7273900 189698 191112 CM091763.1 scf7180002754692 98.45 True indel: stretch of mismatches 7274073 7275412 191285 192624 CM091763.1 scf7180002754692 99.7 True local misassembly 7275413 7278049 192714 195350 CM091763.1 scf7180002754692 99.54 True indel: indel (<= 5bp) 7278436 7279941 195733 197238 CM091763.1 scf7180002754692 99.87 True translocation, scaffold gap is present 2266742 2267753 199845 200856 CM091764.1 scf7180002754692 100.0 True fake: scaffold gap size wrong estimation (local) 2268210 2271053 201313 204156 CM091764.1 scf7180002754692 99.93 True fake: not a misassembly (possible transposable element) 7280260 7285355 204177 209274 CM091763.1 scf7180002754692 99.26 True fake: not a misassembly (possible transposable element) 2271551 2277843 210518 216824 CM091764.1 scf7180002754692 99.63 True fake: scaffold gap size wrong estimation (local) 2277439 2291829 219532 233379 CM091764.1 scf7180002754692 95.86 True relocation, scaffold gap is present, inconsistency = -13320 2291827 2296621 246697 251498 CM091764.1 scf7180002754692 99.87 True CONTIG scf7180002754692 251606 misassembled 963572 972558 9085 11 CM091754.1 scf7180002754693 95.96 True fake: scaffold gap size wrong estimation (local) 962372 963155 10771 9988 CM091754.1 scf7180002754693 98.98 True indel: indel (<= 5bp) 961790 962371 11354 10773 CM091754.1 scf7180002754693 99.83 True local misassembly 960569 961273 12584 11880 CM091754.1 scf7180002754693 99.86 True indel: indel (> 5bp) 958780 960539 14344 12585 CM091754.1 scf7180002754693 99.09 True indel: indel (<= 5bp) 957651 958777 15471 14345 CM091754.1 scf7180002754693 99.73 True indel: indel (> 5bp) 956705 957214 16423 15914 CM091754.1 scf7180002754693 99.61 True local misassembly 955253 956098 17886 17041 CM091754.1 scf7180002754693 99.53 True indel: indel (<= 5bp) 954725 955252 18415 17888 CM091754.1 scf7180002754693 98.48 True local misassembly 952494 953638 19865 18721 CM091754.1 scf7180002754693 98.95 True local misassembly 951351 951890 21009 20470 CM091754.1 scf7180002754693 99.26 True fake: scaffold gap size wrong estimation (local) 943805 949815 35129 29078 CM091754.1 scf7180002754693 98.32 True fake: scaffold gap size wrong estimation (local) 938939 943673 40070 35322 CM091754.1 scf7180002754693 99.09 True fake: scaffold gap size wrong estimation (local) 927069 938892 53899 42070 CM091754.1 scf7180002754693 99.35 True fake: scaffold gap size wrong estimation (local) 918267 926923 62524 54047 CM091754.1 scf7180002754693 96.43 True indel: indel (> 5bp) 916657 918200 64168 62627 CM091754.1 scf7180002754693 99.03 True local misassembly 914155 915757 66486 64884 CM091754.1 scf7180002754693 97.88 True local misassembly 912051 913101 68244 67194 CM091754.1 scf7180002754693 99.52 True local misassembly 910188 910971 69219 68436 CM091754.1 scf7180002754693 97.96 True indel: indel (> 5bp) 909120 910061 70298 69357 CM091754.1 scf7180002754693 98.83 True CONTIG scf7180002754693 72355 correct 8673578 8819810 1 145988 CM091760.1 scf7180002754694 99.19 True relocation, scaffold gap is present, inconsistency = -17628 8819827 8845867 163633 189546 CM091760.1 scf7180002754694 98.91 True indel: indel (> 5bp) 8845963 8901569 189715 245198 CM091760.1 scf7180002754694 99.04 True indel: stretch of mismatches 8901570 8907220 245199 250829 CM091760.1 scf7180002754694 98.12 True translocation, scaffold gap is present 13544226 13556274 278105 266061 CM091755.1 scf7180002754694 99.64 True fake: scaffold gap size wrong estimation (extensive) 13532627 13544202 299502 287923 CM091755.1 scf7180002754694 99.27 True fake: not a misassembly (possible transposable element) 8907204 8914122 299523 306420 CM091760.1 scf7180002754694 99.36 True fake: not a misassembly (possible transposable element) 13515323 13532583 323702 306441 CM091755.1 scf7180002754694 99.33 True translocation, scaffold gap is present 8914129 8962551 328703 377070 CM091760.1 scf7180002754694 99.16 True translocation, scaffold gap is present 13494071 13515322 409987 388702 CM091755.1 scf7180002754694 99.39 True translocation, scaffold gap is present 8962764 8979585 446891 463737 CM091760.1 scf7180002754694 99.48 True indel: indel (> 5bp) 8979727 9002861 463887 487018 CM091760.1 scf7180002754694 99.18 True relocation, scaffold gap is present, inconsistency = -40001 9002977 9020866 527135 544987 CM091760.1 scf7180002754694 99.22 True local misassembly 9022348 9031538 544988 554187 CM091760.1 scf7180002754694 99.44 True fake: scaffold gap size wrong estimation (local) 9031421 9038778 555494 562857 CM091760.1 scf7180002754694 99.48 True fake: scaffold gap size wrong estimation (local) 9039056 9057235 564965 583158 CM091760.1 scf7180002754694 99.14 True relocation, scaffold gap is present, inconsistency = -11992 9057149 9057773 595064 595694 CM091760.1 scf7180002754694 98.72 True CONTIG scf7180002754694 595694 misassembled 14640581 14653039 12180 1 CM091755.1 scf7180002754695 97.09 True CONTIG scf7180002754695 13685 correct 2748790 2749477 1675 2362 CM091768.1 scf7180002754696 99.27 True local misassembly 2750418 2756989 3530 9985 CM091768.1 scf7180002754696 96.59 True fake: scaffold gap size wrong estimation (local) 2757116 2761523 14542 18976 CM091768.1 scf7180002754696 98.82 True fake: scaffold gap size wrong estimation (local) 2763036 2763678 20425 21067 CM091768.1 scf7180002754696 99.69 True indel: indel (<= 5bp) 2763956 2765070 21341 22455 CM091768.1 scf7180002754696 99.37 True indel: indel (<= 5bp) 2765071 2765702 22457 23088 CM091768.1 scf7180002754696 99.84 True indel: indel (<= 5bp) 2765703 2766583 23090 23970 CM091768.1 scf7180002754696 99.32 True local misassembly 2768179 2769315 25024 26160 CM091768.1 scf7180002754696 99.12 True indel: indel (> 5bp) 2769340 2770628 26191 27479 CM091768.1 scf7180002754696 99.07 True indel: indel (<= 5bp) 2770629 2771538 27481 28390 CM091768.1 scf7180002754696 99.12 True indel: indel (<= 5bp) 2771539 2772148 28392 29001 CM091768.1 scf7180002754696 99.84 True local misassembly 2772773 2773777 29645 30649 CM091768.1 scf7180002754696 99.4 True fake: scaffold gap size wrong estimation (local) 2774735 2777652 32462 35426 CM091768.1 scf7180002754696 97.64 True indel: indel (> 5bp) 2777682 2778959 35466 36744 CM091768.1 scf7180002754696 99.22 True relocation, scaffold gap is present, inconsistency = -8250 2773960 2774606 39995 40641 CM091768.1 scf7180002754696 98.61 True fake: scaffold gap size wrong estimation (local) 2780591 2781522 41938 42869 CM091768.1 scf7180002754696 99.14 True local misassembly 2782656 2783931 42870 44145 CM091768.1 scf7180002754696 99.61 True indel: indel (<= 5bp) 2784289 2784862 44501 45074 CM091768.1 scf7180002754696 99.3 True local misassembly 2785085 2786177 45075 46167 CM091768.1 scf7180002754696 99.18 True local misassembly 2787982 2789715 47969 49702 CM091768.1 scf7180002754696 99.42 True indel: indel (> 5bp) 2790212 2790842 50181 50811 CM091768.1 scf7180002754696 99.84 True indel: indel (<= 5bp) 2791075 2792295 51040 52260 CM091768.1 scf7180002754696 99.59 True local misassembly 2793409 2794305 53324 54220 CM091768.1 scf7180002754696 99.33 True local misassembly 2795119 2795683 55051 55615 CM091768.1 scf7180002754696 99.47 True indel: indel (<= 5bp) 2795895 2796647 55828 56580 CM091768.1 scf7180002754696 99.87 True local misassembly 2798418 2800045 56738 58365 CM091768.1 scf7180002754696 99.51 True indel: indel (<= 5bp) 2800046 2800956 58367 59277 CM091768.1 scf7180002754696 99.56 True indel: indel (<= 5bp) 2800957 2801734 59279 60056 CM091768.1 scf7180002754696 99.74 True local misassembly 2803233 2805643 60057 62467 CM091768.1 scf7180002754696 99.59 True indel: indel (<= 5bp) 2805645 2806153 62468 62976 CM091768.1 scf7180002754696 99.61 True indel: indel (<= 5bp) 2806578 2807380 63396 64198 CM091768.1 scf7180002754696 99.88 True fake: scaffold gap size wrong estimation (local) 2809113 2810096 65988 66971 CM091768.1 scf7180002754696 99.7 True indel: stretch of mismatches 2810278 2812011 67153 68886 CM091768.1 scf7180002754696 99.42 True local misassembly 2813251 2814802 68887 70438 CM091768.1 scf7180002754696 99.23 True indel: indel (<= 5bp) 2815142 2815730 70777 71365 CM091768.1 scf7180002754696 100.0 True indel: indel (<= 5bp) 2815731 2816239 71367 71875 CM091768.1 scf7180002754696 99.21 True local misassembly 2817449 2819199 73095 74845 CM091768.1 scf7180002754696 99.54 True fake: scaffold gap size wrong estimation (local) 2822690 2823369 79369 80048 CM091768.1 scf7180002754696 99.12 True indel: indel (<= 5bp) 2823370 2823966 80050 80646 CM091768.1 scf7180002754696 99.5 True local misassembly 2824827 2825932 81125 82230 CM091768.1 scf7180002754696 99.19 True indel: indel (> 5bp) 2826152 2826730 82442 83020 CM091768.1 scf7180002754696 99.65 True local misassembly 2827247 2828603 83021 84377 CM091768.1 scf7180002754696 99.85 True fake: scaffold gap size wrong estimation (local) 2829470 2835274 91410 97028 CM091768.1 scf7180002754696 95.96 True CONTIG scf7180002754696 97028 misassembled 995513 1008401 1 12855 CM091753.1 scf7180002754697 99.69 True fake: scaffold gap size wrong estimation (local) 1008663 1018756 13941 23785 CM091753.1 scf7180002754697 97.33 True fake: scaffold gap size wrong estimation (local) 1018879 1049281 24428 54823 CM091753.1 scf7180002754697 99.78 True CONTIG scf7180002754697 54823 correct 910814 922919 11553 1 CM091764.1 scf7180002754698 95.36 True fake: scaffold gap size wrong estimation (local) 907226 910602 19700 16326 CM091764.1 scf7180002754698 99.88 True fake: scaffold gap size wrong estimation (local) 903571 906784 25652 22434 CM091764.1 scf7180002754698 99.78 True fake: scaffold gap size wrong estimation (local) 900734 903175 29552 27111 CM091764.1 scf7180002754698 100.0 True CONTIG scf7180002754698 29815 correct 17252359 17261037 1 8678 CM091751.1 scf7180002754699 99.92 True fake: scaffold gap size wrong estimation (local) 17262411 17279176 9817 26580 CM091751.1 scf7180002754699 99.97 True relocation, scaffold gap is present, inconsistency = 3188380 20470077 20474183 33221 29101 CM091751.1 scf7180002754699 99.93 True fake: not a misassembly (possible transposable element) 17279131 17282813 35347 39028 CM091751.1 scf7180002754699 99.97 True fake: not a misassembly (possible transposable element) 20439431 20470111 69727 39049 CM091751.1 scf7180002754699 99.81 True relocation, scaffold gap is present, inconsistency = 3149893 17282865 17286580 72685 76443 CM091751.1 scf7180002754699 99.49 True relocation, scaffold gap is present, inconsistency = 3101253 20412113 20438095 126767 100723 CM091751.1 scf7180002754699 99.22 True relocation, scaffold gap is present, inconsistency = -14327 20371987 20411959 181254 141248 CM091751.1 scf7180002754699 99.22 True translocation 517336 527831 181255 191681 CM091755.1 scf7180002754699 95.38 True fake: scaffold gap size wrong estimation (local) 528367 590658 196346 258333 CM091755.1 scf7180002754699 99.55 True fake: scaffold gap size wrong estimation (local) 590642 598031 262258 269626 CM091755.1 scf7180002754699 99.67 True CONTIG scf7180002754699 269626 misassembled 188358 203518 15160 1 CM091760.1 scf7180002754700 99.79 True fake: scaffold gap size wrong estimation (extensive) 178270 188394 33523 23554 CM091760.1 scf7180002754700 98.42 True CONTIG scf7180002754700 40792 correct 13386189 13394240 8051 1 CM091758.1 scf7180002754701 99.89 True fake: not a misassembly (possible transposable element) 3527544 3528825 9505 8219 CM091759.1 scf7180002754701 98.45 True fake: not a misassembly (possible transposable element) 13382644 13386309 14966 11299 CM091758.1 scf7180002754701 99.78 True translocation, scaffold gap is present 3516573 3526669 26689 16615 CM091759.1 scf7180002754701 99.31 True fake: scaffold gap size wrong estimation (extensive) 3395224 3516363 157845 36651 CM091759.1 scf7180002754701 99.58 True fake: scaffold gap size wrong estimation (local) 3374084 3394834 178887 158126 CM091759.1 scf7180002754701 99.87 True fake: scaffold gap size wrong estimation (extensive) 3354442 3373918 206175 186680 CM091759.1 scf7180002754701 99.77 True relocation, scaffold gap is present, inconsistency = -18869 3349875 3354304 229730 225182 CM091759.1 scf7180002754701 97.51 True CONTIG scf7180002754701 231951 misassembled 3416746 3423577 1 6833 CM091752.1 scf7180002754702 99.78 True fake: scaffold gap size wrong estimation (local) 3424024 3427621 8003 11630 CM091752.1 scf7180002754702 98.5 True inversion 3432331 3432912 12212 11631 CM091752.1 scf7180002754702 99.32 True inversion 3438856 3446256 12213 19611 CM091752.1 scf7180002754702 99.81 True fake: not a misassembly (possible transposable element) 11806366 11808641 20423 22698 CM091758.1 scf7180002754702 99.78 True fake: not a misassembly (possible transposable element) 3446218 3455781 22699 32231 CM091752.1 scf7180002754702 99.47 True CONTIG scf7180002754702 43429 misassembled 7538073 7547318 1 9121 CM091767.1 scf7180002754703 98.26 True fake: scaffold gap size wrong estimation (local) 7549751 7554191 9700 14140 CM091767.1 scf7180002754703 99.98 True fake: not a misassembly (possible transposable element) 14212978 14216734 14141 17901 CM091756.1 scf7180002754703 99.58 True fake: not a misassembly (possible transposable element) 7554682 7556400 17929 19644 CM091767.1 scf7180002754703 99.83 True fake: scaffold gap size wrong estimation (local) 7560853 7566031 21492 26669 CM091767.1 scf7180002754703 99.92 True translocation, scaffold gap is present 14217036 14219406 28064 30432 CM091756.1 scf7180002754703 99.62 True fake: scaffold gap size wrong estimation (local) 14223870 14228524 32297 36951 CM091756.1 scf7180002754703 99.36 True relocation, scaffold gap is present, inconsistency = -9174 14219371 14221046 36972 38648 CM091756.1 scf7180002754703 97.86 True fake: not a misassembly (possible transposable element) 7566000 7571848 38669 44516 CM091767.1 scf7180002754703 99.95 True fake: not a misassembly (possible transposable element) 14221203 14223942 44780 47520 CM091756.1 scf7180002754703 99.53 True fake: not a misassembly (possible transposable element) 7571813 7578578 47792 54556 CM091767.1 scf7180002754703 99.93 True fake: not a misassembly (possible transposable element) 14229261 14239002 54602 64353 CM091756.1 scf7180002754703 99.53 True relocation, scaffold gap is present, inconsistency = -10046 14239015 14266694 74412 101429 CM091756.1 scf7180002754703 96.69 True fake: scaffold gap size wrong estimation (local) 14266708 14386319 103228 222093 CM091756.1 scf7180002754703 98.78 True fake: scaffold gap size wrong estimation (local) 14386463 14400971 222196 236506 CM091756.1 scf7180002754703 98.09 True fake: scaffold gap size wrong estimation (local) 14401505 14405517 236989 241001 CM091756.1 scf7180002754703 99.48 True fake: scaffold gap size wrong estimation (local) 14405473 14444865 244842 284189 CM091756.1 scf7180002754703 99.69 True relocation, scaffold gap is present, inconsistency = -34324 14445507 14490102 319155 363703 CM091756.1 scf7180002754703 99.67 True CONTIG scf7180002754703 363743 misassembled 7730406 7735001 4605 11 CM091767.1 scf7180002754704 99.89 True translocation 11515007 11518732 4606 8327 CM091765.1 scf7180002754704 99.84 True fake: scaffold gap size wrong estimation (local) 11519316 11520587 8911 10183 CM091765.1 scf7180002754704 99.24 True fake: not a misassembly (possible transposable element) 9127163 9129174 12202 10184 CM091767.1 scf7180002754704 99.11 True fake: not a misassembly (possible transposable element) 11524014 11526117 12223 14326 CM091765.1 scf7180002754704 99.86 True CONTIG scf7180002754704 16430 misassembled 227347 230168 2822 1 CM091753.1 scf7180002754705 100.0 True translocation 497961 499562 2823 4424 CM091764.1 scf7180002754705 99.94 True fake: scaffold gap size wrong estimation (local) 499871 503114 4732 7975 CM091764.1 scf7180002754705 99.91 True fake: scaffold gap size wrong estimation (local) 503132 509902 9233 15884 CM091764.1 scf7180002754705 97.96 True fake: scaffold gap size wrong estimation (local) 509921 516313 19665 26457 CM091764.1 scf7180002754705 95.47 True CONTIG scf7180002754705 26698 misassembled 5413488 5418576 5088 1 CM091768.1 scf7180002754706 99.98 True fake: scaffold gap size wrong estimation (local) 5407091 5411285 9302 5109 CM091768.1 scf7180002754706 99.98 True CONTIG scf7180002754706 12464 correct 3788508 3801317 1 12854 CM091752.1 scf7180002754707 99.22 True fake: scaffold gap size wrong estimation (local) 3802748 3822220 14220 33713 CM091752.1 scf7180002754707 99.36 True fake: scaffold gap size wrong estimation (extensive) 3822526 3832189 41237 50707 CM091752.1 scf7180002754707 97.11 True fake: scaffold gap size wrong estimation (local) 3832483 3836791 56988 61298 CM091752.1 scf7180002754707 99.93 True CONTIG scf7180002754707 61935 correct 11134863 11137935 1 3097 CM091766.1 scf7180002754708 99.16 True fake: scaffold gap size wrong estimation (local) 11138211 11155212 3534 20562 CM091766.1 scf7180002754708 99.96 True fake: scaffold gap size wrong estimation (local) 11156256 11158255 20886 22885 CM091766.1 scf7180002754708 99.95 True indel: indel (<= 5bp) 11158256 11159800 22887 24431 CM091766.1 scf7180002754708 100.0 True indel: indel (<= 5bp) 11159801 11160953 24433 25585 CM091766.1 scf7180002754708 100.0 True indel: indel (<= 5bp) 11160955 11162573 25586 27204 CM091766.1 scf7180002754708 99.94 True indel: indel (<= 5bp) 11162575 11164669 27205 29299 CM091766.1 scf7180002754708 99.81 True fake: scaffold gap size wrong estimation (extensive) 11164681 11194754 37547 67293 CM091766.1 scf7180002754708 98.29 True CONTIG scf7180002754708 67293 correct 8901659 8903520 1862 1 CM091767.1 scf7180002754709 100.0 True indel: indel (<= 5bp) 8900652 8901658 2870 1864 CM091767.1 scf7180002754709 98.01 True local misassembly 8896639 8899825 6057 2871 CM091767.1 scf7180002754709 99.91 True fake: scaffold gap size wrong estimation (local) 8892113 8895662 10014 6424 CM091767.1 scf7180002754709 98.65 True translocation 17224557 17261669 10015 47120 CM091753.1 scf7180002754709 99.68 True fake: scaffold gap size wrong estimation (local) 17262749 17282701 47208 66935 CM091753.1 scf7180002754709 97.99 True fake: scaffold gap size wrong estimation (local) 17282702 17298115 67773 83169 CM091753.1 scf7180002754709 99.1 True CONTIG scf7180002754709 83169 misassembled 7744280 7750357 1 6079 CM091767.1 scf7180002754710 99.92 True fake: scaffold gap size wrong estimation (local) 7751670 7752872 6100 7303 CM091767.1 scf7180002754710 99.92 True local misassembly 7750297 7751391 7324 8418 CM091767.1 scf7180002754710 99.91 True fake: scaffold gap size wrong estimation (local) 7753078 7755807 8588 11317 CM091767.1 scf7180002754710 99.89 True fake: scaffold gap size wrong estimation (local) 7756396 7758967 13913 16484 CM091767.1 scf7180002754710 99.96 True local misassembly 7759316 7760955 16485 18124 CM091767.1 scf7180002754710 98.72 True indel: indel (<= 5bp) 7761053 7762653 18221 19821 CM091767.1 scf7180002754710 100.0 True fake: scaffold gap size wrong estimation (local) 7762544 7773562 22972 33996 CM091767.1 scf7180002754710 99.91 True CONTIG scf7180002754710 33996 correct 10885531 10887498 1976 9 CM091765.1 scf7180002754711 99.79 True fake: scaffold gap size wrong estimation (local) 10879544 10885206 7701 2309 CM091765.1 scf7180002754711 95.07 True fake: scaffold gap size wrong estimation (local) 10877107 10879498 10345 7953 CM091765.1 scf7180002754711 99.96 True fake: scaffold gap size wrong estimation (local) 10872246 10876242 15296 11298 CM091765.1 scf7180002754711 99.87 True CONTIG scf7180002754711 15310 correct 371033 372591 1559 1 CM091763.1 scf7180002754712 100.0 True fake: scaffold gap size wrong estimation (local) 367986 370737 5111 2360 CM091763.1 scf7180002754712 99.93 True fake: scaffold gap size wrong estimation (local) 354122 367800 19448 5774 CM091763.1 scf7180002754712 99.93 True relocation, scaffold gap is present, inconsistency = -12788 351442 352902 34916 33456 CM091763.1 scf7180002754712 95.0 True local misassembly 348732 350937 37122 34917 CM091763.1 scf7180002754712 100.0 True fake: scaffold gap size wrong estimation (local) 294633 348122 92739 39200 CM091763.1 scf7180002754712 99.94 True fake: scaffold gap size wrong estimation (local) 291584 294320 95838 93043 CM091763.1 scf7180002754712 97.85 True fake: scaffold gap size wrong estimation (local) 284077 290956 103649 96773 CM091763.1 scf7180002754712 99.78 True translocation, scaffold gap is present 8972327 8975425 118050 114985 CM091767.1 scf7180002754712 98.56 True translocation 266624 278972 130400 118051 CM091763.1 scf7180002754712 99.94 True translocation, scaffold gap is present 8971418 8972481 134060 132997 CM091767.1 scf7180002754712 100.0 True fake: scaffold gap size wrong estimation (local) 8967295 8968453 135528 134370 CM091767.1 scf7180002754712 99.91 True translocation, scaffold gap is present 263556 265892 147099 144763 CM091763.1 scf7180002754712 100.0 True CONTIG scf7180002754712 147099 misassembled 11329819 11332669 2851 1 CM091765.1 scf7180002754713 99.89 True translocation, scaffold gap is present 16066335 16067629 2872 4166 CM091757.1 scf7180002754713 100.0 True fake: scaffold gap size wrong estimation (local) 16067516 16069189 5204 6878 CM091757.1 scf7180002754713 99.76 True fake: not a misassembly (possible transposable element) 11326469 11328313 8743 6899 CM091765.1 scf7180002754713 99.95 True fake: not a misassembly (possible transposable element) 16074239 16077312 9236 12309 CM091757.1 scf7180002754713 100.0 True translocation, scaffold gap is present 11324054 11326147 14422 12330 CM091765.1 scf7180002754713 99.95 True fake: scaffold gap size wrong estimation (local) 11322948 11323655 16204 15498 CM091765.1 scf7180002754713 99.29 True fake: not a misassembly (possible transposable element) 16078868 16079878 16262 17273 CM091757.1 scf7180002754713 99.9 True fake: not a misassembly (possible transposable element) 11321183 11321984 19032 18237 CM091765.1 scf7180002754713 97.96 True fake: not a misassembly (possible transposable element) 16349066 16350493 20467 19033 CM091757.1 scf7180002754713 99.02 True fake: not a misassembly (possible transposable element) 11319825 11320870 21533 20488 CM091765.1 scf7180002754713 100.0 True translocation, scaffold gap is present 16347297 16349184 24949 23067 CM091757.1 scf7180002754713 97.62 True fake: scaffold gap size wrong estimation (local) 16345131 16346855 26899 25208 CM091757.1 scf7180002754713 97.16 True indel: indel (> 5bp) 16339973 16344995 32078 27050 CM091757.1 scf7180002754713 99.66 True translocation, scaffold gap is present 8818062 8818663 33073 32472 CM091767.1 scf7180002754713 99.17 True translocation, scaffold gap is present 16732556 16736106 35753 39292 CM091752.1 scf7180002754713 96.96 True translocation 16337275 16339706 41719 39293 CM091757.1 scf7180002754713 98.22 True local misassembly 16331883 16332910 42747 41720 CM091757.1 scf7180002754713 99.84 True CONTIG scf7180002754713 43254 misassembled 1007411 1010482 4 3125 CM091764.1 scf7180002754714 98.11 True fake: scaffold gap size wrong estimation (local) 1010681 1018426 3283 11029 CM091764.1 scf7180002754714 99.92 True translocation, scaffold gap is present 9839981 9851202 23043 11844 CM091759.1 scf7180002754714 99.44 True translocation, scaffold gap is present 1018808 1024377 25548 31114 CM091764.1 scf7180002754714 99.91 True fake: scaffold gap size wrong estimation (local) 1024394 1028221 36419 40274 CM091764.1 scf7180002754714 99.71 True translocation, scaffold gap is present 9836223 9839969 44041 40295 CM091759.1 scf7180002754714 99.95 True indel: indel (<= 5bp) 9834760 9836221 45503 44042 CM091759.1 scf7180002754714 99.93 True translocation, scaffold gap is present 1028219 1034560 46885 53236 CM091764.1 scf7180002754714 99.69 True translocation, scaffold gap is present 9832189 9832948 55386 54627 CM091759.1 scf7180002754714 99.74 True local misassembly 9830014 9831406 57564 56172 CM091759.1 scf7180002754714 99.5 True fake: not a misassembly (possible transposable element) 1034817 1038041 57967 61193 CM091764.1 scf7180002754714 99.88 True fake: not a misassembly (possible transposable element) 9823466 9829653 70303 64098 CM091759.1 scf7180002754714 99.53 True translocation, scaffold gap is present 1038006 1044143 70324 76463 CM091764.1 scf7180002754714 99.49 True fake: not a misassembly (possible transposable element) 9821420 9823573 81343 79198 CM091759.1 scf7180002754714 99.35 True fake: not a misassembly (possible transposable element) 1044167 1056526 81364 93730 CM091764.1 scf7180002754714 99.71 True translocation, scaffold gap is present 9781583 9821520 133705 93751 CM091759.1 scf7180002754714 99.59 True translocation, scaffold gap is present 1056765 1058489 144086 145835 CM091764.1 scf7180002754714 98.4 True fake: scaffold gap size wrong estimation (local) 1059112 1063329 148220 152840 CM091764.1 scf7180002754714 95.6 True fake: scaffold gap size wrong estimation (local) 1063435 1064995 152933 154494 CM091764.1 scf7180002754714 99.62 True CONTIG scf7180002754714 174926 misassembled 8333797 8372978 39402 212 CM091765.1 scf7180002754715 99.66 True indel: indel (> 5bp) 8327557 8333749 45664 39466 CM091765.1 scf7180002754715 99.37 True indel: indel (> 5bp) 8323026 8327321 50263 45959 CM091765.1 scf7180002754715 99.09 True relocation, scaffold gap is present, inconsistency = -39911 8299141 8322875 114092 90325 CM091765.1 scf7180002754715 99.32 True CONTIG scf7180002754715 138346 misassembled 5105129 5172229 1 67140 CM091762.1 scf7180002754716 99.59 True relocation, scaffold gap is present, inconsistency = -59678 5172259 5206605 126848 161345 CM091762.1 scf7180002754716 99.18 True relocation, scaffold gap is present, inconsistency = -34594 5206625 5341013 195959 330028 CM091762.1 scf7180002754716 99.39 True fake: scaffold gap size wrong estimation (local) 5341010 5499520 332296 491483 CM091762.1 scf7180002754716 99.52 True fake: scaffold gap size wrong estimation (local) 5499515 5520798 496998 518292 CM091762.1 scf7180002754716 99.68 True fake: scaffold gap size wrong estimation (local) 5520800 5526959 518928 524992 CM091762.1 scf7180002754716 98.07 True fake: scaffold gap size wrong estimation (local) 5527494 5577022 527448 576960 CM091762.1 scf7180002754716 99.29 True relocation, scaffold gap is present, inconsistency = -35276 5553007 5553509 588221 588761 CM091762.1 scf7180002754716 96.28 True fake: scaffold gap size wrong estimation (local) 5577044 5589835 612331 625158 CM091762.1 scf7180002754716 99.59 True CONTIG scf7180002754716 625297 misassembled 18964878 18970314 169 5744 CM091751.1 scf7180002754717 95.94 True indel: indel (> 5bp) 18970354 18979011 5815 14474 CM091751.1 scf7180002754717 98.47 True fake: scaffold gap size wrong estimation (local) 18979235 18982123 14513 17457 CM091751.1 scf7180002754717 97.66 True fake: scaffold gap size wrong estimation (local) 18983258 18988956 19750 25487 CM091751.1 scf7180002754717 98.69 True indel: indel (> 5bp) 18989050 18997345 25606 34031 CM091751.1 scf7180002754717 97.41 True fake: scaffold gap size wrong estimation (local) 18998182 18999754 34334 35906 CM091751.1 scf7180002754717 99.36 True fake: scaffold gap size wrong estimation (local) 19000455 19003273 36715 39548 CM091751.1 scf7180002754717 98.65 True fake: scaffold gap size wrong estimation (local) 19005664 19009326 39994 43683 CM091751.1 scf7180002754717 98.62 True fake: scaffold gap size wrong estimation (local) 19009682 19020908 47718 58853 CM091751.1 scf7180002754717 97.52 True translocation, scaffold gap is present 2639194 2639725 62073 61542 CM091761.1 scf7180002754717 99.81 True translocation, scaffold gap is present 19020889 19021522 66319 66954 CM091751.1 scf7180002754717 98.9 True fake: scaffold gap size wrong estimation (local) 19021682 19024884 67093 70300 CM091751.1 scf7180002754717 99.0 True indel: indel (> 5bp) 19025087 19026056 70517 71489 CM091751.1 scf7180002754717 98.36 True CONTIG scf7180002754717 71499 misassembled 20360821 20371936 10889 31 CM091751.1 scf7180002754718 96.65 True fake: scaffold gap size wrong estimation (local) 20359689 20360351 13437 12775 CM091751.1 scf7180002754718 99.85 True indel: indel (<= 5bp) 20359093 20359688 14034 13439 CM091751.1 scf7180002754718 99.83 True indel: indel (<= 5bp) 20358509 20359092 14619 14036 CM091751.1 scf7180002754718 99.32 True indel: indel (<= 5bp) 20357491 20358508 15638 14621 CM091751.1 scf7180002754718 99.51 True local misassembly 20352975 20356623 20261 16606 CM091751.1 scf7180002754718 98.88 True fake: scaffold gap size wrong estimation (local) 20314704 20352536 62156 24378 CM091751.1 scf7180002754718 98.59 True relocation, scaffold gap is present, inconsistency = -23947 20312229 20314206 88578 86601 CM091751.1 scf7180002754718 99.34 True indel: stretch of mismatches 20310950 20311765 89857 89042 CM091751.1 scf7180002754718 99.39 True indel: indel (> 5bp) 20309035 20310476 91782 90341 CM091751.1 scf7180002754718 99.72 True indel: indel (<= 5bp) 20308403 20309034 92415 91784 CM091751.1 scf7180002754718 99.53 True relocation, inconsistency = 10773 20285814 20296309 103926 93736 CM091751.1 scf7180002754718 95.67 True local misassembly 20290765 20291279 104472 103948 CM091751.1 scf7180002754718 99.21 True fake: scaffold gap size wrong estimation (local) 20264977 20285718 130455 109539 CM091751.1 scf7180002754718 98.09 True fake: scaffold gap size wrong estimation (local) 20261893 20264784 138438 135534 CM091751.1 scf7180002754718 98.8 True fake: scaffold gap size wrong estimation (local) 20260888 20261559 141107 140436 CM091751.1 scf7180002754718 99.85 True indel: indel (<= 5bp) 20259732 20260884 142260 141108 CM091751.1 scf7180002754718 99.31 True indel: indel (<= 5bp) 20257909 20259337 144078 142650 CM091751.1 scf7180002754718 98.39 True fake: scaffold gap size wrong estimation (local) 20256123 20257162 145689 144650 CM091751.1 scf7180002754718 99.33 True indel: indel (<= 5bp) 20254496 20256079 147317 145734 CM091751.1 scf7180002754718 99.81 True indel: indel (<= 5bp) 20253956 20254492 147854 147318 CM091751.1 scf7180002754718 98.88 True local misassembly 20251949 20253089 149818 148678 CM091751.1 scf7180002754718 99.47 True fake: scaffold gap size wrong estimation (local) 20243570 20251882 163142 154815 CM091751.1 scf7180002754718 98.22 True fake: scaffold gap size wrong estimation (local) 20239233 20243183 167603 163654 CM091751.1 scf7180002754718 99.32 True fake: scaffold gap size wrong estimation (local) 20229668 20239047 180324 170949 CM091751.1 scf7180002754718 99.5 True fake: scaffold gap size wrong estimation (extensive) 20228623 20229347 190120 189396 CM091751.1 scf7180002754718 100.0 True indel: indel (<= 5bp) 20226193 20228620 192548 190121 CM091751.1 scf7180002754718 99.96 True indel: indel (> 5bp) 20224742 20226164 193971 192549 CM091751.1 scf7180002754718 98.38 True local misassembly 20223231 20223818 194966 194379 CM091751.1 scf7180002754718 99.66 True fake: scaffold gap size wrong estimation (local) 20214811 20222582 204815 196965 CM091751.1 scf7180002754718 98.69 True CONTIG scf7180002754718 205219 misassembled 14034841 14035559 1 722 CM091758.1 scf7180002754719 99.45 True local misassembly 14036229 14039225 1089 4139 CM091758.1 scf7180002754719 97.87 True indel: stretch of mismatches 14039226 14039850 4140 4758 CM091758.1 scf7180002754719 96.78 True fake: scaffold gap size wrong estimation (local) 14040353 14040966 5193 5806 CM091758.1 scf7180002754719 99.51 True indel: indel (<= 5bp) 14040967 14042705 5808 7546 CM091758.1 scf7180002754719 99.65 True indel: indel (> 5bp) 14042706 14043736 7554 8584 CM091758.1 scf7180002754719 99.61 True local misassembly 14047448 14050848 8585 11985 CM091758.1 scf7180002754719 99.26 True indel: indel (<= 5bp) 14050852 14052173 11986 13307 CM091758.1 scf7180002754719 99.7 True indel: indel (> 5bp) 14052180 14052789 13308 13917 CM091758.1 scf7180002754719 99.34 True local misassembly 14053222 14054778 14209 15765 CM091758.1 scf7180002754719 99.36 True indel: indel (<= 5bp) 14054780 14057074 15766 18060 CM091758.1 scf7180002754719 99.74 True local misassembly 14057678 14058341 18665 19328 CM091758.1 scf7180002754719 99.7 True indel: indel (<= 5bp) 14058363 14059327 19352 20316 CM091758.1 scf7180002754719 99.38 True indel: indel (<= 5bp) 14059397 14083644 20390 44683 CM091758.1 scf7180002754719 99.18 True relocation, scaffold gap is present, inconsistency = -30702 14083743 14093341 75484 85097 CM091758.1 scf7180002754719 98.73 True translocation 3203860 3224983 85098 106197 CM091759.1 scf7180002754719 99.78 True CONTIG scf7180002754719 106211 misassembled 1165937 1170987 1 5051 CM091753.1 scf7180002754720 99.94 True fake: scaffold gap size wrong estimation (local) 1172479 1188194 6535 22256 CM091753.1 scf7180002754720 99.76 True fake: scaffold gap size wrong estimation (local) 1189320 1199081 22808 32594 CM091753.1 scf7180002754720 99.62 True fake: scaffold gap size wrong estimation (local) 1199762 1208193 32804 41251 CM091753.1 scf7180002754720 99.38 True fake: scaffold gap size wrong estimation (local) 1208822 1212406 41900 45485 CM091753.1 scf7180002754720 99.86 True translocation 2596907 2636747 45486 85463 CM091757.1 scf7180002754720 99.36 True fake: scaffold gap size wrong estimation (local) 2636885 2704592 85601 153351 CM091757.1 scf7180002754720 99.31 True local misassembly 2704903 2727304 153804 176193 CM091757.1 scf7180002754720 98.55 True CONTIG scf7180002754720 176222 misassembled 10375753 10394633 18904 20 CM091766.1 scf7180002754721 99.73 True fake: scaffold gap size wrong estimation (local) 10373169 10374879 21551 19841 CM091766.1 scf7180002754721 99.88 True indel: indel (<= 5bp) 10371792 10373165 22925 21552 CM091766.1 scf7180002754721 98.54 True local misassembly 10370530 10371486 23882 22926 CM091766.1 scf7180002754721 99.37 True indel: indel (<= 5bp) 10369853 10370528 24558 23883 CM091766.1 scf7180002754721 99.85 True fake: scaffold gap size wrong estimation (local) 10356703 10369779 39393 26282 CM091766.1 scf7180002754721 98.14 True fake: scaffold gap size wrong estimation (local) 10353204 10356626 46936 43526 CM091766.1 scf7180002754721 99.36 True indel: indel (> 5bp) 10235712 10353180 164603 46967 CM091766.1 scf7180002754721 99.52 True translocation, scaffold gap is present 14725793 14748942 190710 167412 CM091756.1 scf7180002754721 98.65 True translocation, scaffold gap is present 10228544 10235893 216540 209128 CM091766.1 scf7180002754721 99.1 True translocation, scaffold gap is present 14725044 14725672 220779 220151 CM091756.1 scf7180002754721 99.21 True fake: scaffold gap size wrong estimation (local) 14711698 14725045 234760 221422 CM091756.1 scf7180002754721 99.4 True translocation, scaffold gap is present 10224087 10228245 240307 236001 CM091766.1 scf7180002754721 97.26 True fake: scaffold gap size wrong estimation (local) 10206929 10224091 259665 241945 CM091766.1 scf7180002754721 96.66 True translocation, scaffold gap is present 14696127 14711927 276781 260968 CM091756.1 scf7180002754721 99.14 True fake: not a misassembly (possible transposable element) 10202088 10206915 285202 280376 CM091766.1 scf7180002754721 99.5 True fake: not a misassembly (possible transposable element) 14680202 14693684 299298 285832 CM091756.1 scf7180002754721 99.49 True translocation, scaffold gap is present 10194978 10200309 304654 299323 CM091766.1 scf7180002754721 99.55 True translocation, scaffold gap is present 14693801 14696236 307113 304675 CM091756.1 scf7180002754721 98.53 True translocation, scaffold gap is present 10200503 10202114 308745 307136 CM091766.1 scf7180002754721 99.63 True fake: scaffold gap size wrong estimation (local) 10181777 10194964 324999 311808 CM091766.1 scf7180002754721 99.77 True translocation, scaffold gap is present 14676905 14680317 332759 329362 CM091756.1 scf7180002754721 98.92 True fake: scaffold gap size wrong estimation (local) 14658229 14676989 352826 334023 CM091756.1 scf7180002754721 99.12 True translocation, scaffold gap is present 10163289 10181746 371422 352847 CM091766.1 scf7180002754721 99.08 True translocation, scaffold gap is present 14647730 14658247 383353 372860 CM091756.1 scf7180002754721 99.31 True translocation, scaffold gap is present 10148636 10163355 398075 383374 CM091766.1 scf7180002754721 99.37 True translocation, scaffold gap is present 14620241 14647848 433595 406227 CM091756.1 scf7180002754721 98.76 True translocation, scaffold gap is present 10126129 10148746 460203 437567 CM091766.1 scf7180002754721 99.64 True translocation, scaffold gap is present 14603807 14620206 489592 473192 CM091756.1 scf7180002754721 99.84 True fake: scaffold gap size wrong estimation (local) 14591359 14602456 501619 490783 CM091756.1 scf7180002754721 96.9 True CONTIG scf7180002754721 503022 misassembled 294133 304468 17 11071 CM091752.1 scf7180002754722 96.63 True local misassembly 304641 314503 11113 20670 CM091752.1 scf7180002754722 95.75 True local misassembly 315050 320492 21102 26544 CM091752.1 scf7180002754722 98.57 True fake: scaffold gap size wrong estimation (extensive) 320785 322760 34186 36124 CM091752.1 scf7180002754722 96.12 True fake: scaffold gap size wrong estimation (local) 325325 328291 36939 39903 CM091752.1 scf7180002754722 99.12 True CONTIG scf7180002754722 39903 correct 13985677 13987580 741 2651 CM091758.1 scf7180002754723 99.01 True inversion, scaffold gap is present 13984696 13985354 3325 2674 CM091758.1 scf7180002754723 96.09 True local misassembly 13976714 13978848 5460 3326 CM091758.1 scf7180002754723 99.25 True fake: scaffold gap size wrong estimation (local) 13962220 13976534 21097 6916 CM091758.1 scf7180002754723 98.15 True fake: scaffold gap size wrong estimation (extensive) 13952295 13962125 39596 29771 CM091758.1 scf7180002754723 99.11 True fake: scaffold gap size wrong estimation (local) 13934664 13952244 57790 40192 CM091758.1 scf7180002754723 99.25 True fake: scaffold gap size wrong estimation (local) 13908690 13934358 83598 58097 CM091758.1 scf7180002754723 98.63 True indel: indel (> 5bp) 13895663 13908613 96609 83661 CM091758.1 scf7180002754723 98.92 True fake: scaffold gap size wrong estimation (local) 13890044 13895369 104774 99442 CM091758.1 scf7180002754723 99.4 True fake: scaffold gap size wrong estimation (local) 13888916 13889473 111409 110852 CM091758.1 scf7180002754723 98.75 True indel: indel (> 5bp) 13888388 13888915 111944 111417 CM091758.1 scf7180002754723 99.62 True indel: indel (> 5bp) 13887226 13888287 113126 112065 CM091758.1 scf7180002754723 99.91 True fake: scaffold gap size wrong estimation (local) 13885592 13886316 114785 114061 CM091758.1 scf7180002754723 99.86 True indel: indel (<= 5bp) 13884516 13885583 115865 114798 CM091758.1 scf7180002754723 97.94 True local misassembly 13869178 13883874 130557 115866 CM091758.1 scf7180002754723 99.48 True relocation, scaffold gap is present, inconsistency = -12630 13864443 13869189 147924 143176 CM091758.1 scf7180002754723 99.73 True CONTIG scf7180002754723 147926 misassembled 1092363 1110452 1 18116 CM091761.1 scf7180002754724 99.81 True fake: not a misassembly (possible transposable element) 8978826 8980197 19508 18137 CM091766.1 scf7180002754724 99.85 True fake: not a misassembly (possible transposable element) 1110535 1112570 19529 21566 CM091761.1 scf7180002754724 99.85 True CONTIG scf7180002754724 22579 correct 3740395 3765314 8 24192 CM091761.1 scf7180002754725 96.21 True indel: indel (> 5bp) 3765400 3773648 24247 32485 CM091761.1 scf7180002754725 99.29 True relocation, scaffold gap is present, inconsistency = -22304 3773685 3774914 54826 56055 CM091761.1 scf7180002754725 99.84 True local misassembly 3775340 3776321 56056 57037 CM091761.1 scf7180002754725 99.29 True indel: indel (<= 5bp) 3776527 3778434 57241 59148 CM091761.1 scf7180002754725 99.16 True local misassembly 3779864 3780373 59571 60080 CM091761.1 scf7180002754725 95.69 True indel: indel (<= 5bp) 3780509 3781701 60221 61413 CM091761.1 scf7180002754725 98.58 True local misassembly 3782192 3783394 61921 63123 CM091761.1 scf7180002754725 99.42 True indel: indel (> 5bp) 3783420 3785496 63187 65263 CM091761.1 scf7180002754725 99.18 True indel: indel (<= 5bp) 3785498 3787772 65264 67538 CM091761.1 scf7180002754725 99.56 True local misassembly 3787872 3788419 67539 68086 CM091761.1 scf7180002754725 99.45 True local misassembly 3789001 3790466 68655 70120 CM091761.1 scf7180002754725 99.39 True indel: indel (<= 5bp) 3790468 3792831 70121 72484 CM091761.1 scf7180002754725 99.49 True local misassembly 3793466 3794063 73144 73741 CM091761.1 scf7180002754725 99.83 True indel: stretch of mismatches 3794236 3795110 73914 74788 CM091761.1 scf7180002754725 99.77 True indel: indel (> 5bp) 3795324 3795984 74990 75650 CM091761.1 scf7180002754725 99.55 True indel: indel (> 5bp) 3796085 3796655 75761 76331 CM091761.1 scf7180002754725 100.0 True relocation, scaffold gap is present, inconsistency = -18297 3799673 3825432 97646 122900 CM091761.1 scf7180002754725 97.18 True relocation, scaffold gap is present, inconsistency = -25261 3825440 3833777 148169 156207 CM091761.1 scf7180002754725 95.5 True indel: indel (> 5bp) 3834148 3834965 156515 157332 CM091761.1 scf7180002754725 99.02 True indel: indel (<= 5bp) 3835054 3839232 157422 161600 CM091761.1 scf7180002754725 99.64 True local misassembly 3840352 3841056 161724 162428 CM091761.1 scf7180002754725 99.57 True indel: indel (<= 5bp) 3841186 3842296 162560 163670 CM091761.1 scf7180002754725 99.64 True local misassembly 3843052 3844206 164429 165583 CM091761.1 scf7180002754725 99.65 True fake: scaffold gap size wrong estimation (extensive) 3844451 3869372 174168 199094 CM091761.1 scf7180002754725 99.03 True CONTIG scf7180002754725 199100 misassembled 11201805 11207742 8 5947 CM091766.1 scf7180002754726 99.6 True fake: scaffold gap size wrong estimation (local) 11208364 11210124 6352 8114 CM091766.1 scf7180002754726 99.83 True fake: scaffold gap size wrong estimation (local) 11211136 11216643 9142 14653 CM091766.1 scf7180002754726 99.85 True fake: scaffold gap size wrong estimation (local) 11216932 11246221 18928 48584 CM091766.1 scf7180002754726 98.25 True CONTIG scf7180002754726 48584 correct CONTIG scf7180002754727 108768 unaligned 1146201 1360021 46 213426 CM091761.1 scf7180002754728 99.54 True relocation, scaffold gap is present, inconsistency = -130780 1360118 1374728 344303 358821 CM091761.1 scf7180002754728 99.24 True relocation, scaffold gap is present, inconsistency = -14100 1374655 1401012 372848 399272 CM091761.1 scf7180002754728 99.58 True CONTIG scf7180002754728 399272 misassembled 2377775 2393339 15868 221 CM091754.1 scf7180002754729 98.39 True fake: scaffold gap size wrong estimation (extensive) 2371727 2377452 31777 26053 CM091754.1 scf7180002754729 99.02 True fake: scaffold gap size wrong estimation (local) 2364150 2371299 43979 36821 CM091754.1 scf7180002754729 99.13 True fake: scaffold gap size wrong estimation (local) 2352819 2363736 56490 45650 CM091754.1 scf7180002754729 98.03 True indel: indel (> 5bp) 2311845 2352790 96381 56552 CM091754.1 scf7180002754729 96.14 True indel: indel (> 5bp) 2292179 2311816 116026 96403 CM091754.1 scf7180002754729 98.81 True relocation, scaffold gap is present, inconsistency = -47673 2273260 2291851 181918 164027 CM091754.1 scf7180002754729 95.45 True indel: indel (> 5bp) 2260257 2273201 195056 181987 CM091754.1 scf7180002754729 97.3 True relocation, scaffold gap is present, inconsistency = -24802 2232202 2260246 247953 219869 CM091754.1 scf7180002754729 98.93 True relocation, scaffold gap is present, inconsistency = -14547 2225187 2231891 269524 262811 CM091754.1 scf7180002754729 98.87 True fake: scaffold gap size wrong estimation (local) 2207755 2224595 286650 269883 CM091754.1 scf7180002754729 99.19 True indel: indel (> 5bp) 2194082 2207704 300256 286679 CM091754.1 scf7180002754729 99.21 True relocation, scaffold gap is present, inconsistency = -29070 2189274 2193940 334121 329468 CM091754.1 scf7180002754729 99.44 True fake: scaffold gap size wrong estimation (local) 2156245 2188598 366556 334478 CM091754.1 scf7180002754729 98.41 True relocation, scaffold gap is present, inconsistency = -17626 2148685 2156252 391746 384175 CM091754.1 scf7180002754729 99.84 True CONTIG scf7180002754729 395866 misassembled 10298490 10301303 1 2814 CM091765.1 scf7180002754730 99.86 True indel: indel (<= 5bp) 10301305 10302806 2815 4316 CM091765.1 scf7180002754730 99.93 True local misassembly 10303350 10305155 4317 6122 CM091765.1 scf7180002754730 99.34 True local misassembly 10308451 10327002 6123 24675 CM091765.1 scf7180002754730 99.9 True fake: scaffold gap size wrong estimation (extensive) 10327031 10341230 32381 46582 CM091765.1 scf7180002754730 99.92 True CONTIG scf7180002754730 46997 correct 173326 179403 6045 24 CM091752.1 scf7180002754731 96.06 True local misassembly 169201 171863 8704 6046 CM091752.1 scf7180002754731 99.41 True fake: not a misassembly (possible transposable element) 140772 143088 8755 11080 CM091752.1 scf7180002754731 99.1 True fake: not a misassembly (possible transposable element) 167267 168853 12666 11081 CM091752.1 scf7180002754731 95.46 True fake: scaffold gap size wrong estimation (local) 164055 165938 15243 13360 CM091752.1 scf7180002754731 99.26 True indel: indel (<= 5bp) 163340 164054 15959 15245 CM091752.1 scf7180002754731 96.78 True local misassembly 161141 162288 17107 15960 CM091752.1 scf7180002754731 99.48 True indel: indel (<= 5bp) 159678 160907 18573 17344 CM091752.1 scf7180002754731 99.11 True indel: indel (> 5bp) 157682 159304 20576 18954 CM091752.1 scf7180002754731 99.63 True fake: scaffold gap size wrong estimation (local) 157105 157632 25751 25224 CM091752.1 scf7180002754731 95.64 True local misassembly 155368 156231 27218 26355 CM091752.1 scf7180002754731 98.73 True fake: scaffold gap size wrong estimation (local) 143500 154514 40075 28826 CM091752.1 scf7180002754731 97.08 True CONTIG scf7180002754731 40079 correct 5116273 5119103 1 2831 CM091768.1 scf7180002754732 99.96 True fake: scaffold gap size wrong estimation (local) 5119478 5120270 3202 3994 CM091768.1 scf7180002754732 100.0 True fake: scaffold gap size wrong estimation (local) 5120598 5129761 4221 13514 CM091768.1 scf7180002754732 98.81 True fake: scaffold gap size wrong estimation (local) 5130516 5134351 15986 19821 CM091768.1 scf7180002754732 99.95 True fake: scaffold gap size wrong estimation (local) 5134459 5140553 19929 26023 CM091768.1 scf7180002754732 100.0 True fake: scaffold gap size wrong estimation (local) 5144347 5146888 27177 29718 CM091768.1 scf7180002754732 100.0 True local misassembly 5142386 5143537 29744 30895 CM091768.1 scf7180002754732 100.0 True fake: scaffold gap size wrong estimation (local) 5146907 5157032 33667 43548 CM091768.1 scf7180002754732 97.52 True fake: scaffold gap size wrong estimation (extensive) 5158882 5163702 52506 57327 CM091768.1 scf7180002754732 99.98 True fake: scaffold gap size wrong estimation (local) 5163844 5164694 62058 62908 CM091768.1 scf7180002754732 99.53 True fake: scaffold gap size wrong estimation (local) 5165021 5177767 63083 75861 CM091768.1 scf7180002754732 99.88 True fake: scaffold gap size wrong estimation (local) 5178258 5179852 78890 80484 CM091768.1 scf7180002754732 99.62 True fake: scaffold gap size wrong estimation (local) 5180453 5181876 80615 82038 CM091768.1 scf7180002754732 99.51 True CONTIG scf7180002754732 82038 correct 6007050 6033769 26722 1 CM091768.1 scf7180002754733 99.99 True relocation, scaffold gap is present, inconsistency = -13735 5924405 6007167 123154 40340 CM091768.1 scf7180002754733 99.25 True CONTIG scf7180002754733 123154 misassembled 5546413 5551086 1 4581 CM091754.1 scf7180002754734 97.99 True fake: scaffold gap size wrong estimation (local) 5551190 5552662 4668 6140 CM091754.1 scf7180002754734 99.93 True fake: scaffold gap size wrong estimation (local) 5553728 5555467 7747 9486 CM091754.1 scf7180002754734 100.0 True CONTIG scf7180002754734 9486 correct 1941400 1945143 3731 1 CM091755.1 scf7180002754735 99.44 True fake: scaffold gap size wrong estimation (local) 1919926 1936964 20795 3752 CM091755.1 scf7180002754735 99.72 True relocation, scaffold gap is present, inconsistency = -22869 1937500 1939929 26090 23661 CM091755.1 scf7180002754735 99.96 True local misassembly 1940801 1941372 27263 26692 CM091755.1 scf7180002754735 99.83 True relocation, scaffold gap is present, inconsistency = 18693 1919013 1920027 30359 29344 CM091755.1 scf7180002754735 99.9 True fake: scaffold gap size wrong estimation (local) 1906908 1918443 41949 30828 CM091755.1 scf7180002754735 95.8 True fake: scaffold gap size wrong estimation (local) 1905274 1906621 48252 46905 CM091755.1 scf7180002754735 100.0 True indel: indel (> 5bp) 1901888 1905243 51608 48253 CM091755.1 scf7180002754735 99.73 True indel: indel (<= 5bp) 1900570 1901882 52921 51609 CM091755.1 scf7180002754735 99.7 True indel: indel (> 5bp) 1896385 1900569 57117 52933 CM091755.1 scf7180002754735 99.62 True fake: scaffold gap size wrong estimation (local) 1876545 1895687 76412 57236 CM091755.1 scf7180002754735 99.52 True local misassembly 1877887 1878508 77515 76909 CM091755.1 scf7180002754735 95.82 True fake: scaffold gap size wrong estimation (local) 1873469 1875907 80034 77596 CM091755.1 scf7180002754735 99.63 True fake: scaffold gap size wrong estimation (local) 1862837 1873510 92277 81581 CM091755.1 scf7180002754735 99.34 True fake: scaffold gap size wrong estimation (local) 1860062 1862314 94840 92592 CM091755.1 scf7180002754735 99.37 True local misassembly 1856581 1859147 97407 94841 CM091755.1 scf7180002754735 99.92 True fake: scaffold gap size wrong estimation (local) 1855378 1856095 98638 97921 CM091755.1 scf7180002754735 99.86 True fake: scaffold gap size wrong estimation (local) 1854135 1855116 100097 99116 CM091755.1 scf7180002754735 99.59 True fake: scaffold gap size wrong estimation (local) 1852683 1853536 101390 100537 CM091755.1 scf7180002754735 99.53 True fake: scaffold gap size wrong estimation (local) 1848666 1852173 105442 101941 CM091755.1 scf7180002754735 99.43 True fake: scaffold gap size wrong estimation (local) 1846514 1848256 107594 105852 CM091755.1 scf7180002754735 98.62 True local misassembly 1844446 1845874 109023 107595 CM091755.1 scf7180002754735 99.65 True fake: scaffold gap size wrong estimation (local) 1843659 1844445 110177 109391 CM091755.1 scf7180002754735 99.87 True fake: scaffold gap size wrong estimation (local) 1842389 1843042 111467 110814 CM091755.1 scf7180002754735 99.69 True fake: scaffold gap size wrong estimation (local) 1835577 1842112 118252 111745 CM091755.1 scf7180002754735 98.64 True inversion, scaffold gap is present 1830827 1834606 118339 122118 CM091755.1 scf7180002754735 99.68 True CONTIG scf7180002754735 126324 misassembled 9255023 9274324 1 19237 CM091765.1 scf7180002754736 99.08 True fake: not a misassembly (possible transposable element) 19533220 19534334 19258 20373 CM091751.1 scf7180002754736 99.11 True fake: not a misassembly (possible transposable element) 9274220 9280642 20402 26829 CM091765.1 scf7180002754736 99.56 True translocation, scaffold gap is present 19534495 19536312 26853 28679 CM091751.1 scf7180002754736 99.01 True translocation, scaffold gap is present 9280663 9305888 34681 59921 CM091765.1 scf7180002754736 99.76 True fake: scaffold gap size wrong estimation (local) 9306285 9406218 60938 160775 CM091765.1 scf7180002754736 99.38 True indel: stretch of mismatches 9406279 9433991 160836 188552 CM091765.1 scf7180002754736 99.76 True fake: scaffold gap size wrong estimation (extensive) 9434165 9462904 197240 226069 CM091765.1 scf7180002754736 99.19 True relocation, scaffold gap is present, inconsistency = -16714 9462914 9473160 242793 253069 CM091765.1 scf7180002754736 99.29 True local misassembly 9475207 9476061 253925 254779 CM091765.1 scf7180002754736 99.06 True CONTIG scf7180002754736 255325 misassembled 553695 555416 483 2204 CM091764.1 scf7180002754737 99.48 True fake: scaffold gap size wrong estimation (local) 556753 557499 3667 4413 CM091764.1 scf7180002754737 100.0 True indel: indel (<= 5bp) 557500 558344 4415 5259 CM091764.1 scf7180002754737 99.41 True fake: scaffold gap size wrong estimation (local) 558461 559753 5631 6923 CM091764.1 scf7180002754737 99.92 True translocation 1106969 1110769 10724 6924 CM091755.1 scf7180002754737 99.87 True fake: scaffold gap size wrong estimation (local) 1065372 1106997 57656 15943 CM091755.1 scf7180002754737 99.77 True CONTIG scf7180002754737 57656 misassembled 14752657 14784675 1 30881 CM091755.1 scf7180002754738 95.27 True fake: scaffold gap size wrong estimation (local) 14784893 14786087 31082 32265 CM091755.1 scf7180002754738 96.23 True fake: scaffold gap size wrong estimation (local) 14786336 14788159 32510 34372 CM091755.1 scf7180002754738 98.7 True fake: scaffold gap size wrong estimation (local) 14789388 14797586 34404 42603 CM091755.1 scf7180002754738 99.11 True fake: scaffold gap size wrong estimation (extensive) 14798170 14806298 50709 58851 CM091755.1 scf7180002754738 99.08 True fake: scaffold gap size wrong estimation (local) 14806743 14816943 59121 69217 CM091755.1 scf7180002754738 97.44 True fake: scaffold gap size wrong estimation (local) 14817333 14820818 69313 72789 CM091755.1 scf7180002754738 99.28 True fake: scaffold gap size wrong estimation (local) 14821456 14831222 73307 83085 CM091755.1 scf7180002754738 99.62 True translocation, scaffold gap is present 3759550 3771314 94719 83106 CM091764.1 scf7180002754738 98.48 True local misassembly 3719590 3758755 134719 95542 CM091764.1 scf7180002754738 99.7 True indel: indel (> 5bp) 3684431 3719543 169900 134793 CM091764.1 scf7180002754738 99.62 True translocation, scaffold gap is present 14831275 14837319 169924 175974 CM091755.1 scf7180002754738 99.6 True fake: scaffold gap size wrong estimation (local) 14837748 14850639 176434 189324 CM091755.1 scf7180002754738 99.32 True translocation, scaffold gap is present 3679501 3684387 194235 189345 CM091764.1 scf7180002754738 99.33 True local misassembly 3667688 3675808 202357 194236 CM091764.1 scf7180002754738 99.75 True translocation, scaffold gap is present 14850658 14859057 206274 214675 CM091755.1 scf7180002754738 99.52 True fake: scaffold gap size wrong estimation (local) 14858856 14906993 217930 265804 CM091755.1 scf7180002754738 98.88 True CONTIG scf7180002754738 265804 misassembled 1240618 1260415 19709 119 CM091754.1 scf7180002754739 98.35 True relocation, scaffold gap is present, inconsistency = -16841 1211729 1240721 65417 36447 CM091754.1 scf7180002754739 99.35 True relocation, scaffold gap is present, inconsistency = -19158 1181778 1209768 114540 86536 CM091754.1 scf7180002754739 99.6 True relocation, scaffold gap is present, inconsistency = -27919 1156050 1175664 168218 148573 CM091754.1 scf7180002754739 99.1 True CONTIG scf7180002754739 187319 misassembled 11460576 11463372 2811 1 CM091761.1 scf7180002754740 99.04 True fake: scaffold gap size wrong estimation (local) 11423708 11459732 38248 2865 CM091761.1 scf7180002754740 97.3 True fake: scaffold gap size wrong estimation (local) 11393683 11423691 71215 41194 CM091761.1 scf7180002754740 99.93 True relocation, scaffold gap is present, inconsistency = -12386 11389390 11393473 87923 83811 CM091761.1 scf7180002754740 98.36 True fake: scaffold gap size wrong estimation (local) 11386880 11387790 90084 89174 CM091761.1 scf7180002754740 100.0 True fake: scaffold gap size wrong estimation (local) 11386088 11386676 90881 90293 CM091761.1 scf7180002754740 99.83 True indel: indel (<= 5bp) 11385557 11386086 91411 90882 CM091761.1 scf7180002754740 100.0 True indel: indel (<= 5bp) 11383762 11385556 93207 91413 CM091761.1 scf7180002754740 98.89 True local misassembly 11382555 11383197 94023 93381 CM091761.1 scf7180002754740 100.0 True indel: indel (> 5bp) 11381702 11382554 94882 94030 CM091761.1 scf7180002754740 100.0 True indel: indel (> 5bp) 11380643 11381445 95935 95133 CM091761.1 scf7180002754740 99.75 True CONTIG scf7180002754740 95935 misassembled 4859215 4909180 49932 1 CM091751.1 scf7180002754741 98.71 True indel: indel (> 5bp) 4843012 4859115 66073 49986 CM091751.1 scf7180002754741 98.74 True local misassembly 4820962 4842636 88326 66626 CM091751.1 scf7180002754741 98.9 True fake: scaffold gap size wrong estimation (local) 4819919 4820874 94020 93065 CM091751.1 scf7180002754741 99.9 True indel: indel (<= 5bp) 4818557 4819634 95383 94306 CM091751.1 scf7180002754741 99.63 True indel: indel (> 5bp) 4817481 4818525 96471 95427 CM091751.1 scf7180002754741 98.66 True indel: indel (> 5bp) 4816908 4817473 97037 96472 CM091751.1 scf7180002754741 95.23 True local misassembly 4813597 4815293 99308 97612 CM091751.1 scf7180002754741 99.23 True indel: indel (<= 5bp) 4813072 4813596 99834 99310 CM091751.1 scf7180002754741 100.0 True fake: scaffold gap size wrong estimation (local) 4786492 4811385 130706 105785 CM091751.1 scf7180002754741 99.01 True relocation, inconsistency = 13372774 18184255 18185796 130802 132343 CM091751.1 scf7180002754741 99.61 True relocation, scaffold gap is present, inconsistency = -12094 18175097 18176112 133738 134754 CM091751.1 scf7180002754741 99.21 True local misassembly 18176181 18184176 134954 142943 CM091751.1 scf7180002754741 98.82 True relocation, scaffold gap is present, inconsistency = 13381336 4778281 4786279 159505 151509 CM091751.1 scf7180002754741 99.25 True relocation, scaffold gap is present, inconsistency = 13398109 18185780 18194239 160897 169314 CM091751.1 scf7180002754741 98.61 True fake: scaffold gap size wrong estimation (extensive) 18194266 18211165 177085 193991 CM091751.1 scf7180002754741 99.23 True fake: scaffold gap size wrong estimation (local) 18211955 18242402 194536 224959 CM091751.1 scf7180002754741 99.34 True local misassembly 18242845 18263014 225268 245408 CM091751.1 scf7180002754741 98.88 True fake: scaffold gap size wrong estimation (local) 18263117 18281900 245491 264247 CM091751.1 scf7180002754741 98.24 True relocation, scaffold gap is present, inconsistency = -11660 18282177 18284211 276184 278218 CM091751.1 scf7180002754741 95.18 True indel: indel (<= 5bp) 18284213 18285904 278219 279910 CM091751.1 scf7180002754741 99.41 True indel: indel (<= 5bp) 18285905 18287157 279914 281166 CM091751.1 scf7180002754741 98.96 True indel: indel (<= 5bp) 18287163 18288817 281167 282821 CM091751.1 scf7180002754741 99.52 True indel: indel (> 5bp) 18288930 18289980 282942 283992 CM091751.1 scf7180002754741 99.62 True indel: indel (<= 5bp) 18289982 18290617 283993 284628 CM091751.1 scf7180002754741 99.37 True local misassembly 18291256 18292048 285276 286068 CM091751.1 scf7180002754741 99.37 True indel: indel (<= 5bp) 18292049 18292590 286070 286611 CM091751.1 scf7180002754741 98.52 True indel: indel (<= 5bp) 18292716 18293270 286739 287293 CM091751.1 scf7180002754741 98.56 True local misassembly 18293766 18295455 287795 289484 CM091751.1 scf7180002754741 99.7 True indel: indel (<= 5bp) 18295625 18296553 289649 290577 CM091751.1 scf7180002754741 98.92 True indel: indel (<= 5bp) 18296554 18298790 290579 292815 CM091751.1 scf7180002754741 99.33 True fake: scaffold gap size wrong estimation (local) 18298830 18299791 296425 297386 CM091751.1 scf7180002754741 98.2 True local misassembly 18300389 18345420 298018 342849 CM091751.1 scf7180002754741 98.76 True relocation, scaffold gap is present, inconsistency = -36702 18345306 18345851 379437 379982 CM091751.1 scf7180002754741 99.27 True CONTIG scf7180002754741 379982 misassembled 3246609 3253822 9348 2117 CM091754.1 scf7180002754742 98.85 True fake: scaffold gap size wrong estimation (local) 3244555 3246234 11680 10001 CM091754.1 scf7180002754742 99.52 True indel: indel (> 5bp) 3240958 3244174 15311 12092 CM091754.1 scf7180002754742 99.44 True fake: scaffold gap size wrong estimation (local) 3240440 3241000 19529 18969 CM091754.1 scf7180002754742 99.11 True fake: scaffold gap size wrong estimation (local) 3238470 3240439 21761 19792 CM091754.1 scf7180002754742 99.7 True fake: scaffold gap size wrong estimation (local) 3235741 3237248 24225 22718 CM091754.1 scf7180002754742 99.67 True indel: indel (<= 5bp) 3234155 3235662 25808 24301 CM091754.1 scf7180002754742 99.73 True indel: indel (<= 5bp) 3233327 3234154 26637 25810 CM091754.1 scf7180002754742 98.43 True local misassembly 3232252 3232760 27146 26638 CM091754.1 scf7180002754742 99.41 True indel: indel (<= 5bp) 3231230 3232250 28167 27147 CM091754.1 scf7180002754742 99.22 True indel: indel (<= 5bp) 3230465 3231229 28933 28169 CM091754.1 scf7180002754742 99.61 True indel: indel (<= 5bp) 3227699 3230461 31696 28934 CM091754.1 scf7180002754742 99.35 True indel: indel (<= 5bp) 3226294 3227338 33103 32059 CM091754.1 scf7180002754742 99.9 True indel: indel (> 5bp) 3225571 3226287 33820 33104 CM091754.1 scf7180002754742 99.44 True indel: stretch of mismatches 3223248 3225186 36143 34205 CM091754.1 scf7180002754742 99.07 True indel: indel (<= 5bp) 3222698 3223243 36689 36144 CM091754.1 scf7180002754742 99.27 True indel: indel (<= 5bp) 3220604 3222697 38786 36693 CM091754.1 scf7180002754742 99.57 True fake: scaffold gap size wrong estimation (local) 3217203 3218175 45699 44727 CM091754.1 scf7180002754742 99.18 True local misassembly 3215508 3216217 46409 45700 CM091754.1 scf7180002754742 99.72 True indel: indel (> 5bp) 3214504 3215500 47406 46410 CM091754.1 scf7180002754742 99.7 True indel: indel (<= 5bp) 3213942 3214501 47966 47407 CM091754.1 scf7180002754742 98.21 True indel: indel (<= 5bp) 3213034 3213941 48876 47969 CM091754.1 scf7180002754742 99.56 True fake: scaffold gap size wrong estimation (local) 3211039 3212616 50869 49292 CM091754.1 scf7180002754742 99.05 True indel: indel (<= 5bp) 3208563 3211037 53344 50870 CM091754.1 scf7180002754742 99.39 True indel: indel (<= 5bp) 3207799 3208562 54109 53346 CM091754.1 scf7180002754742 98.82 True indel: indel (<= 5bp) 3205843 3207798 56066 54111 CM091754.1 scf7180002754742 99.8 True indel: indel (<= 5bp) 3204735 3205840 57172 56067 CM091754.1 scf7180002754742 99.28 True indel: indel (<= 5bp) 3203093 3204364 58809 57538 CM091754.1 scf7180002754742 99.84 True fake: scaffold gap size wrong estimation (local) 3196233 3202506 65561 59310 CM091754.1 scf7180002754742 98.14 True fake: scaffold gap size wrong estimation (local) 3187175 3196078 74598 65727 CM091754.1 scf7180002754742 98.13 True fake: scaffold gap size wrong estimation (local) 3185669 3186570 78615 77714 CM091754.1 scf7180002754742 99.33 True indel: indel (<= 5bp) 3185064 3185668 79221 78617 CM091754.1 scf7180002754742 100.0 True local misassembly 3183336 3183845 80953 80444 CM091754.1 scf7180002754742 99.22 True indel: indel (> 5bp) 3181005 3183335 83295 80965 CM091754.1 scf7180002754742 99.44 True fake: scaffold gap size wrong estimation (local) 3171971 3180451 94313 86018 CM091754.1 scf7180002754742 96.45 True CONTIG scf7180002754742 97645 correct 3173070 3205887 2292 34865 CM091761.1 scf7180002754743 98.91 True fake: scaffold gap size wrong estimation (local) 3206106 3228956 35263 57548 CM091761.1 scf7180002754743 96.76 True fake: scaffold gap size wrong estimation (local) 3229208 3239124 57821 67736 CM091761.1 scf7180002754743 99.62 True fake: scaffold gap size wrong estimation (local) 3239597 3276095 73942 110038 CM091761.1 scf7180002754743 98.33 True fake: scaffold gap size wrong estimation (extensive) 3276101 3337021 117306 178426 CM091761.1 scf7180002754743 99.22 True fake: scaffold gap size wrong estimation (local) 3338036 3349293 179112 190055 CM091761.1 scf7180002754743 96.05 True fake: scaffold gap size wrong estimation (extensive) 3349318 3405001 198688 254414 CM091761.1 scf7180002754743 99.34 True relocation, scaffold gap is present, inconsistency = -27518 3405027 3409794 281958 286728 CM091761.1 scf7180002754743 99.52 True fake: scaffold gap size wrong estimation (local) 3410769 3431237 286933 306901 CM091761.1 scf7180002754743 96.6 True fake: scaffold gap size wrong estimation (local) 3431606 3432994 307660 309047 CM091761.1 scf7180002754743 99.42 True indel: indel (> 5bp) 3433211 3457090 309307 333235 CM091761.1 scf7180002754743 99.26 True indel: indel (> 5bp) 3457153 3464207 333308 340370 CM091761.1 scf7180002754743 99.24 True relocation, scaffold gap is present, inconsistency = -13287 3464237 3684303 353687 573800 CM091761.1 scf7180002754743 99.42 True CONTIG scf7180002754743 573807 misassembled 3379241 3407718 28637 1 CM091760.1 scf7180002754744 98.93 True relocation, scaffold gap is present, inconsistency = -18015 3321573 3378476 104440 47417 CM091760.1 scf7180002754744 98.97 True fake: scaffold gap size wrong estimation (local) 3311519 3321432 114472 104558 CM091760.1 scf7180002754744 99.6 True fake: scaffold gap size wrong estimation (local) 3306568 3310941 119360 114987 CM091760.1 scf7180002754744 99.5 True local misassembly 3302638 3305802 122525 119361 CM091760.1 scf7180002754744 99.84 True indel: indel (<= 5bp) 3300838 3302637 124326 122527 CM091760.1 scf7180002754744 99.89 True indel: indel (> 5bp) 3299960 3300827 125194 124327 CM091760.1 scf7180002754744 99.88 True fake: scaffold gap size wrong estimation (local) 3289301 3299703 138819 128386 CM091760.1 scf7180002754744 99.42 True fake: scaffold gap size wrong estimation (local) 3246163 3289080 181515 139063 CM091760.1 scf7180002754744 97.98 True CONTIG scf7180002754744 209647 misassembled 12908110 12931499 23408 1 CM091753.1 scf7180002754745 99.42 True relocation, scaffold gap is present, inconsistency = -11202 12855415 12907497 87351 35223 CM091753.1 scf7180002754745 99.15 True fake: scaffold gap size wrong estimation (local) 12838349 12856056 106682 89514 CM091753.1 scf7180002754745 96.37 True relocation, scaffold gap is present, inconsistency = -16781 12801540 12838354 160344 123458 CM091753.1 scf7180002754745 99.38 True CONTIG scf7180002754745 160670 misassembled 5185165 5221098 35638 1 CM091754.1 scf7180002754746 99.12 True fake: scaffold gap size wrong estimation (local) 5121922 5184874 98866 35929 CM091754.1 scf7180002754746 99.94 True relocation, scaffold gap is present, inconsistency = -53759 5101965 5121755 172559 152792 CM091754.1 scf7180002754746 99.71 True relocation, scaffold gap is present, inconsistency = -19934 5087885 5102218 206491 192240 CM091754.1 scf7180002754746 99.42 True CONTIG scf7180002754746 213554 misassembled 5013045 5020166 7120 1 CM091754.1 scf7180002754747 99.97 True translocation, scaffold gap is present 13484825 13494193 16508 7141 CM091755.1 scf7180002754747 98.9 True translocation, scaffold gap is present 5011201 5012820 24267 22648 CM091754.1 scf7180002754747 100.0 True fake: scaffold gap size wrong estimation (local) 5003798 5011237 32989 25753 CM091754.1 scf7180002754747 97.25 True translocation, scaffold gap is present 13464565 13484821 53298 33010 CM091755.1 scf7180002754747 99.08 True relocation, scaffold gap is present, inconsistency = -19494 13445611 13464594 91721 72763 CM091755.1 scf7180002754747 99.2 True fake: scaffold gap size wrong estimation (local) 13307294 13445589 230307 95927 CM091755.1 scf7180002754747 96.32 True local misassembly 13258234 13302325 274310 230308 CM091755.1 scf7180002754747 99.2 True indel: indel (> 5bp) 13239377 13258191 293206 274394 CM091755.1 scf7180002754747 98.99 True relocation, scaffold gap is present, inconsistency = -55817 13226128 13239307 362262 349093 CM091755.1 scf7180002754747 99.71 True fake: scaffold gap size wrong estimation (local) 13059230 13225802 528473 362906 CM091755.1 scf7180002754747 98.74 True CONTIG scf7180002754747 528526 misassembled 7349715 7387614 36506 1 CM091765.1 scf7180002754748 95.63 True fake: scaffold gap size wrong estimation (local) 7347890 7348599 42463 41754 CM091765.1 scf7180002754748 99.01 True fake: scaffold gap size wrong estimation (local) 7346496 7347451 44165 43210 CM091765.1 scf7180002754748 99.69 True local misassembly 7344937 7345469 45720 45188 CM091765.1 scf7180002754748 100.0 True indel: indel (<= 5bp) 7342753 7344612 47906 46047 CM091765.1 scf7180002754748 100.0 True local misassembly 7341460 7342200 49202 48462 CM091765.1 scf7180002754748 99.73 True fake: scaffold gap size wrong estimation (local) 7332675 7341472 60592 51770 CM091765.1 scf7180002754748 99.47 True fake: scaffold gap size wrong estimation (local) 7305811 7332693 97938 62796 CM091765.1 scf7180002754748 97.55 True fake: scaffold gap size wrong estimation (local) 7269651 7305540 134116 98255 CM091765.1 scf7180002754748 99.0 True relocation, scaffold gap is present, inconsistency = -10980 7259364 7269628 154938 145119 CM091765.1 scf7180002754748 95.26 True fake: not a misassembly (possible transposable element) 12060889 12063760 160169 157291 CM091760.1 scf7180002754748 99.65 True fake: not a misassembly (possible transposable element) 7251851 7258790 168256 161306 CM091765.1 scf7180002754748 99.31 True translocation, scaffold gap is present 12056737 12060607 172679 168277 CM091760.1 scf7180002754748 96.26 True indel: stretch of mismatches 12056032 12056736 173384 172680 CM091760.1 scf7180002754748 99.73 True indel: indel (<= 5bp) 12053851 12055910 175566 173507 CM091760.1 scf7180002754748 99.61 True indel: indel (<= 5bp) 12052327 12053850 177094 175571 CM091760.1 scf7180002754748 99.74 True indel: indel (<= 5bp) 12050130 12051851 179296 177575 CM091760.1 scf7180002754748 99.59 True indel: indel (<= 5bp) 12048564 12050129 180863 179298 CM091760.1 scf7180002754748 99.55 True indel: indel (<= 5bp) 12047609 12048563 181821 180867 CM091760.1 scf7180002754748 99.27 True relocation, scaffold gap is present, inconsistency = -10772 12045233 12047608 194969 192594 CM091760.1 scf7180002754748 99.54 True indel: indel (<= 5bp) 12044413 12045232 195790 194971 CM091760.1 scf7180002754748 99.76 True indel: indel (<= 5bp) 12041778 12044206 198423 195995 CM091760.1 scf7180002754748 99.75 True indel: stretch of mismatches 12040039 12041591 200162 198610 CM091760.1 scf7180002754748 100.0 True indel: indel (<= 5bp) 12037541 12039547 202663 200657 CM091760.1 scf7180002754748 98.7 True local misassembly 12036822 12037354 203196 202664 CM091760.1 scf7180002754748 100.0 True indel: indel (<= 5bp) 12035373 12036821 204647 203199 CM091760.1 scf7180002754748 99.65 True indel: indel (> 5bp) 12034001 12035344 206025 204682 CM091760.1 scf7180002754748 99.93 True fake: scaffold gap size wrong estimation (local) 12031772 12034000 208275 206047 CM091760.1 scf7180002754748 99.6 True indel: indel (<= 5bp) 12029462 12031771 210588 208279 CM091760.1 scf7180002754748 99.78 True fake: scaffold gap size wrong estimation (local) 12027153 12028267 212894 211780 CM091760.1 scf7180002754748 99.73 True fake: scaffold gap size wrong estimation (local) 12026497 12027152 213567 212912 CM091760.1 scf7180002754748 99.7 True CONTIG scf7180002754748 213935 misassembled 4040708 4042418 1 1710 CM091768.1 scf7180002754749 99.94 True fake: scaffold gap size wrong estimation (local) 4042485 4061871 1863 21270 CM091768.1 scf7180002754749 99.93 True fake: scaffold gap size wrong estimation (local) 4062471 4064545 21485 23559 CM091768.1 scf7180002754749 99.23 True relocation, inconsistency = 13535 4078081 4095350 23560 40547 CM091768.1 scf7180002754749 98.29 True CONTIG scf7180002754749 40547 misassembled 1696847 1705289 8493 35 CM091751.1 scf7180002754750 99.2 True local misassembly 1690220 1690998 9280 8494 CM091751.1 scf7180002754750 97.86 True fake: scaffold gap size wrong estimation (local) 1644594 1688933 54905 10499 CM091751.1 scf7180002754750 98.97 True fake: scaffold gap size wrong estimation (local) 1636175 1644335 63315 55168 CM091751.1 scf7180002754750 98.87 True fake: scaffold gap size wrong estimation (local) 1624824 1636078 74682 63413 CM091751.1 scf7180002754750 99.14 True fake: scaffold gap size wrong estimation (local) 1610476 1624178 92425 78721 CM091751.1 scf7180002754750 99.13 True fake: scaffold gap size wrong estimation (local) 1598909 1610293 103658 92612 CM091751.1 scf7180002754750 96.14 True CONTIG scf7180002754750 103659 correct 14994978 14998048 3076 1 CM091751.1 scf7180002754751 99.64 True fake: scaffold gap size wrong estimation (local) 14991204 14994279 6475 3400 CM091751.1 scf7180002754751 99.84 True fake: scaffold gap size wrong estimation (local) 14989575 14991107 8115 6583 CM091751.1 scf7180002754751 100.0 True fake: scaffold gap size wrong estimation (local) 14986421 14987691 9838 8568 CM091751.1 scf7180002754751 99.76 True fake: scaffold gap size wrong estimation (local) 14982220 14985874 16135 12527 CM091751.1 scf7180002754751 97.91 True local misassembly 14979394 14980116 18650 17928 CM091751.1 scf7180002754751 98.76 True fake: scaffold gap size wrong estimation (local) 14977453 14978227 20574 19800 CM091751.1 scf7180002754751 100.0 True indel: indel (<= 5bp) 14976703 14977451 21323 20575 CM091751.1 scf7180002754751 99.73 True indel: indel (<= 5bp) 14975244 14976658 22779 21365 CM091751.1 scf7180002754751 98.52 True local misassembly 14973034 14974245 24973 23762 CM091751.1 scf7180002754751 98.76 True fake: scaffold gap size wrong estimation (local) 14968776 14971683 28996 26089 CM091751.1 scf7180002754751 99.97 True fake: scaffold gap size wrong estimation (local) 14957408 14968671 40914 29651 CM091751.1 scf7180002754751 99.91 True fake: scaffold gap size wrong estimation (local) 14920455 14957283 81054 44563 CM091751.1 scf7180002754751 98.69 True relocation, scaffold gap is present, inconsistency = -36539 14788565 14920573 248696 117475 CM091751.1 scf7180002754751 98.9 True fake: scaffold gap size wrong estimation (local) 14784710 14786840 252027 249898 CM091751.1 scf7180002754751 99.58 True fake: scaffold gap size wrong estimation (local) 14781099 14784620 255893 252371 CM091751.1 scf7180002754751 99.69 True fake: scaffold gap size wrong estimation (local) 14763185 14781061 273412 255947 CM091751.1 scf7180002754751 97.24 True indel: indel (> 5bp) 14758610 14763138 278014 273483 CM091751.1 scf7180002754751 99.57 True local misassembly 14739523 14756810 295276 278015 CM091751.1 scf7180002754751 99.38 True relocation, scaffold gap is present, inconsistency = -31801 14737313 14738026 329287 328574 CM091751.1 scf7180002754751 99.3 True fake: scaffold gap size wrong estimation (local) 14735580 14737001 331066 329645 CM091751.1 scf7180002754751 99.44 True indel: indel (<= 5bp) 14734623 14735536 332025 331112 CM091751.1 scf7180002754751 99.23 True local misassembly 14705733 14733014 360913 333467 CM091751.1 scf7180002754751 99.5 True fake: scaffold gap size wrong estimation (local) 14671548 14705153 396407 362874 CM091751.1 scf7180002754751 99.32 True relocation, scaffold gap is present, inconsistency = -20165 14639630 14671507 447954 416613 CM091751.1 scf7180002754751 97.69 True indel: stretch of mismatches 14626266 14639629 461337 447955 CM091751.1 scf7180002754751 99.5 True indel: indel (> 5bp) 14625215 14626198 462360 461372 CM091751.1 scf7180002754751 99.39 True relocation, scaffold gap is present, inconsistency = -15772 14607306 14624830 495953 478517 CM091751.1 scf7180002754751 98.93 True CONTIG scf7180002754751 495977 misassembled 5364736 5454020 87899 1 CM091766.1 scf7180002754752 97.17 True relocation, scaffold gap is present, inconsistency = -49513 5410919 5411634 91239 90514 CM091766.1 scf7180002754752 99.83 True fake: scaffold gap size wrong estimation (local) 5351817 5363774 146728 134913 CM091766.1 scf7180002754752 97.64 True relocation, scaffold gap is present, inconsistency = -11576 5338559 5351815 171559 158306 CM091766.1 scf7180002754752 99.07 True fake: scaffold gap size wrong estimation (local) 5319679 5338189 197781 175917 CM091766.1 scf7180002754752 96.52 True fake: scaffold gap size wrong estimation (extensive) 5298210 5319677 228359 206911 CM091766.1 scf7180002754752 99.14 True fake: scaffold gap size wrong estimation (extensive) 5278459 5298119 255079 236120 CM091766.1 scf7180002754752 95.38 True fake: scaffold gap size wrong estimation (extensive) 5277790 5278622 262773 261940 CM091766.1 scf7180002754752 97.99 True fake: scaffold gap size wrong estimation (local) 5266223 5277155 273911 263047 CM091766.1 scf7180002754752 98.38 True indel: indel (> 5bp) 5213110 5266099 326456 274019 CM091766.1 scf7180002754752 97.81 True fake: scaffold gap size wrong estimation (extensive) 5206959 5211886 340244 335505 CM091766.1 scf7180002754752 95.26 True indel: indel (> 5bp) 5201325 5206676 345963 340600 CM091766.1 scf7180002754752 97.36 True fake: scaffold gap size wrong estimation (local) 5195614 5200951 354394 349056 CM091766.1 scf7180002754752 99.2 True CONTIG scf7180002754752 360064 misassembled 4764851 4769531 4681 1 CM091754.1 scf7180002754753 100.0 True fake: scaffold gap size wrong estimation (local) 4763498 4764107 6150 5541 CM091754.1 scf7180002754753 100.0 True CONTIG scf7180002754753 6390 correct 15461736 15462270 535 1 CM091751.1 scf7180002754754 97.6 True fake: not a misassembly (possible transposable element) 224146 225358 1750 536 CM091760.1 scf7180002754754 99.01 True fake: not a misassembly (possible transposable element) 15425277 15461459 37936 1771 CM091751.1 scf7180002754754 99.83 True relocation, scaffold gap is present, inconsistency = -36051 15364440 15425334 134755 73930 CM091751.1 scf7180002754754 99.51 True fake: scaffold gap size wrong estimation (local) 15362843 15364072 136355 135126 CM091751.1 scf7180002754754 98.21 True local misassembly 15353550 15362309 145137 136356 CM091751.1 scf7180002754754 99.61 True fake: scaffold gap size wrong estimation (local) 15346712 15353346 151965 145316 CM091751.1 scf7180002754754 99.71 True fake: scaffold gap size wrong estimation (local) 15303404 15346558 200501 156930 CM091751.1 scf7180002754754 99.1 True fake: scaffold gap size wrong estimation (local) 15285994 15303332 224257 206857 CM091751.1 scf7180002754754 99.13 True CONTIG scf7180002754754 224272 misassembled CONTIG scf7180002754755 63949 unaligned 5984112 6055223 71522 450 CM091754.1 scf7180002754756 99.73 True local misassembly 5967478 5979818 83863 71523 CM091754.1 scf7180002754756 99.88 True relocation, scaffold gap is present, inconsistency = -43723 5962429 5967169 132634 127895 CM091754.1 scf7180002754756 99.83 True fake: scaffold gap size wrong estimation (local) 5938023 5962178 161540 137364 CM091754.1 scf7180002754756 99.64 True relocation, scaffold gap is present, inconsistency = -19162 5917825 5937600 200881 181125 CM091754.1 scf7180002754756 99.73 True relocation, scaffold gap is present, inconsistency = -19576 5785157 5917832 353121 220450 CM091754.1 scf7180002754756 99.81 True relocation, scaffold gap is present, inconsistency = -124444 5783885 5784693 478837 478029 CM091754.1 scf7180002754756 100.0 True fake: scaffold gap size wrong estimation (local) 5749827 5783884 513824 479763 CM091754.1 scf7180002754756 99.95 True relocation, scaffold gap is present, inconsistency = -31890 5777771 5778316 517769 517225 CM091754.1 scf7180002754756 99.79 True fake: scaffold gap size wrong estimation (local) 5739944 5749086 554033 544892 CM091754.1 scf7180002754756 99.99 True fake: scaffold gap size wrong estimation (local) 5727397 5731763 567936 563569 CM091754.1 scf7180002754756 99.89 True relocation, scaffold gap is present, inconsistency = -10907 5736096 5738283 570144 567957 CM091754.1 scf7180002754756 100.0 True fake: scaffold gap size wrong estimation (extensive) 5724526 5727401 573337 570462 CM091754.1 scf7180002754756 100.0 True indel: indel (> 5bp) 5723601 5724496 574272 573377 CM091754.1 scf7180002754756 99.89 True relocation, scaffold gap is present, inconsistency = -10647 5732859 5734227 575661 574293 CM091754.1 scf7180002754756 100.0 True CONTIG scf7180002754756 577616 misassembled 11086108 11087740 2330 698 CM091758.1 scf7180002754757 98.47 True fake: scaffold gap size wrong estimation (local) 11049759 11085477 38726 3080 CM091758.1 scf7180002754757 99.34 True relocation, scaffold gap is present, inconsistency = -10360 11047036 11048993 51809 49852 CM091758.1 scf7180002754757 99.13 True indel: indel (> 5bp) 11041877 11046928 56976 51923 CM091758.1 scf7180002754757 99.82 True local misassembly 10996595 11038185 98566 56977 CM091758.1 scf7180002754757 99.2 True relocation, scaffold gap is present, inconsistency = -33732 10988869 10996459 140031 132434 CM091758.1 scf7180002754757 99.46 True indel: indel (> 5bp) 10966993 10988836 161703 140077 CM091758.1 scf7180002754757 98.46 True fake: scaffold gap size wrong estimation (extensive) 10902050 10966936 234235 169370 CM091758.1 scf7180002754757 99.59 True relocation, scaffold gap is present, inconsistency = -65010 10877575 10902159 324168 299136 CM091758.1 scf7180002754757 98.47 True CONTIG scf7180002754757 324168 misassembled 3044150 3076696 36273 3853 CM091761.1 scf7180002754758 98.34 True fake: scaffold gap size wrong estimation (local) 3025388 3044148 56595 37811 CM091761.1 scf7180002754758 99.55 True fake: scaffold gap size wrong estimation (local) 3010200 3024870 71787 57122 CM091761.1 scf7180002754758 99.5 True fake: scaffold gap size wrong estimation (extensive) 2988288 3009083 101277 80517 CM091761.1 scf7180002754758 99.51 True local misassembly 2980673 2987263 107861 101278 CM091761.1 scf7180002754758 99.66 True relocation, scaffold gap is present, inconsistency = -26267 2965354 2979833 149099 134968 CM091761.1 scf7180002754758 97.24 True fake: scaffold gap size wrong estimation (local) 2909714 2965165 207745 152240 CM091761.1 scf7180002754758 99.33 True fake: scaffold gap size wrong estimation (local) 2879822 2909601 237393 207857 CM091761.1 scf7180002754758 97.99 True fake: scaffold gap size wrong estimation (local) 2859165 2879820 258726 238057 CM091761.1 scf7180002754758 99.23 True fake: scaffold gap size wrong estimation (local) 2843536 2858648 275959 260944 CM091761.1 scf7180002754758 98.46 True relocation, scaffold gap is present, inconsistency = -14823 2798318 2843543 339585 290775 CM091761.1 scf7180002754758 98.68 True relocation, scaffold gap is present, inconsistency = -29391 2760104 2798305 406642 368989 CM091761.1 scf7180002754758 97.92 True fake: scaffold gap size wrong estimation (local) 2698770 2760123 468997 407374 CM091761.1 scf7180002754758 99.2 True fake: scaffold gap size wrong estimation (local) 2693633 2698318 474463 469750 CM091761.1 scf7180002754758 98.69 True fake: scaffold gap size wrong estimation (local) 2688671 2691175 478285 475781 CM091761.1 scf7180002754758 99.68 True fake: scaffold gap size wrong estimation (local) 2685627 2688670 482274 479231 CM091761.1 scf7180002754758 98.85 True indel: indel (<= 5bp) 2685063 2685625 482837 482275 CM091761.1 scf7180002754758 100.0 True indel: indel (<= 5bp) 2684427 2685061 483472 482838 CM091761.1 scf7180002754758 99.37 True indel: indel (<= 5bp) 2683295 2684413 484607 483489 CM091761.1 scf7180002754758 99.02 True fake: scaffold gap size wrong estimation (local) 2644740 2682714 523173 485205 CM091761.1 scf7180002754758 99.73 True CONTIG scf7180002754758 523364 misassembled 1133092 1164794 20 31668 CM091751.1 scf7180002754759 99.36 True relocation, scaffold gap is present, inconsistency = -21845 1164672 1182829 53391 71632 CM091751.1 scf7180002754759 99.17 True relocation, scaffold gap is present, inconsistency = -18966 1182987 1203063 90756 110849 CM091751.1 scf7180002754759 99.28 True CONTIG scf7180002754759 110887 misassembled 58646 80796 1 21510 CM091755.1 scf7180002754760 95.93 True fake: scaffold gap size wrong estimation (local) 80960 156551 21708 97335 CM091755.1 scf7180002754760 99.83 True relocation, scaffold gap is present, inconsistency = -33606 156537 172502 130927 146893 CM091755.1 scf7180002754760 99.96 True fake: scaffold gap size wrong estimation (local) 173530 187334 147226 160974 CM091755.1 scf7180002754760 99.4 True fake: scaffold gap size wrong estimation (local) 187351 204892 164918 182486 CM091755.1 scf7180002754760 99.95 True fake: scaffold gap size wrong estimation (local) 204900 229909 186260 211243 CM091755.1 scf7180002754760 99.73 True fake: scaffold gap size wrong estimation (local) 230365 240217 211840 221415 CM091755.1 scf7180002754760 96.99 True fake: scaffold gap size wrong estimation (local) 240243 271029 227895 258726 CM091755.1 scf7180002754760 99.85 True fake: scaffold gap size wrong estimation (local) 271947 350448 259113 337709 CM091755.1 scf7180002754760 99.86 True indel: indel (> 5bp) 350661 388337 337913 375613 CM091755.1 scf7180002754760 99.74 True fake: scaffold gap size wrong estimation (local) 388333 402612 376162 390465 CM091755.1 scf7180002754760 99.49 True relocation, scaffold gap is present, inconsistency = -11025 402623 414580 401501 413366 CM091755.1 scf7180002754760 99.02 True CONTIG scf7180002754760 413366 misassembled 132835 166078 1 32682 CM091754.1 scf7180002754761 97.23 True indel: indel (> 5bp) 166194 170905 32788 37382 CM091754.1 scf7180002754761 96.51 True fake: scaffold gap size wrong estimation (local) 171191 173852 37652 40315 CM091754.1 scf7180002754761 99.7 True indel: indel (<= 5bp) 173908 185283 40376 51435 CM091754.1 scf7180002754761 96.49 True fake: scaffold gap size wrong estimation (local) 185757 188602 51910 54756 CM091754.1 scf7180002754761 98.98 True translocation, scaffold gap is present 794711 806736 54789 66830 CM091756.1 scf7180002754761 99.1 True relocation, scaffold gap is present, inconsistency = -29836 806752 833399 96682 123397 CM091756.1 scf7180002754761 99.43 True CONTIG scf7180002754761 124120 misassembled 3323832 3342526 18969 301 CM091764.1 scf7180002754762 99.57 True relocation, scaffold gap is present, inconsistency = -11417 3285660 3322780 68548 31438 CM091764.1 scf7180002754762 99.75 True fake: scaffold gap size wrong estimation (local) 3252612 3285100 101478 68882 CM091764.1 scf7180002754762 99.44 True fake: scaffold gap size wrong estimation (local) 3162465 3252381 192076 101672 CM091764.1 scf7180002754762 99.43 True translocation, scaffold gap is present 3255223 3291023 228104 192123 CM091759.1 scf7180002754762 98.49 True translocation, scaffold gap is present 3161238 3162431 229363 228170 CM091764.1 scf7180002754762 99.83 True indel: indel (<= 5bp) 3155729 3160783 234875 229821 CM091764.1 scf7180002754762 99.94 True indel: stretch of mismatches 3151061 3155654 239543 234950 CM091764.1 scf7180002754762 99.8 True indel: indel (> 5bp) 3150338 3151045 240251 239544 CM091764.1 scf7180002754762 99.72 True indel: indel (<= 5bp) 3145849 3150337 244741 240253 CM091764.1 scf7180002754762 99.89 True local misassembly 3143285 3144822 247313 245776 CM091764.1 scf7180002754762 99.87 True indel: indel (> 5bp) 3138977 3143275 251612 247314 CM091764.1 scf7180002754762 99.81 True indel: indel (<= 5bp) 3136079 3138975 254509 251613 CM091764.1 scf7180002754762 99.55 True relocation, scaffold gap is present, inconsistency = -10278 3134225 3135797 266641 265069 CM091764.1 scf7180002754762 99.81 True indel: indel (<= 5bp) 3133517 3134224 267350 266643 CM091764.1 scf7180002754762 100.0 True indel: indel (<= 5bp) 3131852 3133117 269017 267752 CM091764.1 scf7180002754762 99.92 True indel: indel (<= 5bp) 3127911 3131851 272959 269019 CM091764.1 scf7180002754762 99.92 True indel: indel (<= 5bp) 3126553 3127910 274318 272961 CM091764.1 scf7180002754762 99.85 True relocation, scaffold gap is present, inconsistency = -17019 3124708 3126185 293182 291705 CM091764.1 scf7180002754762 99.8 True indel: indel (> 5bp) 3123251 3124707 294648 293192 CM091764.1 scf7180002754762 99.59 True indel: indel (<= 5bp) 3121505 3123250 296395 294650 CM091764.1 scf7180002754762 99.77 True local misassembly 3119550 3120772 298353 297131 CM091764.1 scf7180002754762 99.92 True indel: indel (<= 5bp) 3117817 3119549 300087 298355 CM091764.1 scf7180002754762 99.88 True indel: indel (<= 5bp) 3114034 3117554 303872 300352 CM091764.1 scf7180002754762 99.91 True indel: indel (<= 5bp) 3113183 3114032 304722 303873 CM091764.1 scf7180002754762 100.0 True indel: indel (<= 5bp) 3109831 3113182 308075 304724 CM091764.1 scf7180002754762 99.94 True indel: indel (<= 5bp) 3106128 3109830 311779 308077 CM091764.1 scf7180002754762 99.89 True fake: not a misassembly (possible transposable element) 3224971 3229821 316639 311800 CM091759.1 scf7180002754762 99.66 True fake: not a misassembly (possible transposable element) 2976860 3106224 445842 316640 CM091764.1 scf7180002754762 99.36 True fake: scaffold gap size wrong estimation (local) 2910442 2976872 516108 449561 CM091764.1 scf7180002754762 99.62 True fake: scaffold gap size wrong estimation (local) 2891471 2909773 541718 523408 CM091764.1 scf7180002754762 99.72 True fake: scaffold gap size wrong estimation (local) 2882855 2891231 551799 543464 CM091764.1 scf7180002754762 99.07 True fake: scaffold gap size wrong estimation (extensive) 2871453 2882604 570032 559209 CM091764.1 scf7180002754762 96.83 True fake: scaffold gap size wrong estimation (local) 2870419 2871460 574005 572965 CM091764.1 scf7180002754762 99.62 True CONTIG scf7180002754762 574502 misassembled 2271580 2273920 2927 5267 CM091753.1 scf7180002754763 99.32 True fake: scaffold gap size wrong estimation (local) 2274557 2277489 5899 8831 CM091753.1 scf7180002754763 99.76 True fake: scaffold gap size wrong estimation (local) 2277768 2289098 9317 20650 CM091753.1 scf7180002754763 99.84 True fake: scaffold gap size wrong estimation (extensive) 2289291 2293293 30118 34115 CM091753.1 scf7180002754763 99.63 True relocation, scaffold gap is present, inconsistency = -10271 2293324 2311266 44417 62320 CM091753.1 scf7180002754763 99.42 True fake: scaffold gap size wrong estimation (local) 2311331 2433537 62370 184553 CM091753.1 scf7180002754763 99.59 True translocation 1745978 1748180 184648 186847 CM091754.1 scf7180002754763 99.41 True fake: scaffold gap size wrong estimation (local) 1748826 1757930 187493 196626 CM091754.1 scf7180002754763 99.14 True fake: scaffold gap size wrong estimation (local) 1757827 1762710 199249 203938 CM091754.1 scf7180002754763 95.38 True fake: scaffold gap size wrong estimation (local) 1762692 1779815 207934 225420 CM091754.1 scf7180002754763 97.88 True fake: scaffold gap size wrong estimation (extensive) 1780097 1830464 233497 283684 CM091754.1 scf7180002754763 99.05 True fake: scaffold gap size wrong estimation (local) 1830614 1838401 283835 291628 CM091754.1 scf7180002754763 99.31 True indel: indel (> 5bp) 1838429 1850425 291675 303668 CM091754.1 scf7180002754763 99.43 True fake: scaffold gap size wrong estimation (extensive) 1850879 1864647 311534 328161 CM091754.1 scf7180002754763 97.05 True fake: scaffold gap size wrong estimation (extensive) 1864708 1927702 337624 400494 CM091754.1 scf7180002754763 99.45 True relocation, scaffold gap is present, inconsistency = -51668 1927787 1944286 452247 468748 CM091754.1 scf7180002754763 99.75 True fake: scaffold gap size wrong estimation (local) 1945176 1945947 469303 470074 CM091754.1 scf7180002754763 99.74 True relocation, inconsistency = 9334 1955393 1955925 470186 470718 CM091754.1 scf7180002754763 96.06 True fake: scaffold gap size wrong estimation (local) 1957140 1960996 472045 475901 CM091754.1 scf7180002754763 99.95 True indel: indel (<= 5bp) 1960997 1963889 475903 478795 CM091754.1 scf7180002754763 99.97 True indel: indel (<= 5bp) 1964035 1964958 478940 479863 CM091754.1 scf7180002754763 99.78 True indel: indel (<= 5bp) 1964959 1966460 479865 481366 CM091754.1 scf7180002754763 99.93 True indel: indel (> 5bp) 1966461 1967679 481387 482605 CM091754.1 scf7180002754763 99.92 True indel: indel (> 5bp) 1967680 1971266 482616 486202 CM091754.1 scf7180002754763 99.92 True indel: indel (<= 5bp) 1971267 1972638 486205 487576 CM091754.1 scf7180002754763 99.56 True indel: indel (> 5bp) 1972655 1973472 487577 488394 CM091754.1 scf7180002754763 99.63 True indel: indel (> 5bp) 1973479 1975124 488395 490040 CM091754.1 scf7180002754763 99.82 True relocation, scaffold gap is present, inconsistency = -18097 1975197 1980630 508210 513629 CM091754.1 scf7180002754763 99.53 True CONTIG scf7180002754763 513629 misassembled 10841692 10871888 30193 1 CM091758.1 scf7180002754764 99.6 True relocation, scaffold gap is present, inconsistency = -17487 10831905 10841660 57785 47712 CM091758.1 scf7180002754764 98.1 True fake: scaffold gap size wrong estimation (local) 10815779 10831086 76049 60766 CM091758.1 scf7180002754764 99.03 True relocation, scaffold gap is present, inconsistency = -11572 10766700 10815754 136581 87646 CM091758.1 scf7180002754764 99.19 True relocation, scaffold gap is present, inconsistency = -39505 10748826 10766686 193980 176100 CM091758.1 scf7180002754764 99.42 True fake: scaffold gap size wrong estimation (local) 10733045 10749010 210351 194436 CM091758.1 scf7180002754764 99.23 True fake: scaffold gap size wrong estimation (local) 10657536 10733065 286656 211040 CM091758.1 scf7180002754764 99.37 True fake: scaffold gap size wrong estimation (extensive) 10644754 10656704 307210 295395 CM091758.1 scf7180002754764 98.44 True fake: scaffold gap size wrong estimation (local) 10618327 10644586 339828 313611 CM091758.1 scf7180002754764 99.43 True relocation, scaffold gap is present, inconsistency = -11128 10598229 10618016 371069 351267 CM091758.1 scf7180002754764 99.3 True relocation, scaffold gap is present, inconsistency = -19600 10578517 10598231 410395 390667 CM091758.1 scf7180002754764 99.27 True indel: indel (> 5bp) 10577799 10578464 411157 410491 CM091758.1 scf7180002754764 99.7 True fake: scaffold gap size wrong estimation (extensive) 10540936 10577770 457576 421035 CM091758.1 scf7180002754764 98.54 True CONTIG scf7180002754764 457576 misassembled 5439590 5445989 1 6397 CM091768.1 scf7180002754765 99.78 True fake: scaffold gap size wrong estimation (local) 5446635 5455935 7045 16345 CM091768.1 scf7180002754765 100.0 True fake: scaffold gap size wrong estimation (local) 5457557 5470501 18061 31006 CM091768.1 scf7180002754765 99.86 True CONTIG scf7180002754765 31006 correct 3556555 3559878 1 3315 CM091757.1 scf7180002754766 98.96 True fake: scaffold gap size wrong estimation (local) 3560344 3566510 3781 9985 CM091757.1 scf7180002754766 98.97 True fake: scaffold gap size wrong estimation (local) 3567376 3712042 12636 157288 CM091757.1 scf7180002754766 98.71 True fake: scaffold gap size wrong estimation (local) 3712527 3715465 157709 160646 CM091757.1 scf7180002754766 99.18 True fake: scaffold gap size wrong estimation (local) 3715585 3748903 160768 194232 CM091757.1 scf7180002754766 97.93 True relocation, scaffold gap is present, inconsistency = -21110 3749086 3758889 215525 225494 CM091757.1 scf7180002754766 99.19 True CONTIG scf7180002754766 225494 misassembled 3916545 3961201 44675 1 CM091751.1 scf7180002754767 99.16 True indel: indel (> 5bp) 3913663 3916487 47548 44725 CM091751.1 scf7180002754767 99.47 True indel: indel (<= 5bp) 3838188 3913616 123287 47597 CM091751.1 scf7180002754767 98.92 True fake: scaffold gap size wrong estimation (local) 3823167 3837703 138024 123468 CM091751.1 scf7180002754767 99.18 True indel: stretch of mismatches 3755586 3823120 205472 138071 CM091751.1 scf7180002754767 98.78 True indel: indel (> 5bp) 3714322 3755547 246488 205534 CM091751.1 scf7180002754767 98.4 True relocation, scaffold gap is present, inconsistency = -22769 3711023 3714146 272550 269433 CM091751.1 scf7180002754767 99.65 True indel: indel (> 5bp) 3660269 3710973 323305 272620 CM091751.1 scf7180002754767 99.2 True fake: scaffold gap size wrong estimation (local) 3644649 3659773 341241 326107 CM091751.1 scf7180002754767 99.21 True fake: scaffold gap size wrong estimation (local) 3618934 3644624 367775 342589 CM091751.1 scf7180002754767 97.13 True fake: scaffold gap size wrong estimation (local) 3596630 3618577 395962 373969 CM091751.1 scf7180002754767 99.3 True relocation, scaffold gap is present, inconsistency = -16762 3537237 3596618 471544 412736 CM091751.1 scf7180002754767 98.06 True indel: stretch of mismatches 3524901 3537236 483887 471545 CM091751.1 scf7180002754767 99.59 True relocation, scaffold gap is present, inconsistency = -58782 3523368 3524635 544202 542935 CM091751.1 scf7180002754767 100.0 True indel: indel (> 5bp) 3522390 3523099 545171 544462 CM091751.1 scf7180002754767 98.03 True local misassembly 3520608 3522090 546818 545336 CM091751.1 scf7180002754767 100.0 True CONTIG scf7180002754767 549586 misassembled 3019929 3054705 1 34952 CM091755.1 scf7180002754768 99.21 True fake: scaffold gap size wrong estimation (local) 3054673 3057222 35896 38445 CM091755.1 scf7180002754768 98.78 True indel: indel (> 5bp) 3057600 3060043 38835 41278 CM091755.1 scf7180002754768 99.67 True indel: indel (> 5bp) 3060050 3061812 41279 43041 CM091755.1 scf7180002754768 99.6 True indel: stretch of mismatches 3062124 3064759 43353 45988 CM091755.1 scf7180002754768 99.77 True indel: indel (<= 5bp) 3064760 3065695 45990 46925 CM091755.1 scf7180002754768 99.89 True local misassembly 3066355 3067581 47583 48809 CM091755.1 scf7180002754768 99.76 True indel: indel (<= 5bp) 3067582 3068133 48811 49362 CM091755.1 scf7180002754768 99.82 True indel: indel (<= 5bp) 3068135 3068642 49363 49870 CM091755.1 scf7180002754768 99.61 True relocation, scaffold gap is present, inconsistency = -14423 3069283 3071963 64934 67618 CM091755.1 scf7180002754768 99.68 True translocation 6158624 6187364 96126 67619 CM091765.1 scf7180002754768 98.54 True fake: scaffold gap size wrong estimation (local) 6137305 6157457 116975 96813 CM091765.1 scf7180002754768 99.39 True relocation, scaffold gap is present, inconsistency = -13032 6105836 6137267 161480 130045 CM091765.1 scf7180002754768 99.61 True translocation, scaffold gap is present 6754817 6787711 194358 161501 CM091757.1 scf7180002754768 99.3 True translocation, scaffold gap is present 6095762 6105824 233931 223866 CM091765.1 scf7180002754768 99.67 True translocation, scaffold gap is present 6728394 6754881 263373 236873 CM091757.1 scf7180002754768 99.43 True translocation, scaffold gap is present 6089245 6095769 276154 269621 CM091765.1 scf7180002754768 99.57 True fake: scaffold gap size wrong estimation (local) 6067270 6089267 303598 281571 CM091765.1 scf7180002754768 99.6 True translocation, scaffold gap is present 6699402 6728074 332338 303619 CM091757.1 scf7180002754768 99.41 True translocation, scaffold gap is present 6045890 6067216 353699 332361 CM091765.1 scf7180002754768 99.58 True relocation, scaffold gap is present, inconsistency = -20817 6009475 6045876 410929 374530 CM091765.1 scf7180002754768 99.28 True fake: scaffold gap size wrong estimation (local) 5997733 6009248 422916 411383 CM091765.1 scf7180002754768 99.64 True indel: indel (<= 5bp) 5975205 5997671 445469 422979 CM091765.1 scf7180002754768 99.58 True relocation, scaffold gap is present, inconsistency = -32850 5998922 5999459 454602 454065 CM091765.1 scf7180002754768 99.57 True fake: scaffold gap size wrong estimation (local) 5965973 5975216 487665 478398 CM091765.1 scf7180002754768 99.64 True fake: scaffold gap size wrong estimation (local) 5952240 5964989 500437 487686 CM091765.1 scf7180002754768 99.84 True relocation, scaffold gap is present, inconsistency = -12487 5910295 5952202 554843 512962 CM091765.1 scf7180002754768 99.5 True CONTIG scf7180002754768 555612 misassembled 5797012 5798822 1811 1 CM091767.1 scf7180002754769 97.96 True indel: indel (> 5bp) 5795818 5796818 3049 2049 CM091767.1 scf7180002754769 96.9 True indel: stretch of mismatches 5795058 5795607 3809 3260 CM091767.1 scf7180002754769 99.27 True local misassembly 5793955 5794890 4745 3810 CM091767.1 scf7180002754769 99.47 True local misassembly 5792511 5793517 6371 5365 CM091767.1 scf7180002754769 99.3 True indel: indel (> 5bp) 5790416 5792130 8453 6739 CM091767.1 scf7180002754769 99.01 True indel: indel (<= 5bp) 5788269 5790415 10601 8455 CM091767.1 scf7180002754769 98.28 True local misassembly 5786051 5787602 12153 10602 CM091767.1 scf7180002754769 99.61 True fake: scaffold gap size wrong estimation (local) 5785312 5785948 14297 13661 CM091767.1 scf7180002754769 98.43 True fake: scaffold gap size wrong estimation (local) 5783866 5784802 15512 14576 CM091767.1 scf7180002754769 99.68 True indel: indel (> 5bp) 5781397 5783850 17966 15513 CM091767.1 scf7180002754769 99.1 True indel: indel (<= 5bp) 5780686 5781396 18682 17972 CM091767.1 scf7180002754769 98.17 True fake: scaffold gap size wrong estimation (local) 5779382 5780108 24352 23626 CM091767.1 scf7180002754769 99.72 True local misassembly 5778174 5778746 25557 24985 CM091767.1 scf7180002754769 99.83 True fake: scaffold gap size wrong estimation (local) 5776696 5778082 27030 25644 CM091767.1 scf7180002754769 99.21 True local misassembly 5775103 5775849 28636 27890 CM091767.1 scf7180002754769 99.6 True indel: indel (> 5bp) 5773293 5774695 30458 29056 CM091767.1 scf7180002754769 98.0 True indel: indel (<= 5bp) 5772420 5773291 31330 30459 CM091767.1 scf7180002754769 98.97 True indel: indel (> 5bp) 5771752 5772354 31989 31387 CM091767.1 scf7180002754769 99.5 True indel: indel (> 5bp) 5770921 5771751 32851 32021 CM091767.1 scf7180002754769 99.04 True fake: scaffold gap size wrong estimation (local) 5769135 5770240 34608 33503 CM091767.1 scf7180002754769 99.64 True local misassembly 5766945 5768175 36384 35154 CM091767.1 scf7180002754769 97.48 True fake: scaffold gap size wrong estimation (local) 5727829 5766712 74703 36648 CM091767.1 scf7180002754769 96.28 True fake: scaffold gap size wrong estimation (local) 5707078 5726824 95230 75434 CM091767.1 scf7180002754769 98.93 True fake: scaffold gap size wrong estimation (local) 5701686 5706589 100683 95815 CM091767.1 scf7180002754769 97.8 True fake: scaffold gap size wrong estimation (local) 5692200 5701659 111191 101712 CM091767.1 scf7180002754769 99.22 True CONTIG scf7180002754769 111191 correct 15269594 15304533 34942 1 CM091754.1 scf7180002754770 99.82 True relocation, scaffold gap is present, inconsistency = -21523 15258853 15268871 67206 57188 CM091754.1 scf7180002754770 99.94 True fake: scaffold gap size wrong estimation (local) 15257473 15258852 68623 67244 CM091754.1 scf7180002754770 99.71 True fake: scaffold gap size wrong estimation (local) 15256412 15257472 69708 68648 CM091754.1 scf7180002754770 99.91 True fake: scaffold gap size wrong estimation (local) 15255902 15256411 70247 69738 CM091754.1 scf7180002754770 100.0 True fake: scaffold gap size wrong estimation (local) 15217749 15254400 106497 70849 CM091754.1 scf7180002754770 96.99 True fake: scaffold gap size wrong estimation (local) 15150491 15217765 180492 113243 CM091754.1 scf7180002754770 99.81 True relocation, scaffold gap is present, inconsistency = -64065 15089345 15150414 305450 244634 CM091754.1 scf7180002754770 99.3 True fake: scaffold gap size wrong estimation (local) 15066393 15087185 326497 306147 CM091754.1 scf7180002754770 97.26 True fake: scaffold gap size wrong estimation (local) 15064779 15065763 327739 326757 CM091754.1 scf7180002754770 99.78 True indel: indel (> 5bp) 14938114 15064701 452913 327775 CM091754.1 scf7180002754770 98.61 True CONTIG scf7180002754770 452913 misassembled 13862736 13894170 31354 19 CM091755.1 scf7180002754771 99.09 True relocation, scaffold gap is present, inconsistency = -16381 13832392 13862700 78095 47771 CM091755.1 scf7180002754771 99.09 True relocation, scaffold gap is present, inconsistency = -30202 13791324 13832389 149337 108300 CM091755.1 scf7180002754771 99.13 True fake: scaffold gap size wrong estimation (local) 13787577 13790724 153418 150240 CM091755.1 scf7180002754771 96.48 True fake: scaffold gap size wrong estimation (local) 13767170 13786769 174699 155102 CM091755.1 scf7180002754771 99.35 True relocation, scaffold gap is present, inconsistency = -14146 13763270 13767240 192743 188775 CM091755.1 scf7180002754771 99.8 True CONTIG scf7180002754771 192743 misassembled 3673586 3701452 27889 1 CM091759.1 scf7180002754772 99.39 True fake: scaffold gap size wrong estimation (local) 3658546 3673334 42580 28257 CM091759.1 scf7180002754772 96.15 True fake: scaffold gap size wrong estimation (local) 3615923 3658486 91950 49415 CM091759.1 scf7180002754772 99.08 True relocation, inconsistency = 42877 3701364 3761744 91951 151635 CM091759.1 scf7180002754772 98.32 True relocation, scaffold gap is present, inconsistency = -31314 3762051 3797027 183256 217642 CM091759.1 scf7180002754772 97.62 True CONTIG scf7180002754772 217642 misassembled 12658519 12667925 1 9086 CM091757.1 scf7180002754773 96.58 True fake: scaffold gap size wrong estimation (local) 12667930 12694149 15847 42068 CM091757.1 scf7180002754773 99.77 True fake: scaffold gap size wrong estimation (local) 12694593 12709678 44687 59804 CM091757.1 scf7180002754773 99.48 True fake: scaffold gap size wrong estimation (extensive) 12709688 12735110 68763 94300 CM091757.1 scf7180002754773 99.25 True relocation, scaffold gap is present, inconsistency = -24476 12735010 12760589 118676 144364 CM091757.1 scf7180002754773 99.15 True fake: scaffold gap size wrong estimation (local) 12760643 12762897 149918 152172 CM091757.1 scf7180002754773 99.6 True indel: indel (> 5bp) 12762928 12937474 152196 326565 CM091757.1 scf7180002754773 99.37 True relocation, scaffold gap is present, inconsistency = -15939 12937495 12980779 342525 385825 CM091757.1 scf7180002754773 99.77 True fake: scaffold gap size wrong estimation (local) 12981105 13014101 386151 418555 CM091757.1 scf7180002754773 98.07 True fake: scaffold gap size wrong estimation (local) 13014101 13053405 423418 462728 CM091757.1 scf7180002754773 99.88 True relocation, scaffold gap is present, inconsistency = -19487 13053287 13071382 482097 500192 CM091757.1 scf7180002754773 99.86 True fake: scaffold gap size wrong estimation (local) 13071817 13072928 505861 506972 CM091757.1 scf7180002754773 100.0 True CONTIG scf7180002754773 515378 misassembled 12205035 12223109 18055 1 CM091756.1 scf7180002754774 99.27 True fake: scaffold gap size wrong estimation (local) 12202818 12203558 19371 18631 CM091756.1 scf7180002754774 99.06 True local misassembly 12204008 12204914 20596 19697 CM091756.1 scf7180002754774 98.79 True fake: scaffold gap size wrong estimation (local) 12198250 12202410 24942 20828 CM091756.1 scf7180002754774 97.72 True local misassembly 12194750 12197666 27862 24943 CM091756.1 scf7180002754774 98.61 True fake: scaffold gap size wrong estimation (extensive) 12179283 12194763 51627 36182 CM091756.1 scf7180002754774 99.19 True fake: scaffold gap size wrong estimation (extensive) 12172404 12179124 67034 60309 CM091756.1 scf7180002754774 98.59 True fake: scaffold gap size wrong estimation (local) 12156840 12172248 82633 67186 CM091756.1 scf7180002754774 99.14 True indel: indel (> 5bp) 12150963 12156727 88456 82690 CM091756.1 scf7180002754774 99.79 True local misassembly 12148321 12150337 91136 89120 CM091756.1 scf7180002754774 100.0 True local misassembly 12144006 12147540 94875 91341 CM091756.1 scf7180002754774 99.89 True indel: indel (<= 5bp) 12141229 12144005 97653 94877 CM091756.1 scf7180002754774 99.93 True CONTIG scf7180002754774 97658 correct 13987507 14007965 1 20419 CM091758.1 scf7180002754775 98.75 True fake: scaffold gap size wrong estimation (extensive) 14009563 14016967 31978 39382 CM091758.1 scf7180002754775 99.07 True local misassembly 14017790 14023565 39704 45477 CM091758.1 scf7180002754775 98.74 True indel: indel (<= 5bp) 14023753 14028487 45669 50453 CM091758.1 scf7180002754775 97.85 True indel: indel (> 5bp) 14028553 14030705 50549 52665 CM091758.1 scf7180002754775 97.13 True fake: scaffold gap size wrong estimation (extensive) 14030776 14034437 62657 66315 CM091758.1 scf7180002754775 99.5 True translocation 5085452 5105161 86037 66316 CM091762.1 scf7180002754775 99.81 True local misassembly 5064687 5084182 105540 86038 CM091762.1 scf7180002754775 99.67 True relocation, scaffold gap is present, inconsistency = -37825 5054366 5064685 153692 143367 CM091762.1 scf7180002754775 99.51 True fake: scaffold gap size wrong estimation (local) 5027383 5054141 180678 154206 CM091762.1 scf7180002754775 98.34 True fake: scaffold gap size wrong estimation (local) 4911564 5027352 298555 182830 CM091762.1 scf7180002754775 99.45 True relocation, scaffold gap is present, inconsistency = -36527 4653113 4911564 593765 335082 CM091762.1 scf7180002754775 99.55 True fake: scaffold gap size wrong estimation (local) 4628190 4652731 623754 599173 CM091762.1 scf7180002754775 99.45 True relocation, scaffold gap is present, inconsistency = -24615 4598385 4628196 678196 648363 CM091762.1 scf7180002754775 99.61 True translocation 5387309 5388393 678197 679281 CM091751.1 scf7180002754775 99.19 True CONTIG scf7180002754775 679281 misassembled 340948 353811 1 12975 CM091751.1 scf7180002754776 98.96 True fake: scaffold gap size wrong estimation (local) 353970 368121 13135 27279 CM091751.1 scf7180002754776 98.28 True fake: scaffold gap size wrong estimation (local) 368209 400415 27333 59660 CM091751.1 scf7180002754776 98.86 True fake: scaffold gap size wrong estimation (local) 400532 419552 59752 78646 CM091751.1 scf7180002754776 98.4 True fake: scaffold gap size wrong estimation (local) 419550 446972 83207 109950 CM091751.1 scf7180002754776 97.34 True relocation, scaffold gap is present, inconsistency = -22280 446889 524938 132147 210203 CM091751.1 scf7180002754776 99.71 True fake: scaffold gap size wrong estimation (local) 524998 573098 210259 258145 CM091751.1 scf7180002754776 99.01 True relocation, scaffold gap is present, inconsistency = -33804 573295 662840 292146 381676 CM091751.1 scf7180002754776 99.46 True translocation, scaffold gap is present 14499864 14505628 450162 455930 CM091756.1 scf7180002754776 99.31 True indel: indel (> 5bp) 14505685 14510355 455994 460635 CM091756.1 scf7180002754776 99.04 True relocation, scaffold gap is present, inconsistency = -10046 14510530 14528772 470856 489104 CM091756.1 scf7180002754776 99.53 True translocation, scaffold gap is present 663002 664335 489125 490458 CM091751.1 scf7180002754776 100.0 True CONTIG scf7180002754776 508403 misassembled 1256149 1270111 1 13456 CM091755.1 scf7180002754777 95.95 True fake: scaffold gap size wrong estimation (local) 1270174 1281907 16079 27772 CM091755.1 scf7180002754777 99.58 True fake: scaffold gap size wrong estimation (local) 1281947 1307472 33895 59150 CM091755.1 scf7180002754777 98.34 True CONTIG scf7180002754777 59614 correct 3211648 3217069 5447 10 CM091760.1 scf7180002754778 99.36 True fake: scaffold gap size wrong estimation (local) 3210191 3211268 9511 8433 CM091760.1 scf7180002754778 99.81 True local misassembly 3024508 3209666 194333 11080 CM091760.1 scf7180002754778 98.26 True indel: indel (> 5bp) 3021574 3024485 197306 194394 CM091760.1 scf7180002754778 99.45 True relocation, scaffold gap is present, inconsistency = -165339 3164753 3165439 219473 218780 CM091760.1 scf7180002754778 99.81 True fake: scaffold gap size wrong estimation (local) 3093647 3094157 288814 288291 CM091760.1 scf7180002754778 98.94 True fake: scaffold gap size wrong estimation (local) 3008805 3021579 373660 360871 CM091760.1 scf7180002754778 99.34 True fake: scaffold gap size wrong estimation (local) 2944245 3008605 438447 374047 CM091760.1 scf7180002754778 99.53 True fake: scaffold gap size wrong estimation (local) 2868456 2944103 514527 438976 CM091760.1 scf7180002754778 99.24 True relocation, scaffold gap is present, inconsistency = -49975 2858022 2868125 574940 564833 CM091760.1 scf7180002754778 99.62 True fake: scaffold gap size wrong estimation (local) 2845156 2857697 593819 581270 CM091760.1 scf7180002754778 99.52 True relocation, scaffold gap is present, inconsistency = -12461 2825917 2845157 625466 606279 CM091760.1 scf7180002754778 99.04 True indel: indel (> 5bp) 2819075 2825688 632254 625658 CM091760.1 scf7180002754778 99.24 True local misassembly 2625494 2818113 826011 633239 CM091760.1 scf7180002754778 99.52 True indel: indel (> 5bp) 2588597 2625198 862853 826241 CM091760.1 scf7180002754778 99.43 True relocation, scaffold gap is present, inconsistency = -18824 2476977 2588313 993262 881961 CM091760.1 scf7180002754778 99.74 True relocation, scaffold gap is present, inconsistency = -101912 2529440 2530037 1042731 1042114 CM091760.1 scf7180002754778 99.59 True CONTIG scf7180002754778 1095311 misassembled 12669520 12725629 11 55831 CM091755.1 scf7180002754779 98.34 True relocation, scaffold gap is present, inconsistency = -37457 12725610 12759659 93269 127324 CM091755.1 scf7180002754779 99.37 True fake: scaffold gap size wrong estimation (local) 12759926 12787907 129682 157675 CM091755.1 scf7180002754779 99.42 True relocation, scaffold gap is present, inconsistency = -27571 12788124 12806952 185463 204310 CM091755.1 scf7180002754779 99.16 True relocation, inconsistency = 71805 12878758 12887858 204311 213408 CM091755.1 scf7180002754779 99.51 True indel: indel (> 5bp) 12887881 12890274 213456 215851 CM091755.1 scf7180002754779 99.83 True fake: scaffold gap size wrong estimation (local) 12890277 12913340 220551 243614 CM091755.1 scf7180002754779 99.28 True fake: scaffold gap size wrong estimation (local) 12913340 13044566 247424 378186 CM091755.1 scf7180002754779 98.88 True local misassembly 13045314 13050613 378972 384272 CM091755.1 scf7180002754779 99.6 True CONTIG scf7180002754779 385897 misassembled 2093293 2102399 11088 1969 CM091753.1 scf7180002754780 99.95 True local misassembly 2081126 2092749 22904 11282 CM091753.1 scf7180002754780 99.89 True relocation, scaffold gap is present, inconsistency = -19540 2036036 2080749 87525 42821 CM091753.1 scf7180002754780 99.48 True relocation, scaffold gap is present, inconsistency = -34663 2026921 2036085 131305 122139 CM091753.1 scf7180002754780 99.59 True translocation, scaffold gap is present 2049040 2050702 132988 131326 CM091764.1 scf7180002754780 100.0 True fake: scaffold gap size wrong estimation (local) 2047967 2048543 135578 135002 CM091764.1 scf7180002754780 99.83 True fake: scaffold gap size wrong estimation (local) 2046607 2047604 136939 135942 CM091764.1 scf7180002754780 95.69 True translocation, scaffold gap is present 2020086 2026898 148695 141880 CM091753.1 scf7180002754780 99.75 True CONTIG scf7180002754780 148695 misassembled 6413355 6441711 1 28320 CM091760.1 scf7180002754781 99.66 True relocation, scaffold gap is present, inconsistency = -19333 6441774 6510619 47716 116744 CM091760.1 scf7180002754781 99.14 True relocation, scaffold gap is present, inconsistency = -27820 6511001 6517647 144946 151582 CM091760.1 scf7180002754781 99.29 True fake: scaffold gap size wrong estimation (local) 6517633 6549842 158085 190262 CM091760.1 scf7180002754781 99.15 True fake: scaffold gap size wrong estimation (local) 6549972 6661687 190351 302277 CM091760.1 scf7180002754781 99.27 True relocation, scaffold gap is present, inconsistency = -56607 6661730 6680204 358927 377405 CM091760.1 scf7180002754781 99.84 True fake: scaffold gap size wrong estimation (local) 6680245 6683605 378455 381815 CM091760.1 scf7180002754781 99.94 True fake: scaffold gap size wrong estimation (local) 6683691 6694364 384801 395325 CM091760.1 scf7180002754781 97.99 True fake: scaffold gap size wrong estimation (local) 6694731 6719012 395925 420168 CM091760.1 scf7180002754781 99.38 True relocation, scaffold gap is present, inconsistency = -18473 6719772 6739611 439401 459253 CM091760.1 scf7180002754781 99.65 True CONTIG scf7180002754781 463697 misassembled 10139855 10146943 16252 23344 CM091765.1 scf7180002754782 99.87 True relocation, scaffold gap is present, inconsistency = -10696 10147247 10148199 34344 35296 CM091765.1 scf7180002754782 99.9 True fake: scaffold gap size wrong estimation (local) 10149190 10170077 35839 56579 CM091765.1 scf7180002754782 99.19 True relocation, inconsistency = 177152 9936330 9966236 92286 62381 CM091765.1 scf7180002754782 99.96 True CONTIG scf7180002754782 138474 misassembled 11379969 11408201 28248 1 CM091760.1 scf7180002754783 99.47 True fake: scaffold gap size wrong estimation (extensive) 11360435 11379526 56205 37101 CM091760.1 scf7180002754783 99.33 True relocation, scaffold gap is present, inconsistency = -19143 11308810 11360137 127049 75646 CM091760.1 scf7180002754783 99.49 True indel: indel (<= 5bp) 11263321 11308724 172553 127137 CM091760.1 scf7180002754783 99.29 True relocation, scaffold gap is present, inconsistency = -23417 11253203 11263291 206091 196000 CM091760.1 scf7180002754783 99.2 True fake: scaffold gap size wrong estimation (local) 11230515 11252672 228846 206679 CM091760.1 scf7180002754783 99.67 True relocation, scaffold gap is present, inconsistency = -22404 11225633 11230496 256151 251269 CM091760.1 scf7180002754783 99.57 True CONTIG scf7180002754783 256154 misassembled 17794883 17831217 36356 85 CM091751.1 scf7180002754784 99.58 True local misassembly 17791658 17794601 39340 36402 CM091751.1 scf7180002754784 99.73 True indel: indel (> 5bp) 17776491 17791551 54523 39469 CM091751.1 scf7180002754784 99.91 True relocation, scaffold gap is present, inconsistency = -43538 17762392 17776469 112160 98083 CM091751.1 scf7180002754784 99.97 True relocation, scaffold gap is present, inconsistency = -14040 17733972 17762725 153909 125867 CM091751.1 scf7180002754784 97.39 True translocation 6100979 6114928 167811 153972 CM091754.1 scf7180002754784 99.83 True relocation, scaffold gap is present, inconsistency = -26006 6096280 6101013 198489 193783 CM091754.1 scf7180002754784 99.13 True CONTIG scf7180002754784 198489 misassembled 14141406 14141913 157 664 CM091752.1 scf7180002754785 100.0 True translocation 2393346 2441447 665 48513 CM091754.1 scf7180002754785 97.42 True fake: scaffold gap size wrong estimation (local) 2441449 2442282 52863 53696 CM091754.1 scf7180002754785 99.52 True indel: indel (<= 5bp) 2442510 2443025 53929 54444 CM091754.1 scf7180002754785 99.61 True indel: indel (<= 5bp) 2443514 2444219 54938 55643 CM091754.1 scf7180002754785 98.73 True indel: indel (> 5bp) 2444560 2445226 55975 56641 CM091754.1 scf7180002754785 98.8 True local misassembly 2447620 2448120 59028 59528 CM091754.1 scf7180002754785 97.8 True local misassembly 2448724 2449593 60120 60989 CM091754.1 scf7180002754785 98.97 True indel: indel (<= 5bp) 2449595 2450596 60990 61991 CM091754.1 scf7180002754785 99.7 True fake: scaffold gap size wrong estimation (local) 2454024 2454938 64705 65619 CM091754.1 scf7180002754785 99.45 True local misassembly 2456269 2456940 66969 67640 CM091754.1 scf7180002754785 98.81 True fake: scaffold gap size wrong estimation (local) 2457434 2458541 67968 69075 CM091754.1 scf7180002754785 99.37 True indel: indel (<= 5bp) 2458828 2460352 69365 70889 CM091754.1 scf7180002754785 99.15 True local misassembly 2460912 2461807 70954 71849 CM091754.1 scf7180002754785 98.44 True indel: indel (<= 5bp) 2461809 2462433 71850 72474 CM091754.1 scf7180002754785 99.68 True indel: indel (<= 5bp) 2462434 2463231 72476 73273 CM091754.1 scf7180002754785 99.75 True local misassembly 2463970 2464642 74015 74687 CM091754.1 scf7180002754785 99.11 True indel: indel (<= 5bp) 2464646 2465717 74688 75759 CM091754.1 scf7180002754785 99.35 True indel: indel (> 5bp) 2465718 2466838 75771 76891 CM091754.1 scf7180002754785 99.2 True indel: indel (> 5bp) 2467133 2467672 77178 77717 CM091754.1 scf7180002754785 99.63 True indel: indel (<= 5bp) 2468107 2468692 78150 78735 CM091754.1 scf7180002754785 99.66 True indel: stretch of mismatches 2468815 2469549 78858 79592 CM091754.1 scf7180002754785 99.05 True local misassembly 2472297 2474420 79624 81747 CM091754.1 scf7180002754785 99.11 True indel: indel (<= 5bp) 2474581 2475425 81910 82754 CM091754.1 scf7180002754785 98.93 True indel: indel (<= 5bp) 2475923 2476942 83250 84269 CM091754.1 scf7180002754785 99.71 True relocation, scaffold gap is present, inconsistency = -16662 2477521 2483985 101510 107987 CM091754.1 scf7180002754785 99.12 True CONTIG scf7180002754785 108053 misassembled 3215424 3218890 1 3461 CM091752.1 scf7180002754786 99.63 True fake: scaffold gap size wrong estimation (local) 3219937 3221958 4954 6974 CM091752.1 scf7180002754786 99.8 True relocation, scaffold gap is present, inconsistency = 169393 3045374 3049592 12145 7926 CM091752.1 scf7180002754786 99.81 True CONTIG scf7180002754786 12361 misassembled 198230 199290 845 1905 CM091752.1 scf7180002754787 99.53 True fake: scaffold gap size wrong estimation (local) 201876 203081 2561 3766 CM091752.1 scf7180002754787 99.59 True fake: scaffold gap size wrong estimation (local) 203257 205602 5792 8128 CM091752.1 scf7180002754787 98.47 True fake: scaffold gap size wrong estimation (local) 206456 207325 8845 9714 CM091752.1 scf7180002754787 99.77 True fake: scaffold gap size wrong estimation (local) 207971 212783 12028 16876 CM091752.1 scf7180002754787 98.6 True fake: scaffold gap size wrong estimation (local) 213007 214456 17541 18995 CM091752.1 scf7180002754787 98.97 True fake: scaffold gap size wrong estimation (local) 214451 221299 20040 26916 CM091752.1 scf7180002754787 97.88 True fake: scaffold gap size wrong estimation (local) 225158 227362 26937 29140 CM091752.1 scf7180002754787 98.91 True fake: scaffold gap size wrong estimation (local) 227393 229683 30857 33107 CM091752.1 scf7180002754787 95.79 True local misassembly 223376 224459 33108 34189 CM091752.1 scf7180002754787 98.57 True fake: scaffold gap size wrong estimation (local) 229880 234059 35877 40084 CM091752.1 scf7180002754787 98.13 True relocation, scaffold gap is present, inconsistency = -10917 224506 225182 41448 42124 CM091752.1 scf7180002754787 99.7 True CONTIG scf7180002754787 44050 misassembled 10681044 10691604 10526 1 CM091766.1 scf7180002754788 99.18 True fake: scaffold gap size wrong estimation (local) 10623881 10680875 67697 10689 CM091766.1 scf7180002754788 99.57 True indel: indel (> 5bp) 10608257 10623735 82830 67886 CM091766.1 scf7180002754788 95.84 True indel: stretch of mismatches 10604867 10608256 86215 82831 CM091766.1 scf7180002754788 99.32 True fake: scaffold gap size wrong estimation (local) 10593375 10603855 96717 86236 CM091766.1 scf7180002754788 99.77 True relocation, scaffold gap is present, inconsistency = -16283 10604190 10604831 102185 101544 CM091766.1 scf7180002754788 99.53 True fake: scaffold gap size wrong estimation (local) 10525131 10593360 176062 107842 CM091766.1 scf7180002754788 99.6 True fake: not a misassembly (possible transposable element) 6684608 6686980 178435 176063 CM091755.1 scf7180002754788 99.56 True fake: not a misassembly (possible transposable element) 10517863 10525273 185896 178459 CM091766.1 scf7180002754788 99.4 True fake: scaffold gap size wrong estimation (local) 10399135 10517849 311214 192492 CM091766.1 scf7180002754788 99.74 True relocation, scaffold gap is present, inconsistency = -93914 10432617 10433150 371653 371113 CM091766.1 scf7180002754788 100.0 True fake: scaffold gap size wrong estimation (local) 10425745 10426275 378528 377998 CM091766.1 scf7180002754788 100.0 True translocation, scaffold gap is present 14581916 14584822 403578 406488 CM091756.1 scf7180002754788 99.55 True CONTIG scf7180002754788 408431 misassembled 4820831 4825350 1 4520 CM091768.1 scf7180002754789 99.91 True fake: scaffold gap size wrong estimation (local) 4826610 4837193 5090 15869 CM091768.1 scf7180002754789 98.6 True translocation, scaffold gap is present 13290549 13293131 18512 15930 CM091758.1 scf7180002754789 99.92 True indel: indel (<= 5bp) 13289252 13290153 19805 18904 CM091758.1 scf7180002754789 99.89 True indel: indel (<= 5bp) 13287269 13289251 21789 19807 CM091758.1 scf7180002754789 99.95 True indel: indel (<= 5bp) 13285983 13287266 23073 21790 CM091758.1 scf7180002754789 100.0 True indel: indel (<= 5bp) 13281873 13285981 27182 23074 CM091758.1 scf7180002754789 100.0 True indel: indel (<= 5bp) 13278654 13281872 30402 27184 CM091758.1 scf7180002754789 99.97 True indel: indel (<= 5bp) 13277388 13278653 31669 30404 CM091758.1 scf7180002754789 100.0 True indel: indel (<= 5bp) 13276089 13277055 32965 31999 CM091758.1 scf7180002754789 99.9 True indel: indel (<= 5bp) 13275231 13276088 33824 32967 CM091758.1 scf7180002754789 100.0 True indel: indel (<= 5bp) 13272995 13275229 36059 33825 CM091758.1 scf7180002754789 99.91 True indel: indel (<= 5bp) 13268485 13272994 40571 36062 CM091758.1 scf7180002754789 99.98 True indel: indel (<= 5bp) 13266491 13268483 42564 40572 CM091758.1 scf7180002754789 99.85 True indel: indel (<= 5bp) 13265171 13266489 43883 42565 CM091758.1 scf7180002754789 99.92 True indel: indel (<= 5bp) 13263987 13265170 45068 43885 CM091758.1 scf7180002754789 100.0 True indel: indel (<= 5bp) 13260018 13263986 49038 45070 CM091758.1 scf7180002754789 99.85 True indel: indel (<= 5bp) 13256902 13260017 52157 49042 CM091758.1 scf7180002754789 99.94 True indel: indel (<= 5bp) 13255844 13256901 53216 52159 CM091758.1 scf7180002754789 99.53 True indel: indel (<= 5bp) 13254137 13255843 54924 53218 CM091758.1 scf7180002754789 99.94 True local misassembly 13246480 13250446 58891 54925 CM091758.1 scf7180002754789 99.85 True indel: indel (> 5bp) 13245485 13246397 59851 58939 CM091758.1 scf7180002754789 99.67 True CONTIG scf7180002754789 99377 misassembled 11808715 11825460 17048 359 CM091758.1 scf7180002754790 99.31 True translocation, scaffold gap is present 9921855 9930297 31342 22903 CM091765.1 scf7180002754790 99.82 True local misassembly 9916322 9918164 33185 31343 CM091765.1 scf7180002754790 99.78 True fake: scaffold gap size wrong estimation (extensive) 9910653 9915986 48121 42804 CM091765.1 scf7180002754790 99.61 True fake: scaffold gap size wrong estimation (local) 9904832 9910343 54705 49193 CM091765.1 scf7180002754790 99.95 True fake: scaffold gap size wrong estimation (local) 9901214 9904953 63797 60054 CM091765.1 scf7180002754790 99.87 True CONTIG scf7180002754790 63797 misassembled 3988421 4007728 19336 1 CM091754.1 scf7180002754791 99.96 True fake: scaffold gap size wrong estimation (local) 3974338 3988252 33423 19510 CM091754.1 scf7180002754791 99.99 True fake: scaffold gap size wrong estimation (local) 3880026 3974253 128056 33835 CM091754.1 scf7180002754791 99.88 True fake: scaffold gap size wrong estimation (local) 3858402 3878556 148241 128077 CM091754.1 scf7180002754791 99.87 True translocation, scaffold gap is present 5628259 5635584 174024 166693 CM091751.1 scf7180002754791 99.09 True indel: indel (> 5bp) 5600586 5628123 201709 174178 CM091751.1 scf7180002754791 99.38 True relocation, scaffold gap is present, inconsistency = -35076 5577879 5600573 259457 236798 CM091751.1 scf7180002754791 99.24 True fake: scaffold gap size wrong estimation (local) 5513604 5577600 323743 259669 CM091751.1 scf7180002754791 99.41 True indel: indel (> 5bp) 5466206 5513512 371142 323817 CM091751.1 scf7180002754791 99.76 True relocation, scaffold gap is present, inconsistency = -99148 5513973 5514596 422542 421900 CM091751.1 scf7180002754791 100.0 True fake: scaffold gap size wrong estimation (local) 5502558 5503520 434037 433041 CM091751.1 scf7180002754791 98.17 True fake: scaffold gap size wrong estimation (local) 5421336 5466145 515309 470497 CM091751.1 scf7180002754791 99.23 True relocation, scaffold gap is present, inconsistency = -18813 5416752 5421337 538708 534121 CM091751.1 scf7180002754791 99.85 True CONTIG scf7180002754791 538746 misassembled 15926780 16027875 100677 1 CM091758.1 scf7180002754792 99.38 True relocation, scaffold gap is present, inconsistency = -16883 15917003 15926781 126991 117559 CM091758.1 scf7180002754792 96.31 True fake: scaffold gap size wrong estimation (local) 15902795 15916786 142255 128277 CM091758.1 scf7180002754792 99.76 True relocation, scaffold gap is present, inconsistency = -12975 15865831 15902580 192185 155445 CM091758.1 scf7180002754792 99.62 True relocation, scaffold gap is present, inconsistency = -24803 15858312 15864980 224522 217839 CM091758.1 scf7180002754792 99.77 True fake: scaffold gap size wrong estimation (local) 15855056 15857331 227806 225503 CM091758.1 scf7180002754792 98.01 True local misassembly 15736191 15854119 345669 228305 CM091758.1 scf7180002754792 99.14 True indel: stretch of mismatches 15718704 15736190 363150 345670 CM091758.1 scf7180002754792 99.45 True CONTIG scf7180002754792 381912 misassembled 5637590 5661624 24839 1 CM091768.1 scf7180002754793 96.09 True fake: scaffold gap size wrong estimation (local) 5634131 5635542 27052 25641 CM091768.1 scf7180002754793 100.0 True fake: scaffold gap size wrong estimation (local) 5630224 5632774 30408 27858 CM091768.1 scf7180002754793 99.1 True local misassembly 5628733 5629782 31458 30409 CM091768.1 scf7180002754793 99.9 True fake: scaffold gap size wrong estimation (local) 5623412 5627853 36765 32326 CM091768.1 scf7180002754793 99.48 True fake: scaffold gap size wrong estimation (local) 5583427 5623172 76676 36863 CM091768.1 scf7180002754793 99.84 True CONTIG scf7180002754793 76676 correct 1152577 1165150 12589 40 CM091753.1 scf7180002754794 99.61 True local misassembly 1094401 1151854 68401 12590 CM091753.1 scf7180002754794 97.04 True CONTIG scf7180002754794 68401 correct 14093325 14095563 1 2240 CM091758.1 scf7180002754795 99.51 True fake: scaffold gap size wrong estimation (local) 14096512 14119499 2316 24623 CM091758.1 scf7180002754795 95.72 True relocation, scaffold gap is present, inconsistency = -20297 14120209 14123152 45630 48576 CM091758.1 scf7180002754795 99.19 True fake: scaffold gap size wrong estimation (local) 14123220 14124123 51685 52588 CM091758.1 scf7180002754795 99.67 True fake: scaffold gap size wrong estimation (local) 14124124 14124623 52704 53203 CM091758.1 scf7180002754795 99.2 True fake: scaffold gap size wrong estimation (local) 14125048 14126221 53978 55127 CM091758.1 scf7180002754795 97.03 True fake: scaffold gap size wrong estimation (local) 14127062 14127836 55969 56746 CM091758.1 scf7180002754795 98.34 True fake: scaffold gap size wrong estimation (local) 14130157 14131104 59084 60031 CM091758.1 scf7180002754795 99.58 True fake: scaffold gap size wrong estimation (local) 14131105 14135189 60826 64911 CM091758.1 scf7180002754795 98.85 True CONTIG scf7180002754795 64911 misassembled 7272864 7273998 338 1472 CM091767.1 scf7180002754796 98.85 True local misassembly 7274574 7275556 1666 2648 CM091767.1 scf7180002754796 97.66 True indel: indel (<= 5bp) 7275558 7277395 2649 4486 CM091767.1 scf7180002754796 99.62 True indel: indel (<= 5bp) 7277676 7278760 4769 5853 CM091767.1 scf7180002754796 99.91 True fake: scaffold gap size wrong estimation (local) 7279719 7282391 6953 9636 CM091767.1 scf7180002754796 98.39 True fake: scaffold gap size wrong estimation (local) 7282733 7284742 9981 11993 CM091767.1 scf7180002754796 99.4 True fake: scaffold gap size wrong estimation (local) 7285213 7288128 12359 15279 CM091767.1 scf7180002754796 99.01 True fake: scaffold gap size wrong estimation (local) 7288849 7291788 18933 22524 CM091767.1 scf7180002754796 97.75 True CONTIG scf7180002754796 22524 correct 16224210 16226369 731 2886 CM091753.1 scf7180002754797 98.19 True inversion, scaffold gap is present 16227422 16228520 4533 3453 CM091753.1 scf7180002754797 95.0 True fake: scaffold gap size wrong estimation (local) 16219733 16223272 9918 6377 CM091753.1 scf7180002754797 98.96 True CONTIG scf7180002754797 9918 misassembled 1238222 1256132 17974 1 CM091755.1 scf7180002754798 99.58 True fake: not a misassembly (possible transposable element) 256136 257601 17995 19460 CM091761.1 scf7180002754798 100.0 True fake: not a misassembly (possible transposable element) 1233664 1238021 24949 20480 CM091755.1 scf7180002754798 97.25 True translocation 266948 272916 24950 30922 CM091761.1 scf7180002754798 99.78 True relocation, scaffold gap is present, inconsistency = -15394 257621 261240 31021 34639 CM091761.1 scf7180002754798 99.97 True local misassembly 266208 266985 34640 35417 CM091761.1 scf7180002754798 99.49 True fake: scaffold gap size wrong estimation (local) 272933 280710 41208 48985 CM091761.1 scf7180002754798 100.0 True fake: scaffold gap size wrong estimation (local) 281038 282813 49314 51089 CM091761.1 scf7180002754798 99.94 True fake: scaffold gap size wrong estimation (local) 282826 302521 52617 72298 CM091761.1 scf7180002754798 99.34 True local misassembly 302664 328063 72351 97734 CM091761.1 scf7180002754798 99.29 True CONTIG scf7180002754798 97935 misassembled 17395 18644 1250 1 CM091764.1 scf7180002754799 100.0 True relocation, scaffold gap is present, inconsistency = 10278 6240 7096 1271 2127 CM091764.1 scf7180002754799 99.88 True relocation, inconsistency = 48482 55633 57953 2182 4501 CM091764.1 scf7180002754799 99.44 True local misassembly 55631 56169 5081 5619 CM091764.1 scf7180002754799 97.77 True local misassembly 52560 53048 6997 7518 CM091764.1 scf7180002754799 96.22 True fake: scaffold gap size wrong estimation (local) 53171 54771 7645 9243 CM091764.1 scf7180002754799 99.68 True CONTIG scf7180002754799 9243 misassembled 4768188 4783668 231 15734 CM091768.1 scf7180002754800 99.46 True fake: scaffold gap size wrong estimation (local) 4783897 4795237 15963 27302 CM091768.1 scf7180002754800 99.95 True fake: scaffold gap size wrong estimation (local) 4801131 4811776 30420 41057 CM091768.1 scf7180002754800 99.89 True fake: scaffold gap size wrong estimation (local) 4811782 4816399 42200 46778 CM091768.1 scf7180002754800 99.03 True CONTIG scf7180002754800 46778 correct 12635774 12651038 1 15266 CM091759.1 scf7180002754801 99.74 True fake: scaffold gap size wrong estimation (local) 12652203 12652841 20089 20727 CM091759.1 scf7180002754801 98.28 True local misassembly 12653689 12656226 21585 24122 CM091759.1 scf7180002754801 99.8 True fake: scaffold gap size wrong estimation (local) 12658912 12689708 29716 60521 CM091759.1 scf7180002754801 99.66 True relocation, scaffold gap is present, inconsistency = -19482 12690734 12697003 81029 87282 CM091759.1 scf7180002754801 98.46 True fake: scaffold gap size wrong estimation (local) 12697927 12722274 87605 111934 CM091759.1 scf7180002754801 99.31 True CONTIG scf7180002754801 130060 misassembled 10778334 10781874 1 3506 CM091765.1 scf7180002754802 98.94 True fake: scaffold gap size wrong estimation (local) 10782020 10782855 3631 4466 CM091765.1 scf7180002754802 100.0 True indel: indel (<= 5bp) 10782856 10783598 4468 5210 CM091765.1 scf7180002754802 100.0 True local misassembly 10784028 10785258 5211 6441 CM091765.1 scf7180002754802 98.38 True fake: scaffold gap size wrong estimation (local) 10785141 10796737 7575 19180 CM091765.1 scf7180002754802 99.95 True fake: scaffold gap size wrong estimation (local) 10797095 10803617 19382 26208 CM091765.1 scf7180002754802 95.77 True CONTIG scf7180002754802 32592 correct 2593785 2606131 12351 1 CM091763.1 scf7180002754803 99.78 True indel: indel (> 5bp) 2576146 2593678 30018 12482 CM091763.1 scf7180002754803 99.75 True fake: scaffold gap size wrong estimation (extensive) 2546268 2576144 69085 39261 CM091763.1 scf7180002754803 99.49 True translocation, scaffold gap is present 9583562 9590916 69112 76460 CM091759.1 scf7180002754803 99.77 True translocation, scaffold gap is present 2531779 2546337 91043 76481 CM091763.1 scf7180002754803 99.68 True translocation, scaffold gap is present 9590939 9611763 94052 114885 CM091759.1 scf7180002754803 99.75 True translocation, scaffold gap is present 2503918 2531933 149761 121761 CM091763.1 scf7180002754803 99.48 True translocation, scaffold gap is present 9611807 9634140 161713 184085 CM091759.1 scf7180002754803 99.57 True translocation, scaffold gap is present 2497748 2503935 190293 184112 CM091763.1 scf7180002754803 99.53 True fake: scaffold gap size wrong estimation (local) 2486358 2497705 202443 191089 CM091763.1 scf7180002754803 99.27 True translocation, scaffold gap is present 9634710 9635868 202578 203736 CM091759.1 scf7180002754803 99.91 True indel: indel (<= 5bp) 9635870 9642557 203737 210424 CM091759.1 scf7180002754803 99.82 True indel: indel (<= 5bp) 9642558 9643276 210426 211144 CM091759.1 scf7180002754803 99.17 True fake: scaffold gap size wrong estimation (local) 9643277 9645721 211197 213641 CM091759.1 scf7180002754803 99.71 True fake: scaffold gap size wrong estimation (extensive) 9645866 9650829 221454 226417 CM091759.1 scf7180002754803 99.17 True indel: indel (> 5bp) 9651065 9652292 226659 227886 CM091759.1 scf7180002754803 99.27 True indel: indel (<= 5bp) 9652685 9654364 228276 229955 CM091759.1 scf7180002754803 99.64 True indel: indel (<= 5bp) 9654365 9655890 229957 231482 CM091759.1 scf7180002754803 99.93 True indel: indel (<= 5bp) 9655892 9656647 231483 232238 CM091759.1 scf7180002754803 99.6 True translocation, scaffold gap is present 2469221 2478846 243346 233716 CM091763.1 scf7180002754803 99.71 True translocation, scaffold gap is present 9659320 9663158 245452 249287 CM091759.1 scf7180002754803 99.61 True relocation, scaffold gap is present, inconsistency = -8238 9656609 9659301 250976 253670 CM091759.1 scf7180002754803 99.74 True translocation, scaffold gap is present 2467958 2469301 255207 253864 CM091763.1 scf7180002754803 99.63 True fake: scaffold gap size wrong estimation (local) 2466643 2467957 256662 255348 CM091763.1 scf7180002754803 99.7 True local misassembly 2461560 2463055 258158 256663 CM091763.1 scf7180002754803 99.67 True indel: indel (> 5bp) 2460355 2461203 259371 258523 CM091763.1 scf7180002754803 99.76 True fake: not a misassembly (possible transposable element) 9663943 9668493 259574 264129 CM091759.1 scf7180002754803 99.74 True fake: not a misassembly (possible transposable element) 2458449 2460173 266427 264703 CM091763.1 scf7180002754803 99.94 True indel: indel (<= 5bp) 2457326 2458038 267552 266840 CM091763.1 scf7180002754803 99.72 True fake: not a misassembly (possible transposable element) 9668581 9671996 267574 270991 CM091759.1 scf7180002754803 99.74 True fake: not a misassembly (possible transposable element) 2456228 2457325 273766 272669 CM091763.1 scf7180002754803 100.0 True indel: indel (<= 5bp) 2455299 2456227 274696 273768 CM091763.1 scf7180002754803 99.78 True indel: indel (> 5bp) 2453389 2455221 276622 274790 CM091763.1 scf7180002754803 99.67 True fake: not a misassembly (possible transposable element) 9672121 9676448 276643 280970 CM091759.1 scf7180002754803 99.45 True fake: not a misassembly (possible transposable element) 2440923 2453416 295710 283211 CM091763.1 scf7180002754803 99.77 True translocation, scaffold gap is present 9676434 9679573 297257 300396 CM091759.1 scf7180002754803 99.46 True indel: indel (<= 5bp) 9679677 9681586 300498 302405 CM091759.1 scf7180002754803 99.42 True fake: scaffold gap size wrong estimation (local) 9681550 9685314 307199 310972 CM091759.1 scf7180002754803 99.47 True fake: scaffold gap size wrong estimation (local) 9685435 9690657 311073 316298 CM091759.1 scf7180002754803 99.79 True fake: not a misassembly (possible transposable element) 2436503 2440975 321011 316334 CM091763.1 scf7180002754803 95.99 True fake: not a misassembly (possible transposable element) 9690661 9692197 321098 322660 CM091759.1 scf7180002754803 98.14 True translocation, scaffold gap is present 2332657 2436484 427715 323928 CM091763.1 scf7180002754803 99.7 True relocation, scaffold gap is present, inconsistency = -101534 2377645 2378199 484261 483707 CM091763.1 scf7180002754803 100.0 True fake: scaffold gap size wrong estimation (local) 2309252 2332751 552600 529219 CM091763.1 scf7180002754803 99.06 True fake: scaffold gap size wrong estimation (local) 2290933 2309214 576711 558425 CM091763.1 scf7180002754803 99.87 True fake: scaffold gap size wrong estimation (local) 2251226 2290480 621529 582270 CM091763.1 scf7180002754803 99.8 True relocation, scaffold gap is present, inconsistency = -23830 2251724 2252237 644861 644348 CM091763.1 scf7180002754803 99.78 True fake: scaffold gap size wrong estimation (local) 2195604 2251200 700994 645398 CM091763.1 scf7180002754803 99.83 True CONTIG scf7180002754803 701010 misassembled 4408394 4415474 676 7743 CM091754.1 scf7180002754804 99.58 True inversion, scaffold gap is present 4397351 4408088 18677 7906 CM091754.1 scf7180002754804 99.94 True fake: scaffold gap size wrong estimation (local) 4392703 4397373 27484 22793 CM091754.1 scf7180002754804 99.81 True fake: scaffold gap size wrong estimation (local) 4389987 4391912 32647 30722 CM091754.1 scf7180002754804 99.53 True CONTIG scf7180002754804 34800 misassembled 7663688 7666168 294 2783 CM091767.1 scf7180002754805 97.55 True fake: scaffold gap size wrong estimation (local) 7666776 7673180 3419 9823 CM091767.1 scf7180002754805 99.95 True fake: scaffold gap size wrong estimation (local) 7673987 7676083 16610 18706 CM091767.1 scf7180002754805 100.0 True indel: indel (<= 5bp) 7676523 7678503 19148 21128 CM091767.1 scf7180002754805 99.95 True indel: indel (<= 5bp) 7678504 7679697 21130 22323 CM091767.1 scf7180002754805 99.92 True local misassembly 7680072 7681181 22324 23433 CM091767.1 scf7180002754805 98.11 True fake: scaffold gap size wrong estimation (local) 7682147 7683278 24575 25706 CM091767.1 scf7180002754805 99.91 True CONTIG scf7180002754805 25706 correct 5836414 5899889 48 63810 CM091751.1 scf7180002754806 97.89 True fake: scaffold gap size wrong estimation (local) 5900454 5954285 69302 123133 CM091751.1 scf7180002754806 99.32 True relocation, scaffold gap is present, inconsistency = -47427 5954306 5972645 170581 188900 CM091751.1 scf7180002754806 99.17 True indel: indel (> 5bp) 5972727 5994367 189033 210383 CM091751.1 scf7180002754806 97.58 True fake: scaffold gap size wrong estimation (local) 5995111 6033231 211985 250220 CM091751.1 scf7180002754806 99.09 True indel: indel (> 5bp) 6033370 6100128 250382 317053 CM091751.1 scf7180002754806 99.14 True relocation, scaffold gap is present, inconsistency = -74913 6100134 6104838 391972 396688 CM091751.1 scf7180002754806 99.0 True indel: indel (<= 5bp) 6104919 6107280 396771 399130 CM091751.1 scf7180002754806 99.45 True indel: indel (> 5bp) 6107321 6160129 399186 452034 CM091751.1 scf7180002754806 99.18 True relocation, scaffold gap is present, inconsistency = -45416 6160864 6178107 498185 515512 CM091751.1 scf7180002754806 98.84 True local misassembly 6178825 6210152 516263 547593 CM091751.1 scf7180002754806 99.45 True fake: scaffold gap size wrong estimation (local) 6210201 6245001 550055 584799 CM091751.1 scf7180002754806 99.25 True relocation, scaffold gap is present, inconsistency = -34831 6245028 6268453 619657 642334 CM091751.1 scf7180002754806 96.33 True translocation 13738457 13763188 667062 642335 CM091755.1 scf7180002754806 99.53 True relocation, scaffold gap is present, inconsistency = -37561 13754576 13755408 688587 687672 CM091755.1 scf7180002754806 97.64 True fake: scaffold gap size wrong estimation (local) 13718513 13738456 724687 704720 CM091755.1 scf7180002754806 99.64 True CONTIG scf7180002754806 724687 misassembled 5226116 5269210 43226 225 CM091767.1 scf7180002754807 99.24 True relocation, scaffold gap is present, inconsistency = -30733 5209600 5225785 90498 74290 CM091767.1 scf7180002754807 99.06 True relocation, scaffold gap is present, inconsistency = -16232 5193787 5209636 122533 106694 CM091767.1 scf7180002754807 99.24 True fake: scaffold gap size wrong estimation (local) 5189772 5193755 128337 124355 CM091767.1 scf7180002754807 99.42 True indel: indel (> 5bp) 5169149 5189725 148210 128374 CM091767.1 scf7180002754807 95.26 True fake: scaffold gap size wrong estimation (extensive) 5161738 5169137 162758 155447 CM091767.1 scf7180002754807 97.53 True fake: scaffold gap size wrong estimation (local) 5155850 5160979 168059 162929 CM091767.1 scf7180002754807 98.93 True fake: scaffold gap size wrong estimation (local) 5107630 5156025 218274 170220 CM091767.1 scf7180002754807 98.32 True fake: scaffold gap size wrong estimation (local) 5068882 5107626 259874 221247 CM091767.1 scf7180002754807 98.15 True fake: scaffold gap size wrong estimation (extensive) 5033276 5068885 302689 267343 CM091767.1 scf7180002754807 98.27 True indel: indel (> 5bp) 4984850 5033223 351075 302751 CM091767.1 scf7180002754807 98.89 True fake: scaffold gap size wrong estimation (local) 4972806 4979199 362667 356248 CM091767.1 scf7180002754807 98.94 True indel: stretch of mismatches 4971969 4972729 363504 362744 CM091767.1 scf7180002754807 98.55 True CONTIG scf7180002754807 363504 misassembled 15945063 15965902 1 20878 CM091756.1 scf7180002754808 99.62 True fake: scaffold gap size wrong estimation (local) 15966705 16025224 21004 89251 CM091756.1 scf7180002754808 98.84 True fake: scaffold gap size wrong estimation (local) 16025351 16117542 89366 181424 CM091756.1 scf7180002754808 99.63 True fake: scaffold gap size wrong estimation (extensive) 16117784 16131796 188847 202859 CM091756.1 scf7180002754808 99.94 True relocation, scaffold gap is present, inconsistency = -13130 16132150 16133392 216343 217585 CM091756.1 scf7180002754808 99.76 True fake: scaffold gap size wrong estimation (local) 16133560 16144387 218963 229788 CM091756.1 scf7180002754808 99.91 True fake: scaffold gap size wrong estimation (local) 16144526 16177290 234975 267880 CM091756.1 scf7180002754808 99.33 True indel: indel (> 5bp) 16177346 16207755 267966 298359 CM091756.1 scf7180002754808 99.69 True relocation, scaffold gap is present, inconsistency = -62951 16196738 16197338 350293 350893 CM091756.1 scf7180002754808 100.0 True fake: scaffold gap size wrong estimation (local) 16208000 16257980 361539 411551 CM091756.1 scf7180002754808 99.79 True relocation, scaffold gap is present, inconsistency = -16587 16258394 16309586 428552 479747 CM091756.1 scf7180002754808 99.75 True relocation, scaffold gap is present, inconsistency = -51035 16276947 16277693 498143 498889 CM091756.1 scf7180002754808 100.0 True CONTIG scf7180002754808 529109 misassembled 19542460 19546705 84 4310 CM091751.1 scf7180002754809 98.35 True fake: scaffold gap size wrong estimation (local) 19546825 19553662 4577 11217 CM091751.1 scf7180002754809 95.97 True fake: scaffold gap size wrong estimation (local) 19555517 19558476 12592 15857 CM091751.1 scf7180002754809 95.64 True fake: scaffold gap size wrong estimation (local) 19558433 19560841 18243 20653 CM091751.1 scf7180002754809 99.24 True fake: scaffold gap size wrong estimation (local) 19560925 19561511 20746 21332 CM091751.1 scf7180002754809 99.66 True local misassembly 19562055 19563605 21546 23096 CM091751.1 scf7180002754809 99.1 True fake: scaffold gap size wrong estimation (local) 19563888 19564437 23522 24071 CM091751.1 scf7180002754809 99.45 True indel: indel (<= 5bp) 19564439 19565869 24072 25502 CM091751.1 scf7180002754809 99.37 True indel: indel (<= 5bp) 19565986 19567050 25621 26685 CM091751.1 scf7180002754809 99.06 True fake: scaffold gap size wrong estimation (local) 19567827 19568469 27487 28129 CM091751.1 scf7180002754809 100.0 True local misassembly 19569055 19569753 28712 29410 CM091751.1 scf7180002754809 99.57 True fake: scaffold gap size wrong estimation (local) 19570995 19575436 30656 35157 CM091751.1 scf7180002754809 97.62 True fake: scaffold gap size wrong estimation (local) 19576165 19582211 35732 41764 CM091751.1 scf7180002754809 98.38 True fake: scaffold gap size wrong estimation (local) 19582782 19585466 46941 49603 CM091751.1 scf7180002754809 98.4 True fake: scaffold gap size wrong estimation (local) 19586838 19587368 50706 51236 CM091751.1 scf7180002754809 99.81 True indel: indel (> 5bp) 19587375 19588081 51237 51943 CM091751.1 scf7180002754809 99.72 True indel: indel (> 5bp) 19588082 19588673 51965 52556 CM091751.1 scf7180002754809 99.66 True fake: scaffold gap size wrong estimation (local) 19590168 19591612 52961 54405 CM091751.1 scf7180002754809 99.52 True indel: indel (<= 5bp) 19591614 19592838 54406 55630 CM091751.1 scf7180002754809 98.37 True fake: scaffold gap size wrong estimation (local) 19593948 19594735 56776 57563 CM091751.1 scf7180002754809 98.98 True indel: indel (> 5bp) 19594872 19596305 57693 59126 CM091751.1 scf7180002754809 99.3 True local misassembly 19597756 19598423 60562 61229 CM091751.1 scf7180002754809 99.55 True local misassembly 19599796 19600434 61740 62378 CM091751.1 scf7180002754809 99.37 True indel: indel (<= 5bp) 19600436 19601207 62379 63150 CM091751.1 scf7180002754809 99.09 True fake: scaffold gap size wrong estimation (local) 19602068 19602670 65065 65667 CM091751.1 scf7180002754809 99.17 True indel: indel (> 5bp) 19602774 19603379 65753 66358 CM091751.1 scf7180002754809 99.34 True fake: scaffold gap size wrong estimation (local) 19605609 19606148 68630 69169 CM091751.1 scf7180002754809 99.07 True fake: scaffold gap size wrong estimation (local) 19607313 19610403 70322 73412 CM091751.1 scf7180002754809 99.58 True local misassembly 19611645 19612425 73649 74429 CM091751.1 scf7180002754809 99.49 True indel: stretch of mismatches 19612661 19613665 74665 75669 CM091751.1 scf7180002754809 99.4 True fake: scaffold gap size wrong estimation (local) 19614023 19614530 76027 76534 CM091751.1 scf7180002754809 98.62 True indel: indel (<= 5bp) 19614879 19615451 76885 77457 CM091751.1 scf7180002754809 100.0 True relocation, inconsistency = 85363 19704911 19707568 84258 81554 CM091751.1 scf7180002754809 97.6 True indel: indel (> 5bp) 19698905 19704833 90286 84352 CM091751.1 scf7180002754809 99.36 True local misassembly 19672931 19697267 114901 90307 CM091751.1 scf7180002754809 98.92 True relocation, scaffold gap is present, inconsistency = 266758 19401478 19406105 114969 119601 CM091751.1 scf7180002754809 98.96 True fake: scaffold gap size wrong estimation (local) 19407521 19409723 124641 126821 CM091751.1 scf7180002754809 97.69 True fake: scaffold gap size wrong estimation (local) 19410756 19422306 127420 139026 CM091751.1 scf7180002754809 97.97 True relocation, scaffold gap is present, inconsistency = 297140 19719480 19741119 139060 160705 CM091751.1 scf7180002754809 99.6 True relocation, scaffold gap is present, inconsistency = -21199 19741772 19779323 182557 219744 CM091751.1 scf7180002754809 98.55 True CONTIG scf7180002754809 243391 misassembled 4342100 4370280 28145 1 CM091767.1 scf7180002754810 99.06 True indel: indel (> 5bp) 4318095 4341910 52159 28325 CM091767.1 scf7180002754810 99.37 True relocation, scaffold gap is present, inconsistency = -19582 4306121 4318029 83193 71807 CM091767.1 scf7180002754810 95.21 True indel: stretch of mismatches 4147001 4306120 242380 83194 CM091767.1 scf7180002754810 99.57 True indel: indel (> 5bp) 4119367 4146839 270004 242505 CM091767.1 scf7180002754810 99.52 True relocation, scaffold gap is present, inconsistency = -14495 4117361 4119052 286506 284814 CM091767.1 scf7180002754810 99.23 True fake: scaffold gap size wrong estimation (local) 4087765 4117251 316090 286616 CM091767.1 scf7180002754810 99.67 True indel: indel (> 5bp) 4046357 4087668 356586 316214 CM091767.1 scf7180002754810 96.62 True fake: scaffold gap size wrong estimation (local) 4044315 4045975 364926 363266 CM091767.1 scf7180002754810 99.82 True indel: indel (<= 5bp) 4043405 4044024 365833 365214 CM091767.1 scf7180002754810 99.68 True fake: scaffold gap size wrong estimation (local) 4042063 4043404 367196 365855 CM091767.1 scf7180002754810 97.02 True indel: indel (<= 5bp) 4041368 4042060 367889 367197 CM091767.1 scf7180002754810 99.42 True indel: indel (<= 5bp) 4040346 4041363 368907 367890 CM091767.1 scf7180002754810 98.43 True indel: indel (> 5bp) 4039310 4040345 369955 368920 CM091767.1 scf7180002754810 99.52 True indel: indel (<= 5bp) 4038637 4039309 370629 369957 CM091767.1 scf7180002754810 98.66 True indel: indel (<= 5bp) 4037082 4038473 372182 370791 CM091767.1 scf7180002754810 99.57 True indel: indel (> 5bp) 4036005 4036691 373276 372590 CM091767.1 scf7180002754810 99.42 True local misassembly 4034325 4035311 374955 373969 CM091767.1 scf7180002754810 99.39 True local misassembly 4032892 4033767 375831 374956 CM091767.1 scf7180002754810 99.77 True indel: indel (<= 5bp) 4031069 4032890 377653 375832 CM091767.1 scf7180002754810 99.29 True indel: indel (<= 5bp) 4029492 4031065 379227 377654 CM091767.1 scf7180002754810 99.68 True local misassembly 4027509 4028869 381216 379856 CM091767.1 scf7180002754810 99.34 True indel: indel (<= 5bp) 4026707 4027352 382020 381375 CM091767.1 scf7180002754810 99.85 True local misassembly 4023564 4024883 383819 382500 CM091767.1 scf7180002754810 99.47 True fake: scaffold gap size wrong estimation (local) 4019441 4021922 387964 385483 CM091767.1 scf7180002754810 99.92 True indel: indel (<= 5bp) 4018808 4019440 388601 387969 CM091767.1 scf7180002754810 99.84 True indel: indel (<= 5bp) 4017866 4018806 389542 388602 CM091767.1 scf7180002754810 99.79 True local misassembly 4014543 4015606 392871 391808 CM091767.1 scf7180002754810 99.62 True indel: indel (> 5bp) 4013489 4014148 393932 393273 CM091767.1 scf7180002754810 99.7 True local misassembly 4011235 4012374 396187 395048 CM091767.1 scf7180002754810 99.12 True indel: indel (<= 5bp) 4010326 4011234 397097 396189 CM091767.1 scf7180002754810 99.67 True local misassembly 4008362 4008893 399068 398537 CM091767.1 scf7180002754810 99.81 True local misassembly 3985642 4007262 421604 400128 CM091767.1 scf7180002754810 98.33 True indel: indel (<= 5bp) 3983700 3985513 423541 421729 CM091767.1 scf7180002754810 98.57 True CONTIG scf7180002754810 423541 misassembled 3932710 3944371 11703 1 CM091759.1 scf7180002754811 99.33 True local misassembly 3917430 3932074 26386 11748 CM091759.1 scf7180002754811 99.43 True fake: scaffold gap size wrong estimation (local) 3898741 3917464 45407 27192 CM091759.1 scf7180002754811 95.67 True fake: scaffold gap size wrong estimation (local) 3885080 3897485 57857 45458 CM091759.1 scf7180002754811 99.12 True fake: scaffold gap size wrong estimation (extensive) 3856065 3884801 95867 67633 CM091759.1 scf7180002754811 97.3 True relocation, scaffold gap is present, inconsistency = -10768 3852990 3855973 109694 106727 CM091759.1 scf7180002754811 98.29 True fake: scaffold gap size wrong estimation (local) 3842757 3852077 119099 109775 CM091759.1 scf7180002754811 98.82 True indel: indel (> 5bp) 3812671 3842622 149201 119205 CM091759.1 scf7180002754811 99.2 True CONTIG scf7180002754811 149201 misassembled 12224163 12267143 43011 1 CM091757.1 scf7180002754812 98.36 True relocation, scaffold gap is present, inconsistency = -29270 12222789 12223571 73655 72873 CM091757.1 scf7180002754812 99.74 True fake: scaffold gap size wrong estimation (local) 12140105 12221942 155786 73936 CM091757.1 scf7180002754812 99.48 True relocation, scaffold gap is present, inconsistency = -81243 12091846 12140054 285310 237080 CM091757.1 scf7180002754812 99.71 True indel: indel (> 5bp) 12070388 12091815 306850 285359 CM091757.1 scf7180002754812 99.08 True relocation, scaffold gap is present, inconsistency = -47336 12031860 12070080 392662 354494 CM091757.1 scf7180002754812 99.03 True relocation, scaffold gap is present, inconsistency = -24018 12025497 12032155 423069 416385 CM091757.1 scf7180002754812 98.88 True fake: scaffold gap size wrong estimation (local) 11981229 12025470 467251 424260 CM091757.1 scf7180002754812 96.12 True CONTIG scf7180002754812 467262 misassembled 10657325 10663113 5749 1 CM091755.1 scf7180002754813 98.96 True fake: scaffold gap size wrong estimation (local) 10652922 10656378 10448 6947 CM091755.1 scf7180002754813 98.66 True fake: scaffold gap size wrong estimation (local) 10650523 10652776 12724 10469 CM091755.1 scf7180002754813 99.16 True fake: scaffold gap size wrong estimation (local) 10614497 10650511 50286 14396 CM091755.1 scf7180002754813 98.66 True fake: scaffold gap size wrong estimation (local) 10582687 10614468 86861 55020 CM091755.1 scf7180002754813 99.49 True relocation, scaffold gap is present, inconsistency = -11915 10581150 10581851 100313 99612 CM091755.1 scf7180002754813 99.72 True local misassembly 10579752 10580308 101711 101155 CM091755.1 scf7180002754813 98.2 True local misassembly 10577855 10579496 103353 101712 CM091755.1 scf7180002754813 99.82 True indel: indel (> 5bp) 10575489 10577453 105659 103693 CM091755.1 scf7180002754813 99.59 True fake: scaffold gap size wrong estimation (local) 10560655 10575327 120385 105820 CM091755.1 scf7180002754813 98.42 True fake: scaffold gap size wrong estimation (local) 10557419 10558339 128506 127586 CM091755.1 scf7180002754813 99.78 True indel: indel (<= 5bp) 10556493 10557418 129433 128508 CM091755.1 scf7180002754813 99.78 True fake: scaffold gap size wrong estimation (local) 10554755 10555440 130612 129927 CM091755.1 scf7180002754813 100.0 True fake: scaffold gap size wrong estimation (local) 10488736 10554278 197487 131820 CM091755.1 scf7180002754813 99.57 True translocation, scaffold gap is present 14561253 14574287 204866 217901 CM091753.1 scf7180002754813 99.39 True translocation, scaffold gap is present 10481049 10488658 228395 220762 CM091755.1 scf7180002754813 99.46 True fake: scaffold gap size wrong estimation (extensive) 10470819 10471905 230830 229742 CM091755.1 scf7180002754813 99.82 True translocation, scaffold gap is present 14583164 14592244 231107 240193 CM091753.1 scf7180002754813 99.35 True translocation, scaffold gap is present 10467760 10470087 242765 240437 CM091755.1 scf7180002754813 99.61 True fake: scaffold gap size wrong estimation (local) 10466209 10467505 247162 245866 CM091755.1 scf7180002754813 99.07 True relocation, scaffold gap is present, inconsistency = -16588 10471861 10480921 258098 249038 CM091755.1 scf7180002754813 99.69 True translocation, scaffold gap is present 14574838 14583227 259301 267708 CM091753.1 scf7180002754813 99.27 True fake: scaffold gap size wrong estimation (extensive) 14592481 14602887 269443 279871 CM091753.1 scf7180002754813 99.34 True indel: indel (> 5bp) 14602930 14626420 279962 303493 CM091753.1 scf7180002754813 98.62 True fake: scaffold gap size wrong estimation (local) 14626552 14636764 303611 313804 CM091753.1 scf7180002754813 99.08 True fake: scaffold gap size wrong estimation (local) 14637171 14674031 314493 351260 CM091753.1 scf7180002754813 98.16 True fake: scaffold gap size wrong estimation (local) 14674252 14713133 351439 390332 CM091753.1 scf7180002754813 99.44 True CONTIG scf7180002754813 390332 misassembled 10280123 10284928 4805 1 CM091765.1 scf7180002754814 99.75 True fake: scaffold gap size wrong estimation (local) 10263961 10279986 21003 4942 CM091765.1 scf7180002754814 99.69 True inversion, scaffold gap is present 10247285 10259969 22994 35676 CM091765.1 scf7180002754814 99.8 True inversion 10243500 10244750 42443 41194 CM091765.1 scf7180002754814 99.68 True local misassembly 10235495 10239824 47724 43367 CM091765.1 scf7180002754814 98.9 True CONTIG scf7180002754814 47911 misassembled 3597677 3598989 26 1340 CM091754.1 scf7180002754815 99.16 True indel: indel (> 5bp) 3599050 3599617 1371 1938 CM091754.1 scf7180002754815 99.82 True indel: indel (<= 5bp) 3599618 3600223 1940 2545 CM091754.1 scf7180002754815 99.5 True indel: indel (<= 5bp) 3600686 3601218 3011 3543 CM091754.1 scf7180002754815 99.81 True indel: indel (<= 5bp) 3601219 3602293 3545 4619 CM091754.1 scf7180002754815 99.72 True indel: indel (> 5bp) 3602294 3603444 4644 5794 CM091754.1 scf7180002754815 99.83 True local misassembly 3603796 3605397 5795 7396 CM091754.1 scf7180002754815 97.94 True fake: scaffold gap size wrong estimation (local) 3606074 3608252 7714 9892 CM091754.1 scf7180002754815 99.5 True indel: indel (> 5bp) 3608271 3609849 9893 11471 CM091754.1 scf7180002754815 99.37 True indel: indel (<= 5bp) 3609854 3610555 11472 12173 CM091754.1 scf7180002754815 98.86 True local misassembly 3611702 3613473 12653 14424 CM091754.1 scf7180002754815 99.32 True local misassembly 3616863 3617432 17844 18413 CM091754.1 scf7180002754815 99.82 True indel: indel (<= 5bp) 3617443 3619071 18419 20047 CM091754.1 scf7180002754815 99.75 True relocation, scaffold gap is present, inconsistency = -10759 3623064 3634390 34799 46124 CM091754.1 scf7180002754815 99.23 True relocation, scaffold gap is present, inconsistency = -13063 3621775 3622859 46572 47656 CM091754.1 scf7180002754815 99.45 True fake: scaffold gap size wrong estimation (local) 3634588 3642786 57624 65823 CM091754.1 scf7180002754815 99.01 True fake: scaffold gap size wrong estimation (local) 3643314 3661270 66351 83932 CM091754.1 scf7180002754815 96.84 True fake: scaffold gap size wrong estimation (extensive) 3661261 3711090 91772 141592 CM091754.1 scf7180002754815 99.79 True relocation, scaffold gap is present, inconsistency = -38460 3711628 3720180 180590 189142 CM091754.1 scf7180002754815 99.81 True indel: indel (> 5bp) 3720212 3731716 189222 200737 CM091754.1 scf7180002754815 99.66 True relocation, scaffold gap is present, inconsistency = -20683 3731739 3764740 221443 255208 CM091754.1 scf7180002754815 98.81 True fake: scaffold gap size wrong estimation (local) 3764915 3795987 255382 285398 CM091754.1 scf7180002754815 96.32 True fake: scaffold gap size wrong estimation (local) 3796192 3835255 285604 323850 CM091754.1 scf7180002754815 97.48 True fake: scaffold gap size wrong estimation (extensive) 3835727 3843640 334280 342192 CM091754.1 scf7180002754815 99.95 True fake: scaffold gap size wrong estimation (local) 3843772 3858165 342347 356734 CM091754.1 scf7180002754815 99.83 True CONTIG scf7180002754815 356734 misassembled 7454714 7461251 17 6556 CM091764.1 scf7180002754816 99.45 True indel: stretch of mismatches 7461627 7462308 6932 7606 CM091764.1 scf7180002754816 97.36 True indel: indel (> 5bp) 7462729 7463391 8007 8669 CM091764.1 scf7180002754816 96.08 True indel: indel (> 5bp) 7463952 7464656 9156 9859 CM091764.1 scf7180002754816 98.58 True fake: scaffold gap size wrong estimation (local) 7471080 7494421 9880 33222 CM091764.1 scf7180002754816 99.58 True relocation, scaffold gap is present, inconsistency = -22735 7494720 7503586 56256 65117 CM091764.1 scf7180002754816 99.79 True fake: scaffold gap size wrong estimation (extensive) 7503726 7513562 73926 83542 CM091764.1 scf7180002754816 97.57 True fake: not a misassembly (possible transposable element) 10355041 10357022 85846 87809 CM091765.1 scf7180002754816 96.83 True fake: not a misassembly (possible transposable element) 7516937 7519140 90118 92326 CM091764.1 scf7180002754816 100.0 True fake: scaffold gap size wrong estimation (local) 7519360 7521463 92546 94649 CM091764.1 scf7180002754816 100.0 True CONTIG scf7180002754816 94649 misassembled 4209696 4211540 1844 1 CM091754.1 scf7180002754817 99.94 True fake: scaffold gap size wrong estimation (local) 4207252 4209136 4597 2693 CM091754.1 scf7180002754817 99.42 True CONTIG scf7180002754817 4597 correct 3319846 3324695 1 4848 CM091759.1 scf7180002754818 99.94 True translocation 9057275 9118260 4849 63804 CM091760.1 scf7180002754818 95.66 True indel: indel (<= 5bp) 9118624 9120015 64165 65554 CM091760.1 scf7180002754818 97.06 True indel: indel (> 5bp) 9120129 9127723 65677 73305 CM091760.1 scf7180002754818 98.29 True fake: scaffold gap size wrong estimation (local) 9127987 9137772 78269 88013 CM091760.1 scf7180002754818 98.69 True CONTIG scf7180002754818 97589 misassembled 1857782 1859944 2166 1 CM091763.1 scf7180002754819 99.68 True fake: scaffold gap size wrong estimation (local) 1842013 1857489 17932 2459 CM091763.1 scf7180002754819 99.54 True fake: scaffold gap size wrong estimation (local) 1840561 1841247 20990 20304 CM091763.1 scf7180002754819 100.0 True fake: scaffold gap size wrong estimation (local) 1835066 1840205 26357 21412 CM091763.1 scf7180002754819 95.96 True local misassembly 1823199 1828714 31861 26358 CM091763.1 scf7180002754819 99.4 True fake: scaffold gap size wrong estimation (extensive) 1812794 1822712 52040 42306 CM091763.1 scf7180002754819 97.87 True fake: scaffold gap size wrong estimation (local) 1807501 1812033 61789 57264 CM091763.1 scf7180002754819 99.29 True fake: scaffold gap size wrong estimation (local) 1800581 1807465 72502 65606 CM091763.1 scf7180002754819 98.91 True indel: indel (> 5bp) 1648622 1800410 224386 72701 CM091763.1 scf7180002754819 99.5 True indel: indel (> 5bp) 1526756 1648592 346296 224459 CM091763.1 scf7180002754819 99.69 True fake: scaffold gap size wrong estimation (local) 1519804 1525928 353464 347337 CM091763.1 scf7180002754819 99.85 True fake: scaffold gap size wrong estimation (local) 1507971 1519780 371415 359506 CM091763.1 scf7180002754819 99.11 True indel: indel (> 5bp) 1492837 1507783 386431 371571 CM091763.1 scf7180002754819 98.72 True fake: scaffold gap size wrong estimation (extensive) 1481967 1492838 404352 393480 CM091763.1 scf7180002754819 99.84 True fake: scaffold gap size wrong estimation (local) 1478917 1481842 407672 404748 CM091763.1 scf7180002754819 99.86 True fake: scaffold gap size wrong estimation (local) 1456752 1479031 432050 410033 CM091763.1 scf7180002754819 98.39 True relocation, scaffold gap is present, inconsistency = -17551 1440383 1456754 465960 449599 CM091763.1 scf7180002754819 99.88 True fake: scaffold gap size wrong estimation (local) 1437395 1440080 468722 466037 CM091763.1 scf7180002754819 99.96 True translocation, scaffold gap is present 8220262 8221880 470361 468743 CM091767.1 scf7180002754819 99.94 True fake: scaffold gap size wrong estimation (local) 8218050 8219255 472487 471282 CM091767.1 scf7180002754819 100.0 True translocation, scaffold gap is present 1427202 1437510 483523 473215 CM091763.1 scf7180002754819 99.95 True fake: scaffold gap size wrong estimation (extensive) 1397912 1426943 522268 493233 CM091763.1 scf7180002754819 99.93 True relocation, scaffold gap is present, inconsistency = -28942 1386633 1398088 562487 551034 CM091763.1 scf7180002754819 99.85 True relocation, scaffold gap is present, inconsistency = 15834 1362215 1363863 569423 571071 CM091763.1 scf7180002754819 99.7 True inversion, scaffold gap is present 1368250 1385041 589108 572511 CM091763.1 scf7180002754819 98.69 True CONTIG scf7180002754819 595512 misassembled 33766 78116 1 43355 CM091758.1 scf7180002754820 97.45 True fake: scaffold gap size wrong estimation (local) 78223 85367 44464 51623 CM091758.1 scf7180002754820 99.44 True fake: scaffold gap size wrong estimation (local) 85495 129882 53409 97867 CM091758.1 scf7180002754820 99.75 True relocation, scaffold gap is present, inconsistency = -40293 119542 120095 127820 128373 CM091758.1 scf7180002754820 100.0 True fake: scaffold gap size wrong estimation (local) 130092 162959 137794 170653 CM091758.1 scf7180002754820 99.66 True relocation, scaffold gap is present, inconsistency = -32982 154019 154533 194695 195231 CM091758.1 scf7180002754820 99.55 True CONTIG scf7180002754820 203645 misassembled 8112344 8174793 1 62514 CM091757.1 scf7180002754821 99.27 True indel: indel (> 5bp) 8174830 8268335 62597 155725 CM091757.1 scf7180002754821 98.75 True indel: indel (> 5bp) 8268377 8285458 155754 172853 CM091757.1 scf7180002754821 99.14 True indel: indel (> 5bp) 8285554 8295160 172965 182583 CM091757.1 scf7180002754821 99.37 True relocation, scaffold gap is present, inconsistency = -16711 8295638 8308232 199772 212366 CM091757.1 scf7180002754821 99.01 True relocation, scaffold gap is present, inconsistency = -12536 8308226 8402027 224896 318755 CM091757.1 scf7180002754821 99.44 True relocation, scaffold gap is present, inconsistency = -90541 8319747 8320290 327016 327558 CM091757.1 scf7180002754821 99.78 True fake: scaffold gap size wrong estimation (local) 8382946 8383474 390541 391069 CM091757.1 scf7180002754821 100.0 True fake: scaffold gap size wrong estimation (local) 8402035 8420679 409643 428252 CM091757.1 scf7180002754821 99.14 True indel: indel (> 5bp) 8420702 8441519 428298 449151 CM091757.1 scf7180002754821 99.07 True relocation, scaffold gap is present, inconsistency = -29068 8441516 8457122 478216 493866 CM091757.1 scf7180002754821 99.14 True fake: scaffold gap size wrong estimation (local) 8457184 8460521 496309 499656 CM091757.1 scf7180002754821 99.16 True indel: indel (> 5bp) 8460586 8600187 499727 639391 CM091757.1 scf7180002754821 99.26 True translocation 886890 887583 639439 640132 CM091754.1 scf7180002754821 99.42 True indel: indel (<= 5bp) 887992 888587 640540 641135 CM091754.1 scf7180002754821 100.0 True local misassembly 889328 890107 641443 642222 CM091754.1 scf7180002754821 99.23 True indel: indel (<= 5bp) 890108 891074 642227 643193 CM091754.1 scf7180002754821 99.48 True local misassembly 891514 892815 643478 644779 CM091754.1 scf7180002754821 99.0 True indel: indel (<= 5bp) 893063 894961 645029 646927 CM091754.1 scf7180002754821 99.74 True indel: indel (<= 5bp) 894963 896976 646928 648941 CM091754.1 scf7180002754821 99.21 True indel: indel (<= 5bp) 896977 897931 648944 649898 CM091754.1 scf7180002754821 99.06 True indel: stretch of mismatches 897999 899199 649966 651166 CM091754.1 scf7180002754821 99.17 True local misassembly 899471 900253 651337 652119 CM091754.1 scf7180002754821 99.62 True indel: indel (<= 5bp) 900254 901338 652121 653205 CM091754.1 scf7180002754821 99.72 True fake: scaffold gap size wrong estimation (local) 902024 906093 654316 658387 CM091754.1 scf7180002754821 99.17 True fake: scaffold gap size wrong estimation (local) 906194 908722 659891 662421 CM091754.1 scf7180002754821 99.05 True CONTIG scf7180002754821 664364 misassembled 7541335 7550908 1 9499 CM091762.1 scf7180002754822 98.05 True fake: scaffold gap size wrong estimation (local) 7551395 7560014 15458 24058 CM091762.1 scf7180002754822 98.68 True fake: scaffold gap size wrong estimation (local) 7560065 7574545 27778 42274 CM091762.1 scf7180002754822 98.89 True indel: indel (> 5bp) 7574557 7588177 42278 55580 CM091762.1 scf7180002754822 96.74 True fake: scaffold gap size wrong estimation (local) 7588169 7590804 58349 60973 CM091762.1 scf7180002754822 98.56 True local misassembly 7591414 7597122 61101 66609 CM091762.1 scf7180002754822 95.49 True CONTIG scf7180002754822 66609 correct 18520661 18521315 663 1 CM091753.1 scf7180002754823 96.53 True unknown 692725 699081 35062 41418 CM091764.1 scf7180002754823 99.81 True unknown 699622 701334 41959 43671 CM091764.1 scf7180002754823 100.0 True unknown 702036 704571 43672 46207 CM091764.1 scf7180002754823 98.97 True unknown 3412117 3425915 60361 46538 CM091760.1 scf7180002754823 99.44 True unknown 705961 711131 60382 65553 CM091764.1 scf7180002754823 99.92 True unknown 3407419 3412077 83350 78695 CM091760.1 scf7180002754823 99.51 True unknown CONTIG scf7180002754823 83350 mis_unaligned 2932533 2934868 1 2331 CM091752.1 scf7180002754824 99.7 True fake: not a misassembly (possible transposable element) 11306887 11310740 6193 2339 CM091765.1 scf7180002754824 99.4 True fake: not a misassembly (possible transposable element) 2935453 2936938 6214 7699 CM091752.1 scf7180002754824 100.0 True translocation, scaffold gap is present 11311902 11313076 13919 12746 CM091765.1 scf7180002754824 99.91 True fake: scaffold gap size wrong estimation (local) 11305973 11306897 19234 18310 CM091765.1 scf7180002754824 100.0 True translocation, scaffold gap is present 2939960 2943874 20241 24154 CM091752.1 scf7180002754824 99.34 True CONTIG scf7180002754824 24155 misassembled 680281 692798 12520 1 CM091764.1 scf7180002754825 99.96 True relocation, scaffold gap is present, inconsistency = 87254 781685 787834 14153 21892 CM091764.1 scf7180002754825 96.48 True relocation, scaffold gap is present, inconsistency = 99807 677271 679346 26500 24424 CM091764.1 scf7180002754825 99.76 True fake: scaffold gap size wrong estimation (local) 668939 677093 34799 26646 CM091764.1 scf7180002754825 99.84 True fake: scaffold gap size wrong estimation (local) 650311 668634 53435 35104 CM091764.1 scf7180002754825 99.92 True fake: scaffold gap size wrong estimation (local) 646991 650319 60502 57173 CM091764.1 scf7180002754825 99.97 True inversion, scaffold gap is present 646008 647089 63755 64836 CM091764.1 scf7180002754825 100.0 True translocation, scaffold gap is present 14287427 14288784 65506 66859 CM091758.1 scf7180002754825 98.53 True translocation, scaffold gap is present 639545 645894 66880 73226 CM091764.1 scf7180002754825 99.92 True inversion, scaffold gap is present 623744 638797 88266 73247 CM091764.1 scf7180002754825 99.67 True relocation, scaffold gap is present, inconsistency = -13734 616630 623718 109122 102026 CM091764.1 scf7180002754825 99.85 True indel: indel (<= 5bp) 611550 616597 114204 109157 CM091764.1 scf7180002754825 99.96 True fake: scaffold gap size wrong estimation (local) 604774 611342 120943 114361 CM091764.1 scf7180002754825 99.92 True translocation, scaffold gap is present 8264990 8299146 120964 155098 CM091765.1 scf7180002754825 99.67 True CONTIG scf7180002754825 177742 misassembled 1052237 1052854 987 370 CM091752.1 scf7180002754826 99.03 True local misassembly 1015049 1051570 37964 1668 CM091752.1 scf7180002754826 98.31 True translocation 6313482 6431090 37965 155520 CM091767.1 scf7180002754826 99.79 True relocation, inconsistency = 36875 6467967 6474343 155522 161885 CM091767.1 scf7180002754826 99.42 True relocation, scaffold gap is present, inconsistency = -55702 6474402 6521094 217646 264298 CM091767.1 scf7180002754826 99.73 True relocation, scaffold gap is present, inconsistency = -46186 6501272 6501856 290662 291246 CM091767.1 scf7180002754826 99.78 True fake: scaffold gap size wrong estimation (local) 6521094 6571713 310464 361065 CM091767.1 scf7180002754826 99.82 True CONTIG scf7180002754826 361065 misassembled 17073 18375 393 1695 CM091757.1 scf7180002754827 100.0 True indel: indel (<= 5bp) 18377 20598 1696 3917 CM091757.1 scf7180002754827 100.0 True fake: scaffold gap size wrong estimation (local) 21278 22173 10420 11315 CM091757.1 scf7180002754827 100.0 True indel: indel (<= 5bp) 22175 25497 11316 14638 CM091757.1 scf7180002754827 99.91 True fake: scaffold gap size wrong estimation (local) 26210 27199 20612 21601 CM091757.1 scf7180002754827 99.39 True fake: scaffold gap size wrong estimation (local) 27615 28877 22024 23286 CM091757.1 scf7180002754827 99.52 True indel: indel (<= 5bp) 28878 30413 23288 24823 CM091757.1 scf7180002754827 99.93 True fake: scaffold gap size wrong estimation (local) 30694 71450 24919 65091 CM091757.1 scf7180002754827 98.13 True fake: scaffold gap size wrong estimation (local) 71461 89184 66992 84808 CM091757.1 scf7180002754827 99.53 True fake: scaffold gap size wrong estimation (local) 89317 101858 84940 97496 CM091757.1 scf7180002754827 99.82 True fake: scaffold gap size wrong estimation (local) 101856 126367 98305 122843 CM091757.1 scf7180002754827 99.64 True relocation, scaffold gap is present, inconsistency = -20641 126387 127616 143504 144722 CM091757.1 scf7180002754827 98.78 True fake: scaffold gap size wrong estimation (local) 127751 137296 144834 154369 CM091757.1 scf7180002754827 99.72 True fake: scaffold gap size wrong estimation (local) 137626 138757 154880 156011 CM091757.1 scf7180002754827 99.82 True indel: indel (<= 5bp) 138759 139359 156012 156612 CM091757.1 scf7180002754827 99.83 True fake: scaffold gap size wrong estimation (local) 140225 140745 156871 157391 CM091757.1 scf7180002754827 100.0 True indel: indel (<= 5bp) 140746 141677 157393 158324 CM091757.1 scf7180002754827 99.79 True indel: indel (<= 5bp) 141678 142180 158326 158828 CM091757.1 scf7180002754827 100.0 True indel: stretch of mismatches 142583 144139 159231 160787 CM091757.1 scf7180002754827 99.94 True fake: scaffold gap size wrong estimation (local) 144644 161157 162387 179052 CM091757.1 scf7180002754827 99.43 True fake: scaffold gap size wrong estimation (local) 161479 191118 180611 210315 CM091757.1 scf7180002754827 99.04 True fake: scaffold gap size wrong estimation (local) 191430 260136 210628 279116 CM091757.1 scf7180002754827 98.74 True fake: scaffold gap size wrong estimation (local) 260435 262396 279178 281164 CM091757.1 scf7180002754827 99.95 True indel: indel (> 5bp) 262445 263203 281220 281978 CM091757.1 scf7180002754827 100.0 True local misassembly 263815 267294 281988 285467 CM091757.1 scf7180002754827 99.43 True indel: indel (> 5bp) 267638 269229 285825 287416 CM091757.1 scf7180002754827 99.94 True fake: scaffold gap size wrong estimation (local) 269630 274227 287738 292306 CM091757.1 scf7180002754827 99.06 True translocation, scaffold gap is present 9298098 9311257 305636 292468 CM091763.1 scf7180002754827 99.45 True indel: indel (> 5bp) 9297071 9297954 306686 305803 CM091763.1 scf7180002754827 99.66 True indel: indel (> 5bp) 9296487 9297070 307279 306696 CM091763.1 scf7180002754827 96.06 True translocation, scaffold gap is present 276795 286864 309017 319184 CM091757.1 scf7180002754827 98.49 True translocation 9293218 9296480 322448 319186 CM091763.1 scf7180002754827 98.65 True indel: indel (<= 5bp) 9291776 9293214 323887 322449 CM091763.1 scf7180002754827 99.65 True indel: indel (> 5bp) 9289992 9291652 325677 324017 CM091763.1 scf7180002754827 99.58 True indel: indel (> 5bp) 9288928 9289983 326733 325678 CM091763.1 scf7180002754827 99.72 True indel: indel (<= 5bp) 9287785 9288671 327880 326994 CM091763.1 scf7180002754827 100.0 True translocation, scaffold gap is present 287036 287580 328196 328740 CM091757.1 scf7180002754827 99.27 True indel: indel (<= 5bp) 287755 288499 328917 329661 CM091757.1 scf7180002754827 99.87 True fake: scaffold gap size wrong estimation (local) 289292 290498 330497 331703 CM091757.1 scf7180002754827 99.5 True indel: indel (> 5bp) 290499 293504 331711 334716 CM091757.1 scf7180002754827 99.33 True indel: indel (<= 5bp) 293505 295416 334718 336629 CM091757.1 scf7180002754827 99.84 True indel: indel (<= 5bp) 295643 298018 336858 339233 CM091757.1 scf7180002754827 99.66 True translocation, scaffold gap is present 9285838 9287350 341238 339726 CM091763.1 scf7180002754827 99.67 True indel: indel (> 5bp) 9285215 9285830 341854 341239 CM091763.1 scf7180002754827 98.86 True fake: not a misassembly (possible transposable element) 298601 299322 343003 343724 CM091757.1 scf7180002754827 100.0 True fake: not a misassembly (possible transposable element) 9282852 9284656 345977 344173 CM091763.1 scf7180002754827 99.67 True fake: not a misassembly (possible transposable element) 299943 301128 346233 347418 CM091757.1 scf7180002754827 99.75 True fake: not a misassembly (possible transposable element) 9281853 9282851 348478 347480 CM091763.1 scf7180002754827 99.2 True indel: indel (<= 5bp) 9280925 9281693 349405 348637 CM091763.1 scf7180002754827 99.22 True indel: indel (<= 5bp) 9279998 9280924 350333 349407 CM091763.1 scf7180002754827 100.0 True indel: indel (> 5bp) 9279460 9279997 350877 350340 CM091763.1 scf7180002754827 99.44 True indel: indel (> 5bp) 9274594 9279136 355735 351193 CM091763.1 scf7180002754827 99.58 True indel: indel (<= 5bp) 9273764 9274588 356560 355736 CM091763.1 scf7180002754827 99.27 True indel: indel (<= 5bp) 9273008 9273763 357317 356562 CM091763.1 scf7180002754827 99.74 True indel: indel (<= 5bp) 9272226 9273007 358100 357319 CM091763.1 scf7180002754827 99.87 True indel: indel (<= 5bp) 9270622 9271997 359709 358334 CM091763.1 scf7180002754827 99.78 True translocation, scaffold gap is present 301139 301785 359730 360376 CM091757.1 scf7180002754827 99.85 True indel: indel (<= 5bp) 301794 303637 360384 362227 CM091757.1 scf7180002754827 99.78 True indel: indel (<= 5bp) 303639 304331 362228 362920 CM091757.1 scf7180002754827 100.0 True indel: indel (<= 5bp) 304332 304938 362922 363528 CM091757.1 scf7180002754827 99.67 True fake: scaffold gap size wrong estimation (local) 306864 311544 365371 370051 CM091757.1 scf7180002754827 99.64 True local misassembly 311888 313664 370126 371902 CM091757.1 scf7180002754827 99.77 True fake: scaffold gap size wrong estimation (local) 314182 315581 376955 378354 CM091757.1 scf7180002754827 100.0 True fake: scaffold gap size wrong estimation (local) 316014 319212 378882 382080 CM091757.1 scf7180002754827 99.84 True indel: indel (<= 5bp) 319214 321619 382081 384486 CM091757.1 scf7180002754827 99.83 True indel: indel (<= 5bp) 321621 323738 384487 386604 CM091757.1 scf7180002754827 100.0 True relocation, scaffold gap is present, inconsistency = -10979 323739 326081 397584 399926 CM091757.1 scf7180002754827 99.45 True fake: scaffold gap size wrong estimation (local) 326708 329247 400614 403153 CM091757.1 scf7180002754827 99.76 True indel: indel (<= 5bp) 329248 330155 403157 404064 CM091757.1 scf7180002754827 100.0 True indel: indel (> 5bp) 330162 331270 404065 405173 CM091757.1 scf7180002754827 97.75 True fake: scaffold gap size wrong estimation (local) 332286 335183 406156 409044 CM091757.1 scf7180002754827 99.38 True fake: scaffold gap size wrong estimation (local) 335878 338902 409666 412710 CM091757.1 scf7180002754827 98.76 True fake: scaffold gap size wrong estimation (local) 338928 340535 412799 414366 CM091757.1 scf7180002754827 97.48 True fake: scaffold gap size wrong estimation (local) 341054 343502 414771 417119 CM091757.1 scf7180002754827 95.54 True indel: indel (<= 5bp) 343614 405332 417233 478929 CM091757.1 scf7180002754827 99.54 True translocation 1705295 1759515 533042 478930 CM091751.1 scf7180002754827 98.8 True relocation, inconsistency = 11184447 12943971 12978213 533051 567361 CM091751.1 scf7180002754827 99.16 True local misassembly 12978947 12998530 568163 587425 CM091751.1 scf7180002754827 96.76 True relocation, scaffold gap is present, inconsistency = -17607 12999701 13084404 606203 689538 CM091751.1 scf7180002754827 97.44 True CONTIG scf7180002754827 689538 misassembled 11095712 11119078 23375 5 CM091755.1 scf7180002754828 99.17 True fake: scaffold gap size wrong estimation (local) 11060506 11095674 58572 23417 CM091755.1 scf7180002754828 99.21 True indel: indel (> 5bp) 11019329 11060472 99866 58642 CM091755.1 scf7180002754828 99.2 True fake: scaffold gap size wrong estimation (local) 11010800 11018850 108022 99962 CM091755.1 scf7180002754828 99.29 True fake: scaffold gap size wrong estimation (local) 10968481 11010397 156905 114922 CM091755.1 scf7180002754828 99.07 True fake: scaffold gap size wrong estimation (local) 10966571 10967402 158626 157795 CM091755.1 scf7180002754828 99.76 True indel: indel (<= 5bp) 10965259 10966568 159936 158627 CM091755.1 scf7180002754828 99.77 True local misassembly 10963621 10964659 161577 160539 CM091755.1 scf7180002754828 99.04 True indel: indel (> 5bp) 10961266 10963163 163945 162048 CM091755.1 scf7180002754828 99.58 True indel: indel (<= 5bp) 10960162 10960936 165048 164274 CM091755.1 scf7180002754828 99.87 True indel: indel (<= 5bp) 10958892 10959707 166319 165504 CM091755.1 scf7180002754828 99.63 True indel: indel (> 5bp) 10958279 10958879 166920 166320 CM091755.1 scf7180002754828 99.83 True indel: indel (<= 5bp) 10957410 10958278 167793 166925 CM091755.1 scf7180002754828 99.88 True fake: scaffold gap size wrong estimation (local) 10954928 10956722 172615 170821 CM091755.1 scf7180002754828 99.55 True indel: indel (<= 5bp) 10953890 10954926 173652 172616 CM091755.1 scf7180002754828 99.71 True indel: indel (<= 5bp) 10952656 10953889 174889 173656 CM091755.1 scf7180002754828 99.68 True fake: scaffold gap size wrong estimation (local) 10889025 10952642 241173 177512 CM091755.1 scf7180002754828 99.19 True local misassembly 10882267 10888660 247677 241282 CM091755.1 scf7180002754828 99.59 True relocation, scaffold gap is present, inconsistency = -28986 10841854 10882256 316919 276674 CM091755.1 scf7180002754828 98.79 True CONTIG scf7180002754828 328260 misassembled 15841534 15860374 18842 1 CM091755.1 scf7180002754829 99.4 True fake: scaffold gap size wrong estimation (local) 15784910 15841417 75439 18940 CM091755.1 scf7180002754829 99.49 True translocation, scaffold gap is present 7134953 7158758 76414 100186 CM091753.1 scf7180002754829 98.99 True translocation, scaffold gap is present 15760580 15784728 144419 120269 CM091755.1 scf7180002754829 99.9 True translocation, scaffold gap is present 7158765 7162618 147634 151491 CM091753.1 scf7180002754829 99.51 True translocation, scaffold gap is present 15681691 15760571 249762 170819 CM091755.1 scf7180002754829 99.88 True fake: scaffold gap size wrong estimation (local) 15662799 15681460 268851 250166 CM091755.1 scf7180002754829 99.9 True fake: scaffold gap size wrong estimation (local) 15661699 15662394 269803 269108 CM091755.1 scf7180002754829 100.0 True indel: indel (<= 5bp) 15660434 15661697 271067 269804 CM091755.1 scf7180002754829 99.84 True indel: indel (<= 5bp) 15659437 15660432 272063 271068 CM091755.1 scf7180002754829 97.39 True local misassembly 15657032 15659261 274293 272064 CM091755.1 scf7180002754829 100.0 True indel: indel (<= 5bp) 15656326 15657030 274998 274294 CM091755.1 scf7180002754829 100.0 True fake: scaffold gap size wrong estimation (local) 15654852 15655642 276043 275253 CM091755.1 scf7180002754829 99.87 True fake: scaffold gap size wrong estimation (local) 15621628 15654801 310271 277058 CM091755.1 scf7180002754829 99.55 True fake: scaffold gap size wrong estimation (local) 15610172 15621484 321937 310416 CM091755.1 scf7180002754829 97.83 True fake: scaffold gap size wrong estimation (local) 15594189 15609791 337848 322238 CM091755.1 scf7180002754829 99.61 True relocation, scaffold gap is present, inconsistency = -15685 15600333 15601232 347426 346490 CM091755.1 scf7180002754829 96.21 True fake: scaffold gap size wrong estimation (local) 15575438 15594396 372379 353361 CM091755.1 scf7180002754829 99.87 True CONTIG scf7180002754829 372379 misassembled 409515 435504 26003 14 CM091753.1 scf7180002754830 99.95 True relocation, scaffold gap is present, inconsistency = -25447 374836 409293 86083 51672 CM091753.1 scf7180002754830 99.64 True fake: scaffold gap size wrong estimation (local) 350351 374465 110278 86307 CM091753.1 scf7180002754830 99.38 True relocation, scaffold gap is present, inconsistency = -18425 299588 350320 179357 128734 CM091753.1 scf7180002754830 99.51 True fake: scaffold gap size wrong estimation (local) 293450 299233 185492 179712 CM091753.1 scf7180002754830 99.95 True fake: scaffold gap size wrong estimation (local) 280015 293298 198920 185644 CM091753.1 scf7180002754830 99.87 True fake: not a misassembly (possible transposable element) 17659268 17660753 198921 200405 CM091751.1 scf7180002754830 98.1 True fake: not a misassembly (possible transposable element) 276532 280094 205564 202002 CM091753.1 scf7180002754830 100.0 True fake: scaffold gap size wrong estimation (local) 273498 275079 209971 208422 CM091753.1 scf7180002754830 95.81 True fake: scaffold gap size wrong estimation (local) 265400 269871 215393 210922 CM091753.1 scf7180002754830 99.98 True relocation, scaffold gap is present, inconsistency = -7710 270361 273089 218140 215414 CM091753.1 scf7180002754830 99.89 True CONTIG scf7180002754830 222322 misassembled 846772 886617 39580 26 CM091754.1 scf7180002754831 97.43 True indel: indel (> 5bp) 841893 846576 44453 39770 CM091754.1 scf7180002754831 99.4 True fake: scaffold gap size wrong estimation (local) 841219 841726 45103 44596 CM091754.1 scf7180002754831 99.8 True indel: indel (<= 5bp) 839947 841217 46374 45104 CM091754.1 scf7180002754831 97.96 True local misassembly 816877 839398 68833 46375 CM091754.1 scf7180002754831 98.83 True relocation, scaffold gap is present, inconsistency = -19177 801941 816331 102614 88556 CM091754.1 scf7180002754831 95.98 True relocation, inconsistency = 64344 725558 737596 114659 102615 CM091754.1 scf7180002754831 98.99 True relocation, scaffold gap is present, inconsistency = -20794 716563 725509 144480 135502 CM091754.1 scf7180002754831 98.43 True fake: scaffold gap size wrong estimation (local) 712204 713370 149083 147917 CM091754.1 scf7180002754831 98.54 True indel: indel (<= 5bp) 710159 712203 151131 149087 CM091754.1 scf7180002754831 99.36 True indel: indel (<= 5bp) 709539 710158 151752 151133 CM091754.1 scf7180002754831 99.03 True fake: scaffold gap size wrong estimation (local) 707108 707941 153583 152750 CM091754.1 scf7180002754831 99.88 True indel: indel (<= 5bp) 706443 707107 154249 153585 CM091754.1 scf7180002754831 99.85 True fake: scaffold gap size wrong estimation (local) 704542 706080 156156 154618 CM091754.1 scf7180002754831 98.9 True indel: indel (<= 5bp) 703906 704540 156791 156157 CM091754.1 scf7180002754831 97.8 True local misassembly 702406 703225 158294 157475 CM091754.1 scf7180002754831 100.0 True indel: indel (<= 5bp) 701084 701905 159614 158793 CM091754.1 scf7180002754831 99.03 True indel: indel (<= 5bp) 700029 701078 160664 159615 CM091754.1 scf7180002754831 99.14 True indel: indel (<= 5bp) 699348 700028 161346 160666 CM091754.1 scf7180002754831 99.41 True local misassembly 697163 698546 163519 162136 CM091754.1 scf7180002754831 98.99 True local misassembly 695686 696477 164311 163520 CM091754.1 scf7180002754831 98.74 True indel: indel (<= 5bp) 695089 695684 164907 164312 CM091754.1 scf7180002754831 99.66 True local misassembly 693081 693833 166910 166158 CM091754.1 scf7180002754831 99.87 True fake: scaffold gap size wrong estimation (local) 662778 692433 196345 167567 CM091754.1 scf7180002754831 95.74 True fake: scaffold gap size wrong estimation (local) 660875 662344 198214 196745 CM091754.1 scf7180002754831 99.86 True indel: indel (<= 5bp) 660324 660874 198766 198216 CM091754.1 scf7180002754831 99.64 True indel: stretch of mismatches 659402 660066 199688 199024 CM091754.1 scf7180002754831 99.55 True indel: indel (<= 5bp) 656848 659401 202243 199690 CM091754.1 scf7180002754831 99.14 True indel: indel (> 5bp) 655123 656491 203955 202587 CM091754.1 scf7180002754831 99.05 True indel: indel (<= 5bp) 654109 655011 204971 204069 CM091754.1 scf7180002754831 99.67 True indel: indel (<= 5bp) 652826 653815 206250 205261 CM091754.1 scf7180002754831 98.99 True local misassembly 650181 651443 207747 206485 CM091754.1 scf7180002754831 99.52 True indel: stretch of mismatches 649105 650133 208823 207795 CM091754.1 scf7180002754831 99.61 True local misassembly 646356 647859 210353 208850 CM091754.1 scf7180002754831 99.27 True indel: indel (<= 5bp) 645222 646352 211484 210354 CM091754.1 scf7180002754831 97.52 True local misassembly 643328 645045 213202 211485 CM091754.1 scf7180002754831 99.53 True local misassembly 640727 642431 215813 214109 CM091754.1 scf7180002754831 99.65 True indel: indel (<= 5bp) 637734 640726 218807 215815 CM091754.1 scf7180002754831 99.26 True indel: indel (> 5bp) 637135 637733 219412 218814 CM091754.1 scf7180002754831 99.83 True local misassembly 635722 636395 220086 219413 CM091754.1 scf7180002754831 98.52 True indel: indel (<= 5bp) 635045 635720 220762 220087 CM091754.1 scf7180002754831 99.41 True indel: indel (> 5bp) 633446 634721 222386 221111 CM091754.1 scf7180002754831 99.14 True fake: scaffold gap size wrong estimation (extensive) 629505 632969 236034 232571 CM091754.1 scf7180002754831 98.9 True fake: scaffold gap size wrong estimation (local) 619873 628725 245132 236275 CM091754.1 scf7180002754831 98.74 True translocation, scaffold gap is present 4920262 4922354 256635 254543 CM091763.1 scf7180002754831 99.95 True translocation, scaffold gap is present 614236 619282 261716 256674 CM091754.1 scf7180002754831 99.17 True translocation, scaffold gap is present 4915384 4920232 268546 263699 CM091763.1 scf7180002754831 99.48 True fake: not a misassembly (possible transposable element) 612614 614013 271638 270223 CM091754.1 scf7180002754831 98.02 True fake: not a misassembly (possible transposable element) 4909757 4915491 277369 271640 CM091763.1 scf7180002754831 98.99 True translocation, scaffold gap is present 609064 612402 281802 278476 CM091754.1 scf7180002754831 98.39 True indel: indel (> 5bp) 607789 608867 283095 282014 CM091754.1 scf7180002754831 99.17 True fake: scaffold gap size wrong estimation (local) 601552 606824 292967 287687 CM091754.1 scf7180002754831 99.38 True translocation, scaffold gap is present 4894564 4909352 307752 292988 CM091763.1 scf7180002754831 98.66 True translocation, scaffold gap is present 584693 600052 323916 308577 CM091754.1 scf7180002754831 99.37 True translocation, scaffold gap is present 4893998 4894572 334418 333844 CM091763.1 scf7180002754831 98.96 True fake: scaffold gap size wrong estimation (local) 4831620 4893869 396825 334621 CM091763.1 scf7180002754831 99.84 True indel: indel (<= 5bp) 4829278 4831578 399166 396866 CM091763.1 scf7180002754831 99.91 True relocation, scaffold gap is present, inconsistency = -63827 4752008 4828887 540265 463384 CM091763.1 scf7180002754831 99.88 True relocation, scaffold gap is present, inconsistency = -68623 4738702 4751911 621704 608985 CM091763.1 scf7180002754831 96.13 True relocation, scaffold gap is present, inconsistency = -9691 4746504 4747100 623593 622997 CM091763.1 scf7180002754831 100.0 True fake: scaffold gap size wrong estimation (local) 4722451 4738431 646889 630914 CM091763.1 scf7180002754831 99.82 True CONTIG scf7180002754831 656116 misassembled 7496777 7517110 20053 1 CM091751.1 scf7180002754832 97.93 True fake: scaffold gap size wrong estimation (extensive) 7447209 7497080 78699 29299 CM091751.1 scf7180002754832 98.32 True indel: indel (<= 5bp) 7440065 7447132 85852 78777 CM091751.1 scf7180002754832 99.14 True relocation, scaffold gap is present, inconsistency = -10715 7436559 7440033 99963 96599 CM091751.1 scf7180002754832 96.17 True fake: scaffold gap size wrong estimation (local) 7432363 7436308 104902 100931 CM091751.1 scf7180002754832 98.92 True indel: indel (> 5bp) 7388828 7431938 148486 105335 CM091751.1 scf7180002754832 99.36 True fake: scaffold gap size wrong estimation (local) 7377257 7388694 160087 148628 CM091751.1 scf7180002754832 99.34 True translocation, scaffold gap is present 9825297 9838101 172922 160120 CM091766.1 scf7180002754832 99.93 True fake: scaffold gap size wrong estimation (extensive) 9823608 9824821 183072 181859 CM091766.1 scf7180002754832 100.0 True fake: scaffold gap size wrong estimation (local) 9712972 9823414 293743 183266 CM091766.1 scf7180002754832 99.8 True relocation, scaffold gap is present, inconsistency = -83972 9710225 9711942 380460 378745 CM091766.1 scf7180002754832 98.55 True CONTIG scf7180002754832 381071 misassembled 7863486 7864550 1051 1 CM091767.1 scf7180002754833 98.31 True fake: scaffold gap size wrong estimation (local) 7861241 7863365 3268 1141 CM091767.1 scf7180002754833 99.72 True translocation, scaffold gap is present 3946308 3954815 11800 3289 CM091764.1 scf7180002754833 99.73 True translocation, scaffold gap is present 7855551 7861244 17865 12384 CM091767.1 scf7180002754833 96.16 True fake: scaffold gap size wrong estimation (local) 7852943 7855643 23591 20890 CM091767.1 scf7180002754833 99.89 True translocation 3926422 3944754 41926 23592 CM091764.1 scf7180002754833 99.45 True fake: scaffold gap size wrong estimation (local) 3905675 3924918 65272 46039 CM091764.1 scf7180002754833 99.29 True relocation, scaffold gap is present, inconsistency = -18239 3903682 3905145 85505 84041 CM091764.1 scf7180002754833 99.52 True fake: scaffold gap size wrong estimation (local) 3796673 3902227 191463 85949 CM091764.1 scf7180002754833 99.44 True relocation, scaffold gap is present, inconsistency = -54723 3773488 3796467 269369 246392 CM091764.1 scf7180002754833 99.64 True relocation, scaffold gap is present, inconsistency = -23015 3795446 3796213 270426 269659 CM091764.1 scf7180002754833 97.66 True CONTIG scf7180002754833 292620 misassembled 19071566 19073348 3359 1577 CM091751.1 scf7180002754834 99.16 True indel: indel (<= 5bp) 19070949 19071527 3974 3396 CM091751.1 scf7180002754834 98.79 True fake: scaffold gap size wrong estimation (local) 19068482 19069202 6220 5500 CM091751.1 scf7180002754834 99.03 True fake: scaffold gap size wrong estimation (local) 19062770 19067667 12982 7993 CM091751.1 scf7180002754834 96.99 True local misassembly 19061283 19061865 13565 12983 CM091751.1 scf7180002754834 98.88 True indel: indel (<= 5bp) 19060431 19061282 14418 13567 CM091751.1 scf7180002754834 99.18 True indel: indel (> 5bp) 19059527 19060316 15332 14543 CM091751.1 scf7180002754834 96.2 True local misassembly 19057434 19058521 16844 15757 CM091751.1 scf7180002754834 99.72 True fake: scaffold gap size wrong estimation (local) 19048786 19052974 21699 17508 CM091751.1 scf7180002754834 99.05 True relocation, scaffold gap is present, inconsistency = -8307 19053055 19056652 25784 22140 CM091751.1 scf7180002754834 97.37 True fake: scaffold gap size wrong estimation (local) 19044665 19048564 29656 25857 CM091751.1 scf7180002754834 95.74 True fake: scaffold gap size wrong estimation (local) 19043048 19043569 34663 34142 CM091751.1 scf7180002754834 99.04 True local misassembly 19041019 19042021 36696 35694 CM091751.1 scf7180002754834 98.01 True fake: scaffold gap size wrong estimation (local) 19039414 19040093 38046 37368 CM091751.1 scf7180002754834 98.82 True fake: scaffold gap size wrong estimation (local) 19035795 19038744 41249 38310 CM091751.1 scf7180002754834 98.68 True fake: scaffold gap size wrong estimation (local) 19034598 19035097 44921 44422 CM091751.1 scf7180002754834 98.8 True local misassembly 19033384 19034317 45994 45061 CM091751.1 scf7180002754834 98.82 True indel: indel (<= 5bp) 19032371 19033382 47006 45995 CM091751.1 scf7180002754834 98.72 True CONTIG scf7180002754834 47006 misassembled CONTIG scf7180002754835 513418 unaligned 175196 175871 1836 2511 CM091764.1 scf7180002754836 98.22 True fake: scaffold gap size wrong estimation (local) 176097 179288 2931 6122 CM091764.1 scf7180002754836 99.59 True translocation, scaffold gap is present 4614503 4617606 10085 6982 CM091754.1 scf7180002754836 99.97 True translocation, scaffold gap is present 3666461 3667430 12870 13839 CM091768.1 scf7180002754836 99.59 True translocation, scaffold gap is present 181878 189473 13860 21442 CM091764.1 scf7180002754836 99.78 True CONTIG scf7180002754836 21442 misassembled 18779550 18787978 1 8455 CM091751.1 scf7180002754837 98.04 True fake: scaffold gap size wrong estimation (local) 18787879 18792957 8957 14034 CM091751.1 scf7180002754837 98.88 True fake: scaffold gap size wrong estimation (local) 18793745 18808936 14807 29699 CM091751.1 scf7180002754837 97.07 True translocation, scaffold gap is present 223931 224481 33332 33882 CM091764.1 scf7180002754837 95.83 True local misassembly 225307 229337 33883 37913 CM091764.1 scf7180002754837 99.38 True indel: indel (<= 5bp) 229342 230516 37914 39088 CM091764.1 scf7180002754837 100.0 True indel: indel (<= 5bp) 230541 232629 39117 41205 CM091764.1 scf7180002754837 100.0 True indel: indel (<= 5bp) 232630 237841 41209 46420 CM091764.1 scf7180002754837 99.9 True relocation, scaffold gap is present, inconsistency = -12107 225760 226784 46446 47457 CM091764.1 scf7180002754837 97.17 True fake: scaffold gap size wrong estimation (local) 238396 241110 58832 61545 CM091764.1 scf7180002754837 99.96 True fake: scaffold gap size wrong estimation (local) 240831 258460 63935 81495 CM091764.1 scf7180002754837 99.48 True local misassembly 259058 285069 82248 108248 CM091764.1 scf7180002754837 99.87 True relocation, scaffold gap is present, inconsistency = -37566 281156 281742 141901 142495 CM091764.1 scf7180002754837 100.0 True fake: scaffold gap size wrong estimation (local) 285800 302100 145576 161874 CM091764.1 scf7180002754837 99.93 True relocation, scaffold gap is present, inconsistency = -16538 302761 309886 179073 186199 CM091764.1 scf7180002754837 99.96 True CONTIG scf7180002754837 186199 misassembled 852706 879756 26163 1 CM091764.1 scf7180002754838 96.49 True fake: scaffold gap size wrong estimation (local) 839227 852510 39646 26307 CM091764.1 scf7180002754838 99.42 True local misassembly 825822 837545 51366 39648 CM091764.1 scf7180002754838 99.79 True fake: scaffold gap size wrong estimation (local) 793314 825299 82796 51499 CM091764.1 scf7180002754838 97.6 True CONTIG scf7180002754838 82930 correct 8982188 8984410 2328 106 CM091767.1 scf7180002754839 98.88 True translocation 5689583 5708164 2578 21194 CM091768.1 scf7180002754839 98.67 True fake: scaffold gap size wrong estimation (local) 5706951 5717365 21215 32050 CM091768.1 scf7180002754839 95.49 True translocation, scaffold gap is present 8534449 8535606 32277 33434 CM091767.1 scf7180002754839 100.0 True translocation, scaffold gap is present 5717585 5728353 40312 51081 CM091768.1 scf7180002754839 99.95 True CONTIG scf7180002754839 51081 misassembled 16212911 16217162 4238 1 CM091753.1 scf7180002754840 98.24 True fake: scaffold gap size wrong estimation (local) 16211110 16212134 6899 5874 CM091753.1 scf7180002754840 99.51 True fake: scaffold gap size wrong estimation (local) 16207335 16209945 9558 6920 CM091753.1 scf7180002754840 98.1 True fake: scaffold gap size wrong estimation (local) 16205916 16207225 10976 9667 CM091753.1 scf7180002754840 99.68 True relocation, inconsistency = -29881 16228159 16235315 18600 11458 CM091753.1 scf7180002754840 97.72 True CONTIG scf7180002754840 18600 misassembled 11035754 11036989 1634 394 CM091765.1 scf7180002754841 99.03 True indel: indel (<= 5bp) 11031807 11035648 5597 1735 CM091765.1 scf7180002754841 99.63 True local misassembly 11029501 11031288 7371 5598 CM091765.1 scf7180002754841 99.11 True fake: scaffold gap size wrong estimation (local) 11027173 11028685 9614 8102 CM091765.1 scf7180002754841 99.93 True translocation 1076667 1132795 65837 9615 CM091751.1 scf7180002754841 99.25 True fake: scaffold gap size wrong estimation (local) 1055521 1076382 86829 65950 CM091751.1 scf7180002754841 99.33 True translocation 5465310 5467082 88620 86830 CM091754.1 scf7180002754841 96.97 True translocation, scaffold gap is present 1009136 1055685 155496 108957 CM091751.1 scf7180002754841 99.22 True relocation, scaffold gap is present, inconsistency = -46171 987456 1009136 223337 201667 CM091751.1 scf7180002754841 98.83 True fake: scaffold gap size wrong estimation (extensive) 935766 987457 281788 230399 CM091751.1 scf7180002754841 98.64 True relocation, scaffold gap is present, inconsistency = -41319 934887 935715 323985 323158 CM091751.1 scf7180002754841 99.16 True local misassembly 905535 934099 352832 324273 CM091751.1 scf7180002754841 99.54 True relocation, scaffold gap is present, inconsistency = -17285 900901 905152 374753 370500 CM091751.1 scf7180002754841 99.95 True fake: scaffold gap size wrong estimation (local) 885309 900909 394520 378917 CM091751.1 scf7180002754841 99.88 True fake: scaffold gap size wrong estimation (local) 850216 885150 429384 394669 CM091751.1 scf7180002754841 98.64 True relocation, scaffold gap is present, inconsistency = -31177 842711 850228 468056 460549 CM091751.1 scf7180002754841 99.41 True indel: indel (<= 5bp) 838392 842660 472370 468103 CM091751.1 scf7180002754841 99.67 True indel: indel (> 5bp) 823090 838275 487627 472435 CM091751.1 scf7180002754841 99.2 True CONTIG scf7180002754841 487663 misassembled 9563564 9580454 1 16891 CM091759.1 scf7180002754842 99.79 True translocation 9848122 9851805 20595 16892 CM091755.1 scf7180002754842 98.57 True translocation, scaffold gap is present 9580329 9583564 25514 28749 CM091759.1 scf7180002754842 99.41 True translocation, scaffold gap is present 9842342 9847948 37905 32288 CM091755.1 scf7180002754842 99.04 True fake: scaffold gap size wrong estimation (local) 9824189 9842129 55855 38115 CM091755.1 scf7180002754842 97.41 True fake: scaffold gap size wrong estimation (local) 9798741 9824145 83997 58592 CM091755.1 scf7180002754842 99.95 True indel: indel (> 5bp) 9758546 9798660 124215 84093 CM091755.1 scf7180002754842 99.73 True relocation, scaffold gap is present, inconsistency = -55696 9739849 9757830 198600 180627 CM091755.1 scf7180002754842 99.58 True fake: scaffold gap size wrong estimation (local) 9717709 9739615 220731 198821 CM091755.1 scf7180002754842 99.84 True relocation, scaffold gap is present, inconsistency = -21819 9692155 9717706 268112 242553 CM091755.1 scf7180002754842 99.8 True relocation, scaffold gap is present, inconsistency = -11741 9603060 9691168 369259 280840 CM091755.1 scf7180002754842 99.26 True relocation, scaffold gap is present, inconsistency = -77887 9649243 9649759 400981 400447 CM091755.1 scf7180002754842 100.0 True fake: scaffold gap size wrong estimation (local) 9639749 9640541 410526 409734 CM091755.1 scf7180002754842 100.0 True fake: scaffold gap size wrong estimation (local) 9593258 9603053 457103 447312 CM091755.1 scf7180002754842 99.28 True indel: indel (<= 5bp) 9579250 9593207 471108 457152 CM091755.1 scf7180002754842 99.42 True indel: indel (> 5bp) 9577747 9579044 472629 471332 CM091755.1 scf7180002754842 99.61 True indel: indel (<= 5bp) 9576641 9577746 473736 472631 CM091755.1 scf7180002754842 99.73 True local misassembly 9574235 9574734 475722 475223 CM091755.1 scf7180002754842 99.8 True indel: indel (<= 5bp) 9572815 9574096 477137 475856 CM091755.1 scf7180002754842 99.45 True relocation, scaffold gap is present, inconsistency = -17887 9567109 9570273 500719 497566 CM091755.1 scf7180002754842 98.36 True translocation 2534335 2535535 500720 501922 CM091757.1 scf7180002754842 99.43 True indel: indel (> 5bp) 2535677 2569728 502104 536008 CM091757.1 scf7180002754842 98.72 True relocation, scaffold gap is present, inconsistency = -20783 2569728 2596983 556791 584075 CM091757.1 scf7180002754842 99.23 True CONTIG scf7180002754842 584105 misassembled 4458699 4462962 4262 1 CM091768.1 scf7180002754843 99.95 True fake: scaffold gap size wrong estimation (local) 4453113 4457583 9126 4656 CM091768.1 scf7180002754843 100.0 True local misassembly 4457825 4458706 10131 9250 CM091768.1 scf7180002754843 99.89 True fake: scaffold gap size wrong estimation (local) 4444112 4451420 22114 14804 CM091768.1 scf7180002754843 99.97 True fake: scaffold gap size wrong estimation (local) 4437532 4440966 26238 22806 CM091768.1 scf7180002754843 99.94 True fake: scaffold gap size wrong estimation (local) 4433686 4437352 32781 29114 CM091768.1 scf7180002754843 99.89 True fake: scaffold gap size wrong estimation (local) 4430984 4433529 35493 32949 CM091768.1 scf7180002754843 99.49 True CONTIG scf7180002754843 35493 correct 14271138 14285515 1 14294 CM091758.1 scf7180002754844 98.64 True local misassembly 14286496 14287262 14893 15659 CM091758.1 scf7180002754844 98.17 True fake: scaffold gap size wrong estimation (local) 14289454 14336398 16317 63314 CM091758.1 scf7180002754844 99.17 True translocation, scaffold gap is present 9876985 9878103 83411 84530 CM091756.1 scf7180002754844 98.84 True fake: scaffold gap size wrong estimation (local) 9878904 9882721 84963 88783 CM091756.1 scf7180002754844 99.53 True fake: not a misassembly (possible transposable element) 14337070 14340918 88819 92678 CM091758.1 scf7180002754844 99.35 True fake: not a misassembly (possible transposable element) 9883330 9885434 95434 97538 CM091756.1 scf7180002754844 98.77 True translocation, scaffold gap is present 14342822 14344549 99712 101439 CM091758.1 scf7180002754844 99.07 True local misassembly 14345272 14346020 101650 102398 CM091758.1 scf7180002754844 99.6 True fake: scaffold gap size wrong estimation (local) 14346790 14354763 107293 115130 CM091758.1 scf7180002754844 97.19 True fake: scaffold gap size wrong estimation (local) 14354168 14356471 120771 123121 CM091758.1 scf7180002754844 96.59 True CONTIG scf7180002754844 123121 misassembled 5764333 5791301 27014 1 CM091768.1 scf7180002754845 99.95 True fake: scaffold gap size wrong estimation (local) 5746881 5762467 43299 28110 CM091768.1 scf7180002754845 97.45 True fake: scaffold gap size wrong estimation (local) 5743074 5745380 50551 48245 CM091768.1 scf7180002754845 100.0 True indel: indel (<= 5bp) 5742140 5743073 51486 50553 CM091768.1 scf7180002754845 97.86 True fake: scaffold gap size wrong estimation (local) 5737045 5740949 56274 52363 CM091768.1 scf7180002754845 100.0 True fake: scaffold gap size wrong estimation (local) 5734224 5737121 60695 57694 CM091768.1 scf7180002754845 97.0 True fake: scaffold gap size wrong estimation (local) 5730824 5733658 64414 61589 CM091768.1 scf7180002754845 98.73 True fake: not a misassembly (possible transposable element) 8176728 8177407 64435 65138 CM091756.1 scf7180002754845 96.64 True fake: not a misassembly (possible transposable element) 5727329 5731493 72094 67932 CM091768.1 scf7180002754845 99.37 True CONTIG scf7180002754845 72094 correct 4751154 4758817 7663 1 CM091754.1 scf7180002754846 99.99 True fake: scaffold gap size wrong estimation (local) 4741248 4750684 19477 10041 CM091754.1 scf7180002754846 99.87 True indel: indel (<= 5bp) 4739580 4741246 21144 19478 CM091754.1 scf7180002754846 100.0 True indel: indel (<= 5bp) 4738790 4739578 21933 21145 CM091754.1 scf7180002754846 100.0 True relocation, scaffold gap is present, inconsistency = -11752 4701707 4738146 70755 34329 CM091754.1 scf7180002754846 99.95 True CONTIG scf7180002754846 70765 misassembled 19782764 19796496 1 13507 CM091751.1 scf7180002754847 96.68 True fake: scaffold gap size wrong estimation (local) 19796820 19798980 19419 21584 CM091751.1 scf7180002754847 98.66 True indel: indel (> 5bp) 19799048 19802380 21678 25009 CM091751.1 scf7180002754847 99.55 True fake: scaffold gap size wrong estimation (local) 19802561 19811054 25189 33702 CM091751.1 scf7180002754847 98.36 True fake: scaffold gap size wrong estimation (local) 19811349 19816583 34183 39552 CM091751.1 scf7180002754847 96.78 True indel: indel (<= 5bp) 19816631 19822764 39605 45750 CM091751.1 scf7180002754847 99.19 True fake: scaffold gap size wrong estimation (local) 19823547 19824635 52023 53111 CM091751.1 scf7180002754847 99.63 True indel: indel (<= 5bp) 19824637 19825724 53112 54199 CM091751.1 scf7180002754847 98.9 True local misassembly 19827629 19828287 55489 56147 CM091751.1 scf7180002754847 99.7 True local misassembly 19829853 19831769 57703 59619 CM091751.1 scf7180002754847 99.27 True local misassembly 19832364 19833304 60213 61153 CM091751.1 scf7180002754847 99.26 True indel: indel (<= 5bp) 19833305 19833899 61159 61753 CM091751.1 scf7180002754847 98.15 True indel: indel (> 5bp) 19834122 19835088 61922 62888 CM091751.1 scf7180002754847 99.59 True local misassembly 19837534 19838075 64992 65533 CM091751.1 scf7180002754847 97.23 True indel: indel (> 5bp) 19838090 19838739 65534 66183 CM091751.1 scf7180002754847 99.69 True fake: scaffold gap size wrong estimation (local) 19839548 19841556 66967 68975 CM091751.1 scf7180002754847 99.0 True local misassembly 19842514 19844117 69905 71508 CM091751.1 scf7180002754847 98.88 True fake: scaffold gap size wrong estimation (local) 19844400 19852220 72897 80716 CM091751.1 scf7180002754847 99.05 True fake: scaffold gap size wrong estimation (local) 19853755 19855709 86545 88543 CM091751.1 scf7180002754847 96.77 True fake: scaffold gap size wrong estimation (local) 19856895 19857856 89791 90752 CM091751.1 scf7180002754847 98.65 True indel: indel (<= 5bp) 19857857 19858443 90755 91341 CM091751.1 scf7180002754847 97.96 True local misassembly 19859788 19861894 91701 93807 CM091751.1 scf7180002754847 99.24 True fake: not a misassembly (possible transposable element) 19861990 19862669 94527 93848 CM091751.1 scf7180002754847 98.97 True fake: not a misassembly (possible transposable element) 19863413 19880802 99884 117018 CM091751.1 scf7180002754847 96.97 True fake: scaffold gap size wrong estimation (local) 19881551 19882791 121660 122924 CM091751.1 scf7180002754847 97.63 True fake: scaffold gap size wrong estimation (local) 19882969 19916718 123073 156075 CM091751.1 scf7180002754847 97.03 True fake: scaffold gap size wrong estimation (local) 19916949 19926348 162314 171606 CM091751.1 scf7180002754847 97.2 True indel: indel (> 5bp) 19926493 19934250 171699 179454 CM091751.1 scf7180002754847 97.57 True indel: indel (> 5bp) 19934416 19938713 179642 183982 CM091751.1 scf7180002754847 97.09 True indel: indel (> 5bp) 19938879 19939805 184141 185067 CM091751.1 scf7180002754847 99.57 True indel: indel (<= 5bp) 19939807 19940554 185068 185815 CM091751.1 scf7180002754847 98.26 True CONTIG scf7180002754847 186246 correct 2350 26021 4802 28487 CM091759.1 scf7180002754848 99.61 True fake: scaffold gap size wrong estimation (local) 46770 75779 45130 74171 CM091759.1 scf7180002754848 99.62 True relocation, scaffold gap is present, inconsistency = -52846 25983 30378 77221 81616 CM091759.1 scf7180002754848 99.86 True fake: scaffold gap size wrong estimation (local) 30893 45288 85408 99827 CM091759.1 scf7180002754848 99.84 True fake: scaffold gap size wrong estimation (extensive) 44076 44596 107503 108022 CM091759.1 scf7180002754848 99.77 True relocation, scaffold gap is present, inconsistency = 22821 75773 129829 116378 170499 CM091759.1 scf7180002754848 99.68 True fake: scaffold gap size wrong estimation (local) 129990 183939 170646 224638 CM091759.1 scf7180002754848 99.46 True translocation, scaffold gap is present 10202250 10208207 224659 230616 CM091765.1 scf7180002754848 99.97 True indel: indel (<= 5bp) 10208208 10209059 230621 231472 CM091765.1 scf7180002754848 100.0 True fake: scaffold gap size wrong estimation (local) 10209335 10210966 231781 233412 CM091765.1 scf7180002754848 99.08 True fake: scaffold gap size wrong estimation (local) 10214736 10219337 235218 239819 CM091765.1 scf7180002754848 99.5 True relocation, scaffold gap is present, inconsistency = 132001 10375789 10376530 265011 264270 CM091765.1 scf7180002754848 99.6 True relocation, scaffold gap is present, inconsistency = 129451 10219845 10222188 289161 291504 CM091765.1 scf7180002754848 99.87 True CONTIG scf7180002754848 291504 misassembled 3001113 3018211 17264 78 CM091751.1 scf7180002754849 98.89 True fake: scaffold gap size wrong estimation (local) 2931984 3000626 86537 17932 CM091751.1 scf7180002754849 99.12 True fake: scaffold gap size wrong estimation (local) 2897457 2931079 126751 93105 CM091751.1 scf7180002754849 99.42 True indel: indel (> 5bp) 2855728 2897321 167019 126877 CM091751.1 scf7180002754849 95.46 True CONTIG scf7180002754849 167019 correct 2168986 2192784 1 23404 CM091764.1 scf7180002754850 98.31 True translocation, scaffold gap is present 9635668 9654902 42655 23425 CM091760.1 scf7180002754850 99.92 True translocation, scaffold gap is present 2193391 2196639 47525 50774 CM091764.1 scf7180002754850 99.97 True fake: scaffold gap size wrong estimation (local) 2196793 2208807 54369 66384 CM091764.1 scf7180002754850 99.95 True translocation, scaffold gap is present 9566681 9635444 143522 74728 CM091760.1 scf7180002754850 99.49 True relocation, scaffold gap is present, inconsistency = -65751 9617100 9617792 158854 158162 CM091760.1 scf7180002754850 100.0 True fake: scaffold gap size wrong estimation (local) 9580554 9581070 195534 194996 CM091760.1 scf7180002754850 99.08 True fake: scaffold gap size wrong estimation (local) 9524863 9566685 251280 209430 CM091760.1 scf7180002754850 99.36 True relocation, scaffold gap is present, inconsistency = -25689 9433236 9524719 368574 277113 CM091760.1 scf7180002754850 99.04 True fake: scaffold gap size wrong estimation (local) 9393740 9433141 408217 368662 CM091760.1 scf7180002754850 98.84 True indel: indel (> 5bp) 9379467 9393689 422555 408297 CM091760.1 scf7180002754850 99.49 True fake: scaffold gap size wrong estimation (local) 9302263 9378962 499895 423433 CM091760.1 scf7180002754850 98.99 True local misassembly 9295264 9302018 506723 499961 CM091760.1 scf7180002754850 99.26 True relocation, scaffold gap is present, inconsistency = -59929 9345298 9345978 516653 515938 CM091760.1 scf7180002754850 97.25 True fake: scaffold gap size wrong estimation (local) 9205101 9295219 656696 566731 CM091760.1 scf7180002754850 98.82 True fake: scaffold gap size wrong estimation (local) 9176710 9204745 691534 663549 CM091760.1 scf7180002754850 99.05 True relocation, scaffold gap is present, inconsistency = -10626 9157409 9176659 721443 702211 CM091760.1 scf7180002754850 99.38 True relocation, scaffold gap is present, inconsistency = -18967 9140957 9157593 756894 740226 CM091760.1 scf7180002754850 98.66 True CONTIG scf7180002754850 756894 misassembled 401671 404193 2528 1 CM091754.1 scf7180002754851 98.93 True fake: scaffold gap size wrong estimation (local) 395747 401478 8534 2745 CM091754.1 scf7180002754851 98.04 True local misassembly 392690 394993 11267 8964 CM091754.1 scf7180002754851 99.74 True local misassembly 391368 392073 12592 11887 CM091754.1 scf7180002754851 98.44 True local misassembly 389366 390379 13879 12866 CM091754.1 scf7180002754851 99.31 True indel: indel (> 5bp) 388121 389237 15143 14027 CM091754.1 scf7180002754851 99.64 True indel: indel (<= 5bp) 387292 387984 15970 15278 CM091754.1 scf7180002754851 99.42 True indel: indel (> 5bp) 386044 386824 17224 16444 CM091754.1 scf7180002754851 99.87 True indel: indel (<= 5bp) 384606 385612 18664 17658 CM091754.1 scf7180002754851 99.4 True indel: indel (<= 5bp) 384059 384584 19209 18684 CM091754.1 scf7180002754851 99.62 True indel: indel (<= 5bp) 382989 383831 20282 19440 CM091754.1 scf7180002754851 99.64 True indel: indel (<= 5bp) 382111 382985 21157 20283 CM091754.1 scf7180002754851 99.43 True indel: indel (<= 5bp) 381182 381855 22089 21416 CM091754.1 scf7180002754851 99.85 True indel: indel (> 5bp) 380532 381172 22752 22112 CM091754.1 scf7180002754851 99.53 True indel: indel (<= 5bp) 378494 380527 24786 22753 CM091754.1 scf7180002754851 99.51 True indel: indel (<= 5bp) 376917 378360 26366 24923 CM091754.1 scf7180002754851 99.79 True indel: indel (<= 5bp) 373910 376916 29374 26368 CM091754.1 scf7180002754851 99.63 True relocation, scaffold gap is present, inconsistency = -12563 349545 373983 66313 41864 CM091754.1 scf7180002754851 98.91 True fake: scaffold gap size wrong estimation (extensive) 258689 349364 166641 75853 CM091754.1 scf7180002754851 98.31 True fake: scaffold gap size wrong estimation (local) 238871 258412 186249 166752 CM091754.1 scf7180002754851 98.25 True fake: scaffold gap size wrong estimation (local) 232218 238671 192920 186472 CM091754.1 scf7180002754851 99.21 True indel: indel (> 5bp) 231047 232185 194097 192960 CM091754.1 scf7180002754851 99.82 True fake: scaffold gap size wrong estimation (local) 213784 230419 210800 194139 CM091754.1 scf7180002754851 99.05 True fake: scaffold gap size wrong estimation (local) 207443 213793 218610 212265 CM091754.1 scf7180002754851 99.17 True indel: indel (<= 5bp) 201488 207346 224578 218706 CM091754.1 scf7180002754851 98.93 True fake: scaffold gap size wrong estimation (local) 196399 201214 229674 224853 CM091754.1 scf7180002754851 99.13 True fake: scaffold gap size wrong estimation (local) 193854 194922 231393 230325 CM091754.1 scf7180002754851 99.63 True fake: scaffold gap size wrong estimation (local) 192400 193676 234375 233099 CM091754.1 scf7180002754851 98.36 True indel: indel (<= 5bp) 191473 192080 235304 234697 CM091754.1 scf7180002754851 99.51 True local misassembly 189206 190403 237568 236371 CM091754.1 scf7180002754851 99.25 True CONTIG scf7180002754851 238206 misassembled 12751998 12769214 1 17181 CM091754.1 scf7180002754852 99.04 True fake: scaffold gap size wrong estimation (local) 12769554 12773437 18508 22394 CM091754.1 scf7180002754852 99.49 True fake: scaffold gap size wrong estimation (local) 12775135 12787000 22415 34243 CM091754.1 scf7180002754852 99.2 True relocation, scaffold gap is present, inconsistency = -16892 12773438 12774370 37573 38483 CM091754.1 scf7180002754852 97.04 True fake: scaffold gap size wrong estimation (local) 12787016 12839780 46172 99250 CM091754.1 scf7180002754852 98.67 True fake: scaffold gap size wrong estimation (local) 12840045 12892371 102074 154282 CM091754.1 scf7180002754852 98.59 True CONTIG scf7180002754852 154282 misassembled CONTIG scf7180002754853 45008 unaligned 3390753 3392473 1735 1 CM091768.1 scf7180002754854 96.43 True fake: scaffold gap size wrong estimation (local) 3388967 3389741 3797 3022 CM091768.1 scf7180002754854 96.4 True relocation, inconsistency = 83355 3276953 3305492 32154 3917 CM091768.1 scf7180002754854 98.33 True CONTIG scf7180002754854 32154 misassembled 3718408 3723643 1 5237 CM091760.1 scf7180002754855 99.18 True local misassembly 3728699 3758159 5238 34607 CM091760.1 scf7180002754855 98.95 True indel: indel (<= 5bp) 3758203 3916491 34653 192903 CM091760.1 scf7180002754855 99.44 True fake: scaffold gap size wrong estimation (local) 3920042 3945782 196545 222253 CM091760.1 scf7180002754855 99.46 True relocation, scaffold gap is present, inconsistency = -24115 3946069 3956620 246655 257229 CM091760.1 scf7180002754855 99.14 True fake: scaffold gap size wrong estimation (local) 3956992 3961441 257559 262011 CM091760.1 scf7180002754855 99.3 True fake: scaffold gap size wrong estimation (local) 3961707 4006999 262333 307706 CM091760.1 scf7180002754855 98.92 True fake: scaffold gap size wrong estimation (local) 4007185 4008958 307885 309659 CM091760.1 scf7180002754855 99.79 True local misassembly 4009597 4034353 309660 334125 CM091760.1 scf7180002754855 98.1 True indel: indel (> 5bp) 4034386 4041946 334172 341735 CM091760.1 scf7180002754855 99.64 True relocation, scaffold gap is present, inconsistency = -12697 4041943 4067894 354429 380060 CM091760.1 scf7180002754855 97.36 True fake: scaffold gap size wrong estimation (local) 4067894 4094493 385807 412364 CM091760.1 scf7180002754855 99.03 True local misassembly 4095096 4097745 412365 415014 CM091760.1 scf7180002754855 99.6 True relocation, scaffold gap is present, inconsistency = -11344 4097748 4113047 426361 441913 CM091760.1 scf7180002754855 97.64 True indel: indel (> 5bp) 4113130 4184038 441974 512295 CM091760.1 scf7180002754855 98.48 True relocation, scaffold gap is present, inconsistency = -30795 4183321 4201205 542373 559547 CM091760.1 scf7180002754855 95.44 True fake: scaffold gap size wrong estimation (local) 4207399 4216384 569507 578470 CM091760.1 scf7180002754855 99.19 True fake: scaffold gap size wrong estimation (extensive) 4216428 4234470 587430 605511 CM091760.1 scf7180002754855 99.21 True CONTIG scf7180002754855 605511 misassembled 3033611 3097185 1 63380 CM091762.1 scf7180002754856 98.83 True fake: scaffold gap size wrong estimation (local) 3097400 3135864 63595 102012 CM091762.1 scf7180002754856 99.23 True fake: scaffold gap size wrong estimation (local) 3136205 3166277 102154 132257 CM091762.1 scf7180002754856 99.49 True relocation, scaffold gap is present, inconsistency = -26747 3166262 3202496 158989 195267 CM091762.1 scf7180002754856 99.53 True CONTIG scf7180002754856 195267 misassembled 374120 388023 1 14380 CM091760.1 scf7180002754857 98.68 True fake: scaffold gap size wrong estimation (local) 387989 474839 14401 100100 CM091760.1 scf7180002754857 98.46 True fake: scaffold gap size wrong estimation (local) 474725 476293 101155 102723 CM091760.1 scf7180002754857 99.94 True translocation 14132104 14168168 102724 138779 CM091757.1 scf7180002754857 99.58 True fake: scaffold gap size wrong estimation (local) 14168273 14188123 138860 158047 CM091757.1 scf7180002754857 96.28 True relocation, scaffold gap is present, inconsistency = -14032 14188102 14330694 172058 313443 CM091757.1 scf7180002754857 98.98 True relocation, scaffold gap is present, inconsistency = -135424 14232197 14233299 350370 351472 CM091757.1 scf7180002754857 99.43 True fake: scaffold gap size wrong estimation (local) 14330720 14381141 448963 499041 CM091757.1 scf7180002754857 99.27 True relocation, scaffold gap is present, inconsistency = -33603 14381150 14426195 532653 577711 CM091757.1 scf7180002754857 99.91 True relocation, scaffold gap is present, inconsistency = -31439 14426365 14442895 609320 625854 CM091757.1 scf7180002754857 99.88 True relocation, scaffold gap is present, inconsistency = -15375 14443272 14448138 641606 646474 CM091757.1 scf7180002754857 99.47 True fake: not a misassembly (possible transposable element) 1952110 1953055 646495 647448 CM091764.1 scf7180002754857 98.11 True fake: not a misassembly (possible transposable element) 14447994 14450381 647872 650290 CM091757.1 scf7180002754857 98.09 True fake: scaffold gap size wrong estimation (local) 14450801 14455223 651539 655960 CM091757.1 scf7180002754857 99.38 True CONTIG scf7180002754857 655990 misassembled 3723694 3728334 3711 8479 CM091763.1 scf7180002754858 96.39 True indel: indel (<= 5bp) 3728433 3759718 8580 39888 CM091763.1 scf7180002754858 99.1 True fake: scaffold gap size wrong estimation (local) 3760445 3796606 40179 76684 CM091763.1 scf7180002754858 98.59 True relocation, scaffold gap is present, inconsistency = -10157 3796658 3807624 86893 97657 CM091763.1 scf7180002754858 97.79 True fake: scaffold gap size wrong estimation (local) 3807526 3850519 103573 146254 CM091763.1 scf7180002754858 98.78 True local misassembly 3851033 3870319 146261 165584 CM091763.1 scf7180002754858 99.33 True relocation, scaffold gap is present, inconsistency = -32991 3870480 3874372 198736 202612 CM091763.1 scf7180002754858 98.82 True fake: scaffold gap size wrong estimation (local) 3875254 3949604 203318 277731 CM091763.1 scf7180002754858 99.24 True relocation, scaffold gap is present, inconsistency = -46785 3950328 3953891 325240 328802 CM091763.1 scf7180002754858 99.52 True fake: scaffold gap size wrong estimation (local) 3954416 3977966 328823 352392 CM091763.1 scf7180002754858 99.75 True relocation, scaffold gap is present, inconsistency = -22678 3978078 3998977 375182 396053 CM091763.1 scf7180002754858 99.63 True fake: scaffold gap size wrong estimation (local) 3999386 4011696 396609 408917 CM091763.1 scf7180002754858 99.94 True relocation, scaffold gap is present, inconsistency = -12300 4011745 4023496 421266 433043 CM091763.1 scf7180002754858 99.67 True fake: scaffold gap size wrong estimation (local) 4024137 4027099 433098 436039 CM091763.1 scf7180002754858 98.35 True fake: scaffold gap size wrong estimation (local) 4027280 4036493 439115 448471 CM091763.1 scf7180002754858 98.36 True fake: scaffold gap size wrong estimation (local) 4036765 4049200 449250 461713 CM091763.1 scf7180002754858 98.77 True relocation, scaffold gap is present, inconsistency = -12474 4049214 4050535 474201 475522 CM091763.1 scf7180002754858 99.55 True indel: indel (<= 5bp) 4050536 4052057 475524 477045 CM091763.1 scf7180002754858 99.34 True fake: scaffold gap size wrong estimation (local) 4052854 4055131 477455 479732 CM091763.1 scf7180002754858 99.65 True indel: indel (<= 5bp) 4055133 4056314 479733 480914 CM091763.1 scf7180002754858 99.07 True indel: indel (> 5bp) 4056535 4057995 481123 482583 CM091763.1 scf7180002754858 99.52 True fake: scaffold gap size wrong estimation (local) 4059122 4076255 486883 504030 CM091763.1 scf7180002754858 99.39 True relocation, scaffold gap is present, inconsistency = -17480 4076505 4081841 521760 527090 CM091763.1 scf7180002754858 99.51 True fake: scaffold gap size wrong estimation (local) 4082292 4085615 530460 533785 CM091763.1 scf7180002754858 99.73 True fake: scaffold gap size wrong estimation (local) 4085622 4108858 537093 560354 CM091763.1 scf7180002754858 99.57 True fake: scaffold gap size wrong estimation (local) 4109514 4222369 561207 673331 CM091763.1 scf7180002754858 98.62 True relocation, scaffold gap is present, inconsistency = -10025 4222387 4313887 683374 774763 CM091763.1 scf7180002754858 98.93 True local misassembly 4314409 4390447 775086 851061 CM091763.1 scf7180002754858 99.19 True relocation, scaffold gap is present, inconsistency = -47622 4390536 4410735 898772 918929 CM091763.1 scf7180002754858 99.19 True relocation, scaffold gap is present, inconsistency = -11011 4412133 4449412 931338 967369 CM091763.1 scf7180002754858 96.22 True fake: scaffold gap size wrong estimation (local) 4449403 4464018 968391 983027 CM091763.1 scf7180002754858 99.44 True relocation, scaffold gap is present, inconsistency = -14220 4464013 4490562 997242 1023380 CM091763.1 scf7180002754858 97.8 True relocation, scaffold gap is present, inconsistency = -12124 4490566 4547275 1035508 1092239 CM091763.1 scf7180002754858 99.48 True relocation, scaffold gap is present, inconsistency = -32124 4547308 4716101 1124396 1293339 CM091763.1 scf7180002754858 99.57 True CONTIG scf7180002754858 1293351 misassembled 10608925 10655874 47004 1 CM091763.1 scf7180002754859 99.57 True fake: scaffold gap size wrong estimation (local) 10599264 10608284 56763 47722 CM091763.1 scf7180002754859 99.42 True fake: scaffold gap size wrong estimation (local) 10556384 10598599 100062 57844 CM091763.1 scf7180002754859 99.3 True fake: scaffold gap size wrong estimation (local) 10417783 10556255 238441 100174 CM091763.1 scf7180002754859 98.87 True translocation 14636083 14639972 242331 238442 CM091755.1 scf7180002754859 99.25 True fake: scaffold gap size wrong estimation (local) 14621809 14636205 257288 242866 CM091755.1 scf7180002754859 99.2 True fake: scaffold gap size wrong estimation (local) 14438011 14621647 448177 264397 CM091755.1 scf7180002754859 99.66 True indel: indel (> 5bp) 14342241 14437719 544011 448488 CM091755.1 scf7180002754859 99.72 True fake: scaffold gap size wrong estimation (local) 14328385 14341988 557873 544264 CM091755.1 scf7180002754859 99.63 True fake: scaffold gap size wrong estimation (extensive) 14296405 14328032 598348 566727 CM091755.1 scf7180002754859 98.12 True fake: scaffold gap size wrong estimation (local) 14294976 14295509 599063 598530 CM091755.1 scf7180002754859 99.25 True indel: indel (> 5bp) 14293847 14294968 600185 599064 CM091755.1 scf7180002754859 99.11 True indel: indel (<= 5bp) 14292986 14293563 601047 600470 CM091755.1 scf7180002754859 99.31 True local misassembly 14291340 14292365 602697 601672 CM091755.1 scf7180002754859 99.81 True fake: scaffold gap size wrong estimation (local) 14290197 14290825 603839 603211 CM091755.1 scf7180002754859 100.0 True indel: indel (<= 5bp) 14289184 14289768 604853 604269 CM091755.1 scf7180002754859 99.49 True local misassembly 14266972 14288694 627068 605362 CM091755.1 scf7180002754859 99.46 True fake: scaffold gap size wrong estimation (local) 14243962 14264159 650144 629775 CM091755.1 scf7180002754859 96.18 True CONTIG scf7180002754859 652083 misassembled 4362613 4364515 1903 1 CM091754.1 scf7180002754860 100.0 True fake: scaffold gap size wrong estimation (local) 4358892 4362237 5580 2235 CM091754.1 scf7180002754860 97.25 True fake: scaffold gap size wrong estimation (local) 4356744 4357956 7082 5870 CM091754.1 scf7180002754860 99.18 True fake: scaffold gap size wrong estimation (local) 4354523 4356458 10284 8349 CM091754.1 scf7180002754860 99.69 True indel: indel (<= 5bp) 4352340 4354423 12471 10388 CM091754.1 scf7180002754860 99.95 True relocation, inconsistency = 427327 4787382 4838291 18103 68848 CM091754.1 scf7180002754860 99.56 True relocation, scaffold gap is present, inconsistency = -34929 4838332 4844390 103818 110123 CM091754.1 scf7180002754860 97.97 True fake: scaffold gap size wrong estimation (local) 4844591 4865258 110324 130989 CM091754.1 scf7180002754860 99.98 True fake: scaffold gap size wrong estimation (extensive) 4865563 4882381 139144 155961 CM091754.1 scf7180002754860 99.99 True fake: scaffold gap size wrong estimation (local) 4882306 4914800 161678 194166 CM091754.1 scf7180002754860 99.97 True indel: indel (> 5bp) 4914931 4931278 194317 210665 CM091754.1 scf7180002754860 99.99 True relocation, scaffold gap is present, inconsistency = -37446 4898931 4899786 215764 216619 CM091754.1 scf7180002754860 100.0 True CONTIG scf7180002754860 247686 misassembled 5178484 5193897 15247 1 CM091766.1 scf7180002754861 95.98 True indel: indel (> 5bp) 5173594 5178400 20110 15314 CM091766.1 scf7180002754861 98.98 True relocation, scaffold gap is present, inconsistency = -10107 5150604 5172422 53200 31389 CM091766.1 scf7180002754861 99.56 True relocation, scaffold gap is present, inconsistency = -22989 5172423 5173568 54371 53225 CM091766.1 scf7180002754861 99.65 True fake: scaffold gap size wrong estimation (local) 5145850 5150618 79644 74871 CM091766.1 scf7180002754861 99.69 True CONTIG scf7180002754861 79796 misassembled 4605998 4610265 4425 160 CM091754.1 scf7180002754862 99.93 True fake: scaffold gap size wrong estimation (local) 4605256 4605894 5160 4522 CM091754.1 scf7180002754862 100.0 True fake: scaffold gap size wrong estimation (local) 4600255 4604029 9553 5779 CM091754.1 scf7180002754862 99.89 True fake: scaffold gap size wrong estimation (local) 4599051 4600254 13482 12279 CM091754.1 scf7180002754862 99.75 True fake: scaffold gap size wrong estimation (local) 4598375 4598978 14365 13762 CM091754.1 scf7180002754862 99.83 True fake: scaffold gap size wrong estimation (local) 4596333 4597961 16562 14934 CM091754.1 scf7180002754862 100.0 True fake: scaffold gap size wrong estimation (local) 4585182 4595207 26606 16583 CM091754.1 scf7180002754862 99.96 True relocation, scaffold gap is present, inconsistency = 152313 4432195 4432846 26629 27281 CM091754.1 scf7180002754862 99.08 True relocation, scaffold gap is present, inconsistency = 138986 4580369 4584645 40094 35818 CM091754.1 scf7180002754862 100.0 True fake: scaffold gap size wrong estimation (local) 4576897 4580368 48337 44866 CM091754.1 scf7180002754862 99.4 True translocation, scaffold gap is present 16028921 16067093 48799 85642 CM091758.1 scf7180002754862 96.47 True relocation, inconsistency = 27238 16094332 16095749 85643 87061 CM091758.1 scf7180002754862 99.93 True relocation, scaffold gap is present, inconsistency = -65688 16064494 16065137 121494 122137 CM091758.1 scf7180002754862 100.0 True CONTIG scf7180002754862 125295 misassembled 1163513 1164435 923 1 CM091752.1 scf7180002754863 99.13 True local misassembly 1161947 1163258 2235 924 CM091752.1 scf7180002754863 99.77 True local misassembly 1160155 1161946 4168 2377 CM091752.1 scf7180002754863 99.0 True indel: indel (<= 5bp) 1159376 1160154 4950 4172 CM091752.1 scf7180002754863 99.61 True fake: scaffold gap size wrong estimation (local) 1140788 1157537 24235 7321 CM091752.1 scf7180002754863 95.3 True fake: scaffold gap size wrong estimation (local) 1131752 1140769 39197 30213 CM091752.1 scf7180002754863 98.21 True fake: scaffold gap size wrong estimation (local) 1127814 1130173 42499 40133 CM091752.1 scf7180002754863 98.9 True fake: scaffold gap size wrong estimation (local) 1123457 1124485 46629 45601 CM091752.1 scf7180002754863 99.51 True local misassembly 1121484 1122559 48253 47178 CM091752.1 scf7180002754863 99.26 True indel: indel (<= 5bp) 1120619 1121483 49121 48257 CM091752.1 scf7180002754863 99.42 True indel: indel (> 5bp) 1119937 1120609 49794 49122 CM091752.1 scf7180002754863 98.81 True local misassembly 1118538 1119636 50908 49810 CM091752.1 scf7180002754863 99.27 True indel: indel (<= 5bp) 1117626 1118536 51819 50909 CM091752.1 scf7180002754863 99.67 True local misassembly 1115777 1116856 53670 52591 CM091752.1 scf7180002754863 98.52 True local misassembly 1114266 1115073 54478 53671 CM091752.1 scf7180002754863 98.89 True indel: indel (> 5bp) 1112340 1113831 56458 54967 CM091752.1 scf7180002754863 99.33 True indel: stretch of mismatches 1111806 1112328 56992 56470 CM091752.1 scf7180002754863 98.28 True indel: indel (<= 5bp) 1109808 1111805 58993 56996 CM091752.1 scf7180002754863 99.6 True indel: indel (<= 5bp) 1108417 1109807 60385 58995 CM091752.1 scf7180002754863 99.5 True local misassembly 1106040 1106733 61596 60903 CM091752.1 scf7180002754863 95.24 True local misassembly 1104716 1105254 62634 62096 CM091752.1 scf7180002754863 99.26 True indel: indel (<= 5bp) 1102765 1104715 64586 62636 CM091752.1 scf7180002754863 99.59 True indel: indel (<= 5bp) 1101515 1102449 65835 64901 CM091752.1 scf7180002754863 99.57 True local misassembly 1099950 1100901 67402 66451 CM091752.1 scf7180002754863 99.58 True indel: indel (<= 5bp) 1099364 1099949 67989 67404 CM091752.1 scf7180002754863 99.66 True indel: indel (<= 5bp) 1098686 1099355 68669 68000 CM091752.1 scf7180002754863 98.96 True indel: indel (<= 5bp) 1097841 1098640 69516 68717 CM091752.1 scf7180002754863 99.75 True fake: scaffold gap size wrong estimation (local) 1090183 1096693 79414 73102 CM091752.1 scf7180002754863 95.8 True fake: scaffold gap size wrong estimation (local) 1088127 1088857 80932 80202 CM091752.1 scf7180002754863 99.32 True indel: indel (> 5bp) 1087344 1088102 81724 80966 CM091752.1 scf7180002754863 99.74 True indel: indel (<= 5bp) 1086118 1087343 82951 81726 CM091752.1 scf7180002754863 99.35 True fake: scaffold gap size wrong estimation (local) 1084430 1085194 84683 83919 CM091752.1 scf7180002754863 99.61 True indel: indel (<= 5bp) 1083280 1084244 85832 84868 CM091752.1 scf7180002754863 99.59 True local misassembly 1081121 1082862 87574 85833 CM091752.1 scf7180002754863 99.6 True fake: scaffold gap size wrong estimation (local) 1080025 1081034 88669 87660 CM091752.1 scf7180002754863 99.5 True indel: indel (> 5bp) 1078162 1080012 90520 88670 CM091752.1 scf7180002754863 96.97 True local misassembly 1074380 1076516 92715 90579 CM091752.1 scf7180002754863 99.11 True fake: scaffold gap size wrong estimation (local) 1064979 1070101 97897 92777 CM091752.1 scf7180002754863 99.63 True relocation, scaffold gap is present, inconsistency = -10728 1070409 1073828 103097 99776 CM091752.1 scf7180002754863 95.32 True fake: scaffold gap size wrong estimation (local) 1063930 1064967 107557 106481 CM091752.1 scf7180002754863 95.67 True fake: scaffold gap size wrong estimation (local) 1063312 1063841 108524 107995 CM091752.1 scf7180002754863 97.74 True fake: scaffold gap size wrong estimation (local) 1058587 1063040 113002 108545 CM091752.1 scf7180002754863 99.08 True fake: scaffold gap size wrong estimation (local) 1054912 1058122 120453 117242 CM091752.1 scf7180002754863 98.97 True CONTIG scf7180002754863 120453 misassembled 5042826 5130405 87616 1 CM091766.1 scf7180002754864 99.34 True relocation, scaffold gap is present, inconsistency = -19619 4952242 5042391 197801 107670 CM091766.1 scf7180002754864 99.63 True relocation, scaffold gap is present, inconsistency = -76352 4931802 4952210 294652 274185 CM091766.1 scf7180002754864 99.06 True fake: scaffold gap size wrong estimation (local) 4926553 4931501 301923 296975 CM091766.1 scf7180002754864 99.74 True fake: scaffold gap size wrong estimation (local) 4922565 4926636 310915 306841 CM091766.1 scf7180002754864 99.51 True fake: scaffold gap size wrong estimation (local) 4836066 4922262 397291 311218 CM091766.1 scf7180002754864 99.09 True indel: indel (<= 5bp) 4752392 4836006 480971 397353 CM091766.1 scf7180002754864 99.92 True indel: indel (> 5bp) 4708259 4752286 525117 481090 CM091766.1 scf7180002754864 99.89 True CONTIG scf7180002754864 525316 misassembled 4382713 4430987 48100 14 CM091753.1 scf7180002754865 99.11 True fake: scaffold gap size wrong estimation (local) 4352174 4382302 81872 52362 CM091753.1 scf7180002754865 97.13 True relocation, scaffold gap is present, inconsistency = -29354 4274002 4352186 188869 111214 CM091753.1 scf7180002754865 98.76 True relocation, scaffold gap is present, inconsistency = -40584 4248557 4273903 254927 229552 CM091753.1 scf7180002754865 99.21 True indel: indel (> 5bp) 4227372 4248102 276030 255318 CM091753.1 scf7180002754865 99.4 True local misassembly 4060013 4227303 443450 276208 CM091753.1 scf7180002754865 99.79 True indel: indel (<= 5bp) 4045650 4059977 457835 443490 CM091753.1 scf7180002754865 99.04 True indel: indel (> 5bp) 3984151 4045617 519377 457878 CM091753.1 scf7180002754865 99.33 True fake: scaffold gap size wrong estimation (local) 3981224 3983586 522935 520508 CM091753.1 scf7180002754865 97.84 True fake: scaffold gap size wrong estimation (local) 3970188 3981013 534232 523408 CM091753.1 scf7180002754865 99.79 True CONTIG scf7180002754865 542971 misassembled 16243381 16283129 39752 1 CM091751.1 scf7180002754866 99.96 True relocation, inconsistency = 17261 16201911 16226119 63956 39753 CM091751.1 scf7180002754866 99.82 True relocation, inconsistency = 30138 15955636 16163204 279599 72525 CM091751.1 scf7180002754866 99.41 True relocation, scaffold gap is present, inconsistency = -73905 15926153 15955302 382808 353838 CM091751.1 scf7180002754866 99.05 True relocation, scaffold gap is present, inconsistency = -17587 15914769 15926165 411779 400383 CM091751.1 scf7180002754866 99.6 True relocation, scaffold gap is present, inconsistency = -10840 15909581 15914634 427825 422754 CM091751.1 scf7180002754866 98.39 True fake: scaffold gap size wrong estimation (local) 15823227 15909741 518865 432298 CM091751.1 scf7180002754866 99.27 True CONTIG scf7180002754866 518938 misassembled 18579393 18597506 1 17551 CM091751.1 scf7180002754867 95.44 True fake: scaffold gap size wrong estimation (extensive) 18607066 18619162 18530 30642 CM091751.1 scf7180002754867 99.26 True indel: indel (> 5bp) 18619324 18632636 30757 44339 CM091751.1 scf7180002754867 97.01 True local misassembly 18633361 18647537 44556 58536 CM091751.1 scf7180002754867 95.6 True CONTIG scf7180002754867 59115 correct 3028195 3055756 97 27753 CM091751.1 scf7180002754868 98.96 True indel: indel (> 5bp) 3055799 3122058 27822 93774 CM091751.1 scf7180002754868 98.18 True fake: scaffold gap size wrong estimation (local) 3122089 3127288 95618 100675 CM091751.1 scf7180002754868 96.85 True local misassembly 3127441 3129488 100719 102762 CM091751.1 scf7180002754868 99.61 True fake: scaffold gap size wrong estimation (local) 3129509 3144745 108790 123922 CM091751.1 scf7180002754868 98.5 True indel: indel (> 5bp) 3144964 3159173 124125 138332 CM091751.1 scf7180002754868 99.16 True relocation, scaffold gap is present, inconsistency = -16754 3159216 3308342 155129 304129 CM091751.1 scf7180002754868 99.06 True fake: scaffold gap size wrong estimation (local) 3309270 3315668 304754 311169 CM091751.1 scf7180002754868 99.39 True fake: scaffold gap size wrong estimation (local) 3315803 3344619 311273 339882 CM091751.1 scf7180002754868 98.21 True fake: scaffold gap size wrong estimation (extensive) 3344642 3436321 349817 441466 CM091751.1 scf7180002754868 99.39 True fake: scaffold gap size wrong estimation (local) 3436414 3447304 441526 452178 CM091751.1 scf7180002754868 97.22 True fake: scaffold gap size wrong estimation (local) 3447525 3508306 454030 514242 CM091751.1 scf7180002754868 98.68 True relocation, scaffold gap is present, inconsistency = -48283 3508593 3511649 562812 565868 CM091751.1 scf7180002754868 99.84 True CONTIG scf7180002754868 565868 misassembled 3630387 3714993 84439 21 CM091760.1 scf7180002754869 99.06 True relocation, scaffold gap is present, inconsistency = -10383 3610783 3630359 114415 94850 CM091760.1 scf7180002754869 99.11 True fake: scaffold gap size wrong estimation (extensive) 3601719 3610584 132041 123162 CM091760.1 scf7180002754869 99.05 True relocation, scaffold gap is present, inconsistency = -10764 3531823 3601721 212743 142803 CM091760.1 scf7180002754869 99.29 True indel: indel (> 5bp) 3512624 3531764 231298 212820 CM091760.1 scf7180002754869 95.86 True indel: stretch of mismatches 3502538 3512623 241389 231299 CM091760.1 scf7180002754869 99.59 True relocation, scaffold gap is present, inconsistency = -10360 3465732 3502508 287551 251779 CM091760.1 scf7180002754869 96.35 True relocation, scaffold gap is present, inconsistency = -13739 3460620 3465707 306432 301315 CM091760.1 scf7180002754869 98.85 True fake: scaffold gap size wrong estimation (local) 3431547 3459168 334103 306462 CM091760.1 scf7180002754869 99.5 True CONTIG scf7180002754869 359191 misassembled 6423830 6523967 143 100318 CM091763.1 scf7180002754870 99.73 True relocation, scaffold gap is present, inconsistency = -35382 6524158 6545277 135891 157011 CM091763.1 scf7180002754870 99.99 True relocation, inconsistency = 40019 6585297 6670350 157012 242067 CM091763.1 scf7180002754870 99.96 True indel: indel (> 5bp) 6670416 6741914 242173 313754 CM091763.1 scf7180002754870 99.36 True indel: indel (> 5bp) 6741963 6844004 313816 415914 CM091763.1 scf7180002754870 99.53 True CONTIG scf7180002754870 415914 misassembled 7314464 7487225 172802 20 CM091758.1 scf7180002754871 99.5 True indel: indel (<= 5bp) 7290678 7314450 196587 172819 CM091758.1 scf7180002754871 99.78 True relocation, scaffold gap is present, inconsistency = -28440 7253653 7290714 262041 224991 CM091758.1 scf7180002754871 99.33 True fake: scaffold gap size wrong estimation (local) 7241386 7253471 274195 262103 CM091758.1 scf7180002754871 99.26 True fake: scaffold gap size wrong estimation (local) 7236766 7240932 279493 275327 CM091758.1 scf7180002754871 99.3 True indel: indel (> 5bp) 7233515 7236581 282755 279689 CM091758.1 scf7180002754871 99.71 True local misassembly 7230473 7232368 285341 283446 CM091758.1 scf7180002754871 99.79 True local misassembly 7229712 7230244 285874 285342 CM091758.1 scf7180002754871 99.81 True fake: scaffold gap size wrong estimation (local) 7226769 7227800 289713 288682 CM091758.1 scf7180002754871 98.55 True fake: scaffold gap size wrong estimation (local) 7224697 7226463 291991 290227 CM091758.1 scf7180002754871 98.87 True CONTIG scf7180002754871 293304 misassembled 15139039 15140269 1 1219 CM091751.1 scf7180002754872 98.46 True fake: scaffold gap size wrong estimation (local) 15140799 15155492 1748 16206 CM091751.1 scf7180002754872 98.12 True fake: scaffold gap size wrong estimation (local) 15155794 15159542 16566 20311 CM091751.1 scf7180002754872 99.03 True fake: scaffold gap size wrong estimation (local) 15159914 15165891 20618 26584 CM091751.1 scf7180002754872 99.66 True fake: scaffold gap size wrong estimation (local) 15166076 15178948 26742 39640 CM091751.1 scf7180002754872 99.27 True fake: scaffold gap size wrong estimation (local) 15179077 15181874 39780 42577 CM091751.1 scf7180002754872 99.71 True fake: scaffold gap size wrong estimation (local) 15182267 15184102 42598 44855 CM091751.1 scf7180002754872 95.7 True fake: scaffold gap size wrong estimation (local) 15184230 15203590 45035 64436 CM091751.1 scf7180002754872 99.47 True relocation, scaffold gap is present, inconsistency = -10106 15203550 15209004 74502 79963 CM091751.1 scf7180002754872 99.65 True fake: scaffold gap size wrong estimation (local) 15209356 15227894 84292 102836 CM091751.1 scf7180002754872 99.73 True relocation, scaffold gap is present, inconsistency = -17850 15228149 15273164 120941 165428 CM091751.1 scf7180002754872 97.82 True fake: scaffold gap size wrong estimation (local) 15273377 15282035 165641 174246 CM091751.1 scf7180002754872 98.38 True fake: scaffold gap size wrong estimation (extensive) 15282970 15285443 182222 184695 CM091751.1 scf7180002754872 99.5 True relocation, inconsistency = -14082439 1203005 1269723 184696 250751 CM091751.1 scf7180002754872 98.21 True local misassembly 1270723 1271759 250752 251788 CM091751.1 scf7180002754872 99.52 True relocation, scaffold gap is present, inconsistency = -57363 1271875 1300737 309267 338111 CM091751.1 scf7180002754872 99.46 True relocation, scaffold gap is present, inconsistency = 1620337 3018227 3028148 445134 435264 CM091751.1 scf7180002754872 98.69 True relocation, scaffold gap is present, inconsistency = 1614825 1300728 1403353 445183 547452 CM091751.1 scf7180002754872 98.61 True fake: scaffold gap size wrong estimation (local) 1403899 1465014 547945 609081 CM091751.1 scf7180002754872 99.27 True CONTIG scf7180002754872 609081 misassembled 11626290 11649131 416 23266 CM091753.1 scf7180002754873 99.74 True fake: scaffold gap size wrong estimation (local) 11649494 11686506 23653 60330 CM091753.1 scf7180002754873 98.38 True fake: scaffold gap size wrong estimation (local) 11687297 11739379 60351 115065 CM091753.1 scf7180002754873 97.71 True fake: scaffold gap size wrong estimation (local) 11740117 11746604 116511 122991 CM091753.1 scf7180002754873 98.58 True CONTIG scf7180002754873 122991 correct 15645645 15716358 69309 1 CM091758.1 scf7180002754874 97.64 True fake: scaffold gap size wrong estimation (local) 15609572 15645542 110042 74032 CM091758.1 scf7180002754874 99.71 True fake: scaffold gap size wrong estimation (local) 15568554 15609051 150215 110562 CM091758.1 scf7180002754874 97.58 True fake: scaffold gap size wrong estimation (local) 15531565 15568180 187238 150574 CM091758.1 scf7180002754874 99.56 True indel: indel (> 5bp) 15511998 15531523 206846 187289 CM091758.1 scf7180002754874 99.58 True relocation, scaffold gap is present, inconsistency = -24948 15494361 15511751 249461 232041 CM091758.1 scf7180002754874 99.36 True fake: scaffold gap size wrong estimation (local) 15491915 15494354 252436 249995 CM091758.1 scf7180002754874 99.67 True fake: not a misassembly (possible transposable element) 15543328 15550019 252503 258937 CM091754.1 scf7180002754874 95.4 True fake: not a misassembly (possible transposable element) 15488944 15491813 262027 259158 CM091758.1 scf7180002754874 99.9 True fake: scaffold gap size wrong estimation (local) 15486514 15488744 267023 264793 CM091758.1 scf7180002754874 99.15 True fake: not a misassembly (possible transposable element) 15549882 15556428 267024 273572 CM091754.1 scf7180002754874 99.47 True fake: not a misassembly (possible transposable element) 15484480 15486446 275546 273593 CM091758.1 scf7180002754874 98.78 True fake: scaffold gap size wrong estimation (local) 15480197 15483194 281557 278559 CM091758.1 scf7180002754874 99.8 True fake: scaffold gap size wrong estimation (local) 15469608 15478036 290006 281578 CM091758.1 scf7180002754874 99.82 True translocation, scaffold gap is present 15556593 15558629 290027 292064 CM091754.1 scf7180002754874 99.61 True CONTIG scf7180002754874 299484 misassembled 927634 990287 62670 1 CM091753.1 scf7180002754875 99.92 True fake: scaffold gap size wrong estimation (local) 915805 927520 74031 62798 CM091753.1 scf7180002754875 95.53 True fake: scaffold gap size wrong estimation (extensive) 911121 913959 87405 84568 CM091753.1 scf7180002754875 99.96 True fake: scaffold gap size wrong estimation (local) 898925 909728 98653 87842 CM091753.1 scf7180002754875 99.86 True fake: scaffold gap size wrong estimation (extensive) 893197 897107 113583 109673 CM091753.1 scf7180002754875 99.87 True fake: scaffold gap size wrong estimation (local) 857217 893173 151667 115704 CM091753.1 scf7180002754875 99.88 True fake: scaffold gap size wrong estimation (local) 842994 856533 165301 152365 CM091753.1 scf7180002754875 95.31 True indel: stretch of mismatches 839965 842993 168333 165302 CM091753.1 scf7180002754875 99.71 True fake: scaffold gap size wrong estimation (local) 838820 839386 173204 172638 CM091753.1 scf7180002754875 100.0 True fake: scaffold gap size wrong estimation (local) 827332 838105 185175 174403 CM091753.1 scf7180002754875 99.94 True fake: scaffold gap size wrong estimation (local) 815272 824563 195740 186449 CM091753.1 scf7180002754875 99.95 True fake: scaffold gap size wrong estimation (local) 810102 814072 200834 196865 CM091753.1 scf7180002754875 99.83 True local misassembly 726929 809353 283103 200835 CM091753.1 scf7180002754875 99.78 True CONTIG scf7180002754875 283103 correct 76687 102676 20 26032 CM091751.1 scf7180002754876 99.76 True relocation, scaffold gap is present, inconsistency = -19652 104512 106290 47520 49298 CM091751.1 scf7180002754876 96.57 True indel: indel (<= 5bp) 106291 110148 49300 53157 CM091751.1 scf7180002754876 99.92 True indel: indel (<= 5bp) 110199 111608 53206 54615 CM091751.1 scf7180002754876 99.93 True fake: scaffold gap size wrong estimation (local) 111635 113919 56181 58465 CM091751.1 scf7180002754876 99.96 True local misassembly 119535 132845 58466 71791 CM091751.1 scf7180002754876 99.81 True relocation, scaffold gap is present, inconsistency = -16294 127974 128487 83214 83736 CM091751.1 scf7180002754876 98.02 True fake: scaffold gap size wrong estimation (local) 134060 144297 88995 99230 CM091751.1 scf7180002754876 99.89 True fake: scaffold gap size wrong estimation (extensive) 144312 194058 108222 157308 CM091751.1 scf7180002754876 98.21 True fake: scaffold gap size wrong estimation (local) 194759 225660 157906 188871 CM091751.1 scf7180002754876 99.61 True fake: scaffold gap size wrong estimation (local) 226075 258035 189225 220895 CM091751.1 scf7180002754876 98.49 True fake: scaffold gap size wrong estimation (local) 258086 275236 222776 239971 CM091751.1 scf7180002754876 99.61 True fake: scaffold gap size wrong estimation (local) 275330 314791 240086 280166 CM091751.1 scf7180002754876 98.01 True translocation 16825564 16827338 280167 281940 CM091752.1 scf7180002754876 99.72 True CONTIG scf7180002754876 281940 misassembled 14517729 14560463 42559 1 CM091753.1 scf7180002754877 99.05 True fake: scaffold gap size wrong estimation (local) 14487926 14517524 78320 48721 CM091753.1 scf7180002754877 99.51 True relocation, scaffold gap is present, inconsistency = -16400 14479041 14487970 103611 94676 CM091753.1 scf7180002754877 99.34 True fake: scaffold gap size wrong estimation (extensive) 14452861 14479012 138810 112643 CM091753.1 scf7180002754877 99.39 True fake: scaffold gap size wrong estimation (extensive) 14433442 14452656 167731 148502 CM091753.1 scf7180002754877 99.11 True fake: scaffold gap size wrong estimation (local) 14414444 14432536 190725 172199 CM091753.1 scf7180002754877 97.2 True translocation 19499910 19501704 192574 190781 CM091751.1 scf7180002754877 99.28 True fake: scaffold gap size wrong estimation (local) 19498614 19499799 193874 192689 CM091751.1 scf7180002754877 99.66 True indel: indel (<= 5bp) 19498076 19498613 194413 193876 CM091751.1 scf7180002754877 99.07 True local misassembly 19494078 19497022 197685 194741 CM091751.1 scf7180002754877 99.35 True indel: indel (<= 5bp) 19493116 19493971 198649 197794 CM091751.1 scf7180002754877 99.42 True indel: indel (<= 5bp) 19492254 19493115 199512 198651 CM091751.1 scf7180002754877 99.3 True fake: scaffold gap size wrong estimation (local) 19489011 19490138 201978 200851 CM091751.1 scf7180002754877 98.76 True local misassembly 19487203 19488015 203796 202984 CM091751.1 scf7180002754877 99.38 True fake: scaffold gap size wrong estimation (local) 19486084 19486772 204945 204257 CM091751.1 scf7180002754877 98.26 True indel: stretch of mismatches 19485010 19485697 206019 205332 CM091751.1 scf7180002754877 99.56 True fake: scaffold gap size wrong estimation (local) 19483245 19484031 208378 207592 CM091751.1 scf7180002754877 99.75 True indel: indel (<= 5bp) 19482580 19483244 209045 208381 CM091751.1 scf7180002754877 99.55 True indel: indel (<= 5bp) 19481589 19482185 210039 209443 CM091751.1 scf7180002754877 98.99 True indel: indel (<= 5bp) 19480775 19481408 210855 210222 CM091751.1 scf7180002754877 99.53 True local misassembly 19478780 19479647 212857 211990 CM091751.1 scf7180002754877 98.73 True indel: stretch of mismatches 19477790 19478359 213847 213278 CM091751.1 scf7180002754877 99.47 True fake: scaffold gap size wrong estimation (local) 19469978 19475682 221445 215722 CM091751.1 scf7180002754877 98.83 True fake: scaffold gap size wrong estimation (local) 19458096 19469898 233432 221567 CM091751.1 scf7180002754877 98.64 True fake: scaffold gap size wrong estimation (local) 19452156 19456792 239026 234387 CM091751.1 scf7180002754877 99.03 True fake: scaffold gap size wrong estimation (local) 19445919 19450913 244045 239153 CM091751.1 scf7180002754877 96.53 True local misassembly 19451481 19452003 244616 244092 CM091751.1 scf7180002754877 98.1 True fake: scaffold gap size wrong estimation (local) 19439958 19445797 255468 249621 CM091751.1 scf7180002754877 97.91 True fake: scaffold gap size wrong estimation (local) 19427399 19439481 267768 255924 CM091751.1 scf7180002754877 96.24 True CONTIG scf7180002754877 267768 misassembled 3707259 3708185 1065 139 CM091752.1 scf7180002754878 99.89 True local misassembly 3705233 3705957 3077 2353 CM091752.1 scf7180002754878 99.59 True fake: scaffold gap size wrong estimation (local) 3703921 3704588 4220 3553 CM091752.1 scf7180002754878 99.55 True indel: indel (<= 5bp) 3703381 3703918 4758 4221 CM091752.1 scf7180002754878 98.7 True indel: indel (> 5bp) 3702539 3703332 5575 4782 CM091752.1 scf7180002754878 99.62 True fake: scaffold gap size wrong estimation (local) 3698182 3702635 10763 6295 CM091752.1 scf7180002754878 99.64 True fake: scaffold gap size wrong estimation (local) 3691086 3698003 18912 11929 CM091752.1 scf7180002754878 98.68 True fake: scaffold gap size wrong estimation (local) 3687942 3690968 28440 25408 CM091752.1 scf7180002754878 99.41 True fake: scaffold gap size wrong estimation (local) 3678765 3685593 37438 30608 CM091752.1 scf7180002754878 99.5 True fake: scaffold gap size wrong estimation (local) 3675348 3678462 43799 40686 CM091752.1 scf7180002754878 99.58 True CONTIG scf7180002754878 46447 correct 1621798 1624334 1 2538 CM091764.1 scf7180002754879 99.13 True indel: indel (<= 5bp) 1624723 1638936 2928 17103 CM091764.1 scf7180002754879 99.21 True fake: scaffold gap size wrong estimation (local) 1639122 1642879 17294 21051 CM091764.1 scf7180002754879 99.92 True fake: scaffold gap size wrong estimation (local) 1643376 1645132 21536 23292 CM091764.1 scf7180002754879 98.58 True fake: not a misassembly (possible transposable element) 15353988 15355103 23293 24408 CM091752.1 scf7180002754879 98.39 True fake: not a misassembly (possible transposable element) 1647077 1650583 27305 30823 CM091764.1 scf7180002754879 98.61 True translocation 15464304 15466095 32615 30824 CM091752.1 scf7180002754879 99.34 True translocation, scaffold gap is present 1645334 1646711 32636 34014 CM091764.1 scf7180002754879 99.85 True translocation, scaffold gap is present 328883 329570 40085 39398 CM091761.1 scf7180002754879 95.06 True translocation 651370 656317 40359 45306 CM091753.1 scf7180002754879 99.41 True translocation 14530613 14563013 77679 45307 CM091756.1 scf7180002754879 99.4 True translocation, scaffold gap is present 3907098 3907723 77854 78490 CM091768.1 scf7180002754879 97.73 True CONTIG scf7180002754879 116111 misassembled 15873236 15875596 24 2387 CM091757.1 scf7180002754880 98.52 True translocation, scaffold gap is present 9060922 9062264 3784 2439 CM091767.1 scf7180002754880 98.66 True translocation 11496681 11497468 3785 4572 CM091765.1 scf7180002754880 98.91 True translocation, scaffold gap is present 13942627 13943333 4593 5298 CM091752.1 scf7180002754880 98.3 True translocation, scaffold gap is present 9063745 9065695 7444 9395 CM091767.1 scf7180002754880 99.95 True fake: not a misassembly (possible transposable element) 10808702 10812883 13598 9416 CM091765.1 scf7180002754880 99.78 True fake: not a misassembly (possible transposable element) 9069406 9071835 16821 19259 CM091767.1 scf7180002754880 99.51 True translocation, scaffold gap is present 10806477 10808348 21496 19625 CM091765.1 scf7180002754880 99.95 True CONTIG scf7180002754880 21496 misassembled 82245 89779 7529 1 CM091753.1 scf7180002754881 99.88 True translocation, scaffold gap is present 2311364 2318238 11278 18166 CM091764.1 scf7180002754881 97.45 True translocation, scaffold gap is present 10304321 10304820 20137 19638 CM091752.1 scf7180002754881 99.8 True translocation, scaffold gap is present 78623 80813 23198 20979 CM091753.1 scf7180002754881 97.03 True translocation 2310237 2311139 23199 24101 CM091764.1 scf7180002754881 98.08 True fake: not a misassembly (possible transposable element) 1674429 1675459 27377 26347 CM091764.1 scf7180002754881 99.9 True fake: not a misassembly (possible transposable element) 2319278 2325086 31122 36930 CM091764.1 scf7180002754881 99.95 True CONTIG scf7180002754881 37493 misassembled 852062 889707 27 37448 CM091763.1 scf7180002754882 99.3 True relocation, scaffold gap is present, inconsistency = -19017 890000 913367 56758 80173 CM091763.1 scf7180002754882 99.75 True relocation, scaffold gap is present, inconsistency = -23506 913362 916012 103674 106303 CM091763.1 scf7180002754882 99.13 True CONTIG scf7180002754882 106303 misassembled 1402413 1403131 779 1497 CM091754.1 scf7180002754883 99.86 True local misassembly 1404431 1405566 2537 3672 CM091754.1 scf7180002754883 99.47 True local misassembly 1406139 1406956 4068 4885 CM091754.1 scf7180002754883 99.27 True local misassembly 1407560 1408308 5489 6237 CM091754.1 scf7180002754883 99.07 True fake: scaffold gap size wrong estimation (local) 1408863 1412726 6605 10470 CM091754.1 scf7180002754883 98.66 True fake: scaffold gap size wrong estimation (local) 1413662 1417803 13873 18029 CM091754.1 scf7180002754883 98.44 True fake: scaffold gap size wrong estimation (local) 1419239 1429482 18875 29122 CM091754.1 scf7180002754883 98.98 True indel: indel (> 5bp) 1429533 1431331 29184 30992 CM091754.1 scf7180002754883 97.91 True indel: indel (<= 5bp) 1431410 1464937 31068 64402 CM091754.1 scf7180002754883 97.76 True indel: indel (> 5bp) 1465121 1467940 64519 67338 CM091754.1 scf7180002754883 99.47 True indel: stretch of mismatches 1468228 1469039 67626 68437 CM091754.1 scf7180002754883 98.4 True local misassembly 1469496 1470547 68438 69489 CM091754.1 scf7180002754883 97.72 True indel: indel (<= 5bp) 1470549 1471109 69490 70050 CM091754.1 scf7180002754883 99.47 True indel: indel (<= 5bp) 1471110 1474371 70053 73314 CM091754.1 scf7180002754883 99.69 True fake: scaffold gap size wrong estimation (local) 1475030 1480246 73855 78995 CM091754.1 scf7180002754883 96.99 True fake: scaffold gap size wrong estimation (local) 1480360 1508640 79099 107463 CM091754.1 scf7180002754883 98.8 True indel: indel (> 5bp) 1508712 1606797 107522 205682 CM091754.1 scf7180002754883 99.49 True relocation, scaffold gap is present, inconsistency = -99163 1515718 1516463 213766 214515 CM091754.1 scf7180002754883 99.5 True fake: scaffold gap size wrong estimation (local) 1606743 1609222 305122 307603 CM091754.1 scf7180002754883 98.75 True indel: indel (> 5bp) 1609389 1621929 307703 320226 CM091754.1 scf7180002754883 99.01 True relocation, scaffold gap is present, inconsistency = -10663 1622002 1625448 330962 334415 CM091754.1 scf7180002754883 99.36 True fake: scaffold gap size wrong estimation (local) 1625680 1675447 334656 384540 CM091754.1 scf7180002754883 99.11 True indel: indel (> 5bp) 1675604 1708032 384691 417140 CM091754.1 scf7180002754883 99.17 True local misassembly 1713292 1729233 417141 433091 CM091754.1 scf7180002754883 99.44 True relocation, scaffold gap is present, inconsistency = -49597 1729710 1745907 483165 499384 CM091754.1 scf7180002754883 99.49 True CONTIG scf7180002754883 499407 misassembled 15311030 15312135 1106 1 CM091757.1 scf7180002754884 100.0 True indel: indel (<= 5bp) 15309203 15311028 2932 1107 CM091757.1 scf7180002754884 100.0 True indel: indel (<= 5bp) 15307687 15309198 4444 2933 CM091757.1 scf7180002754884 98.68 True local misassembly 15306627 15307264 5082 4445 CM091757.1 scf7180002754884 100.0 True indel: indel (<= 5bp) 15305441 15306626 6269 5084 CM091757.1 scf7180002754884 99.83 True fake: scaffold gap size wrong estimation (local) 15295704 15305514 17781 7971 CM091757.1 scf7180002754884 99.98 True fake: scaffold gap size wrong estimation (local) 15293318 15295565 25091 22844 CM091757.1 scf7180002754884 100.0 True fake: scaffold gap size wrong estimation (local) 15291703 15293400 28724 27027 CM091757.1 scf7180002754884 100.0 True fake: scaffold gap size wrong estimation (local) 15265329 15291018 54975 29265 CM091757.1 scf7180002754884 99.96 True fake: scaffold gap size wrong estimation (local) 15259166 15264818 66771 61119 CM091757.1 scf7180002754884 99.96 True fake: not a misassembly (possible transposable element) 8337061 8338236 67966 66792 CM091767.1 scf7180002754884 99.91 True fake: not a misassembly (possible transposable element) 15200562 15259282 127254 68668 CM091757.1 scf7180002754884 99.61 True relocation, scaffold gap is present, inconsistency = -42611 15154449 15200148 215954 170279 CM091757.1 scf7180002754884 99.85 True CONTIG scf7180002754884 261047 misassembled 801234 802036 804 1 CM091754.1 scf7180002754885 98.39 True indel: indel (> 5bp) 798833 801039 3216 1010 CM091754.1 scf7180002754885 99.73 True fake: scaffold gap size wrong estimation (local) 795721 797227 5154 3648 CM091754.1 scf7180002754885 99.93 True local misassembly 793994 794740 6855 6109 CM091754.1 scf7180002754885 99.6 True indel: indel (<= 5bp) 793107 793720 7740 7127 CM091754.1 scf7180002754885 99.51 True indel: indel (> 5bp) 791714 792872 9141 7983 CM091754.1 scf7180002754885 98.96 True fake: scaffold gap size wrong estimation (local) 789602 790591 17211 16222 CM091754.1 scf7180002754885 99.39 True local misassembly 788113 788684 18272 17701 CM091754.1 scf7180002754885 99.83 True indel: indel (<= 5bp) 786533 787672 19855 18716 CM091754.1 scf7180002754885 99.65 True local misassembly 783880 784983 21204 20101 CM091754.1 scf7180002754885 99.82 True fake: scaffold gap size wrong estimation (local) 781778 782717 23364 22425 CM091754.1 scf7180002754885 99.04 True local misassembly 779948 780640 25199 24507 CM091754.1 scf7180002754885 99.42 True indel: indel (<= 5bp) 778927 779661 26222 25488 CM091754.1 scf7180002754885 99.73 True fake: scaffold gap size wrong estimation (local) 776876 778153 29847 28570 CM091754.1 scf7180002754885 99.22 True fake: scaffold gap size wrong estimation (local) 771878 776260 35094 30699 CM091754.1 scf7180002754885 98.98 True CONTIG scf7180002754885 35597 correct 2258655 2259597 1 939 CM091751.1 scf7180002754886 96.39 True translocation, scaffold gap is present 10137816 10139385 45923 47493 CM091765.1 scf7180002754886 99.9 True relocation, inconsistency = 11963 10115581 10125852 57768 47494 CM091765.1 scf7180002754886 99.85 True translocation, scaffold gap is present 8094824 8095377 85382 85935 CM091767.1 scf7180002754886 100.0 True fake: scaffold gap size wrong estimation (local) 8096323 8096977 86795 87449 CM091767.1 scf7180002754886 99.85 True translocation, scaffold gap is present 10072119 10092038 89255 109159 CM091765.1 scf7180002754886 99.84 True translocation, scaffold gap is present 13507805 13508408 129537 128935 CM091758.1 scf7180002754886 99.67 True translocation, scaffold gap is present 10092030 10095869 129558 133397 CM091765.1 scf7180002754886 100.0 True fake: scaffold gap size wrong estimation (local) 10096046 10098694 133673 136327 CM091765.1 scf7180002754886 99.74 True fake: scaffold gap size wrong estimation (local) 10098980 10114511 136485 152030 CM091765.1 scf7180002754886 99.84 True relocation, scaffold gap is present, inconsistency = 32602 10044568 10051172 173841 167236 CM091765.1 scf7180002754886 99.95 True fake: scaffold gap size wrong estimation (local) 10041364 10044392 177025 173996 CM091765.1 scf7180002754886 99.93 True local misassembly 9997048 10040415 221410 178412 CM091765.1 scf7180002754886 99.1 True relocation, scaffold gap is present, inconsistency = -34752 9990727 9996911 262481 256299 CM091765.1 scf7180002754886 99.93 True local misassembly 9985341 9988101 265240 262482 CM091765.1 scf7180002754886 99.87 True fake: scaffold gap size wrong estimation (local) 9976476 9985193 273859 265388 CM091765.1 scf7180002754886 97.14 True fake: scaffold gap size wrong estimation (local) 9966238 9976085 289158 279311 CM091765.1 scf7180002754886 99.87 True CONTIG scf7180002754886 296064 misassembled 15383614 15398876 15022 1 CM091758.1 scf7180002754887 98.2 True fake: scaffold gap size wrong estimation (local) 15377934 15383305 27040 21669 CM091758.1 scf7180002754887 99.83 True fake: scaffold gap size wrong estimation (local) 15375977 15377545 29067 27499 CM091758.1 scf7180002754887 99.62 True indel: indel (<= 5bp) 15375298 15375972 29742 29068 CM091758.1 scf7180002754887 99.7 True local misassembly 15373384 15375057 31416 29743 CM091758.1 scf7180002754887 99.52 True indel: indel (<= 5bp) 15365567 15373278 39077 31527 CM091758.1 scf7180002754887 97.63 True fake: scaffold gap size wrong estimation (local) 15345383 15365414 58959 39230 CM091758.1 scf7180002754887 97.76 True relocation, scaffold gap is present, inconsistency = -12130 15337561 15344999 78742 71473 CM091758.1 scf7180002754887 97.04 True fake: scaffold gap size wrong estimation (local) 15318543 15337461 98987 80080 CM091758.1 scf7180002754887 98.75 True relocation, scaffold gap is present, inconsistency = -16140 15300335 15318392 132740 115278 CM091758.1 scf7180002754887 95.95 True relocation, scaffold gap is present, inconsistency = -10950 15296263 15299993 147754 144032 CM091758.1 scf7180002754887 99.36 True translocation, scaffold gap is present 4419015 4427808 147775 156494 CM091754.1 scf7180002754887 98.87 True CONTIG scf7180002754887 156494 misassembled 1789112 1794601 1 5494 CM091751.1 scf7180002754888 99.34 True fake: scaffold gap size wrong estimation (local) 1794491 1796013 5999 7532 CM091751.1 scf7180002754888 99.09 True fake: scaffold gap size wrong estimation (local) 1796322 1800907 7626 12222 CM091751.1 scf7180002754888 98.92 True fake: scaffold gap size wrong estimation (local) 1801315 1813672 14744 26801 CM091751.1 scf7180002754888 96.76 True indel: indel (<= 5bp) 1813850 1825838 26984 38908 CM091751.1 scf7180002754888 98.31 True indel: indel (> 5bp) 1825865 1844881 38949 57994 CM091751.1 scf7180002754888 99.31 True relocation, scaffold gap is present, inconsistency = -26331 1844984 1849953 84428 89319 CM091751.1 scf7180002754888 97.42 True translocation 6656517 6666895 89320 99736 CM091767.1 scf7180002754888 97.84 True fake: scaffold gap size wrong estimation (local) 6668113 6672860 100872 105632 CM091767.1 scf7180002754888 98.67 True local misassembly 6673842 6674673 106575 107406 CM091767.1 scf7180002754888 98.8 True indel: indel (> 5bp) 6674939 6678776 107694 111528 CM091767.1 scf7180002754888 98.75 True fake: scaffold gap size wrong estimation (local) 6679025 6679900 113177 114052 CM091767.1 scf7180002754888 99.09 True indel: indel (<= 5bp) 6679901 6680479 114057 114635 CM091767.1 scf7180002754888 99.31 True indel: indel (<= 5bp) 6680480 6682346 114638 116504 CM091767.1 scf7180002754888 99.36 True local misassembly 6683307 6714968 116654 148054 CM091767.1 scf7180002754888 98.14 True fake: scaffold gap size wrong estimation (local) 6715109 6725226 148272 158413 CM091767.1 scf7180002754888 99.23 True fake: scaffold gap size wrong estimation (local) 6725722 6740065 158855 173259 CM091767.1 scf7180002754888 98.79 True fake: scaffold gap size wrong estimation (local) 6741456 6744193 174249 176986 CM091767.1 scf7180002754888 99.49 True local misassembly 6745044 6746775 177113 178844 CM091767.1 scf7180002754888 99.71 True local misassembly 6746776 6747388 179088 179700 CM091767.1 scf7180002754888 98.86 True indel: indel (> 5bp) 6747397 6749646 179701 181950 CM091767.1 scf7180002754888 99.24 True fake: scaffold gap size wrong estimation (local) 6750208 6753372 182349 185513 CM091767.1 scf7180002754888 99.59 True indel: stretch of mismatches 6753438 6755135 185579 187276 CM091767.1 scf7180002754888 99.12 True indel: indel (<= 5bp) 6755139 6756818 187277 188956 CM091767.1 scf7180002754888 99.7 True local misassembly 6758073 6759374 189451 190752 CM091767.1 scf7180002754888 99.85 True indel: indel (> 5bp) 6759819 6760970 191164 192315 CM091767.1 scf7180002754888 97.48 True fake: scaffold gap size wrong estimation (local) 6761411 6768105 192911 199640 CM091767.1 scf7180002754888 98.84 True indel: indel (> 5bp) 6768183 6798670 199686 228948 CM091767.1 scf7180002754888 95.04 True fake: scaffold gap size wrong estimation (local) 6799452 6800823 229443 230814 CM091767.1 scf7180002754888 99.78 True CONTIG scf7180002754888 230814 misassembled 10055579 10106436 51212 409 CM091760.1 scf7180002754889 99.53 True relocation, scaffold gap is present, inconsistency = -32149 10048117 10054915 90825 84025 CM091760.1 scf7180002754889 99.82 True fake: scaffold gap size wrong estimation (local) 9958123 10048102 187864 97726 CM091760.1 scf7180002754889 99.7 True relocation, scaffold gap is present, inconsistency = 10895 9931973 9944962 203101 190130 CM091760.1 scf7180002754889 99.4 True relocation, scaffold gap is present, inconsistency = -25858 9944997 9957805 218176 203127 CM091760.1 scf7180002754889 98.76 True relocation, scaffold gap is present, inconsistency = 13002 9871209 9931971 298614 218200 CM091760.1 scf7180002754889 97.38 True fake: scaffold gap size wrong estimation (local) 9856675 9871199 316644 302012 CM091760.1 scf7180002754889 99.38 True fake: scaffold gap size wrong estimation (local) 9837593 9856573 335415 316738 CM091760.1 scf7180002754889 97.73 True fake: scaffold gap size wrong estimation (local) 9811957 9837574 362081 336490 CM091760.1 scf7180002754889 99.52 True indel: indel (> 5bp) 9780221 9811908 394497 362140 CM091760.1 scf7180002754889 98.93 True fake: scaffold gap size wrong estimation (local) 9779257 9780166 395480 394571 CM091760.1 scf7180002754889 97.8 True local misassembly 9777087 9778924 397318 395481 CM091760.1 scf7180002754889 99.84 True fake: scaffold gap size wrong estimation (local) 9654799 9777064 524055 398560 CM091760.1 scf7180002754889 99.59 True CONTIG scf7180002754889 524055 misassembled 8212392 8261970 49473 1 CM091756.1 scf7180002754890 99.56 True relocation, scaffold gap is present, inconsistency = -33644 8211619 8212146 83890 83363 CM091756.1 scf7180002754890 100.0 True fake: scaffold gap size wrong estimation (local) 8180432 8211526 115071 83981 CM091756.1 scf7180002754890 99.69 True indel: indel (> 5bp) 8177090 8180389 118405 115106 CM091756.1 scf7180002754890 99.24 True relocation, scaffold gap is present, inconsistency = -21887 8149201 8176747 167982 140635 CM091756.1 scf7180002754890 98.41 True indel: indel (> 5bp) 8148303 8149109 168824 168019 CM091756.1 scf7180002754890 99.5 True local misassembly 8104928 8147648 212405 169659 CM091756.1 scf7180002754890 99.87 True fake: scaffold gap size wrong estimation (local) 8087532 8105013 230753 213207 CM091756.1 scf7180002754890 99.29 True fake: scaffold gap size wrong estimation (local) 8080112 8087056 244521 237574 CM091756.1 scf7180002754890 99.34 True indel: indel (> 5bp) 8071325 8080062 253228 244549 CM091756.1 scf7180002754890 98.31 True indel: indel (<= 5bp) 8039738 8071315 284834 253241 CM091756.1 scf7180002754890 99.19 True relocation, scaffold gap is present, inconsistency = -47382 8031958 8039712 339993 332242 CM091756.1 scf7180002754890 98.66 True indel: indel (> 5bp) 7966684 8031915 404988 340069 CM091756.1 scf7180002754890 98.52 True relocation, scaffold gap is present, inconsistency = -42783 7943517 7966681 470966 447774 CM091756.1 scf7180002754890 99.37 True fake: scaffold gap size wrong estimation (local) 7918139 7938128 496484 476431 CM091756.1 scf7180002754890 99.0 True relocation, scaffold gap is present, inconsistency = -18503 7857401 7918047 575886 515079 CM091756.1 scf7180002754890 99.28 True fake: scaffold gap size wrong estimation (local) 7834589 7857316 598311 575984 CM091756.1 scf7180002754890 97.43 True fake: scaffold gap size wrong estimation (extensive) 7807185 7834609 635300 607836 CM091756.1 scf7180002754890 99.32 True fake: scaffold gap size wrong estimation (extensive) 7776843 7807184 673615 643442 CM091756.1 scf7180002754890 98.75 True relocation, scaffold gap is present, inconsistency = -14829 7735622 7776689 732133 688598 CM091756.1 scf7180002754890 98.99 True indel: indel (> 5bp) 7731013 7735577 736789 732215 CM091756.1 scf7180002754890 99.41 True fake: scaffold gap size wrong estimation (extensive) 7660090 7730961 816630 745548 CM091756.1 scf7180002754890 99.15 True indel: indel (> 5bp) 7576149 7659838 900673 816819 CM091756.1 scf7180002754890 99.15 True fake: scaffold gap size wrong estimation (local) 7563647 7576090 913215 900748 CM091756.1 scf7180002754890 99.41 True CONTIG scf7180002754890 913215 misassembled 9851884 9870758 1 18972 CM091755.1 scf7180002754891 98.9 True indel: indel (<= 5bp) 9870817 9872493 19035 20714 CM091755.1 scf7180002754891 99.35 True fake: scaffold gap size wrong estimation (local) 9872896 9942299 21116 90331 CM091755.1 scf7180002754891 99.22 True relocation, scaffold gap is present, inconsistency = -51856 9943011 9949106 142899 148990 CM091755.1 scf7180002754891 99.19 True fake: scaffold gap size wrong estimation (local) 9949436 9953668 149131 153374 CM091755.1 scf7180002754891 99.15 True fake: scaffold gap size wrong estimation (local) 9953655 9954420 157371 158136 CM091755.1 scf7180002754891 99.74 True indel: indel (<= 5bp) 9954424 9955637 158137 159350 CM091755.1 scf7180002754891 95.14 True fake: scaffold gap size wrong estimation (local) 9956119 9957672 159822 161375 CM091755.1 scf7180002754891 99.81 True fake: scaffold gap size wrong estimation (local) 9957955 9958702 161665 162412 CM091755.1 scf7180002754891 99.73 True fake: scaffold gap size wrong estimation (local) 9959299 9960030 162675 163406 CM091755.1 scf7180002754891 98.91 True indel: stretch of mismatches 9960075 9969725 163451 173142 CM091755.1 scf7180002754891 98.57 True local misassembly 9970633 9971628 173675 174670 CM091755.1 scf7180002754891 99.5 True relocation, scaffold gap is present, inconsistency = -10997 9971813 9979918 185852 193816 CM091755.1 scf7180002754891 97.36 True fake: scaffold gap size wrong estimation (local) 9980717 9983972 193837 197096 CM091755.1 scf7180002754891 99.23 True indel: indel (> 5bp) 9984064 10005115 197200 217925 CM091755.1 scf7180002754891 96.82 True relocation, scaffold gap is present, inconsistency = -24037 10005203 10010700 242050 247644 CM091755.1 scf7180002754891 98.75 True indel: indel (> 5bp) 10010836 10034254 247723 270722 CM091755.1 scf7180002754891 97.05 True translocation 11408170 11435219 270723 297814 CM091760.1 scf7180002754891 99.58 True fake: scaffold gap size wrong estimation (local) 11435228 11455461 303670 323908 CM091760.1 scf7180002754891 99.63 True relocation, scaffold gap is present, inconsistency = -19176 11455922 11481813 343545 369433 CM091760.1 scf7180002754891 99.65 True fake: scaffold gap size wrong estimation (extensive) 11481829 11491398 378087 387354 CM091760.1 scf7180002754891 96.29 True fake: scaffold gap size wrong estimation (local) 11490921 11511515 390216 410098 CM091760.1 scf7180002754891 95.88 True indel: indel (> 5bp) 11511628 11547311 410225 445493 CM091760.1 scf7180002754891 98.13 True fake: scaffold gap size wrong estimation (local) 11547315 11553622 446142 452386 CM091760.1 scf7180002754891 98.7 True fake: scaffold gap size wrong estimation (local) 11553625 11646543 455815 548169 CM091760.1 scf7180002754891 98.65 True fake: scaffold gap size wrong estimation (extensive) 11646570 11666951 556344 576725 CM091760.1 scf7180002754891 99.66 True fake: scaffold gap size wrong estimation (local) 11667435 11692122 576776 601509 CM091760.1 scf7180002754891 99.64 True indel: indel (> 5bp) 11692292 11789150 601665 698839 CM091760.1 scf7180002754891 99.46 True fake: scaffold gap size wrong estimation (local) 11789993 11839380 698966 748267 CM091760.1 scf7180002754891 99.32 True fake: scaffold gap size wrong estimation (local) 11839353 11866813 755140 782607 CM091760.1 scf7180002754891 99.64 True relocation, scaffold gap is present, inconsistency = -27571 11866808 11947541 810173 890877 CM091760.1 scf7180002754891 99.65 True CONTIG scf7180002754891 890877 misassembled 19089745 19101187 1 11402 CM091751.1 scf7180002754892 98.52 True fake: scaffold gap size wrong estimation (local) 19101349 19108642 11551 18813 CM091751.1 scf7180002754892 98.64 True indel: indel (> 5bp) 19108738 19123360 18893 33497 CM091751.1 scf7180002754892 99.25 True fake: scaffold gap size wrong estimation (local) 19123856 19141693 33958 51686 CM091751.1 scf7180002754892 98.58 True fake: scaffold gap size wrong estimation (extensive) 19142066 19145953 61569 65464 CM091751.1 scf7180002754892 99.23 True fake: scaffold gap size wrong estimation (local) 19150198 19150765 73845 74412 CM091751.1 scf7180002754892 99.65 True indel: indel (<= 5bp) 19150916 19151581 74565 75230 CM091751.1 scf7180002754892 99.7 True local misassembly 19152226 19153304 75295 76373 CM091751.1 scf7180002754892 99.44 True indel: stretch of mismatches 19153733 19154625 76802 77694 CM091751.1 scf7180002754892 99.78 True indel: indel (<= 5bp) 19154626 19155970 77696 79040 CM091751.1 scf7180002754892 99.18 True local misassembly 19156974 19157935 80085 81046 CM091751.1 scf7180002754892 98.96 True fake: scaffold gap size wrong estimation (local) 19159514 19164234 83277 87997 CM091751.1 scf7180002754892 99.26 True fake: scaffold gap size wrong estimation (local) 19164664 19165917 88419 89672 CM091751.1 scf7180002754892 99.36 True indel: indel (> 5bp) 19166353 19168489 90100 92236 CM091751.1 scf7180002754892 99.34 True indel: indel (<= 5bp) 19168617 19169832 92363 93578 CM091751.1 scf7180002754892 98.93 True local misassembly 19172339 19173830 94507 95998 CM091751.1 scf7180002754892 99.26 True indel: indel (<= 5bp) 19173831 19174848 96000 97017 CM091751.1 scf7180002754892 99.02 True indel: indel (> 5bp) 19174896 19175615 97024 97743 CM091751.1 scf7180002754892 99.17 True indel: indel (<= 5bp) 19175616 19176639 97745 98768 CM091751.1 scf7180002754892 99.51 True indel: indel (> 5bp) 19176703 19177232 98823 99352 CM091751.1 scf7180002754892 99.06 True indel: indel (<= 5bp) 19177235 19179123 99353 101241 CM091751.1 scf7180002754892 99.36 True indel: indel (<= 5bp) 19179124 19179749 101244 101869 CM091751.1 scf7180002754892 99.52 True relocation, scaffold gap is present, inconsistency = -12179 19181604 19183156 115903 117431 CM091751.1 scf7180002754892 97.49 True indel: indel (> 5bp) 19183205 19185259 117544 119599 CM091751.1 scf7180002754892 99.08 True fake: scaffold gap size wrong estimation (local) 19186356 19189433 119925 123004 CM091751.1 scf7180002754892 98.96 True fake: scaffold gap size wrong estimation (local) 19189731 19193122 125895 129309 CM091751.1 scf7180002754892 98.88 True fake: scaffold gap size wrong estimation (local) 19193392 19194597 129582 130788 CM091751.1 scf7180002754892 99.25 True indel: indel (> 5bp) 19194638 19203093 130814 138974 CM091751.1 scf7180002754892 95.15 True fake: scaffold gap size wrong estimation (local) 19203993 19215353 140327 151500 CM091751.1 scf7180002754892 97.31 True relocation, scaffold gap is present, inconsistency = -10998 19215949 19216845 163094 163990 CM091751.1 scf7180002754892 99.55 True indel: indel (<= 5bp) 19216848 19220960 163991 168103 CM091751.1 scf7180002754892 98.86 True indel: indel (<= 5bp) 19220961 19221817 168107 168963 CM091751.1 scf7180002754892 99.77 True fake: scaffold gap size wrong estimation (local) 19223032 19224832 169715 171515 CM091751.1 scf7180002754892 99.67 True fake: scaffold gap size wrong estimation (local) 19225619 19226358 174931 175670 CM091751.1 scf7180002754892 99.05 True indel: indel (> 5bp) 19226812 19228093 176102 177383 CM091751.1 scf7180002754892 99.22 True indel: indel (<= 5bp) 19228095 19228833 177384 178122 CM091751.1 scf7180002754892 99.73 True indel: indel (<= 5bp) 19229000 19231178 178287 180465 CM091751.1 scf7180002754892 99.91 True local misassembly 19234551 19235281 181095 181825 CM091751.1 scf7180002754892 99.86 True local misassembly 19238176 19239129 184590 185543 CM091751.1 scf7180002754892 99.48 True local misassembly 19239803 19240731 186218 187146 CM091751.1 scf7180002754892 99.68 True indel: indel (<= 5bp) 19240732 19241314 187148 187730 CM091751.1 scf7180002754892 98.8 True indel: indel (<= 5bp) 19241377 19243927 187796 190299 CM091751.1 scf7180002754892 97.45 True indel: indel (> 5bp) 19243990 19273067 190434 219472 CM091751.1 scf7180002754892 99.17 True relocation, scaffold gap is present, inconsistency = -39085 19273321 19273915 258811 259405 CM091751.1 scf7180002754892 100.0 True indel: indel (<= 5bp) 19273916 19275056 259407 260547 CM091751.1 scf7180002754892 99.74 True fake: scaffold gap size wrong estimation (local) 19275610 19277781 260645 262816 CM091751.1 scf7180002754892 99.68 True indel: indel (<= 5bp) 19277782 19279773 262818 264809 CM091751.1 scf7180002754892 99.65 True indel: indel (> 5bp) 19279774 19281696 264818 266740 CM091751.1 scf7180002754892 98.96 True indel: indel (<= 5bp) 19281701 19282312 266743 267354 CM091751.1 scf7180002754892 99.35 True fake: scaffold gap size wrong estimation (local) 19292715 19296303 274558 278154 CM091751.1 scf7180002754892 99.4 True fake: scaffold gap size wrong estimation (local) 19296521 19299496 278258 281218 CM091751.1 scf7180002754892 98.72 True fake: scaffold gap size wrong estimation (local) 19299621 19309538 283701 293439 CM091751.1 scf7180002754892 97.25 True fake: scaffold gap size wrong estimation (local) 19310904 19312013 297626 298735 CM091751.1 scf7180002754892 99.28 True indel: indel (<= 5bp) 19312014 19313569 298737 300292 CM091751.1 scf7180002754892 99.42 True fake: scaffold gap size wrong estimation (local) 19317711 19319557 300615 302461 CM091751.1 scf7180002754892 99.19 True indel: indel (<= 5bp) 19319559 19320481 302462 303384 CM091751.1 scf7180002754892 98.81 True indel: indel (<= 5bp) 19320483 19321009 303385 303911 CM091751.1 scf7180002754892 98.1 True indel: indel (<= 5bp) 19321010 19321545 303913 304448 CM091751.1 scf7180002754892 98.51 True fake: scaffold gap size wrong estimation (local) 19324749 19329146 304689 309094 CM091751.1 scf7180002754892 99.27 True local misassembly 19330770 19331572 310160 310962 CM091751.1 scf7180002754892 99.13 True local misassembly 19332366 19335263 311756 314653 CM091751.1 scf7180002754892 99.48 True local misassembly 19336325 19337086 314654 315415 CM091751.1 scf7180002754892 97.24 True indel: indel (> 5bp) 19337364 19340530 315701 318867 CM091751.1 scf7180002754892 99.62 True indel: indel (<= 5bp) 19340531 19341033 318869 319371 CM091751.1 scf7180002754892 99.2 True relocation, scaffold gap is present, inconsistency = -19235 19321819 19324515 319392 322081 CM091751.1 scf7180002754892 98.93 True fake: scaffold gap size wrong estimation (local) 19340987 19342277 334927 336215 CM091751.1 scf7180002754892 98.76 True fake: scaffold gap size wrong estimation (local) 19342378 19342993 339508 340123 CM091751.1 scf7180002754892 99.19 True indel: indel (<= 5bp) 19342994 19343582 340125 340713 CM091751.1 scf7180002754892 98.98 True local misassembly 19344149 19344715 340855 341421 CM091751.1 scf7180002754892 98.94 True indel: indel (<= 5bp) 19344912 19345464 341621 342173 CM091751.1 scf7180002754892 99.1 True indel: indel (<= 5bp) 19345466 19346079 342174 342787 CM091751.1 scf7180002754892 99.35 True fake: scaffold gap size wrong estimation (local) 19347597 19348308 345354 346065 CM091751.1 scf7180002754892 99.58 True fake: scaffold gap size wrong estimation (local) 19349918 19350840 347027 347949 CM091751.1 scf7180002754892 98.7 True local misassembly 19350959 19353396 348650 351117 CM091751.1 scf7180002754892 97.85 True fake: scaffold gap size wrong estimation (local) 19354234 19372210 356177 374161 CM091751.1 scf7180002754892 98.51 True fake: scaffold gap size wrong estimation (local) 19372475 19375121 380976 383624 CM091751.1 scf7180002754892 98.83 True fake: scaffold gap size wrong estimation (local) 19375149 19377094 386282 388302 CM091751.1 scf7180002754892 98.01 True indel: indel (> 5bp) 19377143 19384187 388386 395358 CM091751.1 scf7180002754892 96.92 True local misassembly 19384774 19390529 395359 401120 CM091751.1 scf7180002754892 98.87 True fake: scaffold gap size wrong estimation (local) 19390501 19393372 401932 404816 CM091751.1 scf7180002754892 99.06 True fake: scaffold gap size wrong estimation (local) 19393488 19401491 404921 412731 CM091751.1 scf7180002754892 95.22 True translocation 4620647 4621177 412732 413262 CM091768.1 scf7180002754892 99.25 True CONTIG scf7180002754892 413262 misassembled 915996 1043819 128051 50 CM091765.1 scf7180002754893 99.19 True relocation, scaffold gap is present, inconsistency = -75328 912497 915533 206880 203842 CM091765.1 scf7180002754893 99.37 True fake: scaffold gap size wrong estimation (local) 880880 912346 238361 206984 CM091765.1 scf7180002754893 99.01 True fake: scaffold gap size wrong estimation (local) 855944 880908 267213 242220 CM091765.1 scf7180002754893 99.5 True relocation, scaffold gap is present, inconsistency = -12186 740778 855779 394621 279564 CM091765.1 scf7180002754893 99.23 True relocation, scaffold gap is present, inconsistency = -99307 687287 740748 547318 493958 CM091765.1 scf7180002754893 99.07 True relocation, scaffold gap is present, inconsistency = -40836 662680 687005 612712 588436 CM091765.1 scf7180002754893 99.46 True relocation, scaffold gap is present, inconsistency = -23994 651581 662634 647841 636752 CM091765.1 scf7180002754893 98.87 True indel: indel (> 5bp) 616673 651526 683238 647879 CM091765.1 scf7180002754893 98.91 True fake: scaffold gap size wrong estimation (local) 388727 616475 911326 683425 CM091765.1 scf7180002754893 99.57 True fake: scaffold gap size wrong estimation (local) 386009 388556 914089 911542 CM091765.1 scf7180002754893 99.76 True indel: indel (<= 5bp) 383982 386008 916117 914091 CM091765.1 scf7180002754893 99.26 True indel: indel (> 5bp) 382450 383981 917658 916127 CM091765.1 scf7180002754893 99.93 True indel: indel (<= 5bp) 381363 382400 918750 917713 CM091765.1 scf7180002754893 100.0 True indel: indel (<= 5bp) 380381 381067 919731 919045 CM091765.1 scf7180002754893 100.0 True fake: scaffold gap size wrong estimation (local) 378663 380191 921482 919954 CM091765.1 scf7180002754893 99.93 True indel: stretch of mismatches 372313 378573 927832 921572 CM091765.1 scf7180002754893 99.82 True indel: indel (<= 5bp) 370191 372308 929956 927839 CM091765.1 scf7180002754893 99.72 True relocation, inconsistency = 13285 355871 356810 930991 930052 CM091765.1 scf7180002754893 99.68 True local misassembly 354618 355491 932110 931237 CM091765.1 scf7180002754893 99.66 True local misassembly 351870 353256 934569 933183 CM091765.1 scf7180002754893 99.42 True indel: indel (> 5bp) 350896 351434 935524 934986 CM091765.1 scf7180002754893 99.26 True local misassembly 349356 350221 937061 936196 CM091765.1 scf7180002754893 99.77 True indel: indel (> 5bp) 348838 349355 937585 937068 CM091765.1 scf7180002754893 99.61 True indel: indel (<= 5bp) 348105 348827 938315 937593 CM091765.1 scf7180002754893 99.86 True indel: indel (> 5bp) 347119 348016 939289 938392 CM091765.1 scf7180002754893 99.67 True indel: indel (> 5bp) 344650 347039 941745 939356 CM091765.1 scf7180002754893 99.79 True indel: indel (> 5bp) 343897 344633 942482 941746 CM091765.1 scf7180002754893 99.19 True local misassembly 341772 342879 944598 943491 CM091765.1 scf7180002754893 99.82 True indel: indel (> 5bp) 340497 341320 945862 945039 CM091765.1 scf7180002754893 99.76 True indel: indel (> 5bp) 338233 340440 948070 945863 CM091765.1 scf7180002754893 99.86 True local misassembly 336454 337896 949712 948274 CM091765.1 scf7180002754893 98.07 True local misassembly 326007 336045 959497 949751 CM091765.1 scf7180002754893 96.55 True indel: indel (> 5bp) 322629 325900 962832 959561 CM091765.1 scf7180002754893 99.97 True local misassembly 320774 322119 964687 963342 CM091765.1 scf7180002754893 99.7 True local misassembly 314191 319302 970362 965416 CM091765.1 scf7180002754893 95.37 True local misassembly 297046 313666 986775 970527 CM091765.1 scf7180002754893 97.07 True fake: scaffold gap size wrong estimation (local) 273382 279663 1010567 1004256 CM091765.1 scf7180002754893 99.68 True indel: indel (> 5bp) 260609 273353 1023216 1010613 CM091765.1 scf7180002754893 98.1 True fake: scaffold gap size wrong estimation (local) 221467 260413 1063332 1024343 CM091765.1 scf7180002754893 99.59 True indel: indel (<= 5bp) 152245 221433 1132554 1063368 CM091765.1 scf7180002754893 99.23 True fake: scaffold gap size wrong estimation (local) 55591 151986 1228695 1132682 CM091765.1 scf7180002754893 99.13 True indel: indel (> 5bp) 49958 55297 1234339 1229008 CM091765.1 scf7180002754893 99.12 True local misassembly 20354 49770 1264159 1234408 CM091765.1 scf7180002754893 98.66 True CONTIG scf7180002754893 1264159 misassembled 14481997 14500069 76 18070 CM091757.1 scf7180002754894 99.15 True fake: scaffold gap size wrong estimation (extensive) 14500199 14501766 26460 28026 CM091757.1 scf7180002754894 99.43 True translocation, scaffold gap is present 4957858 4967035 37363 28158 CM091753.1 scf7180002754894 99.29 True fake: scaffold gap size wrong estimation (local) 4792450 4957219 199448 37470 CM091753.1 scf7180002754894 97.41 True indel: indel (> 5bp) 4777326 4792403 214580 199509 CM091753.1 scf7180002754894 99.58 True fake: scaffold gap size wrong estimation (local) 4673268 4777233 318010 214671 CM091753.1 scf7180002754894 98.72 True local misassembly 4629612 4672625 361715 318642 CM091753.1 scf7180002754894 99.51 True local misassembly 4577629 4628865 413316 362485 CM091753.1 scf7180002754894 98.6 True fake: scaffold gap size wrong estimation (local) 4530843 4577425 460113 413480 CM091753.1 scf7180002754894 99.5 True fake: scaffold gap size wrong estimation (local) 4517030 4518603 473606 472033 CM091753.1 scf7180002754894 99.87 True indel: indel (<= 5bp) 4515581 4517020 475057 473618 CM091753.1 scf7180002754894 99.86 True indel: indel (<= 5bp) 4514228 4515580 476411 475059 CM091753.1 scf7180002754894 99.93 True indel: indel (<= 5bp) 4513151 4513754 477491 476888 CM091753.1 scf7180002754894 99.67 True indel: indel (<= 5bp) 4512201 4512975 478445 477671 CM091753.1 scf7180002754894 98.97 True local misassembly 4509965 4511495 480678 479148 CM091753.1 scf7180002754894 99.61 True indel: indel (> 5bp) 4509200 4509956 481435 480679 CM091753.1 scf7180002754894 100.0 True indel: indel (<= 5bp) 4508543 4509199 482093 481437 CM091753.1 scf7180002754894 99.09 True indel: indel (<= 5bp) 4507488 4508542 483150 482096 CM091753.1 scf7180002754894 99.91 True indel: indel (<= 5bp) 4501974 4507487 488665 483152 CM091753.1 scf7180002754894 99.89 True indel: indel (<= 5bp) 4501290 4501973 489350 488667 CM091753.1 scf7180002754894 98.83 True local misassembly 4499251 4500034 490134 489351 CM091753.1 scf7180002754894 99.49 True indel: indel (<= 5bp) 4498325 4499250 491061 490136 CM091753.1 scf7180002754894 99.46 True local misassembly 4471484 4497821 518316 491584 CM091753.1 scf7180002754894 96.3 True fake: scaffold gap size wrong estimation (local) 4437768 4471361 552041 518416 CM091753.1 scf7180002754894 99.32 True translocation 10648915 10671957 575085 552042 CM091765.1 scf7180002754894 99.94 True translocation, scaffold gap is present 4430879 4437919 582524 575106 CM091753.1 scf7180002754894 95.12 True translocation, scaffold gap is present 10604410 10648977 641531 598527 CM091765.1 scf7180002754894 95.2 True CONTIG scf7180002754894 641531 misassembled 124741 155661 30673 1 CM091753.1 scf7180002754895 98.77 True fake: scaffold gap size wrong estimation (local) 123498 124597 33406 32309 CM091753.1 scf7180002754895 99.73 True fake: scaffold gap size wrong estimation (local) 117959 122226 38107 33839 CM091753.1 scf7180002754895 99.84 True fake: not a misassembly (possible transposable element) 16662692 16665915 41615 38392 CM091756.1 scf7180002754895 99.97 True fake: not a misassembly (possible transposable element) 114580 117756 44840 41636 CM091753.1 scf7180002754895 99.13 True fake: scaffold gap size wrong estimation (local) 113097 114023 48582 47656 CM091753.1 scf7180002754895 100.0 True fake: scaffold gap size wrong estimation (local) 105677 109193 52118 48603 CM091753.1 scf7180002754895 99.91 True translocation, scaffold gap is present 16662163 16662676 53363 52850 CM091756.1 scf7180002754895 100.0 True fake: scaffold gap size wrong estimation (local) 16650679 16661995 65068 53752 CM091756.1 scf7180002754895 100.0 True translocation, scaffold gap is present 110510 113080 67662 65089 CM091753.1 scf7180002754895 100.0 True fake: scaffold gap size wrong estimation (local) 103706 105014 70715 69407 CM091753.1 scf7180002754895 100.0 True translocation, scaffold gap is present 16622899 16650669 105472 77700 CM091756.1 scf7180002754895 99.83 True fake: scaffold gap size wrong estimation (local) 16614525 16622816 113883 105589 CM091756.1 scf7180002754895 99.75 True fake: scaffold gap size wrong estimation (local) 16488906 16613926 240387 115298 CM091756.1 scf7180002754895 99.79 True relocation, scaffold gap is present, inconsistency = -42336 16434925 16488828 336734 282801 CM091756.1 scf7180002754895 99.85 True relocation, scaffold gap is present, inconsistency = -53480 16356071 16434907 469099 390232 CM091756.1 scf7180002754895 99.83 True relocation, scaffold gap is present, inconsistency = -51436 16352002 16355853 524603 520753 CM091756.1 scf7180002754895 99.82 True fake: scaffold gap size wrong estimation (local) 16350367 16351994 529791 528131 CM091756.1 scf7180002754895 99.02 True fake: scaffold gap size wrong estimation (local) 16335752 16349849 544168 530062 CM091756.1 scf7180002754895 99.79 True indel: indel (<= 5bp) 16321984 16335644 557948 544277 CM091756.1 scf7180002754895 99.86 True CONTIG scf7180002754895 557948 misassembled 6823587 6827382 1 3796 CM091767.1 scf7180002754896 99.63 True local misassembly 6827723 6828995 3797 5069 CM091767.1 scf7180002754896 99.84 True fake: scaffold gap size wrong estimation (local) 6831408 6871192 6736 46539 CM091767.1 scf7180002754896 99.62 True fake: scaffold gap size wrong estimation (local) 6871331 6873418 46676 48763 CM091767.1 scf7180002754896 99.62 True fake: scaffold gap size wrong estimation (local) 6874837 6875475 49055 49693 CM091767.1 scf7180002754896 95.77 True indel: indel (> 5bp) 6875489 6876192 49694 50397 CM091767.1 scf7180002754896 99.01 True indel: indel (> 5bp) 6876417 6876988 50636 51207 CM091767.1 scf7180002754896 98.25 True fake: scaffold gap size wrong estimation (local) 6877272 6881176 52478 56381 CM091767.1 scf7180002754896 99.21 True local misassembly 6881677 6882526 56919 57768 CM091767.1 scf7180002754896 98.94 True indel: indel (<= 5bp) 6882528 6883110 57769 58351 CM091767.1 scf7180002754896 98.46 True indel: indel (<= 5bp) 6883389 6884112 58632 59355 CM091767.1 scf7180002754896 99.59 True indel: indel (<= 5bp) 6884113 6884776 59358 60021 CM091767.1 scf7180002754896 99.25 True local misassembly 6885439 6886143 60402 61106 CM091767.1 scf7180002754896 99.43 True indel: indel (<= 5bp) 6886378 6887742 61346 62710 CM091767.1 scf7180002754896 99.27 True local misassembly 6888705 6890318 63056 64669 CM091767.1 scf7180002754896 99.69 True local misassembly 6890706 6894537 64670 68501 CM091767.1 scf7180002754896 98.56 True indel: indel (> 5bp) 6895049 6896170 68988 70109 CM091767.1 scf7180002754896 98.93 True relocation, scaffold gap is present, inconsistency = -17313 6894030 6895041 85282 86292 CM091767.1 scf7180002754896 97.63 True fake: scaffold gap size wrong estimation (local) 6896059 6940449 87311 131203 CM091767.1 scf7180002754896 98.21 True CONTIG scf7180002754896 131203 misassembled 13776149 13780217 1 4067 CM091758.1 scf7180002754897 99.85 True fake: scaffold gap size wrong estimation (local) 13780981 13790601 4831 14456 CM091758.1 scf7180002754897 99.69 True fake: scaffold gap size wrong estimation (local) 13790741 13795315 15868 20443 CM091758.1 scf7180002754897 99.28 True fake: scaffold gap size wrong estimation (local) 13795525 13806770 24094 35340 CM091758.1 scf7180002754897 99.89 True fake: scaffold gap size wrong estimation (local) 13808011 13828411 38167 58591 CM091758.1 scf7180002754897 99.61 True relocation, scaffold gap is present, inconsistency = -20557 13828800 13847213 79537 97722 CM091758.1 scf7180002754897 98.39 True local misassembly 13847835 13864522 97723 114405 CM091758.1 scf7180002754897 99.21 True translocation 1794929 1805917 114406 125398 CM091753.1 scf7180002754897 99.43 True relocation, scaffold gap is present, inconsistency = -45164 1794326 1794944 158971 159589 CM091753.1 scf7180002754897 98.38 True fake: scaffold gap size wrong estimation (local) 1805962 1818788 170689 183516 CM091753.1 scf7180002754897 99.85 True CONTIG scf7180002754897 183524 misassembled 3283959 3309198 25212 1 CM091753.1 scf7180002754898 99.42 True local misassembly 3208686 3280333 96870 25213 CM091753.1 scf7180002754898 99.41 True fake: scaffold gap size wrong estimation (local) 3177346 3208370 128527 97529 CM091753.1 scf7180002754898 99.34 True relocation, scaffold gap is present, inconsistency = -26977 3116230 3177277 216569 155573 CM091753.1 scf7180002754898 99.27 True indel: indel (> 5bp) 3097642 3116158 235144 216624 CM091753.1 scf7180002754898 99.65 True fake: scaffold gap size wrong estimation (local) 3032994 3097200 299811 235543 CM091753.1 scf7180002754898 99.52 True relocation, scaffold gap is present, inconsistency = -60839 2970220 3032868 423098 360776 CM091753.1 scf7180002754898 99.1 True relocation, scaffold gap is present, inconsistency = -53617 2958356 2970195 488638 476740 CM091753.1 scf7180002754898 99.52 True indel: indel (> 5bp) 2723836 2958296 718442 488704 CM091753.1 scf7180002754898 97.57 True CONTIG scf7180002754898 718442 misassembled 2590471 2591675 1 1206 CM091754.1 scf7180002754899 99.59 True fake: scaffold gap size wrong estimation (local) 2593497 2598978 2547 8016 CM091754.1 scf7180002754899 98.24 True fake: scaffold gap size wrong estimation (local) 2599347 2621859 8119 30675 CM091754.1 scf7180002754899 99.48 True relocation, scaffold gap is present, inconsistency = -22009 2621858 2626938 52683 57763 CM091754.1 scf7180002754899 99.86 True translocation 6898935 6956184 57764 114980 CM091753.1 scf7180002754899 99.32 True relocation, scaffold gap is present, inconsistency = -51797 6934870 6935441 145463 146059 CM091753.1 scf7180002754899 97.38 True fake: scaffold gap size wrong estimation (local) 6947297 6948204 157887 158795 CM091753.1 scf7180002754899 99.85 True fake: scaffold gap size wrong estimation (local) 6956192 6991054 166780 201680 CM091753.1 scf7180002754899 99.35 True fake: scaffold gap size wrong estimation (local) 6991193 7024954 205259 239510 CM091753.1 scf7180002754899 99.11 True indel: indel (<= 5bp) 7024989 7133464 239540 347867 CM091753.1 scf7180002754899 99.33 True relocation, scaffold gap is present, inconsistency = -73122 7104502 7105001 392027 392526 CM091753.1 scf7180002754899 99.75 True fake: scaffold gap size wrong estimation (local) 7133453 7134827 421085 422459 CM091753.1 scf7180002754899 99.2 True relocation, inconsistency = 5454277 1621375 1679168 480128 422467 CM091753.1 scf7180002754899 99.6 True fake: scaffold gap size wrong estimation (local) 1616897 1620391 483642 480149 CM091753.1 scf7180002754899 99.86 True fake: scaffold gap size wrong estimation (local) 1603147 1616912 500934 487322 CM091753.1 scf7180002754899 98.59 True indel: indel (> 5bp) 1600334 1603079 503730 501010 CM091753.1 scf7180002754899 98.91 True fake: scaffold gap size wrong estimation (extensive) 1591410 1600345 521489 512496 CM091753.1 scf7180002754899 99.72 True fake: scaffold gap size wrong estimation (local) 1542475 1590243 575651 527890 CM091753.1 scf7180002754899 99.93 True fake: scaffold gap size wrong estimation (local) 1529511 1542125 588598 575981 CM091753.1 scf7180002754899 99.9 True relocation, scaffold gap is present, inconsistency = 27210 1473088 1479989 617811 610910 CM091753.1 scf7180002754899 99.75 True indel: indel (<= 5bp) 1470916 1473087 619988 617817 CM091753.1 scf7180002754899 100.0 True indel: indel (<= 5bp) 1466901 1470915 624004 619990 CM091753.1 scf7180002754899 99.5 True local misassembly 1463356 1465503 626152 624005 CM091753.1 scf7180002754899 99.91 True indel: indel (<= 5bp) 1459165 1463355 630344 626154 CM091753.1 scf7180002754899 99.95 True local misassembly 1457215 1458697 631827 630345 CM091753.1 scf7180002754899 99.93 True local misassembly 1399875 1457114 690413 633164 CM091753.1 scf7180002754899 99.91 True CONTIG scf7180002754899 690413 misassembled 4047016 4053151 1 6339 CM091761.1 scf7180002754900 95.94 True indel: indel (> 5bp) 4053479 4073289 6735 26223 CM091761.1 scf7180002754900 96.96 True relocation, inconsistency = 27166 4101434 4104448 27202 30214 CM091761.1 scf7180002754900 99.14 True fake: scaffold gap size wrong estimation (local) 4104858 4110068 31281 36479 CM091761.1 scf7180002754900 99.0 True fake: scaffold gap size wrong estimation (local) 4110082 4158896 41334 88292 CM091761.1 scf7180002754900 95.2 True relocation, scaffold gap is present, inconsistency = -20925 4158814 4212110 109135 161993 CM091761.1 scf7180002754900 98.52 True relocation, scaffold gap is present, inconsistency = -10220 4212163 4292749 172266 252886 CM091761.1 scf7180002754900 99.49 True relocation, scaffold gap is present, inconsistency = -58607 4272709 4273328 291453 292072 CM091761.1 scf7180002754900 99.8 True fake: scaffold gap size wrong estimation (local) 4293084 4294332 311324 312572 CM091761.1 scf7180002754900 98.16 True indel: indel (> 5bp) 4294641 4295162 312892 313413 CM091761.1 scf7180002754900 99.43 True indel: indel (<= 5bp) 4295163 4295769 313415 314021 CM091761.1 scf7180002754900 99.51 True indel: stretch of mismatches 4295933 4296559 314185 314811 CM091761.1 scf7180002754900 99.36 True indel: indel (<= 5bp) 4296849 4298220 315100 316471 CM091761.1 scf7180002754900 99.64 True indel: indel (<= 5bp) 4298690 4299813 316940 318063 CM091761.1 scf7180002754900 99.91 True indel: indel (<= 5bp) 4300262 4300853 318510 319101 CM091761.1 scf7180002754900 100.0 True indel: indel (<= 5bp) 4300855 4301402 319102 319649 CM091761.1 scf7180002754900 98.91 True local misassembly 4301923 4302757 320166 320998 CM091761.1 scf7180002754900 98.92 True fake: scaffold gap size wrong estimation (extensive) 4302835 4335222 330634 363067 CM091761.1 scf7180002754900 99.47 True relocation, scaffold gap is present, inconsistency = -16951 4335440 4364398 380236 409174 CM091761.1 scf7180002754900 99.03 True relocation, scaffold gap is present, inconsistency = -13203 4364561 4366823 422540 424799 CM091761.1 scf7180002754900 99.43 True fake: scaffold gap size wrong estimation (local) 4366993 4383688 424983 441689 CM091761.1 scf7180002754900 99.12 True fake: scaffold gap size wrong estimation (local) 4383852 4402047 441847 460035 CM091761.1 scf7180002754900 99.36 True relocation, scaffold gap is present, inconsistency = 213266 4618655 4619261 463983 463377 CM091761.1 scf7180002754900 99.51 True indel: indel (<= 5bp) 4615513 4618652 467123 463984 CM091761.1 scf7180002754900 99.84 True fake: scaffold gap size wrong estimation (local) 4613621 4614499 468654 467776 CM091761.1 scf7180002754900 99.77 True indel: indel (<= 5bp) 4612963 4613620 469314 468657 CM091761.1 scf7180002754900 100.0 True indel: indel (<= 5bp) 4612017 4612962 470261 469316 CM091761.1 scf7180002754900 99.89 True indel: indel (> 5bp) 4589977 4611947 492297 470340 CM091761.1 scf7180002754900 99.58 True relocation, scaffold gap is present, inconsistency = -24898 4562461 4589979 544717 517193 CM091761.1 scf7180002754900 99.17 True indel: indel (> 5bp) 4553213 4562428 553675 544759 CM091761.1 scf7180002754900 95.54 True fake: scaffold gap size wrong estimation (local) 4538301 4552331 567564 554000 CM091761.1 scf7180002754900 96.06 True fake: scaffold gap size wrong estimation (extensive) 4535530 4538288 578153 575403 CM091761.1 scf7180002754900 99.2 True fake: scaffold gap size wrong estimation (local) 4532855 4535007 580513 578376 CM091761.1 scf7180002754900 97.91 True local misassembly 4531000 4531788 581302 580514 CM091761.1 scf7180002754900 99.26 True fake: scaffold gap size wrong estimation (local) 4529266 4530008 583070 582328 CM091761.1 scf7180002754900 99.46 True local misassembly 4528367 4528882 583595 583080 CM091761.1 scf7180002754900 98.64 True indel: indel (<= 5bp) 4527852 4528366 584112 583598 CM091761.1 scf7180002754900 99.03 True indel: stretch of mismatches 4526907 4527511 585057 584453 CM091761.1 scf7180002754900 97.52 True indel: indel (> 5bp) 4521281 4526674 590844 585308 CM091761.1 scf7180002754900 97.25 True local misassembly 4505417 4520948 606121 590845 CM091761.1 scf7180002754900 97.57 True indel: indel (> 5bp) 4491944 4505315 619530 606171 CM091761.1 scf7180002754900 99.29 True fake: not a misassembly (possible transposable element) 4479471 4481704 621789 619551 CM091761.1 scf7180002754900 98.71 True fake: not a misassembly (possible transposable element) 4489967 4491956 624979 622988 CM091761.1 scf7180002754900 99.1 True local misassembly 4486359 4489354 628216 625221 CM091761.1 scf7180002754900 98.83 True fake: scaffold gap size wrong estimation (local) 4467080 4478735 640674 629034 CM091761.1 scf7180002754900 98.61 True relocation, scaffold gap is present, inconsistency = -23057 4482746 4485828 648081 644983 CM091761.1 scf7180002754900 98.77 True fake: scaffold gap size wrong estimation (extensive) 4460266 4467074 661834 655014 CM091761.1 scf7180002754900 99.16 True CONTIG scf7180002754900 661834 misassembled 1946862 1952834 1 5949 CM091755.1 scf7180002754901 99.15 True fake: scaffold gap size wrong estimation (local) 1952945 2061622 6069 114818 CM091755.1 scf7180002754901 99.72 True indel: indel (> 5bp) 2061665 2076123 114869 129309 CM091755.1 scf7180002754901 99.65 True relocation, scaffold gap is present, inconsistency = -39353 2076686 2187375 169225 279483 CM091755.1 scf7180002754901 99.25 True fake: scaffold gap size wrong estimation (local) 2188614 2205981 280416 297803 CM091755.1 scf7180002754901 99.7 True relocation, scaffold gap is present, inconsistency = -17100 2205970 2273593 314892 381703 CM091755.1 scf7180002754901 98.39 True fake: scaffold gap size wrong estimation (local) 2273743 2325784 382857 434854 CM091755.1 scf7180002754901 99.45 True relocation, scaffold gap is present, inconsistency = -46438 2325941 2354123 481449 511215 CM091755.1 scf7180002754901 96.45 True fake: scaffold gap size wrong estimation (local) 2354828 2365134 518879 529205 CM091755.1 scf7180002754901 99.16 True fake: scaffold gap size wrong estimation (local) 2365134 2412068 534770 580925 CM091755.1 scf7180002754901 97.41 True relocation, scaffold gap is present, inconsistency = -10505 2412628 2414122 591990 593484 CM091755.1 scf7180002754901 99.67 True indel: indel (> 5bp) 2414123 2415013 593491 594381 CM091755.1 scf7180002754901 99.1 True indel: indel (<= 5bp) 2415014 2420542 594383 599911 CM091755.1 scf7180002754901 99.78 True indel: indel (> 5bp) 2420667 2421407 600016 600756 CM091755.1 scf7180002754901 99.46 True indel: indel (<= 5bp) 2421409 2423648 600757 602996 CM091755.1 scf7180002754901 98.75 True local misassembly 2424225 2425462 603580 604817 CM091755.1 scf7180002754901 99.68 True indel: indel (<= 5bp) 2425586 2427491 604938 606843 CM091755.1 scf7180002754901 99.42 True indel: indel (> 5bp) 2427492 2429493 606855 608856 CM091755.1 scf7180002754901 99.6 True local misassembly 2431332 2431916 608991 609575 CM091755.1 scf7180002754901 98.63 True indel: indel (> 5bp) 2432210 2434995 609879 612664 CM091755.1 scf7180002754901 99.46 True indel: indel (> 5bp) 2435007 2436703 612665 614361 CM091755.1 scf7180002754901 99.59 True local misassembly 2437256 2438291 614891 615926 CM091755.1 scf7180002754901 99.32 True fake: scaffold gap size wrong estimation (local) 2438408 2601406 616012 778787 CM091755.1 scf7180002754901 99.51 True fake: scaffold gap size wrong estimation (local) 2601493 2732261 779624 910266 CM091755.1 scf7180002754901 99.66 True relocation, scaffold gap is present, inconsistency = -122677 2732298 2741000 1032980 1041676 CM091755.1 scf7180002754901 99.87 True CONTIG scf7180002754901 1041676 misassembled 3342519 3345357 329 3169 CM091764.1 scf7180002754902 99.58 True indel: indel (> 5bp) 3345393 3355573 3238 13420 CM091764.1 scf7180002754902 99.78 True fake: scaffold gap size wrong estimation (local) 3355950 3387122 13780 44480 CM091764.1 scf7180002754902 98.15 True fake: scaffold gap size wrong estimation (local) 3387146 3414389 48457 75646 CM091764.1 scf7180002754902 99.05 True fake: scaffold gap size wrong estimation (local) 3414663 3482260 75684 143287 CM091764.1 scf7180002754902 99.58 True fake: scaffold gap size wrong estimation (local) 3482689 3523786 146868 188005 CM091764.1 scf7180002754902 99.59 True relocation, scaffold gap is present, inconsistency = -11407 3523825 3555752 199451 231393 CM091764.1 scf7180002754902 99.5 True indel: indel (> 5bp) 3555786 3571591 231451 246851 CM091764.1 scf7180002754902 96.79 True fake: scaffold gap size wrong estimation (local) 3571610 3578911 249197 256497 CM091764.1 scf7180002754902 99.62 True fake: scaffold gap size wrong estimation (local) 3579569 3623771 256993 301144 CM091764.1 scf7180002754902 99.34 True local misassembly 3624006 3626692 301213 303896 CM091764.1 scf7180002754902 98.89 True relocation, scaffold gap is present, inconsistency = -32787 3627052 3650581 337043 360604 CM091764.1 scf7180002754902 99.73 True fake: scaffold gap size wrong estimation (local) 3654376 3657136 362072 364847 CM091764.1 scf7180002754902 98.78 True CONTIG scf7180002754902 373918 misassembled 1476315 1585989 1 109729 CM091756.1 scf7180002754903 99.69 True fake: scaffold gap size wrong estimation (local) 1586329 1620342 109834 143841 CM091756.1 scf7180002754903 99.67 True local misassembly 1620876 1631050 144393 154569 CM091756.1 scf7180002754903 99.88 True relocation, scaffold gap is present, inconsistency = -44711 1631064 1659081 199294 226722 CM091756.1 scf7180002754903 97.16 True fake: scaffold gap size wrong estimation (extensive) 1659111 1674244 234165 249206 CM091756.1 scf7180002754903 99.0 True fake: scaffold gap size wrong estimation (local) 1674464 1684838 249395 259802 CM091756.1 scf7180002754903 99.49 True indel: indel (> 5bp) 1684879 1687638 259894 262653 CM091756.1 scf7180002754903 99.89 True local misassembly 1688598 1691283 262654 265339 CM091756.1 scf7180002754903 99.11 True fake: scaffold gap size wrong estimation (local) 1692844 1693881 266914 267951 CM091756.1 scf7180002754903 99.9 True indel: indel (<= 5bp) 1693882 1694475 267954 268547 CM091756.1 scf7180002754903 99.83 True indel: indel (<= 5bp) 1694476 1696151 268549 270224 CM091756.1 scf7180002754903 100.0 True indel: indel (> 5bp) 1696152 1696875 270248 270971 CM091756.1 scf7180002754903 99.72 True indel: indel (<= 5bp) 1696876 1698560 270973 272657 CM091756.1 scf7180002754903 99.7 True indel: indel (<= 5bp) 1698562 1699326 272658 273422 CM091756.1 scf7180002754903 99.87 True indel: indel (<= 5bp) 1699328 1700193 273423 274288 CM091756.1 scf7180002754903 99.88 True fake: scaffold gap size wrong estimation (local) 1700905 1725798 274999 299008 CM091756.1 scf7180002754903 95.68 True fake: scaffold gap size wrong estimation (local) 1726057 1741673 299328 314946 CM091756.1 scf7180002754903 98.55 True fake: scaffold gap size wrong estimation (local) 1741880 1745677 315170 318985 CM091756.1 scf7180002754903 99.5 True fake: scaffold gap size wrong estimation (local) 1745677 1866184 319375 439431 CM091756.1 scf7180002754903 98.91 True fake: scaffold gap size wrong estimation (local) 1866450 1871396 441808 446756 CM091756.1 scf7180002754903 99.72 True fake: scaffold gap size wrong estimation (local) 1871440 1902267 451702 482578 CM091756.1 scf7180002754903 99.08 True fake: scaffold gap size wrong estimation (local) 1902386 1904776 482702 485100 CM091756.1 scf7180002754903 99.58 True fake: scaffold gap size wrong estimation (local) 1904900 1915569 485246 495921 CM091756.1 scf7180002754903 99.47 True CONTIG scf7180002754903 498734 misassembled 1212680 1253084 1 40154 CM091753.1 scf7180002754904 99.33 True translocation, scaffold gap is present 12730014 12751585 45562 67078 CM091759.1 scf7180002754904 98.87 True relocation, scaffold gap is present, inconsistency = -21673 12751879 12753758 89045 90924 CM091759.1 scf7180002754904 99.84 True indel: indel (<= 5bp) 12754117 12754762 91287 91932 CM091759.1 scf7180002754904 100.0 True indel: indel (<= 5bp) 12754763 12755310 91934 92481 CM091759.1 scf7180002754904 99.45 True indel: indel (<= 5bp) 12755311 12757606 92483 94778 CM091759.1 scf7180002754904 99.87 True indel: indel (<= 5bp) 12757608 12759409 94779 96580 CM091759.1 scf7180002754904 99.83 True indel: indel (> 5bp) 12759417 12760078 96581 97242 CM091759.1 scf7180002754904 99.85 True indel: indel (<= 5bp) 12760079 12761949 97244 99114 CM091759.1 scf7180002754904 99.57 True indel: indel (<= 5bp) 12762084 12764122 99252 101290 CM091759.1 scf7180002754904 99.66 True relocation, scaffold gap is present, inconsistency = -13415 12764275 12766524 114858 117107 CM091759.1 scf7180002754904 99.51 True indel: indel (<= 5bp) 12766525 12768442 117112 119029 CM091759.1 scf7180002754904 99.74 True indel: indel (<= 5bp) 12768444 12771579 119030 122165 CM091759.1 scf7180002754904 99.68 True indel: indel (<= 5bp) 12771581 12773005 122166 123590 CM091759.1 scf7180002754904 99.79 True indel: indel (<= 5bp) 12773006 12774299 123593 124886 CM091759.1 scf7180002754904 99.69 True indel: indel (<= 5bp) 12774355 12777443 124944 128032 CM091759.1 scf7180002754904 99.61 True indel: indel (> 5bp) 12777888 12785885 128485 136482 CM091759.1 scf7180002754904 99.76 True indel: indel (<= 5bp) 12785890 12788997 136483 139590 CM091759.1 scf7180002754904 99.97 True local misassembly 12792774 12797298 140058 144583 CM091759.1 scf7180002754904 99.45 True relocation, scaffold gap is present, inconsistency = -28255 12797291 12816077 172831 191635 CM091759.1 scf7180002754904 99.39 True relocation, scaffold gap is present, inconsistency = -17505 12816142 12828412 209205 221559 CM091759.1 scf7180002754904 99.38 True fake: scaffold gap size wrong estimation (local) 12828697 12830541 223740 225585 CM091759.1 scf7180002754904 99.46 True fake: scaffold gap size wrong estimation (local) 12830566 12868545 227178 265175 CM091759.1 scf7180002754904 99.45 True fake: scaffold gap size wrong estimation (local) 12869311 12931632 265281 327653 CM091759.1 scf7180002754904 99.25 True fake: scaffold gap size wrong estimation (local) 12931651 12971787 333927 374073 CM091759.1 scf7180002754904 99.0 True fake: scaffold gap size wrong estimation (local) 12972394 12976452 379088 383151 CM091759.1 scf7180002754904 99.29 True fake: scaffold gap size wrong estimation (local) 12976433 13011457 387164 422803 CM091759.1 scf7180002754904 97.95 True local misassembly 13012335 13069836 423704 481017 CM091759.1 scf7180002754904 98.82 True fake: scaffold gap size wrong estimation (local) 13070032 13078633 483437 492078 CM091759.1 scf7180002754904 98.79 True fake: scaffold gap size wrong estimation (extensive) 13078653 13103828 500661 525825 CM091759.1 scf7180002754904 99.12 True CONTIG scf7180002754904 525837 misassembled 15329181 15360009 51 30849 CM091755.1 scf7180002754905 99.22 True fake: scaffold gap size wrong estimation (extensive) 15360363 15378275 40671 58686 CM091755.1 scf7180002754905 98.53 True relocation, scaffold gap is present, inconsistency = -10022 15379048 15393873 69481 84304 CM091755.1 scf7180002754905 99.37 True fake: scaffold gap size wrong estimation (local) 15394158 15440422 85962 131125 CM091755.1 scf7180002754905 96.87 True relocation, scaffold gap is present, inconsistency = -45258 15441168 15464143 177129 200124 CM091755.1 scf7180002754905 99.4 True fake: scaffold gap size wrong estimation (local) 15464248 15465063 200229 201044 CM091755.1 scf7180002754905 99.02 True local misassembly 15465994 15467361 201976 203343 CM091755.1 scf7180002754905 99.78 True indel: indel (<= 5bp) 15467362 15467867 203346 203851 CM091755.1 scf7180002754905 99.41 True fake: scaffold gap size wrong estimation (local) 15468714 15500310 204137 235528 CM091755.1 scf7180002754905 98.49 True relocation, scaffold gap is present, inconsistency = -21154 15500365 15509433 256737 265815 CM091755.1 scf7180002754905 99.33 True fake: scaffold gap size wrong estimation (local) 15509602 15566577 266037 323024 CM091755.1 scf7180002754905 99.24 True fake: scaffold gap size wrong estimation (local) 15567203 15575468 325551 333819 CM091755.1 scf7180002754905 99.92 True CONTIG scf7180002754905 347347 misassembled 1123262 1132595 1 9314 CM091757.1 scf7180002754906 99.22 True fake: scaffold gap size wrong estimation (local) 1132993 1144022 9716 20553 CM091757.1 scf7180002754906 97.4 True fake: scaffold gap size wrong estimation (local) 1144286 1225162 21745 102686 CM091757.1 scf7180002754906 99.5 True fake: scaffold gap size wrong estimation (local) 1225314 1247168 102798 128521 CM091757.1 scf7180002754906 98.23 True fake: scaffold gap size wrong estimation (local) 1247522 1308817 133957 195039 CM091757.1 scf7180002754906 99.03 True fake: scaffold gap size wrong estimation (local) 1308771 1315473 197694 204432 CM091757.1 scf7180002754906 98.91 True translocation, scaffold gap is present 14354714 14373271 204453 223026 CM091758.1 scf7180002754906 98.64 True CONTIG scf7180002754906 223026 misassembled 3121233 3214268 29 92934 CM091767.1 scf7180002754907 99.02 True indel: indel (> 5bp) 3214318 3233040 92993 111705 CM091767.1 scf7180002754907 99.76 True local misassembly 3236940 3248852 111706 123614 CM091767.1 scf7180002754907 99.5 True relocation, scaffold gap is present, inconsistency = -102416 3239085 3239610 216263 216788 CM091767.1 scf7180002754907 100.0 True fake: scaffold gap size wrong estimation (local) 3249201 3259281 226377 236267 CM091767.1 scf7180002754907 97.28 True indel: indel (> 5bp) 3259310 3278608 236303 255625 CM091767.1 scf7180002754907 99.34 True relocation, scaffold gap is present, inconsistency = -23595 3278953 3279967 279565 280579 CM091767.1 scf7180002754907 99.8 True indel: indel (<= 5bp) 3279971 3280999 280580 281608 CM091767.1 scf7180002754907 100.0 True indel: indel (<= 5bp) 3281001 3281649 281609 282257 CM091767.1 scf7180002754907 99.69 True fake: scaffold gap size wrong estimation (local) 3282108 3282843 282734 283469 CM091767.1 scf7180002754907 100.0 True indel: indel (<= 5bp) 3282844 3283846 283475 284477 CM091767.1 scf7180002754907 99.9 True local misassembly 3284538 3285358 284592 285412 CM091767.1 scf7180002754907 99.63 True indel: indel (<= 5bp) 3285359 3285865 285415 285921 CM091767.1 scf7180002754907 99.41 True indel: indel (<= 5bp) 3285867 3286629 285922 286684 CM091767.1 scf7180002754907 98.95 True indel: indel (<= 5bp) 3286631 3288013 286685 288067 CM091767.1 scf7180002754907 99.35 True local misassembly 3289175 3289723 289091 289639 CM091767.1 scf7180002754907 99.45 True indel: stretch of mismatches 3289755 3290993 289671 290909 CM091767.1 scf7180002754907 99.6 True indel: indel (<= 5bp) 3290994 3292721 290911 292638 CM091767.1 scf7180002754907 99.02 True local misassembly 3293917 3294918 292639 293640 CM091767.1 scf7180002754907 99.3 True indel: indel (> 5bp) 3294926 3295684 293641 294399 CM091767.1 scf7180002754907 99.87 True local misassembly 3296742 3297534 295467 296259 CM091767.1 scf7180002754907 99.75 True indel: indel (<= 5bp) 3297535 3298221 296261 296947 CM091767.1 scf7180002754907 99.85 True local misassembly 3299109 3300219 297319 298429 CM091767.1 scf7180002754907 99.28 True indel: indel (> 5bp) 3300388 3301157 298590 299359 CM091767.1 scf7180002754907 99.35 True local misassembly 3303247 3303876 301381 302010 CM091767.1 scf7180002754907 100.0 True indel: indel (<= 5bp) 3303878 3304595 302011 302728 CM091767.1 scf7180002754907 99.86 True indel: indel (<= 5bp) 3304596 3305224 302730 303358 CM091767.1 scf7180002754907 99.84 True indel: indel (<= 5bp) 3305225 3306397 303360 304532 CM091767.1 scf7180002754907 99.74 True indel: indel (<= 5bp) 3306398 3307179 304535 305316 CM091767.1 scf7180002754907 99.36 True indel: indel (<= 5bp) 3307182 3307940 305317 306075 CM091767.1 scf7180002754907 99.6 True relocation, scaffold gap is present, inconsistency = -13165 3307941 3308490 319241 319790 CM091767.1 scf7180002754907 100.0 True fake: scaffold gap size wrong estimation (local) 3309504 3312169 320829 323494 CM091767.1 scf7180002754907 99.89 True local misassembly 3313288 3314341 323495 324548 CM091767.1 scf7180002754907 99.91 True fake: scaffold gap size wrong estimation (local) 3314704 3315462 324914 325672 CM091767.1 scf7180002754907 100.0 True fake: scaffold gap size wrong estimation (local) 3315463 3316024 325695 326256 CM091767.1 scf7180002754907 99.82 True indel: indel (<= 5bp) 3316025 3317265 326258 327498 CM091767.1 scf7180002754907 99.52 True indel: indel (<= 5bp) 3317408 3318244 327645 328481 CM091767.1 scf7180002754907 99.64 True local misassembly 3318997 3319508 329236 329747 CM091767.1 scf7180002754907 100.0 True local misassembly 3319935 3320819 329918 330802 CM091767.1 scf7180002754907 97.18 True local misassembly 3321636 3322493 331517 332374 CM091767.1 scf7180002754907 99.18 True fake: scaffold gap size wrong estimation (local) 3322494 3323919 332413 333838 CM091767.1 scf7180002754907 99.23 True local misassembly 3323920 3325800 334000 335880 CM091767.1 scf7180002754907 99.52 True fake: scaffold gap size wrong estimation (local) 3326472 3327063 336558 337149 CM091767.1 scf7180002754907 99.66 True indel: indel (> 5bp) 3327073 3328310 337150 338387 CM091767.1 scf7180002754907 99.68 True indel: indel (<= 5bp) 3328311 3329449 338389 339527 CM091767.1 scf7180002754907 99.91 True indel: stretch of mismatches 3329804 3330667 339882 340745 CM091767.1 scf7180002754907 99.54 True indel: indel (<= 5bp) 3330668 3331207 340747 341286 CM091767.1 scf7180002754907 99.81 True indel: indel (<= 5bp) 3331516 3334604 341591 344679 CM091767.1 scf7180002754907 98.67 True indel: indel (> 5bp) 3334931 3335460 345014 345543 CM091767.1 scf7180002754907 99.81 True fake: scaffold gap size wrong estimation (local) 3336107 3336818 346202 346913 CM091767.1 scf7180002754907 100.0 True indel: indel (> 5bp) 3337214 3348720 347250 358749 CM091767.1 scf7180002754907 99.23 True local misassembly 3350351 3385110 358973 393704 CM091767.1 scf7180002754907 99.28 True relocation, scaffold gap is present, inconsistency = -15549 3385096 3415951 409239 439723 CM091767.1 scf7180002754907 98.46 True indel: indel (<= 5bp) 3416120 3507682 439893 531520 CM091767.1 scf7180002754907 99.68 True relocation, scaffold gap is present, inconsistency = -115568 3507659 3515092 647065 654511 CM091767.1 scf7180002754907 99.81 True fake: scaffold gap size wrong estimation (local) 3515344 3540767 656653 682074 CM091767.1 scf7180002754907 99.68 True relocation, scaffold gap is present, inconsistency = -25232 3540722 3546353 707261 712917 CM091767.1 scf7180002754907 99.13 True indel: indel (> 5bp) 3546390 3604668 713000 771295 CM091767.1 scf7180002754907 99.44 True relocation, scaffold gap is present, inconsistency = -41995 3604864 3643583 813486 852369 CM091767.1 scf7180002754907 99.01 True fake: scaffold gap size wrong estimation (local) 3643582 3696388 855623 908425 CM091767.1 scf7180002754907 99.45 True indel: indel (> 5bp) 3696595 3709135 908644 921185 CM091767.1 scf7180002754907 99.79 True fake: scaffold gap size wrong estimation (extensive) 3709334 3715183 930938 936791 CM091767.1 scf7180002754907 99.81 True fake: scaffold gap size wrong estimation (local) 3715220 3824468 942482 1051656 CM091767.1 scf7180002754907 99.79 True relocation, scaffold gap is present, inconsistency = -99726 3728198 3728944 1055112 1055858 CM091767.1 scf7180002754907 100.0 True fake: scaffold gap size wrong estimation (local) 3733913 3734505 1060826 1061427 CM091767.1 scf7180002754907 100.0 True fake: scaffold gap size wrong estimation (local) 3781988 3782742 1109037 1109792 CM091767.1 scf7180002754907 100.0 True fake: scaffold gap size wrong estimation (local) 3804618 3805131 1131706 1132217 CM091767.1 scf7180002754907 99.53 True fake: scaffold gap size wrong estimation (local) 3824745 3858352 1151118 1184726 CM091767.1 scf7180002754907 99.64 True relocation, scaffold gap is present, inconsistency = -33567 3825280 3825855 1185221 1185798 CM091767.1 scf7180002754907 100.0 True fake: scaffold gap size wrong estimation (local) 3858347 3873297 1218310 1233273 CM091767.1 scf7180002754907 99.37 True fake: scaffold gap size wrong estimation (local) 3873520 3880752 1237700 1244908 CM091767.1 scf7180002754907 99.01 True translocation 5838832 5846340 1252418 1244909 CM091757.1 scf7180002754907 99.75 True fake: scaffold gap size wrong estimation (local) 5770020 5838831 1325003 1256141 CM091757.1 scf7180002754907 99.43 True fake: scaffold gap size wrong estimation (local) 5762225 5769845 1336941 1329321 CM091757.1 scf7180002754907 99.75 True indel: indel (> 5bp) 5752209 5762196 1347032 1337025 CM091757.1 scf7180002754907 99.2 True indel: indel (> 5bp) 5716913 5751999 1382374 1347278 CM091757.1 scf7180002754907 99.56 True indel: indel (<= 5bp) 5700541 5716813 1398731 1382473 CM091757.1 scf7180002754907 99.59 True relocation, scaffold gap is present, inconsistency = -69433 5521422 5700518 1647395 1468187 CM091757.1 scf7180002754907 99.6 True fake: scaffold gap size wrong estimation (local) 5507785 5521270 1666672 1653189 CM091757.1 scf7180002754907 99.68 True relocation, scaffold gap is present, inconsistency = -13041 5449988 5507766 1737569 1679732 CM091757.1 scf7180002754907 99.49 True CONTIG scf7180002754907 1738047 misassembled 4344394 4363335 1 18259 CM091766.1 scf7180002754908 95.61 True fake: scaffold gap size wrong estimation (extensive) 4363337 4371217 25647 33552 CM091766.1 scf7180002754908 99.63 True fake: scaffold gap size wrong estimation (local) 4372393 4473491 34428 135244 CM091766.1 scf7180002754908 99.08 True fake: scaffold gap size wrong estimation (local) 4474074 4476738 139179 141859 CM091766.1 scf7180002754908 99.4 True indel: indel (<= 5bp) 4476767 4503347 141890 168070 CM091766.1 scf7180002754908 97.51 True indel: stretch of mismatches 4503630 4520886 168353 185618 CM091766.1 scf7180002754908 99.13 True relocation, scaffold gap is present, inconsistency = -22069 4520930 4547807 207731 234534 CM091766.1 scf7180002754908 98.64 True fake: scaffold gap size wrong estimation (local) 4547817 4605037 236708 293886 CM091766.1 scf7180002754908 99.22 True fake: scaffold gap size wrong estimation (extensive) 4605029 4611203 302666 308844 CM091766.1 scf7180002754908 99.42 True fake: scaffold gap size wrong estimation (local) 4611219 4657004 315017 360653 CM091766.1 scf7180002754908 98.98 True fake: scaffold gap size wrong estimation (local) 4669459 4670345 378034 378922 CM091766.1 scf7180002754908 97.23 True indel: indel (> 5bp) 4670396 4689218 378985 397829 CM091766.1 scf7180002754908 98.99 True CONTIG scf7180002754908 397829 misassembled 11004913 11019632 1 14438 CM091753.1 scf7180002754909 97.62 True fake: scaffold gap size wrong estimation (local) 11019673 11029170 17512 27021 CM091753.1 scf7180002754909 98.5 True fake: scaffold gap size wrong estimation (local) 11029198 11042622 27085 40510 CM091753.1 scf7180002754909 99.4 True relocation, scaffold gap is present, inconsistency = -11880 11042631 11061377 52399 71204 CM091753.1 scf7180002754909 99.38 True fake: scaffold gap size wrong estimation (local) 11062400 11066116 71225 74926 CM091753.1 scf7180002754909 98.79 True local misassembly 11061369 11062270 76729 77630 CM091753.1 scf7180002754909 100.0 True fake: scaffold gap size wrong estimation (local) 11066113 11083227 78999 96035 CM091753.1 scf7180002754909 99.13 True fake: scaffold gap size wrong estimation (extensive) 11083251 11137033 103700 157089 CM091753.1 scf7180002754909 98.59 True indel: indel (<= 5bp) 11137171 11149760 157229 169804 CM091753.1 scf7180002754909 99.67 True relocation, scaffold gap is present, inconsistency = -49823 11149762 11447689 219629 517423 CM091753.1 scf7180002754909 99.65 True relocation, scaffold gap is present, inconsistency = -297807 11234360 11234910 601901 602451 CM091753.1 scf7180002754909 100.0 True fake: scaffold gap size wrong estimation (local) 11347977 11348489 715868 716380 CM091753.1 scf7180002754909 100.0 True fake: scaffold gap size wrong estimation (local) 11390500 11391208 758430 759140 CM091753.1 scf7180002754909 99.31 True fake: scaffold gap size wrong estimation (local) 11406202 11406759 774269 774843 CM091753.1 scf7180002754909 100.0 True fake: scaffold gap size wrong estimation (local) 11447711 11559829 815909 927200 CM091753.1 scf7180002754909 99.07 True fake: scaffold gap size wrong estimation (local) 11560127 11594551 930298 964748 CM091753.1 scf7180002754909 99.77 True fake: scaffold gap size wrong estimation (local) 11595325 11623712 967297 995667 CM091753.1 scf7180002754909 99.81 True CONTIG scf7180002754909 1017298 misassembled 15712813 15747531 1 34692 CM091753.1 scf7180002754910 99.32 True local misassembly 15747613 15811488 34882 98695 CM091753.1 scf7180002754910 99.42 True fake: scaffold gap size wrong estimation (local) 15811509 15879537 101790 169913 CM091753.1 scf7180002754910 99.4 True relocation, scaffold gap is present, inconsistency = -52978 15879723 15912409 223077 255747 CM091753.1 scf7180002754910 99.25 True relocation, scaffold gap is present, inconsistency = -32441 15912343 15931583 288122 307366 CM091753.1 scf7180002754910 99.46 True fake: scaffold gap size wrong estimation (local) 15931556 16037676 308195 414405 CM091753.1 scf7180002754910 99.4 True indel: indel (> 5bp) 16037906 16128070 414655 505078 CM091753.1 scf7180002754910 99.1 True fake: scaffold gap size wrong estimation (local) 16128377 16131487 507825 510936 CM091753.1 scf7180002754910 99.78 True CONTIG scf7180002754910 510936 misassembled 12543745 12594930 1 51361 CM091753.1 scf7180002754911 99.15 True fake: scaffold gap size wrong estimation (local) 12595110 12629797 51542 86254 CM091753.1 scf7180002754911 99.36 True relocation, scaffold gap is present, inconsistency = -25699 12629919 12641935 112075 124092 CM091753.1 scf7180002754911 99.38 True fake: scaffold gap size wrong estimation (local) 12641990 12642552 124255 124817 CM091753.1 scf7180002754911 99.64 True fake: scaffold gap size wrong estimation (local) 12642558 12676521 125445 159394 CM091753.1 scf7180002754911 99.54 True relocation, scaffold gap is present, inconsistency = -30687 12676715 12775440 190275 288719 CM091753.1 scf7180002754911 98.51 True CONTIG scf7180002754911 304108 misassembled 9714822 9769293 1 54483 CM091758.1 scf7180002754912 99.29 True indel: indel (<= 5bp) 9769459 9803970 54648 89172 CM091758.1 scf7180002754912 99.34 True relocation, scaffold gap is present, inconsistency = -70408 9804407 9805968 160017 161578 CM091758.1 scf7180002754912 99.94 True indel: indel (> 5bp) 9806120 9824773 161665 180313 CM091758.1 scf7180002754912 99.35 True relocation, scaffold gap is present, inconsistency = -19774 9824664 9866867 199978 241580 CM091758.1 scf7180002754912 97.68 True indel: indel (> 5bp) 9866962 9876047 241685 250763 CM091758.1 scf7180002754912 99.06 True relocation, scaffold gap is present, inconsistency = -44491 9850044 9850607 269251 269821 CM091758.1 scf7180002754912 100.0 True fake: scaffold gap size wrong estimation (local) 9876103 9883631 295753 303343 CM091758.1 scf7180002754912 97.33 True fake: scaffold gap size wrong estimation (local) 9883931 9888978 303522 308562 CM091758.1 scf7180002754912 99.21 True fake: scaffold gap size wrong estimation (local) 9889055 9950228 313703 374670 CM091758.1 scf7180002754912 98.81 True relocation, scaffold gap is present, inconsistency = -18283 9950413 9956508 393138 399393 CM091758.1 scf7180002754912 97.16 True fake: scaffold gap size wrong estimation (local) 9957227 9980983 399414 423202 CM091758.1 scf7180002754912 99.59 True relocation, scaffold gap is present, inconsistency = -22939 9980983 10026782 446141 491979 CM091758.1 scf7180002754912 99.6 True relocation, scaffold gap is present, inconsistency = -25687 10026807 10081988 517691 572697 CM091758.1 scf7180002754912 99.18 True fake: scaffold gap size wrong estimation (extensive) 10084823 10314478 583314 813548 CM091758.1 scf7180002754912 99.53 True fake: scaffold gap size wrong estimation (local) 10314500 10315297 816237 817034 CM091758.1 scf7180002754912 98.87 True local misassembly 10315834 10316712 817578 818456 CM091758.1 scf7180002754912 99.77 True indel: indel (<= 5bp) 10317190 10317759 818930 819499 CM091758.1 scf7180002754912 99.3 True indel: indel (> 5bp) 10317779 10318781 819512 820514 CM091758.1 scf7180002754912 98.6 True fake: scaffold gap size wrong estimation (local) 10319235 10319943 820955 821663 CM091758.1 scf7180002754912 98.73 True indel: indel (> 5bp) 10319982 10320641 821664 822323 CM091758.1 scf7180002754912 96.21 True indel: indel (> 5bp) 10320648 10322299 822338 823989 CM091758.1 scf7180002754912 99.52 True indel: indel (<= 5bp) 10322368 10323575 824060 825267 CM091758.1 scf7180002754912 99.75 True indel: indel (<= 5bp) 10323599 10324599 825293 826293 CM091758.1 scf7180002754912 99.5 True indel: indel (<= 5bp) 10324601 10326700 826294 828393 CM091758.1 scf7180002754912 99.0 True local misassembly 10328322 10329104 829207 829989 CM091758.1 scf7180002754912 99.36 True indel: stretch of mismatches 10329351 10331159 830236 832044 CM091758.1 scf7180002754912 99.83 True indel: indel (<= 5bp) 10331161 10331954 832045 832838 CM091758.1 scf7180002754912 98.74 True fake: scaffold gap size wrong estimation (extensive) 10332950 10406654 842791 913676 CM091758.1 scf7180002754912 95.22 True local misassembly 10408463 10410240 913677 915452 CM091758.1 scf7180002754912 99.21 True relocation, scaffold gap is present, inconsistency = -11263 10410251 10421666 926726 938146 CM091758.1 scf7180002754912 99.1 True fake: scaffold gap size wrong estimation (local) 10421707 10440200 938254 956644 CM091758.1 scf7180002754912 98.03 True fake: scaffold gap size wrong estimation (extensive) 10440223 10469762 965592 995208 CM091758.1 scf7180002754912 99.25 True fake: scaffold gap size wrong estimation (local) 10469744 10470254 999792 1000302 CM091758.1 scf7180002754912 99.02 True fake: scaffold gap size wrong estimation (local) 10470394 10518076 1000442 1048166 CM091758.1 scf7180002754912 99.45 True fake: scaffold gap size wrong estimation (local) 10518541 10540248 1053027 1074731 CM091758.1 scf7180002754912 99.18 True translocation 13084458 13130961 1074775 1120812 CM091751.1 scf7180002754912 97.86 True relocation, scaffold gap is present, inconsistency = -29211 13130993 13151973 1150055 1171124 CM091751.1 scf7180002754912 98.75 True translocation 14562902 14581851 1190084 1171125 CM091756.1 scf7180002754912 99.79 True CONTIG scf7180002754912 1190084 misassembled 10035479 10086688 1 50850 CM091755.1 scf7180002754913 98.89 True fake: scaffold gap size wrong estimation (extensive) 10088366 10091425 59600 62665 CM091755.1 scf7180002754913 99.15 True fake: scaffold gap size wrong estimation (local) 10091429 10096092 64435 69101 CM091755.1 scf7180002754913 99.23 True relocation, scaffold gap is present, inconsistency = -10027 10087131 10088132 70167 71168 CM091755.1 scf7180002754913 99.1 True fake: scaffold gap size wrong estimation (local) 10096656 10105615 74488 83421 CM091755.1 scf7180002754913 98.38 True local misassembly 10106485 10107083 84074 84672 CM091755.1 scf7180002754913 99.67 True fake: scaffold gap size wrong estimation (local) 10107599 10108121 85361 85883 CM091755.1 scf7180002754913 99.04 True fake: scaffold gap size wrong estimation (local) 10109459 10110732 86579 87852 CM091755.1 scf7180002754913 99.37 True local misassembly 10112477 10113382 89602 90507 CM091755.1 scf7180002754913 99.12 True local misassembly 10113582 10114815 90530 91763 CM091755.1 scf7180002754913 99.51 True fake: scaffold gap size wrong estimation (local) 10114886 10118078 97795 100981 CM091755.1 scf7180002754913 97.68 True fake: scaffold gap size wrong estimation (local) 10118984 10150608 101002 132631 CM091755.1 scf7180002754913 99.71 True relocation, scaffold gap is present, inconsistency = -31452 10150613 10156940 164088 170412 CM091755.1 scf7180002754913 99.32 True fake: scaffold gap size wrong estimation (local) 10157044 10175304 170507 188792 CM091755.1 scf7180002754913 99.44 True fake: scaffold gap size wrong estimation (local) 10175474 10211550 189132 224638 CM091755.1 scf7180002754913 97.67 True relocation, scaffold gap is present, inconsistency = -34063 10212030 10230928 259181 277752 CM091755.1 scf7180002754913 97.3 True fake: scaffold gap size wrong estimation (local) 10231164 10249172 284207 302177 CM091755.1 scf7180002754913 99.39 True relocation, scaffold gap is present, inconsistency = -18069 10249171 10331640 320245 401965 CM091755.1 scf7180002754913 98.24 True indel: indel (> 5bp) 10331678 10333177 401993 403488 CM091755.1 scf7180002754913 99.27 True relocation, scaffold gap is present, inconsistency = -71948 10333562 10370690 475821 512812 CM091755.1 scf7180002754913 99.41 True relocation, scaffold gap is present, inconsistency = -22102 10371126 10374131 535350 538356 CM091755.1 scf7180002754913 99.94 True translocation 10076254 10140643 538357 602714 CM091751.1 scf7180002754913 99.62 True CONTIG scf7180002754913 660489 misassembled 13573041 13597318 1 24068 CM091758.1 scf7180002754914 99.08 True fake: scaffold gap size wrong estimation (local) 13597582 13599301 26868 28587 CM091758.1 scf7180002754914 98.78 True indel: indel (<= 5bp) 13599304 13600070 28588 29354 CM091758.1 scf7180002754914 100.0 True indel: indel (<= 5bp) 13600072 13603569 29355 32852 CM091758.1 scf7180002754914 99.91 True fake: scaffold gap size wrong estimation (local) 13603607 13627105 37193 60685 CM091758.1 scf7180002754914 99.89 True fake: scaffold gap size wrong estimation (local) 13627119 13646237 62838 81774 CM091758.1 scf7180002754914 98.59 True fake: scaffold gap size wrong estimation (local) 13646272 13686802 85467 125978 CM091758.1 scf7180002754914 99.9 True relocation, scaffold gap is present, inconsistency = -29624 13687100 13696515 155900 165317 CM091758.1 scf7180002754914 99.65 True fake: scaffold gap size wrong estimation (local) 13696716 13708213 165433 176931 CM091758.1 scf7180002754914 99.96 True relocation, scaffold gap is present, inconsistency = -11070 13708336 13718468 188124 198241 CM091758.1 scf7180002754914 99.67 True fake: scaffold gap size wrong estimation (local) 13718720 13759011 198398 238645 CM091758.1 scf7180002754914 99.72 True translocation, scaffold gap is present 2567750 2622341 238864 293451 CM091762.1 scf7180002754914 99.95 True translocation, scaffold gap is present 13759195 13760983 293472 295260 CM091758.1 scf7180002754914 99.78 True translocation, scaffold gap is present 2622429 2644064 349000 370609 CM091762.1 scf7180002754914 99.73 True relocation, scaffold gap is present, inconsistency = -21177 2644049 2717340 391771 464759 CM091762.1 scf7180002754914 99.5 True relocation, scaffold gap is present, inconsistency = -52195 2685335 2685947 484949 485595 CM091762.1 scf7180002754914 97.57 True fake: scaffold gap size wrong estimation (local) 2717485 2730063 516884 529461 CM091762.1 scf7180002754914 99.93 True relocation, scaffold gap is present, inconsistency = -10774 2729990 2762981 540162 573154 CM091762.1 scf7180002754914 99.98 True relocation, scaffold gap is present, inconsistency = -22912 2762946 2766585 596031 599670 CM091762.1 scf7180002754914 99.94 True CONTIG scf7180002754914 599670 misassembled 11651619 11717682 130 66161 CM091761.1 scf7180002754915 99.9 True relocation, scaffold gap is present, inconsistency = -60642 11693477 11693980 102598 103102 CM091761.1 scf7180002754915 100.0 True fake: scaffold gap size wrong estimation (local) 11718040 11755939 126749 164649 CM091761.1 scf7180002754915 99.77 True relocation, scaffold gap is present, inconsistency = -35901 11756219 11763137 200830 207746 CM091761.1 scf7180002754915 99.88 True fake: scaffold gap size wrong estimation (local) 11763298 11882506 207905 327090 CM091761.1 scf7180002754915 99.5 True relocation, scaffold gap is present, inconsistency = -102067 11802652 11803377 349303 350050 CM091761.1 scf7180002754915 99.5 True relocation, scaffold gap is present, inconsistency = -6459251 5370374 5383565 376298 389474 CM091761.1 scf7180002754915 99.81 True relocation, scaffold gap is present, inconsistency = -12316 5383913 5399739 402138 417985 CM091761.1 scf7180002754915 99.72 True relocation, scaffold gap is present, inconsistency = -15767 5392964 5393515 426977 427528 CM091761.1 scf7180002754915 100.0 True fake: scaffold gap size wrong estimation (local) 5399741 5424858 433783 458274 CM091761.1 scf7180002754915 97.13 True relocation, scaffold gap is present, inconsistency = -14806 5424929 5438083 473151 486321 CM091761.1 scf7180002754915 99.48 True relocation, scaffold gap is present, inconsistency = 6443918 11882729 12008066 487049 612340 CM091761.1 scf7180002754915 99.72 True relocation, scaffold gap is present, inconsistency = -6578419 5438156 5441623 620849 624326 CM091761.1 scf7180002754915 99.17 True fake: scaffold gap size wrong estimation (local) 5442047 5477084 627107 662176 CM091761.1 scf7180002754915 99.57 True fake: scaffold gap size wrong estimation (extensive) 5477072 5479645 670597 673214 CM091761.1 scf7180002754915 98.96 True fake: scaffold gap size wrong estimation (local) 5479784 5481982 673318 675521 CM091761.1 scf7180002754915 99.77 True fake: scaffold gap size wrong estimation (local) 5482776 5503936 676699 697895 CM091761.1 scf7180002754915 99.64 True indel: indel (> 5bp) 5503979 5552326 697927 746261 CM091761.1 scf7180002754915 99.75 True relocation, scaffold gap is present, inconsistency = 6410675 12008113 12020944 791373 804293 CM091761.1 scf7180002754915 98.82 True relocation, scaffold gap is present, inconsistency = -6468925 5552325 5584371 804599 836636 CM091761.1 scf7180002754915 98.72 True relocation, scaffold gap is present, inconsistency = 6430294 12020967 12037070 842938 860394 CM091761.1 scf7180002754915 98.24 True fake: scaffold gap size wrong estimation (local) 12037260 12037863 860904 861508 CM091761.1 scf7180002754915 99.5 True fake: scaffold gap size wrong estimation (local) 12037968 12055763 861606 879398 CM091761.1 scf7180002754915 99.62 True relocation, scaffold gap is present, inconsistency = -6472657 5584427 5587962 880719 884261 CM091761.1 scf7180002754915 99.29 True fake: scaffold gap size wrong estimation (local) 5587963 5613734 887167 912955 CM091761.1 scf7180002754915 99.25 True relocation, scaffold gap is present, inconsistency = 6438114 12055781 12063297 916888 924390 CM091761.1 scf7180002754915 99.49 True fake: scaffold gap size wrong estimation (local) 12063302 12071009 931063 938757 CM091761.1 scf7180002754915 99.37 True relocation, scaffold gap is present, inconsistency = -6460425 5613768 5642170 941941 970343 CM091761.1 scf7180002754915 99.7 True relocation, scaffold gap is present, inconsistency = 6428395 12071031 12081176 970809 980952 CM091761.1 scf7180002754915 99.6 True relocation, scaffold gap is present, inconsistency = -6466407 5642629 5715126 1008812 1081414 CM091761.1 scf7180002754915 99.6 True fake: scaffold gap size wrong estimation (local) 5715717 5721118 1082513 1087913 CM091761.1 scf7180002754915 99.69 True CONTIG scf7180002754915 1090188 misassembled 1845605 1876521 70 30847 CM091767.1 scf7180002754916 99.19 True fake: scaffold gap size wrong estimation (local) 1876549 1898584 34073 56088 CM091767.1 scf7180002754916 99.34 True fake: scaffold gap size wrong estimation (local) 1898572 1922267 59250 82870 CM091767.1 scf7180002754916 99.27 True fake: scaffold gap size wrong estimation (local) 1922360 2031278 82953 191914 CM091767.1 scf7180002754916 99.63 True fake: scaffold gap size wrong estimation (local) 2031418 2041293 192035 201900 CM091767.1 scf7180002754916 99.28 True relocation, scaffold gap is present, inconsistency = -768761 1276098 1284589 205466 213964 CM091767.1 scf7180002754916 99.35 True relocation, scaffold gap is present, inconsistency = 756475 2041303 2044532 214203 217426 CM091767.1 scf7180002754916 99.47 True fake: scaffold gap size wrong estimation (local) 2044564 2048777 220711 224798 CM091767.1 scf7180002754916 96.47 True relocation, scaffold gap is present, inconsistency = -764094 1286004 1286534 226119 226649 CM091767.1 scf7180002754916 99.62 True local misassembly 1287571 1288145 227691 228265 CM091767.1 scf7180002754916 99.48 True relocation, scaffold gap is present, inconsistency = 757890 2048726 2050288 230956 232518 CM091767.1 scf7180002754916 99.74 True fake: scaffold gap size wrong estimation (local) 2052840 2053455 234652 235267 CM091767.1 scf7180002754916 99.84 True fake: scaffold gap size wrong estimation (local) 2053906 2056344 242340 244778 CM091767.1 scf7180002754916 99.67 True indel: indel (> 5bp) 2056345 2061996 244797 250448 CM091767.1 scf7180002754916 99.89 True indel: indel (<= 5bp) 2062183 2062741 250637 251195 CM091767.1 scf7180002754916 100.0 True indel: indel (<= 5bp) 2062742 2063322 251197 251777 CM091767.1 scf7180002754916 99.66 True indel: indel (<= 5bp) 2063389 2064362 251845 252818 CM091767.1 scf7180002754916 99.9 True indel: indel (> 5bp) 2064444 2066500 252890 254946 CM091767.1 scf7180002754916 99.76 True relocation, scaffold gap is present, inconsistency = -776084 1295812 1317910 260342 282428 CM091767.1 scf7180002754916 99.39 True relocation, scaffold gap is present, inconsistency = 741737 2066495 2101824 289276 324604 CM091767.1 scf7180002754916 99.84 True relocation, scaffold gap is present, inconsistency = -35298 2102117 2106445 360195 364525 CM091767.1 scf7180002754916 99.84 True fake: scaffold gap size wrong estimation (local) 2107027 2114287 367344 374613 CM091767.1 scf7180002754916 99.42 True indel: indel (<= 5bp) 2114414 2121030 374742 381359 CM091767.1 scf7180002754916 99.67 True fake: scaffold gap size wrong estimation (local) 2121625 2131049 387648 397059 CM091767.1 scf7180002754916 99.6 True fake: scaffold gap size wrong estimation (extensive) 2131073 2178177 406343 453259 CM091767.1 scf7180002754916 98.64 True indel: indel (> 5bp) 2178277 2200664 453385 475756 CM091767.1 scf7180002754916 99.44 True relocation, scaffold gap is present, inconsistency = -67566 2200721 2216374 543379 558745 CM091767.1 scf7180002754916 97.62 True local misassembly 2216776 2218510 558912 560651 CM091767.1 scf7180002754916 99.43 True fake: scaffold gap size wrong estimation (local) 2218744 2228523 561821 571640 CM091767.1 scf7180002754916 99.17 True indel: indel (> 5bp) 2228572 2232240 571674 575331 CM091767.1 scf7180002754916 99.4 True local misassembly 2233052 2233937 575749 576634 CM091767.1 scf7180002754916 99.66 True fake: scaffold gap size wrong estimation (extensive) 2233981 2266514 584424 616943 CM091767.1 scf7180002754916 99.26 True relocation, scaffold gap is present, inconsistency = -32506 2266559 2295110 649494 678239 CM091767.1 scf7180002754916 99.22 True indel: indel (<= 5bp) 2295142 2308456 678272 691614 CM091767.1 scf7180002754916 99.3 True fake: scaffold gap size wrong estimation (local) 2308701 2320737 691729 703805 CM091767.1 scf7180002754916 99.04 True relocation, scaffold gap is present, inconsistency = -11501 2320759 2334335 715328 728901 CM091767.1 scf7180002754916 99.54 True fake: scaffold gap size wrong estimation (local) 2334479 2340145 728980 734481 CM091767.1 scf7180002754916 95.44 True translocation 11669 12374 735323 734617 CM091756.1 scf7180002754916 97.9 True relocation, inconsistency = 12307366 12319741 12410483 735324 824560 CM091756.1 scf7180002754916 98.04 True indel: indel (<= 5bp) 12410574 12497199 824650 911255 CM091756.1 scf7180002754916 99.31 True translocation, scaffold gap is present 9210560 9229826 938345 919080 CM091759.1 scf7180002754916 99.97 True CONTIG scf7180002754916 942772 misassembled 2931534 2934854 1 3328 CM091766.1 scf7180002754917 99.04 True fake: scaffold gap size wrong estimation (local) 2935938 3046308 3349 113252 CM091766.1 scf7180002754917 98.95 True relocation, scaffold gap is present, inconsistency = -110165 3046315 3108387 223424 285496 CM091766.1 scf7180002754917 99.35 True fake: scaffold gap size wrong estimation (local) 3109422 3114608 286339 291540 CM091766.1 scf7180002754917 99.77 True fake: scaffold gap size wrong estimation (local) 3114623 3134424 291578 311065 CM091766.1 scf7180002754917 97.75 True fake: scaffold gap size wrong estimation (local) 3134979 3149631 311647 326114 CM091766.1 scf7180002754917 98.26 True fake: scaffold gap size wrong estimation (local) 3150402 3152095 326568 328255 CM091766.1 scf7180002754917 98.19 True fake: scaffold gap size wrong estimation (local) 3152796 3155418 328276 330940 CM091766.1 scf7180002754917 99.08 True fake: scaffold gap size wrong estimation (local) 3155619 3160663 333033 338119 CM091766.1 scf7180002754917 99.68 True fake: scaffold gap size wrong estimation (local) 3161339 3214443 338164 390295 CM091766.1 scf7180002754917 96.67 True indel: indel (> 5bp) 3214565 3254383 390447 430270 CM091766.1 scf7180002754917 99.48 True fake: scaffold gap size wrong estimation (local) 3254540 3282479 430371 458086 CM091766.1 scf7180002754917 98.49 True fake: scaffold gap size wrong estimation (local) 3282773 3286482 461483 465262 CM091766.1 scf7180002754917 98.84 True fake: scaffold gap size wrong estimation (local) 3287002 3383788 465796 562685 CM091766.1 scf7180002754917 98.72 True fake: scaffold gap size wrong estimation (local) 3412362 3415864 596940 600421 CM091766.1 scf7180002754917 98.26 True CONTIG scf7180002754917 601631 misassembled 1244399 1258780 14363 1 CM091763.1 scf7180002754918 99.62 True fake: scaffold gap size wrong estimation (local) 1212680 1241239 52067 23500 CM091763.1 scf7180002754918 99.83 True relocation, scaffold gap is present, inconsistency = -31686 1241274 1244345 55159 52088 CM091763.1 scf7180002754918 99.9 True fake: scaffold gap size wrong estimation (local) 1167822 1212688 128565 83617 CM091763.1 scf7180002754918 99.79 True relocation, scaffold gap is present, inconsistency = -10722 1162534 1167546 144577 139563 CM091763.1 scf7180002754918 99.88 True fake: scaffold gap size wrong estimation (local) 1142657 1162577 169013 149108 CM091763.1 scf7180002754918 99.8 True relocation, scaffold gap is present, inconsistency = -16883 1137240 1142760 191312 185793 CM091763.1 scf7180002754918 99.96 True fake: scaffold gap size wrong estimation (local) 967512 1136844 361141 191708 CM091763.1 scf7180002754918 99.67 True relocation, scaffold gap is present, inconsistency = -18744 965719 966933 381678 380464 CM091763.1 scf7180002754918 99.92 True fake: scaffold gap size wrong estimation (local) 942721 965298 404679 382099 CM091763.1 scf7180002754918 99.95 True fake: scaffold gap size wrong estimation (local) 917173 942537 430228 404863 CM091763.1 scf7180002754918 99.91 True CONTIG scf7180002754918 430228 misassembled 14504142 14509870 1 5738 CM091757.1 scf7180002754919 99.34 True fake: scaffold gap size wrong estimation (local) 14510084 14539977 5947 35682 CM091757.1 scf7180002754919 97.14 True fake: scaffold gap size wrong estimation (local) 14540482 14574088 42591 75970 CM091757.1 scf7180002754919 98.8 True fake: scaffold gap size wrong estimation (local) 14574579 14644285 77755 147491 CM091757.1 scf7180002754919 99.59 True relocation, scaffold gap is present, inconsistency = -70086 14644273 14649872 217565 223198 CM091757.1 scf7180002754919 99.24 True fake: scaffold gap size wrong estimation (local) 14650124 14670045 223316 243244 CM091757.1 scf7180002754919 99.86 True relocation, scaffold gap is present, inconsistency = -10947 14670827 14699485 254973 283636 CM091757.1 scf7180002754919 99.82 True relocation, scaffold gap is present, inconsistency = -12273 14699367 14731318 295791 327720 CM091757.1 scf7180002754919 99.53 True relocation, scaffold gap is present, inconsistency = -20318 14731695 14816979 348415 433668 CM091757.1 scf7180002754919 99.64 True fake: scaffold gap size wrong estimation (local) 14819451 15032193 433689 664763 CM091757.1 scf7180002754919 98.61 True CONTIG scf7180002754919 664763 misassembled 2987241 2995081 205609 213452 CM091762.1 scf7180002754920 99.41 True unknown 2995095 2996192 218646 219744 CM091762.1 scf7180002754920 99.55 True unknown 2952440 2979199 299191 325991 CM091762.1 scf7180002754920 99.25 True unknown 2979893 2987139 345729 353020 CM091762.1 scf7180002754920 98.89 True unknown 62184 79722 458439 475980 CM091762.1 scf7180002754920 99.93 True unknown 2996293 2999188 641479 644372 CM091762.1 scf7180002754920 99.79 True unknown 2999240 3005281 650151 656192 CM091762.1 scf7180002754920 99.77 True unknown 8568 12272 683096 686805 CM091762.1 scf7180002754920 99.81 True unknown 1970651 1984156 700065 686560 CM091753.1 scf7180002754920 99.79 True unknown 1984401 2020204 735894 700086 CM091753.1 scf7180002754920 99.79 True unknown 12230 25441 760182 773393 CM091762.1 scf7180002754920 99.97 True unknown 1944917 1970388 811645 786222 CM091753.1 scf7180002754920 99.71 True unknown 41021 56017 827088 812094 CM091762.1 scf7180002754920 99.95 True unknown 1929776 1944877 862308 847227 CM091753.1 scf7180002754920 99.67 True unknown 1921213 1929609 882822 874412 CM091753.1 scf7180002754920 99.05 True unknown 1909821 1921308 901653 890151 CM091753.1 scf7180002754920 99.65 True unknown 4931220 4967611 945291 908919 CM091754.1 scf7180002754920 99.91 True unknown 1878232 1909706 976776 945254 CM091753.1 scf7180002754920 99.65 True unknown 1853076 1877500 1001898 977447 CM091753.1 scf7180002754920 99.55 True unknown 1820544 1852930 1034316 1002111 CM091753.1 scf7180002754920 98.81 True unknown CONTIG scf7180002754920 1034327 mis_unaligned 7264099 7269873 5880 93 CM091767.1 scf7180002754921 98.58 True fake: scaffold gap size wrong estimation (local) 7258253 7260541 10928 8652 CM091767.1 scf7180002754921 98.6 True fake: scaffold gap size wrong estimation (local) 7251708 7257405 17862 12161 CM091767.1 scf7180002754921 98.81 True local misassembly 7240582 7250821 28067 17863 CM091767.1 scf7180002754921 98.46 True fake: scaffold gap size wrong estimation (local) 7224268 7240178 44271 28341 CM091767.1 scf7180002754921 99.04 True fake: scaffold gap size wrong estimation (local) 7218218 7223422 50197 44834 CM091767.1 scf7180002754921 97.04 True local misassembly 7187018 7217574 80304 50198 CM091767.1 scf7180002754921 96.13 True fake: scaffold gap size wrong estimation (local) 7174435 7185020 92980 82317 CM091767.1 scf7180002754921 98.5 True fake: scaffold gap size wrong estimation (local) 7167086 7174211 105321 98198 CM091767.1 scf7180002754921 97.83 True indel: indel (> 5bp) 7165357 7166841 107156 105641 CM091767.1 scf7180002754921 96.71 True indel: indel (> 5bp) 7158484 7165256 114004 107220 CM091767.1 scf7180002754921 99.1 True fake: scaffold gap size wrong estimation (local) 7155242 7157690 117625 115178 CM091767.1 scf7180002754921 99.31 True fake: scaffold gap size wrong estimation (local) 7135396 7155138 139018 119306 CM091767.1 scf7180002754921 99.16 True local misassembly 7107342 7134869 166823 139198 CM091767.1 scf7180002754921 99.04 True local misassembly 7075624 7106883 197670 167049 CM091767.1 scf7180002754921 97.15 True indel: indel (> 5bp) 7052323 7075537 220992 197765 CM091767.1 scf7180002754921 99.72 True relocation, scaffold gap is present, inconsistency = -23487 7041495 7052052 255302 244750 CM091767.1 scf7180002754921 99.86 True fake: scaffold gap size wrong estimation (extensive) 7009713 7041198 296689 265212 CM091767.1 scf7180002754921 99.89 True relocation, scaffold gap is present, inconsistency = -31240 7032568 7033191 305074 304451 CM091767.1 scf7180002754921 100.0 True fake: scaffold gap size wrong estimation (local) 6997205 7009188 340714 328731 CM091767.1 scf7180002754921 99.93 True indel: indel (> 5bp) 6962795 6997180 375121 340747 CM091767.1 scf7180002754921 99.82 True fake: scaffold gap size wrong estimation (local) 6941423 6961436 396260 376517 CM091767.1 scf7180002754921 98.3 True CONTIG scf7180002754921 396260 misassembled 16153206 16153924 1 719 CM091753.1 scf7180002754922 99.3 True relocation, inconsistency = 81327 16235667 16238212 1135 3696 CM091753.1 scf7180002754922 96.42 True indel: indel (> 5bp) 16238430 16273290 3942 38900 CM091753.1 scf7180002754922 99.03 True fake: scaffold gap size wrong estimation (local) 16273308 16283871 44273 54840 CM091753.1 scf7180002754922 99.45 True fake: scaffold gap size wrong estimation (local) 16283869 16321493 55816 93477 CM091753.1 scf7180002754922 99.36 True fake: scaffold gap size wrong estimation (local) 16321782 16361692 93954 133630 CM091753.1 scf7180002754922 98.61 True relocation, scaffold gap is present, inconsistency = -22378 16361834 16372585 156150 166879 CM091753.1 scf7180002754922 99.32 True indel: indel (> 5bp) 16372835 16434853 167073 229150 CM091753.1 scf7180002754922 99.27 True indel: indel (> 5bp) 16434905 16439110 229217 233425 CM091753.1 scf7180002754922 99.33 True indel: indel (> 5bp) 16439179 16463691 233541 258056 CM091753.1 scf7180002754922 99.18 True relocation, scaffold gap is present, inconsistency = -16361 16464193 16511954 274919 322571 CM091753.1 scf7180002754922 99.15 True relocation, scaffold gap is present, inconsistency = -33911 16511900 16524833 356428 369353 CM091753.1 scf7180002754922 99.47 True fake: scaffold gap size wrong estimation (local) 16524845 16548691 370424 394282 CM091753.1 scf7180002754922 99.15 True CONTIG scf7180002754922 394292 misassembled 11685089 11766739 81759 25 CM091758.1 scf7180002754923 99.66 True fake: scaffold gap size wrong estimation (local) 11650206 11684332 115757 81866 CM091758.1 scf7180002754923 98.84 True fake: scaffold gap size wrong estimation (local) 11588318 11650204 183425 121275 CM091758.1 scf7180002754923 99.42 True relocation, scaffold gap is present, inconsistency = -38023 11543715 11588288 265755 221478 CM091758.1 scf7180002754923 98.82 True relocation, scaffold gap is present, inconsistency = -10628 11532855 11543681 287241 276417 CM091758.1 scf7180002754923 99.82 True fake: scaffold gap size wrong estimation (local) 11450363 11532606 369545 287333 CM091758.1 scf7180002754923 99.69 True translocation, scaffold gap is present 5376791 5381564 369576 374349 CM091768.1 scf7180002754923 100.0 True fake: scaffold gap size wrong estimation (local) 5381646 5385568 379084 383006 CM091768.1 scf7180002754923 100.0 True fake: not a misassembly (possible transposable element) 11448957 11450457 384530 383027 CM091758.1 scf7180002754923 99.8 True fake: not a misassembly (possible transposable element) 5385892 5387236 384647 385991 CM091768.1 scf7180002754923 100.0 True fake: not a misassembly (possible transposable element) 11447585 11449007 387428 386012 CM091758.1 scf7180002754923 99.37 True fake: not a misassembly (possible transposable element) 5387408 5389952 387479 390024 CM091768.1 scf7180002754923 99.96 True fake: not a misassembly (possible transposable element) 11442385 11447576 396276 391083 CM091758.1 scf7180002754923 99.9 True fake: not a misassembly (possible transposable element) 5389233 5389748 396297 396823 CM091768.1 scf7180002754923 100.0 True fake: scaffold gap size wrong estimation (local) 5391602 5394976 398079 401453 CM091768.1 scf7180002754923 100.0 True translocation, scaffold gap is present 11376088 11442499 469425 403564 CM091758.1 scf7180002754923 98.76 True indel: indel (> 5bp) 11371730 11375990 473747 469484 CM091758.1 scf7180002754923 99.65 True relocation, scaffold gap is present, inconsistency = -65697 11398840 11399616 512382 511558 CM091758.1 scf7180002754923 97.23 True fake: scaffold gap size wrong estimation (local) 11368236 11371724 542959 539469 CM091758.1 scf7180002754923 99.83 True local misassembly 11353753 11367873 557440 543480 CM091758.1 scf7180002754923 98.55 True CONTIG scf7180002754923 562940 misassembled 9529265 9544060 6 14791 CM091751.1 scf7180002754924 99.67 True fake: scaffold gap size wrong estimation (extensive) 9544452 9569957 22986 48449 CM091751.1 scf7180002754924 99.42 True relocation, scaffold gap is present, inconsistency = -13069 9569918 9635644 61479 127183 CM091751.1 scf7180002754924 99.38 True fake: scaffold gap size wrong estimation (extensive) 9635672 9650897 136413 150979 CM091751.1 scf7180002754924 95.16 True relocation, scaffold gap is present, inconsistency = -11894 9650942 9769592 162918 278415 CM091751.1 scf7180002754924 96.71 True fake: scaffold gap size wrong estimation (local) 9769968 9797635 278728 305210 CM091751.1 scf7180002754924 95.04 True fake: scaffold gap size wrong estimation (local) 9798908 9802802 309549 313445 CM091751.1 scf7180002754924 99.51 True fake: scaffold gap size wrong estimation (local) 9803128 9806630 316257 319759 CM091751.1 scf7180002754924 99.63 True fake: scaffold gap size wrong estimation (local) 9808297 9809508 324336 325547 CM091751.1 scf7180002754924 99.42 True fake: scaffold gap size wrong estimation (local) 9809509 9810164 325563 326218 CM091751.1 scf7180002754924 98.78 True indel: indel (<= 5bp) 9810165 9813106 326223 329164 CM091751.1 scf7180002754924 99.56 True indel: indel (<= 5bp) 9813111 9817865 329165 333919 CM091751.1 scf7180002754924 99.71 True fake: scaffold gap size wrong estimation (local) 9819871 9820539 336151 336819 CM091751.1 scf7180002754924 99.7 True fake: scaffold gap size wrong estimation (local) 9820540 9822253 336832 338545 CM091751.1 scf7180002754924 99.3 True indel: indel (> 5bp) 9822276 9823161 338546 339431 CM091751.1 scf7180002754924 97.63 True indel: indel (> 5bp) 9823259 9824741 339547 341029 CM091751.1 scf7180002754924 99.6 True fake: scaffold gap size wrong estimation (local) 9824742 9826300 341053 342611 CM091751.1 scf7180002754924 99.55 True indel: indel (<= 5bp) 9826302 9828364 342612 344674 CM091751.1 scf7180002754924 99.66 True indel: indel (> 5bp) 9828365 9828870 344693 345198 CM091751.1 scf7180002754924 99.01 True fake: scaffold gap size wrong estimation (local) 9829828 9839022 348904 358537 CM091751.1 scf7180002754924 95.71 True fake: scaffold gap size wrong estimation (local) 9839013 9854196 359577 374728 CM091751.1 scf7180002754924 99.34 True fake: scaffold gap size wrong estimation (local) 9854436 9921527 380297 447023 CM091751.1 scf7180002754924 98.73 True fake: scaffold gap size wrong estimation (local) 9921611 9931692 447099 457226 CM091751.1 scf7180002754924 99.6 True fake: scaffold gap size wrong estimation (local) 9931697 10013462 460261 541985 CM091751.1 scf7180002754924 99.59 True translocation 8763258 8855650 541986 634137 CM091759.1 scf7180002754924 99.48 True relocation, scaffold gap is present, inconsistency = -23240 8856302 8859111 658029 660839 CM091759.1 scf7180002754924 99.89 True fake: scaffold gap size wrong estimation (local) 8859130 8997738 663551 801994 CM091759.1 scf7180002754924 99.3 True fake: scaffold gap size wrong estimation (local) 8998137 9063723 802104 867707 CM091759.1 scf7180002754924 99.18 True relocation, scaffold gap is present, inconsistency = -60493 9064704 9081626 929181 946122 CM091759.1 scf7180002754924 99.47 True fake: scaffold gap size wrong estimation (local) 9081611 9096727 949952 964771 CM091759.1 scf7180002754924 97.37 True fake: scaffold gap size wrong estimation (extensive) 9096618 9125718 972143 1001261 CM091759.1 scf7180002754924 99.3 True relocation, scaffold gap is present, inconsistency = -12163 9125726 9192092 1013432 1079839 CM091759.1 scf7180002754924 99.45 True relocation, scaffold gap is present, inconsistency = -15001 9192695 9206915 1095443 1109666 CM091759.1 scf7180002754924 99.92 True CONTIG scf7180002754924 1116872 misassembled 13548726 13552527 3804 1 CM091757.1 scf7180002754925 99.66 True fake: scaffold gap size wrong estimation (local) 13459066 13547252 109944 3936 CM091757.1 scf7180002754925 95.09 True relocation, scaffold gap is present, inconsistency = -11146 13375881 13459070 204285 121086 CM091757.1 scf7180002754925 99.66 True relocation, scaffold gap is present, inconsistency = -27519 13365888 13375426 241795 232259 CM091757.1 scf7180002754925 99.95 True fake: scaffold gap size wrong estimation (local) 13293007 13365696 314689 241987 CM091757.1 scf7180002754925 99.95 True fake: scaffold gap size wrong estimation (local) 13269592 13292987 343553 320090 CM091757.1 scf7180002754925 99.64 True fake: scaffold gap size wrong estimation (local) 13206240 13268387 412214 350310 CM091757.1 scf7180002754925 99.53 True relocation, inconsistency = 24008 13167561 13176496 417950 426887 CM091757.1 scf7180002754925 99.92 True inversion, scaffold gap is present 13220509 13221020 466358 465846 CM091757.1 scf7180002754925 100.0 True fake: scaffold gap size wrong estimation (local) 13211194 13211693 475701 475184 CM091757.1 scf7180002754925 100.0 True inversion, scaffold gap is present 13176575 13185702 495422 504549 CM091757.1 scf7180002754925 99.97 True fake: scaffold gap size wrong estimation (local) 13186437 13195647 506601 515811 CM091757.1 scf7180002754925 100.0 True fake: scaffold gap size wrong estimation (extensive) 13195688 13198633 524853 527796 CM091757.1 scf7180002754925 99.93 True translocation 8897195 8899113 532375 530456 CM091752.1 scf7180002754925 99.95 True translocation 13109751 13159873 582488 532376 CM091757.1 scf7180002754925 99.91 True relocation, scaffold gap is present, inconsistency = -49028 13107830 13109227 633437 632040 CM091757.1 scf7180002754925 100.0 True local misassembly 13103594 13106670 636514 633438 CM091757.1 scf7180002754925 100.0 True CONTIG scf7180002754925 636954 misassembled 5755901 5813189 1 57034 CM091764.1 scf7180002754926 98.93 True relocation, scaffold gap is present, inconsistency = -31898 5815009 5840274 90752 115972 CM091764.1 scf7180002754926 99.38 True fake: scaffold gap size wrong estimation (extensive) 5840536 5875464 124677 159648 CM091764.1 scf7180002754926 99.4 True relocation, scaffold gap is present, inconsistency = -34926 5875459 5905985 194569 225086 CM091764.1 scf7180002754926 99.39 True relocation, scaffold gap is present, inconsistency = -22352 5894087 5894743 235540 236197 CM091764.1 scf7180002754926 99.63 True fake: scaffold gap size wrong estimation (local) 5906217 5964653 247690 306224 CM091764.1 scf7180002754926 99.61 True relocation, scaffold gap is present, inconsistency = -49137 5964662 6076126 355370 466715 CM091764.1 scf7180002754926 99.22 True indel: indel (> 5bp) 6076172 6153439 466768 544058 CM091764.1 scf7180002754926 99.71 True relocation, scaffold gap is present, inconsistency = -42801 6153444 6159856 586864 593278 CM091764.1 scf7180002754926 99.81 True CONTIG scf7180002754926 598642 misassembled 2450108 2498635 48636 20 CM091757.1 scf7180002754927 99.33 True relocation, scaffold gap is present, inconsistency = -12746 2429020 2450123 82305 61367 CM091757.1 scf7180002754927 98.6 True relocation, scaffold gap is present, inconsistency = -14031 2393016 2429384 131141 95972 CM091757.1 scf7180002754927 95.96 True indel: indel (> 5bp) 2346285 2392982 177916 131169 CM091757.1 scf7180002754927 99.43 True local misassembly 2341036 2344534 181414 177917 CM091757.1 scf7180002754927 99.78 True local misassembly 2315612 2340840 206750 181488 CM091757.1 scf7180002754927 99.17 True relocation, scaffold gap is present, inconsistency = -51023 2288436 2315052 284944 258333 CM091757.1 scf7180002754927 99.24 True relocation, scaffold gap is present, inconsistency = -21856 2267234 2287520 327990 307716 CM091757.1 scf7180002754927 99.37 True relocation, scaffold gap is present, inconsistency = -18669 2258677 2267001 355228 346892 CM091757.1 scf7180002754927 99.28 True indel: indel (> 5bp) 2228313 2258622 384701 355292 CM091757.1 scf7180002754927 96.35 True relocation, scaffold gap is present, inconsistency = -16582 2221809 2227976 407785 401620 CM091757.1 scf7180002754927 99.59 True fake: scaffold gap size wrong estimation (local) 2218229 2221691 417113 413652 CM091757.1 scf7180002754927 99.48 True fake: scaffold gap size wrong estimation (local) 2148546 2218172 486810 417174 CM091757.1 scf7180002754927 99.79 True relocation, scaffold gap is present, inconsistency = -59041 2033895 2148333 660137 546064 CM091757.1 scf7180002754927 98.9 True fake: scaffold gap size wrong estimation (local) 2001223 2032474 691297 660539 CM091757.1 scf7180002754927 97.84 True CONTIG scf7180002754927 691297 misassembled 7497887 7549421 1 51521 CM091758.1 scf7180002754928 99.67 True indel: indel (> 5bp) 7549523 7611174 51630 112616 CM091758.1 scf7180002754928 98.26 True indel: indel (<= 5bp) 7611262 7629183 112699 130390 CM091758.1 scf7180002754928 98.14 True relocation, scaffold gap is present, inconsistency = -14067 7629935 7635216 145209 150514 CM091758.1 scf7180002754928 99.83 True fake: scaffold gap size wrong estimation (local) 7635207 7772111 151113 288040 CM091758.1 scf7180002754928 99.37 True local misassembly 7772188 7793324 288232 309374 CM091758.1 scf7180002754928 99.43 True indel: indel (<= 5bp) 7793369 7820414 309414 336522 CM091758.1 scf7180002754928 99.24 True fake: scaffold gap size wrong estimation (local) 7820858 7830303 343775 353254 CM091758.1 scf7180002754928 99.31 True fake: scaffold gap size wrong estimation (local) 7830347 7840487 358250 368166 CM091758.1 scf7180002754928 97.04 True fake: scaffold gap size wrong estimation (local) 7840533 7934054 370862 464566 CM091758.1 scf7180002754928 99.14 True indel: indel (> 5bp) 7934158 8109234 464615 639374 CM091758.1 scf7180002754928 99.04 True relocation, scaffold gap is present, inconsistency = -21321 8109173 8126287 660634 677754 CM091758.1 scf7180002754928 99.59 True fake: scaffold gap size wrong estimation (local) 8126288 8216603 679458 769848 CM091758.1 scf7180002754928 99.57 True relocation, scaffold gap is present, inconsistency = -26191 8217081 8457462 796517 1034683 CM091758.1 scf7180002754928 97.74 True relocation, scaffold gap is present, inconsistency = -33417 8457532 8462230 1068170 1072871 CM091758.1 scf7180002754928 99.04 True fake: scaffold gap size wrong estimation (local) 8462551 8489054 1073216 1099719 CM091758.1 scf7180002754928 99.27 True relocation, scaffold gap is present, inconsistency = -15390 8489060 8493897 1115115 1119950 CM091758.1 scf7180002754928 99.63 True fake: scaffold gap size wrong estimation (local) 8494052 8616523 1120098 1242657 CM091758.1 scf7180002754928 99.22 True CONTIG scf7180002754928 1243048 misassembled 11929204 11990831 1 61649 CM091758.1 scf7180002754929 99.73 True local misassembly 11991014 11997101 61710 67794 CM091758.1 scf7180002754929 99.49 True fake: scaffold gap size wrong estimation (local) 11997197 12280991 67882 351759 CM091758.1 scf7180002754929 99.73 True fake: scaffold gap size wrong estimation (local) 12281014 12364135 353713 436412 CM091758.1 scf7180002754929 99.34 True relocation, scaffold gap is present, inconsistency = -34004 12364303 12455557 470584 561827 CM091758.1 scf7180002754929 99.9 True relocation, scaffold gap is present, inconsistency = -91070 12367875 12368388 565215 565728 CM091758.1 scf7180002754929 100.0 True fake: scaffold gap size wrong estimation (local) 12456307 12467002 653880 664613 CM091758.1 scf7180002754929 99.79 True fake: scaffold gap size wrong estimation (local) 12467104 12586976 664932 784837 CM091758.1 scf7180002754929 99.86 True fake: scaffold gap size wrong estimation (local) 12587862 12634175 785737 832028 CM091758.1 scf7180002754929 99.88 True relocation, scaffold gap is present, inconsistency = -24963 12634631 12665270 857447 888084 CM091758.1 scf7180002754929 99.88 True relocation, scaffold gap is present, inconsistency = -13547 12665323 12785785 901684 1022023 CM091758.1 scf7180002754929 99.87 True relocation, scaffold gap is present, inconsistency = -22834 12787781 12795433 1046853 1054523 CM091758.1 scf7180002754929 99.93 True CONTIG scf7180002754929 1054523 misassembled 10694098 10700982 451 7107 CM091766.1 scf7180002754930 96.48 True relocation, scaffold gap is present, inconsistency = 15264 10716267 10736050 7128 26899 CM091766.1 scf7180002754930 99.73 True relocation, scaffold gap is present, inconsistency = -35125 10700946 10704502 26920 30389 CM091766.1 scf7180002754930 97.34 True fake: scaffold gap size wrong estimation (local) 10705223 10708408 30525 33710 CM091766.1 scf7180002754930 99.87 True fake: scaffold gap size wrong estimation (local) 10709557 10716124 33731 40297 CM091766.1 scf7180002754930 99.79 True inversion, scaffold gap is present 10708295 10709375 41407 40318 CM091766.1 scf7180002754930 99.08 True relocation, scaffold gap is present, inconsistency = 7860 10736542 10760756 60714 84948 CM091766.1 scf7180002754930 99.89 True relocation, scaffold gap is present, inconsistency = -23580 10761018 10820490 108790 168264 CM091766.1 scf7180002754930 99.78 True relocation, scaffold gap is present, inconsistency = -49468 10820139 10855980 217381 252705 CM091766.1 scf7180002754930 98.35 True relocation, scaffold gap is present, inconsistency = -11174 10855999 10901262 263898 309152 CM091766.1 scf7180002754930 99.68 True CONTIG scf7180002754930 309152 misassembled 5697814 5734349 36494 1 CM091763.1 scf7180002754931 99.5 True fake: scaffold gap size wrong estimation (extensive) 5685976 5697676 57893 46189 CM091763.1 scf7180002754931 99.78 True relocation, scaffold gap is present, inconsistency = -11563 5622114 5685963 133341 69469 CM091763.1 scf7180002754931 99.68 True indel: indel (> 5bp) 5405157 5622073 350404 133391 CM091763.1 scf7180002754931 99.55 True relocation, scaffold gap is present, inconsistency = -97810 5484179 5484723 369219 368648 CM091763.1 scf7180002754931 99.8 True fake: scaffold gap size wrong estimation (local) 5374572 5404868 477697 448143 CM091763.1 scf7180002754931 97.0 True fake: scaffold gap size wrong estimation (local) 5333619 5374482 517732 477780 CM091763.1 scf7180002754931 96.48 True indel: indel (<= 5bp) 5329337 5333343 522017 518010 CM091763.1 scf7180002754931 99.18 True local misassembly 5293247 5329009 557817 522193 CM091763.1 scf7180002754931 98.15 True fake: scaffold gap size wrong estimation (local) 5232082 5292540 617988 558205 CM091763.1 scf7180002754931 97.88 True relocation, scaffold gap is present, inconsistency = -57869 5214847 5231888 693084 676051 CM091763.1 scf7180002754931 99.87 True relocation, scaffold gap is present, inconsistency = -16725 5048765 5214850 875933 709806 CM091763.1 scf7180002754931 99.7 True relocation, scaffold gap is present, inconsistency = -81763 5090823 5091338 915672 915123 CM091763.1 scf7180002754931 95.1 True fake: scaffold gap size wrong estimation (local) 5046074 5048612 959868 957322 CM091763.1 scf7180002754931 98.74 True fake: scaffold gap size wrong estimation (local) 5036296 5045595 970814 961537 CM091763.1 scf7180002754931 99.24 True fake: scaffold gap size wrong estimation (extensive) 4988853 5036263 1026645 979966 CM091763.1 scf7180002754931 97.81 True indel: stretch of mismatches 4969446 4988852 1045877 1026646 CM091763.1 scf7180002754931 98.08 True fake: scaffold gap size wrong estimation (extensive) 4965126 4969428 1059419 1055116 CM091763.1 scf7180002754931 99.65 True CONTIG scf7180002754931 1059419 misassembled 6678013 6699493 21544 1 CM091757.1 scf7180002754932 98.73 True fake: scaffold gap size wrong estimation (local) 6671659 6677678 33011 26988 CM091757.1 scf7180002754932 99.47 True fake: scaffold gap size wrong estimation (local) 6651032 6671017 58594 38825 CM091757.1 scf7180002754932 97.2 True indel: indel (> 5bp) 6630600 6651010 79122 58626 CM091757.1 scf7180002754932 99.0 True fake: scaffold gap size wrong estimation (local) 6584076 6630537 126138 79446 CM091757.1 scf7180002754932 98.35 True fake: scaffold gap size wrong estimation (local) 6583073 6583837 127095 126331 CM091757.1 scf7180002754932 99.74 True local misassembly 6578837 6581454 131340 128723 CM091757.1 scf7180002754932 99.62 True fake: scaffold gap size wrong estimation (local) 6564582 6577000 144966 132526 CM091757.1 scf7180002754932 99.12 True indel: indel (> 5bp) 6482627 6564556 226361 145001 CM091757.1 scf7180002754932 98.61 True indel: indel (> 5bp) 6467715 6482339 241338 226680 CM091757.1 scf7180002754932 98.7 True local misassembly 6394899 6467187 314143 241883 CM091757.1 scf7180002754932 99.58 True translocation, scaffold gap is present 5257983 5260426 479347 476904 CM091768.1 scf7180002754932 100.0 True translocation, scaffold gap is present 6354856 6394895 519414 479368 CM091757.1 scf7180002754932 99.84 True local misassembly 6137892 6354007 735478 520212 CM091757.1 scf7180002754932 99.19 True fake: scaffold gap size wrong estimation (local) 6026195 6137833 849175 738096 CM091757.1 scf7180002754932 98.79 True translocation, scaffold gap is present 2586298 2587829 850727 849196 CM091754.1 scf7180002754932 98.89 True local misassembly 2582980 2585146 854053 851887 CM091754.1 scf7180002754932 99.82 True local misassembly 2581225 2581973 855804 855056 CM091754.1 scf7180002754932 99.07 True local misassembly 2579472 2580221 857537 856788 CM091754.1 scf7180002754932 98.67 True indel: indel (<= 5bp) 2578803 2579470 858205 857538 CM091754.1 scf7180002754932 98.8 True indel: indel (<= 5bp) 2576778 2578700 860234 858312 CM091754.1 scf7180002754932 99.32 True indel: indel (> 5bp) 2574874 2576340 862158 860692 CM091754.1 scf7180002754932 99.45 True fake: scaffold gap size wrong estimation (local) 2571906 2573323 865617 864200 CM091754.1 scf7180002754932 99.79 True fake: scaffold gap size wrong estimation (local) 2570693 2571905 866959 865747 CM091754.1 scf7180002754932 99.59 True indel: indel (> 5bp) 2569789 2570475 867910 867224 CM091754.1 scf7180002754932 99.56 True fake: scaffold gap size wrong estimation (local) 2568416 2568926 869645 869135 CM091754.1 scf7180002754932 97.85 True translocation, scaffold gap is present 6012165 6025835 883467 869751 CM091757.1 scf7180002754932 99.11 True translocation, scaffold gap is present 2559279 2568415 892936 883516 CM091754.1 scf7180002754932 97.0 True translocation, scaffold gap is present 5995397 6011614 909400 893179 CM091757.1 scf7180002754932 99.31 True local misassembly 5980701 5995069 923951 909588 CM091757.1 scf7180002754932 99.46 True fake: scaffold gap size wrong estimation (local) 5928458 5979897 975344 924121 CM091757.1 scf7180002754932 98.77 True CONTIG scf7180002754932 975344 misassembled 14911071 14912111 718 1758 CM091755.1 scf7180002754933 99.71 True indel: indel (> 5bp) 14912112 14913237 1768 2893 CM091755.1 scf7180002754933 99.29 True local misassembly 14913513 14914059 2913 3459 CM091755.1 scf7180002754933 99.82 True indel: indel (<= 5bp) 14914294 14915250 3696 4652 CM091755.1 scf7180002754933 99.16 True indel: indel (<= 5bp) 14915474 14915979 4874 5379 CM091755.1 scf7180002754933 99.21 True indel: indel (<= 5bp) 14915980 14918269 5381 7670 CM091755.1 scf7180002754933 99.52 True indel: indel (<= 5bp) 14918329 14919189 7728 8588 CM091755.1 scf7180002754933 100.0 True fake: scaffold gap size wrong estimation (local) 14919818 14920349 8870 9401 CM091755.1 scf7180002754933 99.44 True fake: scaffold gap size wrong estimation (local) 14921497 14922076 10556 11135 CM091755.1 scf7180002754933 99.48 True indel: indel (> 5bp) 14922094 14923253 11167 12326 CM091755.1 scf7180002754933 99.83 True indel: indel (<= 5bp) 14923647 14924589 12721 13663 CM091755.1 scf7180002754933 99.05 True indel: indel (<= 5bp) 14924711 14927928 13784 17042 CM091755.1 scf7180002754933 98.52 True fake: scaffold gap size wrong estimation (local) 14928621 14931748 17281 20401 CM091755.1 scf7180002754933 99.17 True fake: scaffold gap size wrong estimation (local) 14931793 14941919 22422 32588 CM091755.1 scf7180002754933 98.37 True fake: scaffold gap size wrong estimation (local) 14942703 14950657 33376 41369 CM091755.1 scf7180002754933 99.26 True fake: scaffold gap size wrong estimation (local) 14951281 14952575 42498 43793 CM091755.1 scf7180002754933 99.44 True indel: indel (> 5bp) 14952595 14957268 43803 48417 CM091755.1 scf7180002754933 97.06 True indel: indel (<= 5bp) 14957379 14964274 48533 55425 CM091755.1 scf7180002754933 98.81 True fake: scaffold gap size wrong estimation (extensive) 14965341 14971382 64270 70278 CM091755.1 scf7180002754933 98.29 True indel: stretch of mismatches 14971383 14996151 70279 94601 CM091755.1 scf7180002754933 97.68 True fake: scaffold gap size wrong estimation (local) 14996164 15034277 97177 135225 CM091755.1 scf7180002754933 99.31 True indel: indel (> 5bp) 15034476 15065589 135372 166520 CM091755.1 scf7180002754933 99.54 True indel: indel (> 5bp) 15065811 15068016 166671 168878 CM091755.1 scf7180002754933 99.82 True relocation, scaffold gap is present, inconsistency = -28382 15068132 15092216 197376 221336 CM091755.1 scf7180002754933 98.3 True fake: scaffold gap size wrong estimation (local) 15092177 15096296 223123 227269 CM091755.1 scf7180002754933 99.1 True fake: scaffold gap size wrong estimation (local) 15096962 15114600 227927 245600 CM091755.1 scf7180002754933 99.16 True fake: scaffold gap size wrong estimation (local) 15115170 15122826 248729 256404 CM091755.1 scf7180002754933 99.11 True fake: scaffold gap size wrong estimation (local) 15123126 15127823 259174 263870 CM091755.1 scf7180002754933 99.09 True fake: scaffold gap size wrong estimation (local) 15128061 15132866 268058 272865 CM091755.1 scf7180002754933 99.58 True translocation, scaffold gap is present 10759827 10766256 279339 272886 CM091765.1 scf7180002754933 99.88 True translocation, scaffold gap is present 15132746 15136319 280821 284431 CM091755.1 scf7180002754933 98.09 True fake: scaffold gap size wrong estimation (local) 15136766 15142455 285918 291615 CM091755.1 scf7180002754933 99.47 True fake: scaffold gap size wrong estimation (local) 15142511 15145275 295677 298440 CM091755.1 scf7180002754933 99.21 True local misassembly 15145460 15149657 298503 302702 CM091755.1 scf7180002754933 99.12 True fake: scaffold gap size wrong estimation (local) 15149694 15183453 307454 341236 CM091755.1 scf7180002754933 99.45 True relocation, scaffold gap is present, inconsistency = -33358 15183779 15192419 374920 383566 CM091755.1 scf7180002754933 99.75 True fake: scaffold gap size wrong estimation (extensive) 15192801 15213183 391785 411717 CM091755.1 scf7180002754933 96.91 True translocation, scaffold gap is present 5910247 5924387 436799 422658 CM091768.1 scf7180002754933 99.99 True translocation, scaffold gap is present 15213504 15214951 436820 438268 CM091755.1 scf7180002754933 99.65 True translocation, scaffold gap is present 5847283 5909727 514463 451993 CM091768.1 scf7180002754933 99.99 True relocation, scaffold gap is present, inconsistency = -22665 5837146 5846087 547264 538324 CM091768.1 scf7180002754933 99.99 True fake: scaffold gap size wrong estimation (local) 5821186 5836540 562961 547784 CM091768.1 scf7180002754933 98.64 True fake: scaffold gap size wrong estimation (extensive) 5818154 5820664 575096 572586 CM091768.1 scf7180002754933 100.0 True fake: scaffold gap size wrong estimation (local) 5800038 5818319 595543 577272 CM091768.1 scf7180002754933 99.91 True fake: scaffold gap size wrong estimation (local) 5797062 5799915 598500 595646 CM091768.1 scf7180002754933 99.96 True CONTIG scf7180002754933 598500 misassembled 7150603 7151563 961 1 CM091751.1 scf7180002754934 99.58 True fake: scaffold gap size wrong estimation (local) 7024374 7150145 127136 1389 CM091751.1 scf7180002754934 99.6 True indel: indel (> 5bp) 7023765 7024292 127757 127230 CM091751.1 scf7180002754934 99.05 True relocation, scaffold gap is present, inconsistency = -39340 7015029 7023496 175840 167366 CM091751.1 scf7180002754934 99.25 True relocation, scaffold gap is present, inconsistency = -7058 7015580 7016226 182370 181701 CM091751.1 scf7180002754934 99.81 True fake: scaffold gap size wrong estimation (local) 7010899 7014783 187062 183173 CM091751.1 scf7180002754934 99.13 True fake: scaffold gap size wrong estimation (local) 7002494 7010750 196932 188640 CM091751.1 scf7180002754934 98.43 True fake: scaffold gap size wrong estimation (local) 6998475 7002052 200947 197324 CM091751.1 scf7180002754934 98.15 True indel: indel (> 5bp) 6997385 6998226 202049 201208 CM091751.1 scf7180002754934 99.88 True indel: indel (<= 5bp) 6996631 6997379 202798 202050 CM091751.1 scf7180002754934 99.47 True indel: indel (> 5bp) 6995822 6996579 203663 202906 CM091751.1 scf7180002754934 99.47 True local misassembly 6993132 6994691 206343 204784 CM091751.1 scf7180002754934 99.94 True indel: indel (<= 5bp) 6992188 6992868 207289 206609 CM091751.1 scf7180002754934 99.41 True indel: indel (<= 5bp) 6991610 6992187 207868 207291 CM091751.1 scf7180002754934 99.83 True indel: indel (<= 5bp) 6990366 6991493 209114 207987 CM091751.1 scf7180002754934 99.73 True local misassembly 6988727 6989344 210752 210135 CM091751.1 scf7180002754934 99.68 True indel: indel (> 5bp) 6986922 6988400 212564 211086 CM091751.1 scf7180002754934 99.73 True fake: scaffold gap size wrong estimation (local) 6984431 6985645 214432 213218 CM091751.1 scf7180002754934 99.26 True indel: indel (<= 5bp) 6983193 6984428 215668 214433 CM091751.1 scf7180002754934 99.68 True fake: scaffold gap size wrong estimation (local) 6981738 6982430 219545 218853 CM091751.1 scf7180002754934 97.26 True local misassembly 6979946 6980637 221336 220645 CM091751.1 scf7180002754934 99.71 True fake: scaffold gap size wrong estimation (local) 6978713 6979241 222276 221748 CM091751.1 scf7180002754934 99.24 True indel: indel (<= 5bp) 6977704 6978711 223284 222277 CM091751.1 scf7180002754934 99.21 True indel: indel (<= 5bp) 6976874 6977612 224116 223378 CM091751.1 scf7180002754934 99.59 True indel: indel (<= 5bp) 6975995 6976871 224993 224117 CM091751.1 scf7180002754934 99.77 True indel: indel (<= 5bp) 6974799 6975963 226190 225026 CM091751.1 scf7180002754934 99.83 True indel: indel (<= 5bp) 6971907 6974472 229080 226515 CM091751.1 scf7180002754934 99.69 True indel: indel (> 5bp) 6970350 6971447 230609 229512 CM091751.1 scf7180002754934 99.45 True fake: scaffold gap size wrong estimation (local) 6951675 6970335 253259 234627 CM091751.1 scf7180002754934 98.78 True relocation, inconsistency = 1115531 5635485 5836143 454179 253260 CM091751.1 scf7180002754934 98.94 True CONTIG scf7180002754934 454235 misassembled 7081915 7193263 111419 1 CM091758.1 scf7180002754935 99.27 True fake: scaffold gap size wrong estimation (local) 7062951 7081919 131713 112710 CM091758.1 scf7180002754935 99.36 True CONTIG scf7180002754935 143283 correct 2772609 2830798 56946 234 CM091751.1 scf7180002754936 96.18 True fake: scaffold gap size wrong estimation (local) 2755410 2770432 73326 57670 CM091751.1 scf7180002754936 97.03 True indel: indel (> 5bp) 2747052 2755393 81757 73371 CM091751.1 scf7180002754936 98.3 True relocation, scaffold gap is present, inconsistency = -12226 2735816 2747050 105231 93985 CM091751.1 scf7180002754936 99.4 True indel: indel (> 5bp) 2725894 2735768 115201 105313 CM091751.1 scf7180002754936 99.29 True indel: indel (> 5bp) 2723564 2725508 117554 115598 CM091751.1 scf7180002754936 98.52 True fake: scaffold gap size wrong estimation (local) 2698929 2722830 142839 118951 CM091751.1 scf7180002754936 98.93 True relocation, scaffold gap is present, inconsistency = -22972 2689403 2698817 175461 165923 CM091751.1 scf7180002754936 96.64 True fake: scaffold gap size wrong estimation (local) 2681013 2688561 186471 178917 CM091751.1 scf7180002754936 98.42 True fake: scaffold gap size wrong estimation (local) 2670566 2680793 196808 186750 CM091751.1 scf7180002754936 97.59 True indel: indel (> 5bp) 2651969 2670547 215365 196864 CM091751.1 scf7180002754936 98.02 True indel: indel (<= 5bp) 2643819 2651941 223334 215395 CM091751.1 scf7180002754936 97.37 True relocation, scaffold gap is present, inconsistency = -11445 2618904 2643336 259304 235262 CM091751.1 scf7180002754936 97.16 True relocation, scaffold gap is present, inconsistency = -14613 2601014 2618862 291474 273959 CM091751.1 scf7180002754936 97.22 True relocation, scaffold gap is present, inconsistency = -13763 2535725 2600997 368382 305254 CM091751.1 scf7180002754936 95.48 True local misassembly 2534516 2535036 369582 369062 CM091751.1 scf7180002754936 98.27 True indel: indel (<= 5bp) 2530802 2534514 373295 369583 CM091751.1 scf7180002754936 99.73 True indel: indel (<= 5bp) 2528274 2530800 375822 373296 CM091751.1 scf7180002754936 99.56 True indel: indel (<= 5bp) 2525841 2527988 378257 376110 CM091751.1 scf7180002754936 99.63 True indel: indel (<= 5bp) 2525051 2525840 379051 378262 CM091751.1 scf7180002754936 100.0 True indel: indel (<= 5bp) 2523807 2525045 380290 379052 CM091751.1 scf7180002754936 99.52 True indel: indel (<= 5bp) 2518690 2523806 385408 380292 CM091751.1 scf7180002754936 99.82 True indel: indel (<= 5bp) 2517228 2518688 386869 385409 CM091751.1 scf7180002754936 99.93 True indel: indel (<= 5bp) 2514880 2517227 389218 386871 CM091751.1 scf7180002754936 99.74 True indel: indel (<= 5bp) 2513687 2514879 390414 389222 CM091751.1 scf7180002754936 99.83 True local misassembly 2510192 2510844 391236 390584 CM091751.1 scf7180002754936 99.85 True indel: indel (<= 5bp) 2509532 2510191 391897 391238 CM091751.1 scf7180002754936 99.24 True CONTIG scf7180002754936 391926 misassembled 953055 961491 8400 1 CM091755.1 scf7180002754937 99.55 True fake: scaffold gap size wrong estimation (local) 951819 953010 10798 9607 CM091755.1 scf7180002754937 100.0 True fake: scaffold gap size wrong estimation (local) 941982 951692 20624 10912 CM091755.1 scf7180002754937 99.96 True fake: scaffold gap size wrong estimation (local) 932210 941558 36611 27261 CM091755.1 scf7180002754937 99.96 True fake: scaffold gap size wrong estimation (local) 920530 931872 51320 39973 CM091755.1 scf7180002754937 99.7 True translocation 6293361 6296880 54772 51321 CM091767.1 scf7180002754937 97.05 True fake: scaffold gap size wrong estimation (local) 6240661 6292792 107114 55174 CM091767.1 scf7180002754937 98.53 True fake: scaffold gap size wrong estimation (local) 6224889 6240484 122996 107377 CM091767.1 scf7180002754937 99.6 True fake: scaffold gap size wrong estimation (local) 6217680 6223702 132690 126537 CM091767.1 scf7180002754937 97.24 True fake: scaffold gap size wrong estimation (local) 6207373 6216369 143010 134012 CM091767.1 scf7180002754937 98.79 True fake: scaffold gap size wrong estimation (local) 6170756 6207334 180549 143988 CM091767.1 scf7180002754937 98.99 True fake: scaffold gap size wrong estimation (local) 6139438 6170541 211758 180762 CM091767.1 scf7180002754937 99.08 True relocation, scaffold gap is present, inconsistency = -28827 5899157 6139338 479997 240685 CM091767.1 scf7180002754937 99.11 True relocation, scaffold gap is present, inconsistency = -43562 5886131 5898667 536637 524049 CM091767.1 scf7180002754937 98.38 True relocation, scaffold gap is present, inconsistency = -11853 5883374 5884635 551247 549986 CM091767.1 scf7180002754937 99.92 True indel: indel (<= 5bp) 5882760 5883373 551862 551249 CM091767.1 scf7180002754937 96.25 True fake: scaffold gap size wrong estimation (local) 5878310 5881329 557396 554377 CM091767.1 scf7180002754937 98.51 True local misassembly 5876490 5877976 558883 557397 CM091767.1 scf7180002754937 99.26 True indel: indel (> 5bp) 5875786 5876481 559579 558884 CM091767.1 scf7180002754937 99.28 True fake: scaffold gap size wrong estimation (local) 5874018 5874798 561389 560609 CM091767.1 scf7180002754937 99.87 True local misassembly 5872625 5873314 562785 562096 CM091767.1 scf7180002754937 98.99 True indel: indel (<= 5bp) 5871390 5872624 564021 562787 CM091767.1 scf7180002754937 98.79 True indel: indel (<= 5bp) 5858772 5871291 576393 564122 CM091767.1 scf7180002754937 97.2 True fake: scaffold gap size wrong estimation (local) 5851312 5858759 589069 581586 CM091767.1 scf7180002754937 98.98 True CONTIG scf7180002754937 589069 misassembled 6948445 6977746 4 29375 CM091759.1 scf7180002754938 99.44 True fake: scaffold gap size wrong estimation (local) 6977764 7000523 30981 53412 CM091759.1 scf7180002754938 97.65 True fake: scaffold gap size wrong estimation (local) 7000814 7024616 59503 83326 CM091759.1 scf7180002754938 99.29 True fake: scaffold gap size wrong estimation (local) 7024733 7083814 83416 142588 CM091759.1 scf7180002754938 99.29 True CONTIG scf7180002754938 142837 correct 4179065 4218390 1 38482 CM091758.1 scf7180002754939 97.21 True fake: scaffold gap size wrong estimation (extensive) 4218395 4236670 46315 64547 CM091758.1 scf7180002754939 98.06 True fake: scaffold gap size wrong estimation (local) 4236879 4271695 64621 99800 CM091758.1 scf7180002754939 97.96 True fake: scaffold gap size wrong estimation (local) 4272802 4298920 100616 126493 CM091758.1 scf7180002754939 98.01 True fake: scaffold gap size wrong estimation (local) 4299264 4364930 128942 194605 CM091758.1 scf7180002754939 99.59 True relocation, scaffold gap is present, inconsistency = -12673 4365048 4411254 207396 253622 CM091758.1 scf7180002754939 99.81 True fake: scaffold gap size wrong estimation (local) 4411655 4422083 254023 264455 CM091758.1 scf7180002754939 99.89 True fake: scaffold gap size wrong estimation (local) 4423043 4510280 268731 355984 CM091758.1 scf7180002754939 99.85 True relocation, scaffold gap is present, inconsistency = -84602 4510323 4537068 440629 467380 CM091758.1 scf7180002754939 99.52 True fake: scaffold gap size wrong estimation (local) 4537167 4600253 467475 530557 CM091758.1 scf7180002754939 99.71 True fake: scaffold gap size wrong estimation (local) 4600354 4615897 530643 546055 CM091758.1 scf7180002754939 98.69 True fake: scaffold gap size wrong estimation (extensive) 4615892 4616561 554070 554745 CM091758.1 scf7180002754939 99.7 True fake: scaffold gap size wrong estimation (local) 4617573 4639191 555119 576474 CM091758.1 scf7180002754939 98.24 True fake: scaffold gap size wrong estimation (local) 4639198 4735558 578621 674721 CM091758.1 scf7180002754939 99.3 True local misassembly 4736077 4752211 675291 691319 CM091758.1 scf7180002754939 99.57 True relocation, scaffold gap is present, inconsistency = -57092 4722405 4723112 718605 719335 CM091758.1 scf7180002754939 99.67 True fake: scaffold gap size wrong estimation (local) 4752089 4800952 748280 797093 CM091758.1 scf7180002754939 99.68 True relocation, scaffold gap is present, inconsistency = -37461 4800946 4823469 834548 856209 CM091758.1 scf7180002754939 95.69 True fake: scaffold gap size wrong estimation (local) 4824039 4837771 856299 870107 CM091758.1 scf7180002754939 99.51 True fake: scaffold gap size wrong estimation (local) 4839413 4847065 871434 879097 CM091758.1 scf7180002754939 99.62 True fake: scaffold gap size wrong estimation (local) 4847150 4862540 885802 901187 CM091758.1 scf7180002754939 99.4 True indel: indel (> 5bp) 4862669 4892403 901286 930651 CM091758.1 scf7180002754939 98.05 True local misassembly 4892842 4909945 931332 948427 CM091758.1 scf7180002754939 99.77 True relocation, scaffold gap is present, inconsistency = -41169 4909957 4927200 989608 1006832 CM091758.1 scf7180002754939 99.29 True fake: not a misassembly (possible transposable element) 13850115 13853526 1010294 1006874 CM091754.1 scf7180002754939 99.24 True fake: not a misassembly (possible transposable element) 4929930 4930798 1016404 1017272 CM091758.1 scf7180002754939 97.58 True indel: indel (<= 5bp) 4930800 4932792 1017273 1019265 CM091758.1 scf7180002754939 99.75 True fake: scaffold gap size wrong estimation (local) 4932815 4933669 1019312 1020166 CM091758.1 scf7180002754939 99.88 True fake: scaffold gap size wrong estimation (local) 4934250 4935252 1024803 1025805 CM091758.1 scf7180002754939 99.5 True fake: scaffold gap size wrong estimation (local) 4936087 4937689 1027254 1028856 CM091758.1 scf7180002754939 99.94 True fake: not a misassembly (possible transposable element) 13839104 13840555 1030364 1028913 CM091754.1 scf7180002754939 99.38 True fake: not a misassembly (possible transposable element) 4938011 4941097 1031944 1035030 CM091758.1 scf7180002754939 99.84 True fake: scaffold gap size wrong estimation (local) 4941098 4941881 1039554 1040337 CM091758.1 scf7180002754939 99.74 True fake: scaffold gap size wrong estimation (local) 4942382 4943347 1040845 1041810 CM091758.1 scf7180002754939 99.9 True fake: scaffold gap size wrong estimation (local) 4943830 4945004 1042295 1043469 CM091758.1 scf7180002754939 99.91 True indel: indel (<= 5bp) 4945005 4946787 1043474 1045256 CM091758.1 scf7180002754939 98.65 True indel: indel (<= 5bp) 4946788 4948232 1045259 1046703 CM091758.1 scf7180002754939 99.58 True fake: scaffold gap size wrong estimation (local) 4949489 4950526 1047806 1048843 CM091758.1 scf7180002754939 99.61 True fake: scaffold gap size wrong estimation (local) 4950979 4951640 1049403 1050064 CM091758.1 scf7180002754939 99.4 True indel: indel (> 5bp) 4951662 4952572 1050065 1050975 CM091758.1 scf7180002754939 99.67 True fake: scaffold gap size wrong estimation (local) 4952734 4953693 1051158 1052117 CM091758.1 scf7180002754939 100.0 True fake: scaffold gap size wrong estimation (local) 4955180 4956987 1053124 1054931 CM091758.1 scf7180002754939 99.61 True local misassembly 4957518 4958735 1055463 1056680 CM091758.1 scf7180002754939 99.34 True indel: indel (<= 5bp) 4958736 4959836 1056682 1057782 CM091758.1 scf7180002754939 99.91 True fake: scaffold gap size wrong estimation (local) 4959814 4977627 1060801 1078663 CM091758.1 scf7180002754939 99.1 True fake: scaffold gap size wrong estimation (local) 4977635 4984352 1079869 1086695 CM091758.1 scf7180002754939 98.06 True fake: scaffold gap size wrong estimation (local) 4984383 5025468 1087694 1128809 CM091758.1 scf7180002754939 99.68 True fake: scaffold gap size wrong estimation (local) 5025610 5055303 1128903 1158631 CM091758.1 scf7180002754939 99.69 True relocation, scaffold gap is present, inconsistency = -13727 5055904 5085865 1172959 1202370 CM091758.1 scf7180002754939 97.5 True relocation, scaffold gap is present, inconsistency = -10058 5085874 5103628 1212437 1230205 CM091758.1 scf7180002754939 99.42 True fake: scaffold gap size wrong estimation (local) 5103877 5107508 1230616 1234247 CM091758.1 scf7180002754939 98.87 True local misassembly 5109297 5110275 1235048 1236026 CM091758.1 scf7180002754939 97.75 True fake: scaffold gap size wrong estimation (local) 5110407 5139227 1236154 1265209 CM091758.1 scf7180002754939 98.86 True fake: scaffold gap size wrong estimation (local) 5140589 5190997 1265965 1315853 CM091758.1 scf7180002754939 98.15 True fake: scaffold gap size wrong estimation (local) 5191061 5195239 1319690 1323922 CM091758.1 scf7180002754939 99.81 True CONTIG scf7180002754939 1323922 misassembled 1096583 1098506 297 2220 CM091754.1 scf7180002754940 99.32 True indel: indel (<= 5bp) 1098579 1099469 2295 3185 CM091754.1 scf7180002754940 99.55 True indel: indel (<= 5bp) 1099470 1101013 3187 4730 CM091754.1 scf7180002754940 99.42 True local misassembly 1101662 1102358 4731 5427 CM091754.1 scf7180002754940 99.43 True indel: indel (<= 5bp) 1102370 1104064 5440 7134 CM091754.1 scf7180002754940 99.23 True fake: scaffold gap size wrong estimation (local) 1104356 1110611 7427 13775 CM091754.1 scf7180002754940 97.0 True indel: indel (> 5bp) 1110717 1111534 13894 14711 CM091754.1 scf7180002754940 98.66 True fake: scaffold gap size wrong estimation (local) 1114114 1115484 16464 17834 CM091754.1 scf7180002754940 99.34 True fake: scaffold gap size wrong estimation (local) 1115945 1119236 19852 23140 CM091754.1 scf7180002754940 98.58 True fake: scaffold gap size wrong estimation (local) 1119534 1129561 23276 33328 CM091754.1 scf7180002754940 98.56 True fake: scaffold gap size wrong estimation (extensive) 1129517 1141717 41219 53466 CM091754.1 scf7180002754940 98.69 True fake: scaffold gap size wrong estimation (local) 1141847 1152865 53597 64646 CM091754.1 scf7180002754940 99.08 True fake: scaffold gap size wrong estimation (local) 1153216 1153873 69212 69869 CM091754.1 scf7180002754940 99.85 True relocation, scaffold gap is present, inconsistency = 109226 1264341 1269310 71111 76097 CM091754.1 scf7180002754940 98.72 True fake: scaffold gap size wrong estimation (local) 1269336 1294329 80536 105224 CM091754.1 scf7180002754940 97.51 True indel: indel (> 5bp) 1294458 1295775 105396 106716 CM091754.1 scf7180002754940 98.04 True fake: scaffold gap size wrong estimation (local) 1296069 1296844 107120 107899 CM091754.1 scf7180002754940 99.36 True fake: scaffold gap size wrong estimation (local) 1297308 1307133 107980 117813 CM091754.1 scf7180002754940 99.33 True relocation, scaffold gap is present, inconsistency = 16994 1338074 1339857 131760 133541 CM091754.1 scf7180002754940 99.05 True fake: scaffold gap size wrong estimation (local) 1341675 1349166 133562 141079 CM091754.1 scf7180002754940 99.0 True fake: scaffold gap size wrong estimation (local) 1350488 1351206 149014 149732 CM091754.1 scf7180002754940 99.72 True indel: indel (> 5bp) 1351207 1351811 149744 150348 CM091754.1 scf7180002754940 98.35 True indel: indel (> 5bp) 1352078 1352658 150622 151202 CM091754.1 scf7180002754940 98.97 True fake: scaffold gap size wrong estimation (local) 1352726 1355390 151280 153944 CM091754.1 scf7180002754940 99.1 True fake: scaffold gap size wrong estimation (local) 1356135 1361805 153965 159647 CM091754.1 scf7180002754940 98.82 True fake: scaffold gap size wrong estimation (local) 1361721 1363878 164799 166976 CM091754.1 scf7180002754940 98.47 True fake: scaffold gap size wrong estimation (local) 1364262 1374137 167428 177413 CM091754.1 scf7180002754940 97.07 True fake: scaffold gap size wrong estimation (local) 1374239 1396972 177830 200544 CM091754.1 scf7180002754940 98.68 True local misassembly 1397668 1399521 200545 202398 CM091754.1 scf7180002754940 99.24 True local misassembly 1399522 1400481 202546 203505 CM091754.1 scf7180002754940 98.75 True CONTIG scf7180002754940 203809 misassembled 13460794 13464352 3558 1 CM091756.1 scf7180002754941 99.69 True fake: scaffold gap size wrong estimation (local) 13435690 13460740 33210 8229 CM091756.1 scf7180002754941 99.4 True translocation, scaffold gap is present 18347322 18397527 93226 43123 CM091751.1 scf7180002754941 98.44 True relocation, scaffold gap is present, inconsistency = -83204 18425143 18428025 98609 95727 CM091751.1 scf7180002754941 99.62 True fake: scaffold gap size wrong estimation (local) 18423477 18424667 101690 100499 CM091751.1 scf7180002754941 99.58 True fake: scaffold gap size wrong estimation (local) 18414739 18423428 110979 102277 CM091751.1 scf7180002754941 99.25 True translocation, scaffold gap is present 13385182 13435811 161648 111009 CM091756.1 scf7180002754941 99.67 True translocation, scaffold gap is present 18397345 18413761 187857 171415 CM091751.1 scf7180002754941 98.86 True translocation, scaffold gap is present 13360156 13385075 213197 188277 CM091756.1 scf7180002754941 99.68 True relocation, scaffold gap is present, inconsistency = -25140 13318012 13360141 280260 238352 CM091756.1 scf7180002754941 99.32 True fake: scaffold gap size wrong estimation (extensive) 13171623 13318003 435604 289319 CM091756.1 scf7180002754941 99.03 True indel: indel (> 5bp) 13167856 13171557 439377 435691 CM091756.1 scf7180002754941 98.95 True local misassembly 13166189 13167403 441101 439886 CM091756.1 scf7180002754941 99.42 True indel: indel (> 5bp) 13154103 13166128 453200 441170 CM091756.1 scf7180002754941 99.6 True translocation, scaffold gap is present 10655874 10677125 487827 509070 CM091763.1 scf7180002754941 99.48 True translocation, scaffold gap is present 13146145 13153968 536933 529074 CM091756.1 scf7180002754941 98.26 True translocation, scaffold gap is present 10677248 10709300 537880 569952 CM091763.1 scf7180002754941 99.67 True indel: indel (<= 5bp) 10709352 10718402 570003 579051 CM091763.1 scf7180002754941 99.72 True relocation, scaffold gap is present, inconsistency = -40939 10718414 10791659 620002 692922 CM091763.1 scf7180002754941 99.0 True indel: indel (<= 5bp) 10791743 10802000 693003 703260 CM091763.1 scf7180002754941 99.58 True fake: scaffold gap size wrong estimation (local) 10802358 10812422 704977 715031 CM091763.1 scf7180002754941 98.89 True fake: scaffold gap size wrong estimation (local) 10812616 10814831 715382 717596 CM091763.1 scf7180002754941 99.68 True fake: scaffold gap size wrong estimation (local) 10815396 10836567 718584 739759 CM091763.1 scf7180002754941 99.56 True relocation, scaffold gap is present, inconsistency = -20190 10836861 10860750 760243 783421 CM091763.1 scf7180002754941 96.58 True fake: scaffold gap size wrong estimation (local) 10861643 10910387 783586 831478 CM091763.1 scf7180002754941 97.83 True fake: scaffold gap size wrong estimation (local) 10910470 10975007 831563 896155 CM091763.1 scf7180002754941 99.55 True relocation, scaffold gap is present, inconsistency = -22189 10956919 10957606 900256 900969 CM091763.1 scf7180002754941 98.92 True fake: scaffold gap size wrong estimation (local) 10975178 10983456 915676 923953 CM091763.1 scf7180002754941 99.9 True fake: scaffold gap size wrong estimation (local) 10983510 11043110 930753 989273 CM091763.1 scf7180002754941 97.51 True fake: scaffold gap size wrong estimation (local) 11044108 11049259 989439 994614 CM091763.1 scf7180002754941 99.31 True fake: scaffold gap size wrong estimation (local) 11050694 11056965 995003 1001271 CM091763.1 scf7180002754941 99.63 True fake: scaffold gap size wrong estimation (local) 11057792 11065202 1001292 1012201 CM091763.1 scf7180002754941 97.33 True fake: scaffold gap size wrong estimation (local) 11066104 11068428 1012222 1014545 CM091763.1 scf7180002754941 98.93 True fake: scaffold gap size wrong estimation (local) 11069132 11074126 1015377 1020369 CM091763.1 scf7180002754941 99.78 True fake: scaffold gap size wrong estimation (local) 11074224 11094915 1020487 1040902 CM091763.1 scf7180002754941 98.03 True fake: scaffold gap size wrong estimation (local) 11094924 11187039 1044370 1136681 CM091763.1 scf7180002754941 99.48 True fake: scaffold gap size wrong estimation (local) 11187161 11211696 1136829 1161772 CM091763.1 scf7180002754941 97.86 True relocation, scaffold gap is present, inconsistency = -13634 11211714 11239951 1175424 1202891 CM091763.1 scf7180002754941 96.87 True fake: scaffold gap size wrong estimation (extensive) 11240030 11248236 1210770 1218986 CM091763.1 scf7180002754941 99.62 True fake: scaffold gap size wrong estimation (local) 11248245 11327670 1220787 1300256 CM091763.1 scf7180002754941 99.42 True fake: scaffold gap size wrong estimation (local) 11327906 11349599 1306241 1327971 CM091763.1 scf7180002754941 99.45 True relocation, scaffold gap is present, inconsistency = -21558 11349493 11367214 1349423 1366808 CM091763.1 scf7180002754941 96.9 True fake: scaffold gap size wrong estimation (local) 11368191 11385204 1368984 1385411 CM091763.1 scf7180002754941 95.62 True indel: stretch of mismatches 11385205 11386039 1385412 1386246 CM091763.1 scf7180002754941 99.85 True fake: scaffold gap size wrong estimation (local) 11386152 11403817 1388900 1406259 CM091763.1 scf7180002754941 97.7 True fake: scaffold gap size wrong estimation (local) 11404267 11420854 1406351 1422810 CM091763.1 scf7180002754941 98.2 True fake: scaffold gap size wrong estimation (local) 11420971 11424669 1423436 1427134 CM091763.1 scf7180002754941 98.82 True fake: scaffold gap size wrong estimation (local) 11426394 11427665 1428104 1429375 CM091763.1 scf7180002754941 98.11 True fake: scaffold gap size wrong estimation (local) 11427890 11440880 1429557 1442250 CM091763.1 scf7180002754941 95.98 True fake: scaffold gap size wrong estimation (local) 11441276 11451239 1442805 1452769 CM091763.1 scf7180002754941 99.25 True CONTIG scf7180002754941 1452769 misassembled 8591514 8642698 1 50749 CM091761.1 scf7180002754942 98.45 True relocation, scaffold gap is present, inconsistency = -29693 8642702 8694716 80446 132487 CM091761.1 scf7180002754942 99.54 True relocation, scaffold gap is present, inconsistency = -32111 8694833 8775095 164715 245059 CM091761.1 scf7180002754942 99.56 True relocation, scaffold gap is present, inconsistency = -45121 8775313 8787256 290398 302348 CM091761.1 scf7180002754942 99.76 True relocation, scaffold gap is present, inconsistency = -11589 8787303 8862191 313984 388898 CM091761.1 scf7180002754942 99.51 True fake: scaffold gap size wrong estimation (local) 8862335 8864550 388951 391171 CM091761.1 scf7180002754942 98.21 True fake: scaffold gap size wrong estimation (local) 8864656 9014671 392695 542923 CM091761.1 scf7180002754942 99.3 True fake: scaffold gap size wrong estimation (local) 9015243 9034295 543479 562732 CM091761.1 scf7180002754942 98.8 True fake: scaffold gap size wrong estimation (local) 9034319 9090798 566633 623479 CM091761.1 scf7180002754942 98.44 True fake: scaffold gap size wrong estimation (local) 9090821 9132648 624925 666729 CM091761.1 scf7180002754942 99.47 True relocation, scaffold gap is present, inconsistency = -12565 9132988 9148154 679634 694828 CM091761.1 scf7180002754942 99.51 True relocation, scaffold gap is present, inconsistency = -15183 9148085 9164843 709942 726729 CM091761.1 scf7180002754942 99.13 True fake: scaffold gap size wrong estimation (local) 9164862 9169591 729647 734382 CM091761.1 scf7180002754942 99.58 True fake: scaffold gap size wrong estimation (local) 9169585 9198183 738775 767414 CM091761.1 scf7180002754942 99.35 True indel: indel (> 5bp) 9198514 9208619 767763 777889 CM091761.1 scf7180002754942 99.0 True CONTIG scf7180002754942 800910 misassembled 1122976 1139103 1 16151 CM091756.1 scf7180002754943 99.39 True fake: scaffold gap size wrong estimation (local) 1139088 1140658 19974 21544 CM091756.1 scf7180002754943 99.75 True local misassembly 1141309 1142004 22197 22892 CM091756.1 scf7180002754943 96.98 True indel: indel (<= 5bp) 1142005 1143928 22894 24817 CM091756.1 scf7180002754943 99.79 True indel: indel (<= 5bp) 1143929 1145109 24819 25999 CM091756.1 scf7180002754943 99.58 True indel: indel (<= 5bp) 1145110 1145728 26001 26619 CM091756.1 scf7180002754943 100.0 True indel: indel (<= 5bp) 1146023 1146937 26918 27832 CM091756.1 scf7180002754943 99.45 True indel: stretch of mismatches 1147269 1147986 28164 28881 CM091756.1 scf7180002754943 99.3 True indel: stretch of mismatches 1148277 1150726 29172 31621 CM091756.1 scf7180002754943 98.73 True local misassembly 1151432 1152428 31855 32851 CM091756.1 scf7180002754943 97.29 True indel: indel (> 5bp) 1152437 1152981 32852 33396 CM091756.1 scf7180002754943 95.78 True indel: indel (<= 5bp) 1153419 1154472 33836 34889 CM091756.1 scf7180002754943 99.53 True local misassembly 1155479 1157214 35890 37625 CM091756.1 scf7180002754943 99.65 True local misassembly 1157807 1160853 37626 40672 CM091756.1 scf7180002754943 99.18 True fake: scaffold gap size wrong estimation (local) 1161846 1167944 44139 50262 CM091756.1 scf7180002754943 99.15 True fake: scaffold gap size wrong estimation (local) 1168314 1182294 51996 66061 CM091756.1 scf7180002754943 99.51 True fake: scaffold gap size wrong estimation (local) 1182668 1201960 66206 85499 CM091756.1 scf7180002754943 99.39 True indel: indel (> 5bp) 1202137 1217286 85594 100790 CM091756.1 scf7180002754943 99.36 True fake: scaffold gap size wrong estimation (local) 1218249 1305052 100933 187746 CM091756.1 scf7180002754943 99.16 True fake: scaffold gap size wrong estimation (local) 1305373 1305890 192025 192542 CM091756.1 scf7180002754943 99.61 True indel: indel (<= 5bp) 1305891 1306952 192544 193605 CM091756.1 scf7180002754943 99.91 True indel: indel (<= 5bp) 1307011 1307740 193666 194395 CM091756.1 scf7180002754943 99.45 True indel: indel (<= 5bp) 1307742 1308794 194396 195448 CM091756.1 scf7180002754943 99.15 True fake: scaffold gap size wrong estimation (local) 1309144 1310095 195812 196763 CM091756.1 scf7180002754943 99.16 True indel: indel (<= 5bp) 1310100 1311958 196769 198627 CM091756.1 scf7180002754943 99.95 True fake: scaffold gap size wrong estimation (local) 1312859 1313699 201347 202187 CM091756.1 scf7180002754943 99.76 True fake: not a misassembly (possible transposable element) 2804494 2806020 203735 202208 CM091763.1 scf7180002754943 98.69 True fake: not a misassembly (possible transposable element) 1314868 1317701 204580 207412 CM091756.1 scf7180002754943 99.51 True fake: not a misassembly (possible transposable element) 2810957 2812661 210343 208645 CM091763.1 scf7180002754943 99.24 True fake: not a misassembly (possible transposable element) 1317897 1320893 210364 213362 CM091756.1 scf7180002754943 99.17 True fake: not a misassembly (possible transposable element) 2797674 2800751 216500 213402 CM091763.1 scf7180002754943 96.9 True fake: not a misassembly (possible transposable element) 1321332 1323078 216501 218251 CM091756.1 scf7180002754943 99.39 True translocation, scaffold gap is present 2792745 2797180 225582 221172 CM091763.1 scf7180002754943 98.09 True translocation, scaffold gap is present 1323135 1330415 226761 234048 CM091756.1 scf7180002754943 99.41 True translocation, scaffold gap is present 2787767 2792777 241688 236688 CM091763.1 scf7180002754943 98.65 True translocation, scaffold gap is present 1330506 1332370 243231 245089 CM091756.1 scf7180002754943 98.31 True fake: scaffold gap size wrong estimation (local) 1332488 1356938 245185 269628 CM091756.1 scf7180002754943 98.77 True fake: scaffold gap size wrong estimation (local) 1357207 1359629 269730 272152 CM091756.1 scf7180002754943 99.71 True indel: indel (<= 5bp) 1359634 1360479 272153 272998 CM091756.1 scf7180002754943 98.94 True local misassembly 1360867 1362096 272999 274228 CM091756.1 scf7180002754943 99.67 True fake: scaffold gap size wrong estimation (local) 1362977 1396777 276224 310069 CM091756.1 scf7180002754943 99.53 True indel: indel (> 5bp) 1396810 1440958 310113 353969 CM091756.1 scf7180002754943 98.25 True fake: scaffold gap size wrong estimation (local) 1440968 1475630 355850 390585 CM091756.1 scf7180002754943 99.46 True fake: scaffold gap size wrong estimation (local) 1475742 1476436 390698 391395 CM091756.1 scf7180002754943 99.14 True translocation, scaffold gap is present 508483 509257 392190 391416 CM091758.1 scf7180002754943 99.74 True fake: scaffold gap size wrong estimation (local) 359390 508323 541622 392567 CM091758.1 scf7180002754943 99.35 True fake: scaffold gap size wrong estimation (local) 333354 359156 568117 542322 CM091758.1 scf7180002754943 99.25 True indel: indel (> 5bp) 315339 333262 586098 568162 CM091758.1 scf7180002754943 99.46 True fake: scaffold gap size wrong estimation (local) 311389 314951 589807 586288 CM091758.1 scf7180002754943 98.6 True fake: scaffold gap size wrong estimation (local) 266090 310433 634482 590010 CM091758.1 scf7180002754943 99.36 True fake: scaffold gap size wrong estimation (local) 165193 265970 734604 634588 CM091758.1 scf7180002754943 98.7 True CONTIG scf7180002754943 734604 misassembled 1068791 1070513 1 1723 CM091754.1 scf7180002754944 98.61 True indel: stretch of mismatches 1070590 1072711 1800 3921 CM091754.1 scf7180002754944 99.72 True local misassembly 1073529 1074547 4738 5756 CM091754.1 scf7180002754944 99.61 True indel: indel (> 5bp) 1074586 1075241 5767 6422 CM091754.1 scf7180002754944 100.0 True indel: indel (<= 5bp) 1075345 1076275 6528 7458 CM091754.1 scf7180002754944 99.79 True translocation, scaffold gap is present 15657666 15660273 9837 12444 CM091757.1 scf7180002754944 100.0 True fake: not a misassembly (possible transposable element) 9009875 9011512 14790 16427 CM091767.1 scf7180002754944 100.0 True fake: not a misassembly (possible transposable element) 15662265 15664187 16448 18372 CM091757.1 scf7180002754944 99.84 True local misassembly 15660348 15661047 18393 19092 CM091757.1 scf7180002754944 100.0 True translocation, scaffold gap is present 9012323 9014651 19455 21783 CM091767.1 scf7180002754944 99.87 True fake: scaffold gap size wrong estimation (local) 9015576 9016103 23210 23737 CM091767.1 scf7180002754944 100.0 True indel: indel (> 5bp) 9016190 9017370 23841 25021 CM091767.1 scf7180002754944 100.0 True fake: scaffold gap size wrong estimation (local) 9017371 9020721 26675 30025 CM091767.1 scf7180002754944 99.79 True indel: indel (> 5bp) 9021131 9023184 30443 32496 CM091767.1 scf7180002754944 98.73 True indel: indel (> 5bp) 9023238 9023807 32595 33164 CM091767.1 scf7180002754944 95.79 True fake: not a misassembly (possible transposable element) 5636409 5637346 35925 34994 CM091768.1 scf7180002754944 98.83 True fake: not a misassembly (possible transposable element) 9024394 9026600 38879 41085 CM091767.1 scf7180002754944 98.73 True indel: indel (<= 5bp) 9026604 9027689 41086 42171 CM091767.1 scf7180002754944 100.0 True CONTIG scf7180002754944 42587 misassembled 1959750 2025788 48 65616 CM091752.1 scf7180002754945 98.52 True indel: indel (> 5bp) 2025972 2029300 65807 69135 CM091752.1 scf7180002754945 99.7 True fake: scaffold gap size wrong estimation (local) 2029312 2063768 71608 105846 CM091752.1 scf7180002754945 98.43 True local misassembly 2064584 2067101 106845 109366 CM091752.1 scf7180002754945 99.76 True local misassembly 2067883 2128814 109430 168505 CM091752.1 scf7180002754945 96.22 True fake: scaffold gap size wrong estimation (local) 2129328 2158658 173746 202753 CM091752.1 scf7180002754945 97.96 True fake: scaffold gap size wrong estimation (extensive) 2159498 2170221 210872 221196 CM091752.1 scf7180002754945 95.09 True fake: scaffold gap size wrong estimation (local) 2170187 2176011 225510 231320 CM091752.1 scf7180002754945 98.3 True fake: scaffold gap size wrong estimation (local) 2179538 2185451 231341 237253 CM091752.1 scf7180002754945 99.48 True relocation, scaffold gap is present, inconsistency = -13515 2176060 2179260 241377 244577 CM091752.1 scf7180002754945 99.66 True fake: scaffold gap size wrong estimation (extensive) 2186589 2206428 244598 264436 CM091752.1 scf7180002754945 99.36 True relocation, scaffold gap is present, inconsistency = -20999 2185450 2186573 264457 265582 CM091752.1 scf7180002754945 99.47 True fake: scaffold gap size wrong estimation (local) 2206442 2217765 284172 295499 CM091752.1 scf7180002754945 99.38 True indel: indel (<= 5bp) 2217829 2224400 295568 302130 CM091752.1 scf7180002754945 98.89 True fake: scaffold gap size wrong estimation (local) 2224381 2316389 302151 394118 CM091752.1 scf7180002754945 99.08 True fake: scaffold gap size wrong estimation (local) 2316505 2331263 394205 408294 CM091752.1 scf7180002754945 95.01 True fake: scaffold gap size wrong estimation (local) 2331406 2337000 408436 414055 CM091752.1 scf7180002754945 99.53 True fake: scaffold gap size wrong estimation (local) 2339380 2408832 414538 483010 CM091752.1 scf7180002754945 97.6 True fake: scaffold gap size wrong estimation (local) 2408829 2525197 487394 603892 CM091752.1 scf7180002754945 99.41 True fake: scaffold gap size wrong estimation (local) 2533818 2536123 612576 614886 CM091752.1 scf7180002754945 99.26 True fake: scaffold gap size wrong estimation (local) 2536492 2569891 615492 648923 CM091752.1 scf7180002754945 99.7 True relocation, scaffold gap is present, inconsistency = -30105 2569932 2604119 679069 713281 CM091752.1 scf7180002754945 99.66 True fake: scaffold gap size wrong estimation (local) 2604778 2703403 713486 811863 CM091752.1 scf7180002754945 99.19 True fake: scaffold gap size wrong estimation (extensive) 2703477 2741950 819231 857173 CM091752.1 scf7180002754945 98.01 True fake: scaffold gap size wrong estimation (local) 2742359 2759897 862755 880490 CM091752.1 scf7180002754945 99.66 True fake: scaffold gap size wrong estimation (local) 2760034 2791769 880610 912334 CM091752.1 scf7180002754945 99.61 True fake: scaffold gap size wrong estimation (local) 2792002 2823527 915347 946904 CM091752.1 scf7180002754945 99.68 True fake: scaffold gap size wrong estimation (local) 2823616 2848387 947225 971215 CM091752.1 scf7180002754945 96.42 True CONTIG scf7180002754945 971215 misassembled 63512 65279 1 1768 CM091752.1 scf7180002754946 99.43 True indel: indel (<= 5bp) 65283 68900 1769 5386 CM091752.1 scf7180002754946 99.86 True indel: indel (<= 5bp) 68901 69760 5388 6247 CM091752.1 scf7180002754946 99.88 True fake: scaffold gap size wrong estimation (local) 71259 74717 6529 9987 CM091752.1 scf7180002754946 99.42 True fake: scaffold gap size wrong estimation (local) 73431 73929 12155 12654 CM091752.1 scf7180002754946 100.0 True fake: scaffold gap size wrong estimation (local) 74780 77434 13504 16170 CM091752.1 scf7180002754946 95.54 True fake: scaffold gap size wrong estimation (local) 77597 78958 16321 17682 CM091752.1 scf7180002754946 99.27 True fake: scaffold gap size wrong estimation (local) 80003 81343 18393 19733 CM091752.1 scf7180002754946 99.55 True indel: indel (> 5bp) 81350 82166 19734 20550 CM091752.1 scf7180002754946 100.0 True CONTIG scf7180002754946 21345 correct 6690100 6691038 18 956 CM091755.1 scf7180002754947 99.47 True indel: indel (> 5bp) 6691120 6707565 997 17153 CM091755.1 scf7180002754947 97.83 True fake: scaffold gap size wrong estimation (local) 6707540 6799170 24092 115772 CM091755.1 scf7180002754947 99.67 True relocation, scaffold gap is present, inconsistency = -83900 6799330 6822741 199832 223251 CM091755.1 scf7180002754947 99.22 True fake: scaffold gap size wrong estimation (local) 6823310 6827915 230446 235051 CM091755.1 scf7180002754947 99.2 True local misassembly 6828634 6830865 235780 238011 CM091755.1 scf7180002754947 99.46 True fake: scaffold gap size wrong estimation (extensive) 6831182 6844288 246295 259407 CM091755.1 scf7180002754947 99.45 True fake: scaffold gap size wrong estimation (local) 6847911 6851540 262905 266537 CM091755.1 scf7180002754947 97.87 True fake: scaffold gap size wrong estimation (local) 6851663 6884535 266660 299225 CM091755.1 scf7180002754947 98.18 True relocation, scaffold gap is present, inconsistency = -14723 6884460 6969092 313873 397599 CM091755.1 scf7180002754947 98.11 True relocation, scaffold gap is present, inconsistency = -10799 6969107 7033704 408413 472546 CM091755.1 scf7180002754947 98.58 True local misassembly 7034570 7039417 472547 477384 CM091755.1 scf7180002754947 99.18 True indel: indel (> 5bp) 7039592 7052235 477568 490208 CM091755.1 scf7180002754947 99.37 True relocation, scaffold gap is present, inconsistency = -19417 7052238 7116252 509628 573662 CM091755.1 scf7180002754947 99.29 True indel: indel (<= 5bp) 7116293 7125659 573706 583098 CM091755.1 scf7180002754947 99.06 True relocation, scaffold gap is present, inconsistency = -58018 7125830 7166315 641287 681760 CM091755.1 scf7180002754947 99.22 True relocation, scaffold gap is present, inconsistency = -19162 7166327 7187275 700934 721920 CM091755.1 scf7180002754947 99.33 True relocation, scaffold gap is present, inconsistency = -20934 7187288 7242994 742867 798615 CM091755.1 scf7180002754947 99.43 True fake: scaffold gap size wrong estimation (local) 7243332 7277051 799196 832939 CM091755.1 scf7180002754947 99.74 True fake: scaffold gap size wrong estimation (local) 7277202 7280185 833071 836066 CM091755.1 scf7180002754947 99.3 True fake: scaffold gap size wrong estimation (local) 7280285 7412599 836165 968478 CM091755.1 scf7180002754947 99.1 True fake: scaffold gap size wrong estimation (local) 7412676 7444978 968852 1001208 CM091755.1 scf7180002754947 99.19 True indel: indel (> 5bp) 7445007 7447167 1001246 1003402 CM091755.1 scf7180002754947 98.98 True relocation, scaffold gap is present, inconsistency = -33887 7447199 7495731 1037321 1085892 CM091755.1 scf7180002754947 98.97 True fake: scaffold gap size wrong estimation (local) 7497645 7507371 1088039 1097774 CM091755.1 scf7180002754947 99.27 True fake: scaffold gap size wrong estimation (local) 7507616 7510428 1097795 1100743 CM091755.1 scf7180002754947 95.06 True indel: indel (<= 5bp) 7510470 7532056 1100788 1122387 CM091755.1 scf7180002754947 99.04 True fake: scaffold gap size wrong estimation (local) 7532067 7533530 1127181 1128645 CM091755.1 scf7180002754947 99.86 True indel: indel (> 5bp) 7533579 7537992 1128703 1133119 CM091755.1 scf7180002754947 99.32 True CONTIG scf7180002754947 1138684 misassembled 16478 33439 2477 19969 CM091754.1 scf7180002754948 97.01 True fake: scaffold gap size wrong estimation (local) 33741 35554 20423 22236 CM091754.1 scf7180002754948 99.94 True local misassembly 35860 37456 22237 23833 CM091754.1 scf7180002754948 98.75 True translocation, scaffold gap is present 3202502 3220420 24648 42568 CM091762.1 scf7180002754948 99.45 True fake: not a misassembly (possible transposable element) 38281 40226 42589 44534 CM091754.1 scf7180002754948 99.79 True fake: not a misassembly (possible transposable element) 3220806 3277054 44814 102555 CM091762.1 scf7180002754948 96.17 True fake: scaffold gap size wrong estimation (local) 3277692 3303761 103449 129358 CM091762.1 scf7180002754948 97.5 True fake: scaffold gap size wrong estimation (local) 3303907 3444152 129506 269485 CM091762.1 scf7180002754948 98.82 True fake: scaffold gap size wrong estimation (local) 3446379 3461324 277991 292888 CM091762.1 scf7180002754948 98.99 True fake: scaffold gap size wrong estimation (local) 3462019 3511250 293128 341835 CM091762.1 scf7180002754948 98.05 True fake: scaffold gap size wrong estimation (local) 3512090 3520111 342063 350079 CM091762.1 scf7180002754948 98.98 True fake: scaffold gap size wrong estimation (extensive) 3520117 3535775 357917 373617 CM091762.1 scf7180002754948 98.97 True relocation, scaffold gap is present, inconsistency = -11538 3535713 3591824 385093 441286 CM091762.1 scf7180002754948 99.36 True relocation, scaffold gap is present, inconsistency = -53910 3592019 3592647 495391 496013 CM091762.1 scf7180002754948 98.25 True fake: scaffold gap size wrong estimation (local) 3592896 3594661 496262 498027 CM091762.1 scf7180002754948 99.55 True CONTIG scf7180002754948 498038 misassembled 5544428 5586652 42217 1 CM091765.1 scf7180002754949 99.36 True fake: scaffold gap size wrong estimation (local) 5518655 5544428 73410 47640 CM091765.1 scf7180002754949 99.48 True relocation, scaffold gap is present, inconsistency = -14282 5496910 5518289 109394 88058 CM091765.1 scf7180002754949 99.26 True relocation, scaffold gap is present, inconsistency = -20619 5472386 5496928 154378 129995 CM091765.1 scf7180002754949 98.67 True relocation, scaffold gap is present, inconsistency = -14667 5409160 5472660 232392 168771 CM091765.1 scf7180002754949 99.29 True fake: scaffold gap size wrong estimation (local) 5407993 5408626 233897 233264 CM091765.1 scf7180002754949 99.84 True fake: scaffold gap size wrong estimation (local) 5406152 5407108 235240 234284 CM091765.1 scf7180002754949 99.27 True indel: indel (<= 5bp) 5403918 5406151 237476 235243 CM091765.1 scf7180002754949 99.91 True indel: indel (<= 5bp) 5403191 5403917 238204 237478 CM091765.1 scf7180002754949 99.72 True local misassembly 5401482 5402495 239911 238898 CM091765.1 scf7180002754949 99.31 True indel: stretch of mismatches 5399792 5401279 241601 240114 CM091765.1 scf7180002754949 99.73 True indel: indel (> 5bp) 5361167 5399623 280324 241776 CM091765.1 scf7180002754949 99.25 True fake: scaffold gap size wrong estimation (local) 5353912 5360221 291890 285573 CM091765.1 scf7180002754949 99.56 True fake: scaffold gap size wrong estimation (local) 5347468 5353303 303413 297591 CM091765.1 scf7180002754949 99.01 True local misassembly 5346271 5346883 304435 303823 CM091765.1 scf7180002754949 99.84 True local misassembly 5344944 5345598 305770 305116 CM091765.1 scf7180002754949 99.85 True indel: indel (<= 5bp) 5343687 5344593 307030 306124 CM091765.1 scf7180002754949 99.23 True indel: indel (<= 5bp) 5342986 5343675 307729 307040 CM091765.1 scf7180002754949 99.57 True indel: indel (<= 5bp) 5341542 5342985 309174 307731 CM091765.1 scf7180002754949 99.1 True local misassembly 5339743 5340659 310966 310050 CM091765.1 scf7180002754949 99.56 True indel: indel (<= 5bp) 5339228 5339742 311482 310968 CM091765.1 scf7180002754949 99.61 True local misassembly 5336892 5337464 313760 313188 CM091765.1 scf7180002754949 99.83 True local misassembly 5332386 5335601 318272 315057 CM091765.1 scf7180002754949 99.69 True indel: indel (> 5bp) 5331667 5332385 319001 318283 CM091765.1 scf7180002754949 99.72 True local misassembly 5328391 5330649 321278 319020 CM091765.1 scf7180002754949 99.78 True indel: indel (<= 5bp) 5326411 5327941 323256 321726 CM091765.1 scf7180002754949 99.22 True indel: indel (> 5bp) 5325461 5325988 324187 323660 CM091765.1 scf7180002754949 99.81 True relocation, scaffold gap is present, inconsistency = -19974 5315823 5325426 353744 344196 CM091765.1 scf7180002754949 97.78 True fake: scaffold gap size wrong estimation (local) 5295816 5315540 376607 356881 CM091765.1 scf7180002754949 99.08 True indel: indel (<= 5bp) 5281015 5295772 391393 376653 CM091765.1 scf7180002754949 99.35 True fake: scaffold gap size wrong estimation (local) 4884417 5280570 788096 391555 CM091765.1 scf7180002754949 99.59 True relocation, scaffold gap is present, inconsistency = -216633 4873279 4884147 1015872 1004999 CM091765.1 scf7180002754949 99.2 True relocation, scaffold gap is present, inconsistency = -10457 4867058 4873147 1032540 1026461 CM091765.1 scf7180002754949 98.9 True fake: scaffold gap size wrong estimation (local) 4748214 4866890 1151552 1032689 CM091765.1 scf7180002754949 99.36 True relocation, scaffold gap is present, inconsistency = -19144 4743679 4748007 1175226 1170903 CM091765.1 scf7180002754949 99.54 True fake: scaffold gap size wrong estimation (local) 4709927 4743599 1212316 1179031 CM091765.1 scf7180002754949 98.35 True fake: scaffold gap size wrong estimation (local) 4685852 4709883 1239153 1215254 CM091765.1 scf7180002754949 98.72 True fake: scaffold gap size wrong estimation (local) 4666218 4685745 1259590 1239881 CM091765.1 scf7180002754949 98.17 True fake: scaffold gap size wrong estimation (local) 4657133 4666094 1268651 1259718 CM091765.1 scf7180002754949 99.14 True indel: indel (> 5bp) 4632587 4656937 1293147 1268897 CM091765.1 scf7180002754949 98.94 True relocation, scaffold gap is present, inconsistency = -16512 4608734 4632527 1333497 1309719 CM091765.1 scf7180002754949 99.5 True fake: scaffold gap size wrong estimation (local) 4605462 4608558 1336772 1333676 CM091765.1 scf7180002754949 99.77 True indel: indel (<= 5bp) 4604269 4605461 1337966 1336774 CM091765.1 scf7180002754949 100.0 True indel: indel (> 5bp) 4602839 4604167 1339375 1338047 CM091765.1 scf7180002754949 99.7 True indel: stretch of mismatches 4601798 4602645 1340416 1339569 CM091765.1 scf7180002754949 99.76 True indel: indel (<= 5bp) 4600324 4601796 1341889 1340417 CM091765.1 scf7180002754949 100.0 True indel: indel (<= 5bp) 4597699 4600323 1344515 1341891 CM091765.1 scf7180002754949 99.62 True indel: indel (<= 5bp) 4594673 4597698 1347542 1344517 CM091765.1 scf7180002754949 99.9 True indel: indel (<= 5bp) 4593056 4594672 1349160 1347544 CM091765.1 scf7180002754949 99.88 True indel: indel (<= 5bp) 4592307 4593054 1349908 1349161 CM091765.1 scf7180002754949 99.73 True indel: indel (<= 5bp) 4591675 4592306 1350541 1349910 CM091765.1 scf7180002754949 98.58 True fake: scaffold gap size wrong estimation (local) 4586166 4591987 1358462 1352730 CM091765.1 scf7180002754949 96.19 True indel: indel (> 5bp) 4583016 4586092 1361591 1358514 CM091765.1 scf7180002754949 99.45 True CONTIG scf7180002754949 1367858 misassembled 8052485 8054591 537 2643 CM091767.1 scf7180002754950 99.67 True fake: scaffold gap size wrong estimation (local) 8055036 8058949 3144 7057 CM091767.1 scf7180002754950 99.95 True fake: scaffold gap size wrong estimation (local) 8059118 8061913 7338 10133 CM091767.1 scf7180002754950 99.71 True fake: scaffold gap size wrong estimation (local) 8061698 8062559 12724 13587 CM091767.1 scf7180002754950 95.18 True fake: scaffold gap size wrong estimation (local) 8063000 8065401 16049 18448 CM091767.1 scf7180002754950 99.58 True fake: scaffold gap size wrong estimation (local) 8066643 8068743 19171 21271 CM091767.1 scf7180002754950 99.9 True fake: scaffold gap size wrong estimation (local) 8069027 8072479 21554 25006 CM091767.1 scf7180002754950 99.94 True fake: scaffold gap size wrong estimation (extensive) 8080427 8081663 25027 26263 CM091767.1 scf7180002754950 99.85 True translocation 14121826 14131612 36057 26264 CM091757.1 scf7180002754950 99.67 True translocation, scaffold gap is present 8072936 8079469 36080 42615 CM091767.1 scf7180002754950 99.92 True translocation, scaffold gap is present 14033721 14121857 147995 52842 CM091757.1 scf7180002754950 99.17 True fake: scaffold gap size wrong estimation (local) 14032227 14033762 150331 148796 CM091757.1 scf7180002754950 99.87 True indel: indel (<= 5bp) 14031165 14032226 151396 150335 CM091757.1 scf7180002754950 100.0 True indel: indel (<= 5bp) 14029064 14031164 153498 151398 CM091757.1 scf7180002754950 98.91 True fake: scaffold gap size wrong estimation (local) 14027698 14028655 154659 153702 CM091757.1 scf7180002754950 99.9 True indel: indel (<= 5bp) 14024200 14027697 158160 154663 CM091757.1 scf7180002754950 99.23 True fake: scaffold gap size wrong estimation (local) 14002255 14023233 179951 158935 CM091757.1 scf7180002754950 99.55 True CONTIG scf7180002754950 179951 misassembled 192406 194974 1 2569 CM091764.1 scf7180002754951 99.92 True fake: not a misassembly (possible transposable element) 8665610 8666395 2570 3355 CM091767.1 scf7180002754951 99.89 True fake: not a misassembly (possible transposable element) 195471 213416 3661 21610 CM091764.1 scf7180002754951 99.81 True relocation, scaffold gap is present, inconsistency = -18348 213417 220150 39959 46736 CM091764.1 scf7180002754951 99.25 True translocation, scaffold gap is present 13772902 13775318 55521 53114 CM091758.1 scf7180002754951 97.81 True local misassembly 13773013 13774522 58573 57050 CM091758.1 scf7180002754951 96.89 True CONTIG scf7180002754951 58573 misassembled 9567498 9693184 125778 1 CM091753.1 scf7180002754952 99.54 True fake: scaffold gap size wrong estimation (local) 9554159 9567325 145819 132656 CM091753.1 scf7180002754952 99.54 True indel: indel (> 5bp) 9493410 9554119 206570 145880 CM091753.1 scf7180002754952 99.45 True relocation, scaffold gap is present, inconsistency = -54124 9477042 9493082 277047 261022 CM091753.1 scf7180002754952 99.58 True relocation, scaffold gap is present, inconsistency = -16078 9410989 9476937 359210 293230 CM091753.1 scf7180002754952 99.57 True fake: scaffold gap size wrong estimation (extensive) 9385384 9410705 391873 366557 CM091753.1 scf7180002754952 99.58 True relocation, scaffold gap is present, inconsistency = -14322 8909536 9385382 882045 406197 CM091753.1 scf7180002754952 99.37 True fake: scaffold gap size wrong estimation (local) 8858350 8909321 933157 882199 CM091753.1 scf7180002754952 99.5 True relocation, scaffold gap is present, inconsistency = -38432 8849372 8857909 980563 972030 CM091753.1 scf7180002754952 99.68 True local misassembly 8842083 8844106 982592 980569 CM091753.1 scf7180002754952 99.7 True indel: indel (<= 5bp) 8837469 8842082 987207 982594 CM091753.1 scf7180002754952 99.63 True local misassembly 8831681 8832468 988021 987234 CM091753.1 scf7180002754952 99.87 True indel: indel (<= 5bp) 8830749 8831667 988954 988036 CM091753.1 scf7180002754952 99.56 True indel: indel (<= 5bp) 8830032 8830748 989672 988956 CM091753.1 scf7180002754952 99.86 True indel: indel (<= 5bp) 8828883 8829770 990826 989939 CM091753.1 scf7180002754952 100.0 True indel: indel (<= 5bp) 8827363 8828529 992347 991181 CM091753.1 scf7180002754952 99.57 True indel: indel (<= 5bp) 8823926 8827361 995783 992348 CM091753.1 scf7180002754952 99.56 True indel: indel (<= 5bp) 8822666 8823622 997044 996088 CM091753.1 scf7180002754952 99.9 True indel: indel (<= 5bp) 8818426 8822665 1001285 997046 CM091753.1 scf7180002754952 99.76 True indel: indel (<= 5bp) 8815444 8818424 1004266 1001286 CM091753.1 scf7180002754952 99.93 True indel: indel (<= 5bp) 8814434 8815439 1005272 1004267 CM091753.1 scf7180002754952 99.3 True indel: indel (<= 5bp) 8813075 8814429 1006635 1005281 CM091753.1 scf7180002754952 99.48 True indel: indel (<= 5bp) 8812302 8813074 1007409 1006637 CM091753.1 scf7180002754952 100.0 True indel: indel (> 5bp) 8808858 8812239 1010806 1007425 CM091753.1 scf7180002754952 99.7 True indel: indel (<= 5bp) 8807830 8808857 1011835 1010808 CM091753.1 scf7180002754952 99.9 True indel: indel (<= 5bp) 8806593 8807829 1013073 1011837 CM091753.1 scf7180002754952 99.51 True indel: stretch of mismatches 8800834 8806475 1018832 1013191 CM091753.1 scf7180002754952 99.66 True indel: indel (> 5bp) 8798495 8800547 1021161 1019109 CM091753.1 scf7180002754952 99.76 True indel: indel (<= 5bp) 8793930 8798247 1025728 1021411 CM091753.1 scf7180002754952 99.77 True indel: indel (<= 5bp) 8792138 8793929 1027521 1025730 CM091753.1 scf7180002754952 99.83 True indel: indel (<= 5bp) 8791053 8792137 1028607 1027523 CM091753.1 scf7180002754952 99.82 True indel: indel (<= 5bp) 8789585 8791052 1030076 1028609 CM091753.1 scf7180002754952 99.32 True indel: indel (> 5bp) 8788846 8789557 1030806 1030095 CM091753.1 scf7180002754952 99.86 True indel: indel (<= 5bp) 8786392 8788778 1033258 1030872 CM091753.1 scf7180002754952 99.79 True relocation, scaffold gap is present, inconsistency = -61078 8495731 8786344 1385168 1094384 CM091753.1 scf7180002754952 99.45 True fake: scaffold gap size wrong estimation (local) 8385581 8495725 1501588 1391334 CM091753.1 scf7180002754952 99.44 True fake: scaffold gap size wrong estimation (local) 8374400 8385427 1512823 1501739 CM091753.1 scf7180002754952 99.08 True fake: scaffold gap size wrong estimation (local) 8368983 8374268 1522591 1517307 CM091753.1 scf7180002754952 99.72 True fake: scaffold gap size wrong estimation (local) 8116894 8368978 1779324 1527894 CM091753.1 scf7180002754952 99.15 True fake: scaffold gap size wrong estimation (local) 8064140 8116833 1837144 1784472 CM091753.1 scf7180002754952 99.47 True relocation, scaffold gap is present, inconsistency = -13677 8034472 8064053 1880609 1850908 CM091753.1 scf7180002754952 99.12 True fake: scaffold gap size wrong estimation (local) 8032144 8034413 1883056 1880784 CM091753.1 scf7180002754952 96.45 True indel: indel (<= 5bp) 8022070 8032097 1893147 1883102 CM091753.1 scf7180002754952 99.48 True fake: scaffold gap size wrong estimation (extensive) 7989881 8021814 1932212 1900541 CM091753.1 scf7180002754952 98.44 True fake: scaffold gap size wrong estimation (extensive) 7947900 7989879 1982238 1940292 CM091753.1 scf7180002754952 99.34 True CONTIG scf7180002754952 1982238 misassembled 10835557 10897966 1 62226 CM091751.1 scf7180002754953 98.99 True indel: indel (> 5bp) 10898007 10901784 62281 66061 CM091751.1 scf7180002754953 99.58 True relocation, scaffold gap is present, inconsistency = -17547 10901758 10926778 83582 108611 CM091751.1 scf7180002754953 99.24 True fake: scaffold gap size wrong estimation (local) 10926813 11008748 110810 192934 CM091751.1 scf7180002754953 99.4 True indel: indel (> 5bp) 11008813 11033984 193045 218340 CM091751.1 scf7180002754953 99.42 True fake: scaffold gap size wrong estimation (local) 11034283 11035313 220164 221194 CM091751.1 scf7180002754953 100.0 True indel: indel (<= 5bp) 11035314 11035933 221196 221815 CM091751.1 scf7180002754953 99.84 True fake: scaffold gap size wrong estimation (local) 11035934 11037102 222656 223824 CM091751.1 scf7180002754953 99.23 True indel: indel (<= 5bp) 11037104 11038119 223825 224840 CM091751.1 scf7180002754953 99.7 True indel: indel (> 5bp) 11038203 11038828 224915 225540 CM091751.1 scf7180002754953 99.36 True indel: indel (<= 5bp) 11038829 11039839 225542 226552 CM091751.1 scf7180002754953 100.0 True indel: stretch of mismatches 11039969 11041037 226682 227750 CM091751.1 scf7180002754953 99.81 True indel: indel (<= 5bp) 11041038 11041604 227752 228318 CM091751.1 scf7180002754953 99.82 True indel: indel (<= 5bp) 11041874 11042910 228590 229626 CM091751.1 scf7180002754953 99.81 True local misassembly 11044328 11047409 229627 232708 CM091751.1 scf7180002754953 99.12 True fake: scaffold gap size wrong estimation (local) 11047410 11048295 232739 233624 CM091751.1 scf7180002754953 99.66 True indel: indel (<= 5bp) 11048296 11048894 233626 234224 CM091751.1 scf7180002754953 99.5 True local misassembly 11049816 11051663 235155 237002 CM091751.1 scf7180002754953 99.95 True indel: indel (<= 5bp) 11051670 11052218 237007 237555 CM091751.1 scf7180002754953 99.45 True fake: scaffold gap size wrong estimation (local) 11052250 11053305 237676 238731 CM091751.1 scf7180002754953 99.91 True indel: stretch of mismatches 11053460 11054545 238886 239971 CM091751.1 scf7180002754953 99.72 True indel: indel (<= 5bp) 11054547 11055939 239972 241364 CM091751.1 scf7180002754953 99.78 True indel: indel (<= 5bp) 11056378 11058237 241805 243664 CM091751.1 scf7180002754953 99.73 True fake: scaffold gap size wrong estimation (local) 11058472 11104453 245117 291248 CM091751.1 scf7180002754953 99.45 True relocation, inconsistency = 9697 11114151 11148926 291249 326018 CM091751.1 scf7180002754953 99.55 True fake: scaffold gap size wrong estimation (local) 11149348 11154499 326095 331250 CM091751.1 scf7180002754953 99.65 True fake: scaffold gap size wrong estimation (local) 11154493 11302366 331773 479271 CM091751.1 scf7180002754953 99.04 True relocation, scaffold gap is present, inconsistency = -68091 11302368 11319612 547364 564686 CM091751.1 scf7180002754953 98.97 True fake: scaffold gap size wrong estimation (local) 11319692 11426840 564781 671824 CM091751.1 scf7180002754953 99.34 True indel: indel (> 5bp) 11426862 11552575 671862 797619 CM091751.1 scf7180002754953 99.39 True relocation, scaffold gap is present, inconsistency = -47260 11552570 11554327 844874 846631 CM091751.1 scf7180002754953 99.66 True indel: indel (> 5bp) 11554385 11556590 846718 848923 CM091751.1 scf7180002754953 99.32 True fake: scaffold gap size wrong estimation (local) 11556632 11563855 853038 860265 CM091751.1 scf7180002754953 99.57 True indel: indel (> 5bp) 11563927 11593736 860312 890170 CM091751.1 scf7180002754953 99.32 True fake: scaffold gap size wrong estimation (local) 11593987 11642721 890543 939093 CM091751.1 scf7180002754953 99.05 True fake: scaffold gap size wrong estimation (extensive) 11642734 11648689 947114 953086 CM091751.1 scf7180002754953 99.56 True fake: scaffold gap size wrong estimation (local) 11648778 11658819 953234 963268 CM091751.1 scf7180002754953 99.85 True fake: scaffold gap size wrong estimation (local) 11662606 11663780 964663 965831 CM091751.1 scf7180002754953 97.28 True indel: indel (<= 5bp) 11663796 11701177 965843 1003240 CM091751.1 scf7180002754953 99.91 True relocation, scaffold gap is present, inconsistency = -21836 11701955 11704646 1025854 1028545 CM091751.1 scf7180002754953 99.18 True indel: indel (<= 5bp) 11704937 11709829 1028835 1033727 CM091751.1 scf7180002754953 99.94 True indel: indel (<= 5bp) 11709831 11717601 1033728 1041498 CM091751.1 scf7180002754953 99.99 True indel: indel (<= 5bp) 11717602 11718743 1041500 1042641 CM091751.1 scf7180002754953 99.91 True indel: indel (<= 5bp) 11718744 11721949 1042643 1045848 CM091751.1 scf7180002754953 100.0 True indel: indel (<= 5bp) 11721951 11725024 1045849 1048922 CM091751.1 scf7180002754953 99.97 True relocation, scaffold gap is present, inconsistency = -23524 11725141 11727501 1072563 1074948 CM091751.1 scf7180002754953 99.79 True fake: scaffold gap size wrong estimation (local) 11727907 11762434 1075354 1109646 CM091751.1 scf7180002754953 98.86 True local misassembly 11764134 11781887 1109647 1127407 CM091751.1 scf7180002754953 99.77 True relocation, scaffold gap is present, inconsistency = -33970 11781910 11892255 1161400 1271932 CM091751.1 scf7180002754953 99.14 True fake: scaffold gap size wrong estimation (local) 11892451 11926581 1272125 1306217 CM091751.1 scf7180002754953 99.23 True local misassembly 11927280 11967932 1306970 1347607 CM091751.1 scf7180002754953 99.18 True fake: scaffold gap size wrong estimation (local) 11968251 11983308 1349520 1364553 CM091751.1 scf7180002754953 99.4 True relocation, scaffold gap is present, inconsistency = -14895 11983329 12031399 1379469 1427756 CM091751.1 scf7180002754953 99.26 True fake: scaffold gap size wrong estimation (local) 12031398 12033786 1427793 1430138 CM091751.1 scf7180002754953 97.76 True fake: scaffold gap size wrong estimation (local) 12034363 12039769 1430292 1435690 CM091751.1 scf7180002754953 99.52 True fake: scaffold gap size wrong estimation (local) 12039764 12048772 1438713 1447461 CM091751.1 scf7180002754953 96.32 True fake: scaffold gap size wrong estimation (local) 12048942 12054502 1448516 1454098 CM091751.1 scf7180002754953 99.6 True fake: scaffold gap size wrong estimation (local) 12054518 12102404 1458422 1506360 CM091751.1 scf7180002754953 99.52 True indel: indel (> 5bp) 12102441 12148371 1506447 1552449 CM091751.1 scf7180002754953 99.49 True fake: scaffold gap size wrong estimation (local) 12148655 12165646 1557195 1574186 CM091751.1 scf7180002754953 99.54 True relocation, scaffold gap is present, inconsistency = -16886 12165637 12183365 1591063 1608800 CM091751.1 scf7180002754953 99.29 True fake: scaffold gap size wrong estimation (local) 12183880 12193301 1610560 1619981 CM091751.1 scf7180002754953 99.28 True fake: scaffold gap size wrong estimation (extensive) 12193314 12253532 1629244 1689428 CM091751.1 scf7180002754953 99.22 True indel: indel (<= 5bp) 12253599 12449379 1689498 1885387 CM091751.1 scf7180002754953 99.41 True translocation, scaffold gap is present 3846903 3854750 1885478 1893341 CM091752.1 scf7180002754953 99.52 True fake: scaffold gap size wrong estimation (local) 3855163 3881979 1896618 1922788 CM091752.1 scf7180002754953 97.39 True fake: scaffold gap size wrong estimation (local) 3882328 3894160 1923177 1935025 CM091752.1 scf7180002754953 99.66 True relocation, scaffold gap is present, inconsistency = -11516 3894502 3903847 1946883 1956365 CM091752.1 scf7180002754953 98.91 True fake: scaffold gap size wrong estimation (local) 3903242 3931778 1957356 1985124 CM091752.1 scf7180002754953 96.88 True relocation, scaffold gap is present, inconsistency = -24673 3931893 3934548 2009912 2012568 CM091752.1 scf7180002754953 99.92 True fake: scaffold gap size wrong estimation (local) 3934678 3936650 2012828 2014805 CM091752.1 scf7180002754953 99.7 True fake: scaffold gap size wrong estimation (local) 3936956 3944061 2015111 2022220 CM091752.1 scf7180002754953 99.92 True local misassembly 3944247 3947042 2023320 2026115 CM091752.1 scf7180002754953 100.0 True local misassembly 3950958 3953122 2026334 2028498 CM091752.1 scf7180002754953 99.95 True indel: indel (<= 5bp) 3953124 3955305 2028499 2030680 CM091752.1 scf7180002754953 100.0 True indel: indel (> 5bp) 3955392 3969420 2030713 2044741 CM091752.1 scf7180002754953 99.99 True fake: scaffold gap size wrong estimation (local) 3971133 3974312 2051860 2055036 CM091752.1 scf7180002754953 99.75 True CONTIG scf7180002754953 2055036 misassembled 6993523 6994958 172 1607 CM091765.1 scf7180002754954 99.93 True indel: indel (<= 5bp) 6994959 6995489 1613 2143 CM091765.1 scf7180002754954 99.81 True indel: indel (<= 5bp) 6995490 6996032 2146 2688 CM091765.1 scf7180002754954 99.82 True indel: indel (<= 5bp) 6996033 6996657 2691 3315 CM091765.1 scf7180002754954 99.68 True fake: scaffold gap size wrong estimation (local) 6997226 7000031 3900 6705 CM091765.1 scf7180002754954 99.68 True indel: indel (<= 5bp) 7000033 7001827 6706 8500 CM091765.1 scf7180002754954 99.83 True indel: indel (> 5bp) 7001968 7002533 8622 9187 CM091765.1 scf7180002754954 99.82 True indel: indel (<= 5bp) 7002534 7003487 9189 10142 CM091765.1 scf7180002754954 100.0 True indel: indel (<= 5bp) 7003489 7004443 10143 11097 CM091765.1 scf7180002754954 99.9 True indel: indel (> 5bp) 7004936 7006008 11580 12652 CM091765.1 scf7180002754954 99.63 True indel: indel (<= 5bp) 7006108 7009161 12756 15809 CM091765.1 scf7180002754954 99.8 True indel: indel (<= 5bp) 7009162 7009887 15811 16536 CM091765.1 scf7180002754954 99.59 True local misassembly 7011034 7011888 17704 18558 CM091765.1 scf7180002754954 99.88 True indel: indel (<= 5bp) 7011889 7016025 18560 22696 CM091765.1 scf7180002754954 99.85 True indel: indel (> 5bp) 7016038 7016980 22697 23639 CM091765.1 scf7180002754954 99.89 True indel: indel (<= 5bp) 7016981 7019489 23641 26149 CM091765.1 scf7180002754954 99.96 True indel: indel (<= 5bp) 7019490 7020820 26151 27481 CM091765.1 scf7180002754954 99.77 True indel: indel (<= 5bp) 7020821 7022061 27483 28723 CM091765.1 scf7180002754954 100.0 True indel: indel (<= 5bp) 7022065 7023767 28724 30426 CM091765.1 scf7180002754954 99.94 True indel: indel (<= 5bp) 7023768 7026825 30428 33485 CM091765.1 scf7180002754954 99.87 True indel: indel (<= 5bp) 7026826 7029874 33487 36535 CM091765.1 scf7180002754954 100.0 True indel: indel (<= 5bp) 7029875 7034763 36537 41425 CM091765.1 scf7180002754954 99.98 True indel: indel (<= 5bp) 7034764 7035589 41427 42252 CM091765.1 scf7180002754954 99.88 True indel: indel (<= 5bp) 7035591 7037053 42253 43715 CM091765.1 scf7180002754954 99.86 True indel: indel (<= 5bp) 7037461 7042020 44125 48684 CM091765.1 scf7180002754954 99.74 True indel: indel (<= 5bp) 7042021 7042827 48688 49494 CM091765.1 scf7180002754954 99.63 True indel: indel (<= 5bp) 7042830 7043725 49495 50390 CM091765.1 scf7180002754954 99.55 True indel: indel (<= 5bp) 7043727 7046286 50391 52950 CM091765.1 scf7180002754954 99.92 True indel: indel (> 5bp) 7046571 7048257 53228 54914 CM091765.1 scf7180002754954 99.53 True indel: indel (<= 5bp) 7048259 7049837 54915 56493 CM091765.1 scf7180002754954 99.87 True indel: indel (<= 5bp) 7049946 7052493 56604 59151 CM091765.1 scf7180002754954 99.41 True indel: indel (<= 5bp) 7052494 7053590 59153 60249 CM091765.1 scf7180002754954 98.72 True local misassembly 7054995 7056531 61653 63189 CM091765.1 scf7180002754954 99.02 True local misassembly 7061835 7068460 63285 69910 CM091765.1 scf7180002754954 99.61 True indel: indel (> 5bp) 7068474 7069245 69911 70682 CM091765.1 scf7180002754954 99.74 True indel: indel (> 5bp) 7069266 7071292 70737 72763 CM091765.1 scf7180002754954 99.8 True indel: indel (<= 5bp) 7071293 7072040 72765 73512 CM091765.1 scf7180002754954 99.87 True indel: stretch of mismatches 7072254 7075658 73726 77130 CM091765.1 scf7180002754954 99.88 True indel: indel (<= 5bp) 7075660 7076486 77131 77957 CM091765.1 scf7180002754954 99.88 True indel: indel (> 5bp) 7076551 7081092 78007 82548 CM091765.1 scf7180002754954 99.67 True indel: indel (<= 5bp) 7081407 7082013 82864 83470 CM091765.1 scf7180002754954 100.0 True local misassembly 7083615 7084748 85060 86193 CM091765.1 scf7180002754954 100.0 True indel: indel (<= 5bp) 7084752 7087724 86194 89166 CM091765.1 scf7180002754954 99.8 True local misassembly 7088316 7090703 89761 92148 CM091765.1 scf7180002754954 99.75 True indel: indel (<= 5bp) 7090987 7093298 92435 94746 CM091765.1 scf7180002754954 99.78 True indel: indel (<= 5bp) 7093546 7094531 94996 95981 CM091765.1 scf7180002754954 100.0 True indel: indel (<= 5bp) 7094532 7095146 95983 96597 CM091765.1 scf7180002754954 100.0 True indel: indel (<= 5bp) 7095190 7095763 96640 97213 CM091765.1 scf7180002754954 100.0 True indel: indel (<= 5bp) 7095766 7096357 97214 97805 CM091765.1 scf7180002754954 99.66 True indel: indel (<= 5bp) 7096373 7096883 97823 98333 CM091765.1 scf7180002754954 99.02 True indel: indel (> 5bp) 7096899 7097605 98340 99046 CM091765.1 scf7180002754954 99.29 True fake: scaffold gap size wrong estimation (local) 7098523 7114873 99454 115416 CM091765.1 scf7180002754954 96.78 True fake: scaffold gap size wrong estimation (local) 7114881 7123369 120185 128714 CM091765.1 scf7180002754954 99.4 True fake: scaffold gap size wrong estimation (local) 7123424 7142361 133688 152564 CM091765.1 scf7180002754954 96.44 True indel: indel (<= 5bp) 7142405 7157917 152613 167892 CM091765.1 scf7180002754954 97.38 True translocation 6672505 6677756 173063 167893 CM091756.1 scf7180002754954 96.29 True fake: scaffold gap size wrong estimation (local) 6654860 6672141 190443 173129 CM091756.1 scf7180002754954 99.08 True fake: scaffold gap size wrong estimation (local) 6627849 6654759 217538 190541 CM091756.1 scf7180002754954 99.12 True fake: scaffold gap size wrong estimation (local) 6626741 6627458 221011 220294 CM091756.1 scf7180002754954 100.0 True indel: indel (<= 5bp) 6626055 6626687 221700 221068 CM091756.1 scf7180002754954 96.52 True local misassembly 6624903 6625473 222482 221912 CM091756.1 scf7180002754954 99.65 True indel: indel (> 5bp) 6624031 6624896 223348 222483 CM091756.1 scf7180002754954 99.88 True indel: indel (<= 5bp) 6623479 6624030 223901 223350 CM091756.1 scf7180002754954 100.0 True indel: indel (> 5bp) 6622142 6623125 225217 224234 CM091756.1 scf7180002754954 99.29 True fake: scaffold gap size wrong estimation (local) 6620912 6621934 226418 225401 CM091756.1 scf7180002754954 99.02 True fake: scaffold gap size wrong estimation (local) 6558932 6620156 287613 226973 CM091756.1 scf7180002754954 98.23 True fake: scaffold gap size wrong estimation (local) 6510671 6558926 341530 293224 CM091756.1 scf7180002754954 99.13 True indel: indel (> 5bp) 6458051 6510460 394307 341761 CM091756.1 scf7180002754954 99.24 True relocation, scaffold gap is present, inconsistency = -50990 6496776 6497692 406578 405656 CM091756.1 scf7180002754954 99.46 True fake: scaffold gap size wrong estimation (local) 6451773 6458137 451984 445618 CM091756.1 scf7180002754954 99.38 True indel: indel (> 5bp) 6371869 6451706 531993 452061 CM091756.1 scf7180002754954 99.44 True indel: indel (<= 5bp) 6307820 6371791 596093 532069 CM091756.1 scf7180002754954 99.35 True local misassembly 6250206 6307113 652841 596940 CM091756.1 scf7180002754954 97.21 True local misassembly 6236989 6247936 671525 660582 CM091756.1 scf7180002754954 99.29 True relocation, scaffold gap is present, inconsistency = -44976 6223869 6236970 729697 716520 CM091756.1 scf7180002754954 99.02 True indel: indel (> 5bp) 6205295 6223772 747878 729726 CM091756.1 scf7180002754954 97.36 True fake: scaffold gap size wrong estimation (local) 6169144 6205324 786757 750618 CM091756.1 scf7180002754954 99.11 True relocation, scaffold gap is present, inconsistency = -35626 6149855 6169148 841635 822379 CM091756.1 scf7180002754954 99.09 True fake: scaffold gap size wrong estimation (local) 6121326 6149634 874801 846496 CM091756.1 scf7180002754954 99.59 True indel: indel (> 5bp) 6113016 6121282 883127 874863 CM091756.1 scf7180002754954 99.65 True relocation, scaffold gap is present, inconsistency = -25337 6094192 6113118 927269 908362 CM091756.1 scf7180002754954 99.67 True relocation, scaffold gap is present, inconsistency = -10510 6071991 6094176 959996 937795 CM091756.1 scf7180002754954 99.38 True fake: scaffold gap size wrong estimation (local) 6015251 6071578 1016707 960405 CM091756.1 scf7180002754954 99.45 True translocation, scaffold gap is present 17907916 17908535 1066936 1066318 CM091752.1 scf7180002754954 98.23 True translocation, scaffold gap is present 5968220 6014190 1112883 1066957 CM091756.1 scf7180002754954 99.47 True relocation, scaffold gap is present, inconsistency = -45388 5917135 5967782 1209398 1158709 CM091756.1 scf7180002754954 99.4 True relocation, scaffold gap is present, inconsistency = -37713 5859582 5917129 1304712 1247117 CM091756.1 scf7180002754954 99.39 True CONTIG scf7180002754954 1304720 misassembled 13522160 13551344 1 28698 CM091760.1 scf7180002754955 97.89 True fake: scaffold gap size wrong estimation (local) 13551249 13585921 35568 69986 CM091760.1 scf7180002754955 98.26 True indel: indel (> 5bp) 13585946 13627018 70020 109705 CM091760.1 scf7180002754955 95.57 True relocation, scaffold gap is present, inconsistency = -10605 13627012 13645076 120304 138026 CM091760.1 scf7180002754955 97.4 True fake: scaffold gap size wrong estimation (local) 13645164 13752076 144707 251631 CM091760.1 scf7180002754955 99.17 True relocation, scaffold gap is present, inconsistency = -68105 13752541 13754298 320201 321958 CM091760.1 scf7180002754955 99.32 True indel: indel (<= 5bp) 13754301 13756553 321959 324211 CM091760.1 scf7180002754955 99.33 True local misassembly 13757249 13759060 324212 326023 CM091760.1 scf7180002754955 98.62 True indel: stretch of mismatches 13759099 13760154 326062 327117 CM091760.1 scf7180002754955 99.53 True indel: indel (<= 5bp) 13760155 13760745 327119 327709 CM091760.1 scf7180002754955 99.66 True local misassembly 13761413 13762616 328379 329582 CM091760.1 scf7180002754955 99.17 True fake: scaffold gap size wrong estimation (local) 13763241 13792450 330845 359293 CM091760.1 scf7180002754955 95.85 True fake: scaffold gap size wrong estimation (local) 13792762 13796158 359666 363074 CM091760.1 scf7180002754955 99.09 True fake: scaffold gap size wrong estimation (local) 13796173 13813739 366499 384023 CM091760.1 scf7180002754955 98.66 True fake: scaffold gap size wrong estimation (local) 13814815 13815402 385100 385687 CM091760.1 scf7180002754955 99.66 True indel: indel (<= 5bp) 13815855 13817042 386141 387328 CM091760.1 scf7180002754955 99.75 True indel: indel (<= 5bp) 13817499 13818279 387787 388567 CM091760.1 scf7180002754955 99.36 True indel: indel (<= 5bp) 13818281 13818954 388568 389241 CM091760.1 scf7180002754955 98.52 True indel: indel (<= 5bp) 13818955 13820922 389243 391210 CM091760.1 scf7180002754955 99.59 True indel: indel (<= 5bp) 13820923 13822580 391212 392869 CM091760.1 scf7180002754955 99.64 True fake: scaffold gap size wrong estimation (local) 13823983 13825362 393525 394904 CM091760.1 scf7180002754955 99.49 True indel: stretch of mismatches 13825657 13827240 395199 396782 CM091760.1 scf7180002754955 99.31 True indel: indel (<= 5bp) 13827241 13828087 396786 397632 CM091760.1 scf7180002754955 99.88 True local misassembly 13828688 13829535 398366 399213 CM091760.1 scf7180002754955 99.17 True indel: indel (<= 5bp) 13829537 13830114 399214 399791 CM091760.1 scf7180002754955 99.65 True fake: scaffold gap size wrong estimation (local) 13830845 13835892 406189 411129 CM091760.1 scf7180002754955 99.09 True local misassembly 13836409 13875077 411689 450391 CM091760.1 scf7180002754955 99.2 True fake: scaffold gap size wrong estimation (local) 13876899 13883881 455548 462497 CM091760.1 scf7180002754955 98.67 True fake: scaffold gap size wrong estimation (local) 13883836 13914190 469297 499632 CM091760.1 scf7180002754955 99.1 True relocation, scaffold gap is present, inconsistency = -12556 13914416 13921404 512414 519427 CM091760.1 scf7180002754955 99.17 True CONTIG scf7180002754955 519507 misassembled 5988386 6123278 134482 1 CM091763.1 scf7180002754956 99.17 True indel: indel (> 5bp) 5940155 5988301 182307 134576 CM091763.1 scf7180002754956 98.83 True relocation, scaffold gap is present, inconsistency = -36933 5846813 5940157 312220 219238 CM091763.1 scf7180002754956 99.07 True local misassembly 5839295 5845049 318084 312221 CM091763.1 scf7180002754956 97.71 True indel: stretch of mismatches 5832576 5839266 324806 318113 CM091763.1 scf7180002754956 99.64 True relocation, scaffold gap is present, inconsistency = -53673 5782958 5832550 428057 378505 CM091763.1 scf7180002754956 99.46 True fake: scaffold gap size wrong estimation (local) 5750702 5782848 460210 428152 CM091763.1 scf7180002754956 98.97 True fake: scaffold gap size wrong estimation (local) 5734271 5750394 476631 460508 CM091763.1 scf7180002754956 99.58 True translocation, scaffold gap is present 5454454 5471024 480570 497116 CM091760.1 scf7180002754956 99.17 True indel: indel (> 5bp) 5471094 5482037 497167 507906 CM091760.1 scf7180002754956 97.31 True relocation, scaffold gap is present, inconsistency = -27336 5482024 5539193 535229 592431 CM091760.1 scf7180002754956 99.1 True fake: scaffold gap size wrong estimation (local) 5539600 5541856 594906 597162 CM091760.1 scf7180002754956 98.85 True fake: scaffold gap size wrong estimation (local) 5541890 5555063 598289 611483 CM091760.1 scf7180002754956 99.25 True relocation, scaffold gap is present, inconsistency = -10703 5555047 5606311 622170 673382 CM091760.1 scf7180002754956 98.81 True fake: scaffold gap size wrong estimation (local) 5606861 5669712 673615 736213 CM091760.1 scf7180002754956 98.79 True fake: scaffold gap size wrong estimation (local) 5669856 5686802 736900 753433 CM091760.1 scf7180002754956 96.89 True fake: scaffold gap size wrong estimation (local) 5686856 5695756 756473 765368 CM091760.1 scf7180002754956 99.66 True fake: scaffold gap size wrong estimation (local) 5695840 5747262 765992 816503 CM091760.1 scf7180002754956 97.21 True relocation, scaffold gap is present, inconsistency = -16375 5747256 5809705 832872 895324 CM091760.1 scf7180002754956 99.09 True fake: scaffold gap size wrong estimation (local) 5809965 5836346 895490 921604 CM091760.1 scf7180002754956 98.37 True relocation, scaffold gap is present, inconsistency = -17189 5836348 5847002 938795 949417 CM091760.1 scf7180002754956 98.89 True fake: scaffold gap size wrong estimation (local) 5847307 5866242 949936 968909 CM091760.1 scf7180002754956 99.23 True fake: scaffold gap size wrong estimation (local) 5866302 5879484 975600 988516 CM091760.1 scf7180002754956 97.57 True relocation, scaffold gap is present, inconsistency = -10850 5879484 5879992 999366 999874 CM091760.1 scf7180002754956 100.0 True indel: indel (<= 5bp) 5879994 5880747 999875 1000628 CM091760.1 scf7180002754956 100.0 True fake: scaffold gap size wrong estimation (local) 5880995 5882996 1000893 1002894 CM091760.1 scf7180002754956 99.55 True indel: stretch of mismatches 5883165 5883668 1003063 1003566 CM091760.1 scf7180002754956 99.8 True fake: scaffold gap size wrong estimation (local) 5884424 5896439 1003587 1015608 CM091760.1 scf7180002754956 99.68 True relocation, scaffold gap is present, inconsistency = -10948 5896544 5911886 1026661 1041989 CM091760.1 scf7180002754956 99.54 True relocation, scaffold gap is present, inconsistency = -14457 5911897 5972128 1056457 1116702 CM091760.1 scf7180002754956 99.89 True relocation, scaffold gap is present, inconsistency = -50215 5972375 6018086 1167164 1212866 CM091760.1 scf7180002754956 99.79 True relocation, scaffold gap is present, inconsistency = -34097 6017964 6068019 1246841 1296352 CM091760.1 scf7180002754956 98.75 True relocation, scaffold gap is present, inconsistency = -21251 6067925 6070451 1317509 1320034 CM091760.1 scf7180002754956 99.33 True indel: indel (> 5bp) 6070605 6124722 1320205 1374367 CM091760.1 scf7180002754956 99.71 True CONTIG scf7180002754956 1375728 misassembled 2744182 2744755 789 216 CM091768.1 scf7180002754957 99.3 True local misassembly 2742126 2742845 2368 1649 CM091768.1 scf7180002754957 99.31 True local misassembly 2739687 2740555 4212 3344 CM091768.1 scf7180002754957 98.27 True local misassembly 2737160 2737815 5546 4891 CM091768.1 scf7180002754957 99.39 True indel: indel (> 5bp) 2736350 2737149 6346 5547 CM091768.1 scf7180002754957 99.12 True fake: scaffold gap size wrong estimation (local) 2716194 2732881 25918 9706 CM091768.1 scf7180002754957 95.91 True local misassembly 2714028 2715443 27843 26428 CM091768.1 scf7180002754957 98.45 True indel: indel (> 5bp) 2713484 2714027 28393 27850 CM091768.1 scf7180002754957 100.0 True indel: indel (<= 5bp) 2712972 2713482 28904 28394 CM091768.1 scf7180002754957 100.0 True indel: stretch of mismatches 2711408 2712537 30468 29339 CM091768.1 scf7180002754957 98.32 True indel: indel (<= 5bp) 2710733 2711404 31140 30469 CM091768.1 scf7180002754957 99.4 True fake: scaffold gap size wrong estimation (local) 2709241 2710117 32620 31744 CM091768.1 scf7180002754957 99.89 True local misassembly 2708133 2708706 33735 33162 CM091768.1 scf7180002754957 99.65 True fake: scaffold gap size wrong estimation (local) 2703597 2704841 37598 36354 CM091768.1 scf7180002754957 99.76 True fake: scaffold gap size wrong estimation (local) 2701465 2702080 39087 38472 CM091768.1 scf7180002754957 99.68 True indel: indel (<= 5bp) 2700780 2701458 39775 39097 CM091768.1 scf7180002754957 99.41 True indel: indel (<= 5bp) 2699167 2700779 41389 39777 CM091768.1 scf7180002754957 98.64 True indel: indel (<= 5bp) 2698549 2699150 42006 41405 CM091768.1 scf7180002754957 99.17 True indel: indel (<= 5bp) 2697908 2698547 42646 42007 CM091768.1 scf7180002754957 99.69 True local misassembly 2695175 2696542 45383 44016 CM091768.1 scf7180002754957 99.27 True fake: scaffold gap size wrong estimation (local) 2660079 2694981 84687 51006 CM091768.1 scf7180002754957 96.01 True relocation, scaffold gap is present, inconsistency = -30196 2652363 2659925 122630 115037 CM091768.1 scf7180002754957 97.32 True local misassembly 2650325 2651554 124459 123230 CM091768.1 scf7180002754957 99.59 True indel: stretch of mismatches 2648954 2649945 125830 124839 CM091768.1 scf7180002754957 99.5 True indel: indel (> 5bp) 2648044 2648680 126669 126033 CM091768.1 scf7180002754957 97.65 True fake: scaffold gap size wrong estimation (local) 2635123 2645786 138797 128123 CM091768.1 scf7180002754957 98.04 True fake: scaffold gap size wrong estimation (local) 2633949 2635039 144536 143446 CM091768.1 scf7180002754957 99.36 True local misassembly 2632856 2633554 145325 144627 CM091768.1 scf7180002754957 99.0 True indel: indel (> 5bp) 2631737 2632508 146456 145685 CM091768.1 scf7180002754957 99.09 True indel: indel (<= 5bp) 2630823 2631674 147375 146524 CM091768.1 scf7180002754957 99.53 True fake: scaffold gap size wrong estimation (local) 2629473 2630433 152863 151903 CM091768.1 scf7180002754957 99.58 True indel: indel (<= 5bp) 2628436 2629113 153903 153226 CM091768.1 scf7180002754957 99.71 True indel: indel (> 5bp) 2626933 2628419 155390 153904 CM091768.1 scf7180002754957 99.8 True local misassembly 2624884 2626413 156920 155391 CM091768.1 scf7180002754957 99.48 True local misassembly 2623298 2624186 158392 157504 CM091768.1 scf7180002754957 99.89 True indel: indel (<= 5bp) 2622713 2623297 158978 158394 CM091768.1 scf7180002754957 99.66 True indel: indel (<= 5bp) 2587796 2622551 193201 159135 CM091768.1 scf7180002754957 96.65 True local misassembly 2574425 2586438 205484 193467 CM091768.1 scf7180002754957 99.43 True local misassembly 2573371 2573913 206531 205989 CM091768.1 scf7180002754957 99.82 True indel: indel (<= 5bp) 2572572 2573370 207333 206535 CM091768.1 scf7180002754957 99.75 True indel: indel (<= 5bp) 2571962 2572571 207946 207337 CM091768.1 scf7180002754957 99.18 True fake: scaffold gap size wrong estimation (local) 2570635 2571663 212112 211084 CM091768.1 scf7180002754957 99.51 True local misassembly 2567881 2569378 214509 213012 CM091768.1 scf7180002754957 99.73 True indel: indel (> 5bp) 2566646 2567589 215736 214793 CM091768.1 scf7180002754957 99.58 True indel: indel (<= 5bp) 2565949 2566645 216434 215738 CM091768.1 scf7180002754957 99.43 True indel: indel (> 5bp) 2564853 2565856 217555 216552 CM091768.1 scf7180002754957 99.0 True local misassembly 2560837 2563583 221100 218347 CM091768.1 scf7180002754957 98.77 True relocation, scaffold gap is present, inconsistency = -10909 2558269 2559897 234575 232949 CM091768.1 scf7180002754957 99.26 True fake: scaffold gap size wrong estimation (local) 2555967 2556778 237249 236438 CM091768.1 scf7180002754957 99.14 True fake: scaffold gap size wrong estimation (local) 2555017 2555570 238214 237661 CM091768.1 scf7180002754957 98.19 True fake: scaffold gap size wrong estimation (local) 2484888 2554437 307672 238765 CM091768.1 scf7180002754957 97.51 True fake: scaffold gap size wrong estimation (local) 2482555 2484295 310116 308376 CM091768.1 scf7180002754957 99.2 True local misassembly 2480844 2481868 311834 310810 CM091768.1 scf7180002754957 99.61 True local misassembly 2476590 2480714 315959 311835 CM091768.1 scf7180002754957 99.05 True indel: indel (<= 5bp) 2475933 2476562 316617 315988 CM091768.1 scf7180002754957 99.05 True local misassembly 2472412 2474124 319514 317802 CM091768.1 scf7180002754957 99.59 True indel: indel (<= 5bp) 2471502 2472411 320425 319516 CM091768.1 scf7180002754957 99.56 True indel: indel (<= 5bp) 2469728 2471501 322200 320427 CM091768.1 scf7180002754957 99.21 True local misassembly 2468957 2469471 322715 322201 CM091768.1 scf7180002754957 98.64 True indel: indel (> 5bp) 2467496 2468586 324162 323072 CM091768.1 scf7180002754957 99.36 True fake: scaffold gap size wrong estimation (local) 2464195 2465078 327403 326520 CM091768.1 scf7180002754957 99.32 True indel: indel (> 5bp) 2463348 2463858 328224 327714 CM091768.1 scf7180002754957 98.83 True local misassembly 2461174 2462023 329459 328610 CM091768.1 scf7180002754957 98.94 True indel: indel (<= 5bp) 2460025 2461105 330610 329530 CM091768.1 scf7180002754957 99.26 True local misassembly 2448856 2458944 341636 331752 CM091768.1 scf7180002754957 95.78 True local misassembly 2447211 2447931 343273 342553 CM091768.1 scf7180002754957 99.86 True fake: scaffold gap size wrong estimation (extensive) 2441499 2444777 357470 354185 CM091768.1 scf7180002754957 98.75 True fake: scaffold gap size wrong estimation (local) 2440199 2440894 358688 357993 CM091768.1 scf7180002754957 99.14 True local misassembly 2438928 2439506 359578 359000 CM091768.1 scf7180002754957 99.83 True indel: indel (<= 5bp) 2437992 2438827 360511 359676 CM091768.1 scf7180002754957 99.64 True local misassembly 2435837 2437148 362476 361165 CM091768.1 scf7180002754957 99.77 True fake: scaffold gap size wrong estimation (local) 2432831 2434601 365967 364209 CM091768.1 scf7180002754957 97.06 True fake: scaffold gap size wrong estimation (local) 2430212 2432269 370222 368168 CM091768.1 scf7180002754957 98.79 True fake: scaffold gap size wrong estimation (local) 2425731 2428100 374702 372333 CM091768.1 scf7180002754957 99.2 True local misassembly 2423455 2424230 376186 375411 CM091768.1 scf7180002754957 99.36 True indel: indel (<= 5bp) 2421988 2423337 377648 376299 CM091768.1 scf7180002754957 99.26 True indel: indel (> 5bp) 2421265 2421939 378323 377649 CM091768.1 scf7180002754957 99.7 True indel: indel (<= 5bp) 2420738 2421264 378852 378326 CM091768.1 scf7180002754957 99.62 True local misassembly 2418666 2420066 380914 379514 CM091768.1 scf7180002754957 99.21 True fake: scaffold gap size wrong estimation (local) 2417199 2417762 382658 382095 CM091768.1 scf7180002754957 98.94 True indel: indel (<= 5bp) 2416000 2417169 383860 382691 CM091768.1 scf7180002754957 99.15 True local misassembly 2412727 2413471 386207 385463 CM091768.1 scf7180002754957 96.78 True fake: scaffold gap size wrong estimation (local) 2410147 2411610 388782 387319 CM091768.1 scf7180002754957 99.25 True local misassembly 2407576 2409602 391313 389287 CM091768.1 scf7180002754957 99.26 True fake: scaffold gap size wrong estimation (local) 2405906 2406759 392678 391825 CM091768.1 scf7180002754957 98.36 True fake: scaffold gap size wrong estimation (local) 2404613 2405466 394939 394086 CM091768.1 scf7180002754957 99.88 True local misassembly 2400259 2400835 398969 398393 CM091768.1 scf7180002754957 99.31 True indel: indel (<= 5bp) 2398831 2400258 400399 398972 CM091768.1 scf7180002754957 99.51 True indel: indel (<= 5bp) 2398016 2398830 401216 400402 CM091768.1 scf7180002754957 98.65 True fake: scaffold gap size wrong estimation (local) 2391444 2392944 406621 405121 CM091768.1 scf7180002754957 98.0 True indel: indel (> 5bp) 2390756 2391402 407268 406622 CM091768.1 scf7180002754957 98.61 True local misassembly 2388857 2390354 408837 407340 CM091768.1 scf7180002754957 99.13 True fake: scaffold gap size wrong estimation (local) 2388213 2388856 409504 408861 CM091768.1 scf7180002754957 99.31 True translocation 7095492 7119586 433611 409505 CM091759.1 scf7180002754957 99.33 True fake: scaffold gap size wrong estimation (local) 7083871 7095229 446328 434959 CM091759.1 scf7180002754957 98.85 True translocation 1572634 1574946 446329 448642 CM091768.1 scf7180002754957 99.34 True relocation, scaffold gap is present, inconsistency = -15648 1575875 1633163 465219 522476 CM091768.1 scf7180002754957 99.68 True indel: indel (<= 5bp) 1633214 1645320 522531 534639 CM091768.1 scf7180002754957 99.87 True relocation, scaffold gap is present, inconsistency = -35465 1643064 1643546 567848 568368 CM091768.1 scf7180002754957 95.96 True fake: scaffold gap size wrong estimation (local) 1645774 1655888 569703 579545 CM091768.1 scf7180002754957 96.06 True fake: scaffold gap size wrong estimation (local) 1656035 1656913 579681 580559 CM091768.1 scf7180002754957 99.77 True indel: indel (> 5bp) 1657134 1658701 580796 582363 CM091768.1 scf7180002754957 99.68 True local misassembly 1660505 1661278 583322 584095 CM091768.1 scf7180002754957 99.48 True indel: stretch of mismatches 1661332 1663637 584149 586454 CM091768.1 scf7180002754957 99.52 True fake: scaffold gap size wrong estimation (local) 1664995 1676916 587832 599771 CM091768.1 scf7180002754957 98.71 True local misassembly 1677308 1689047 599829 611514 CM091768.1 scf7180002754957 98.4 True indel: indel (> 5bp) 1689073 1696690 611548 619189 CM091768.1 scf7180002754957 98.77 True indel: indel (<= 5bp) 1696713 1702386 619214 624887 CM091768.1 scf7180002754957 98.65 True fake: scaffold gap size wrong estimation (local) 1703727 1707312 625050 628588 CM091768.1 scf7180002754957 96.64 True CONTIG scf7180002754957 628708 misassembled 413556 415003 101 1548 CM091752.1 scf7180002754958 98.0 True local misassembly 415782 416755 2035 3008 CM091752.1 scf7180002754958 99.59 True indel: indel (> 5bp) 416981 419732 3240 5991 CM091752.1 scf7180002754958 99.56 True fake: scaffold gap size wrong estimation (local) 419925 420888 6189 7152 CM091752.1 scf7180002754958 99.27 True indel: indel (<= 5bp) 421293 422832 7562 9101 CM091752.1 scf7180002754958 99.68 True local misassembly 423876 424629 10179 10932 CM091752.1 scf7180002754958 99.73 True local misassembly 425243 425828 11559 12144 CM091752.1 scf7180002754958 97.95 True local misassembly 427010 428042 12145 13177 CM091752.1 scf7180002754958 99.61 True translocation 4805976 4833752 40916 13215 CM091764.1 scf7180002754958 99.16 True relocation, scaffold gap is present, inconsistency = -15565 4800300 4805973 62150 56484 CM091764.1 scf7180002754958 99.38 True fake: scaffold gap size wrong estimation (local) 4773342 4800054 89374 62644 CM091764.1 scf7180002754958 99.68 True relocation, scaffold gap is present, inconsistency = -25922 4751899 4773320 136782 115318 CM091764.1 scf7180002754958 99.35 True fake: scaffold gap size wrong estimation (local) 4479662 4751770 418455 136897 CM091764.1 scf7180002754958 98.79 True indel: indel (> 5bp) 4465974 4479596 432117 418481 CM091764.1 scf7180002754958 99.45 True fake: scaffold gap size wrong estimation (local) 4440438 4465943 458294 432751 CM091764.1 scf7180002754958 99.27 True fake: scaffold gap size wrong estimation (local) 4410021 4439898 488370 458401 CM091764.1 scf7180002754958 99.48 True fake: scaffold gap size wrong estimation (local) 4313782 4409902 584177 488484 CM091764.1 scf7180002754958 98.81 True indel: indel (> 5bp) 4261931 4313699 636034 584231 CM091764.1 scf7180002754958 99.19 True indel: indel (<= 5bp) 4253808 4261908 643864 636055 CM091764.1 scf7180002754958 95.74 True fake: scaffold gap size wrong estimation (local) 4240110 4253748 659441 646279 CM091764.1 scf7180002754958 95.61 True fake: scaffold gap size wrong estimation (local) 4186210 4239866 713312 659581 CM091764.1 scf7180002754958 99.26 True fake: scaffold gap size wrong estimation (local) 4180898 4184296 717510 714086 CM091764.1 scf7180002754958 99.06 True translocation, scaffold gap is present 814868 822385 807286 814805 CM091763.1 scf7180002754958 99.8 True fake: scaffold gap size wrong estimation (local) 822587 850090 817091 844592 CM091763.1 scf7180002754958 99.92 True CONTIG scf7180002754958 869836 misassembled 14018850 14019409 1 560 CM091754.1 scf7180002754960 99.82 True fake: scaffold gap size wrong estimation (local) 14019480 14034930 801 16165 CM091754.1 scf7180002754960 96.65 True fake: scaffold gap size wrong estimation (local) 14035049 14037911 16283 19111 CM091754.1 scf7180002754960 98.45 True relocation, scaffold gap is present, inconsistency = 141685 13874639 13893343 37850 19132 CM091754.1 scf7180002754960 98.62 True relocation, scaffold gap is present, inconsistency = 144653 14038017 14118941 37871 118044 CM091754.1 scf7180002754960 97.43 True indel: indel (> 5bp) 14119232 14145294 118384 143692 CM091754.1 scf7180002754960 95.5 True indel: indel (<= 5bp) 14145451 14151693 143852 150096 CM091754.1 scf7180002754960 99.34 True indel: indel (> 5bp) 14152013 14210328 150381 207588 CM091754.1 scf7180002754960 97.51 True fake: scaffold gap size wrong estimation (local) 14210625 14214462 208773 212632 CM091754.1 scf7180002754960 99.58 True fake: scaffold gap size wrong estimation (local) 14214716 14215832 212887 214003 CM091754.1 scf7180002754960 96.24 True fake: scaffold gap size wrong estimation (local) 14217381 14219117 214963 216699 CM091754.1 scf7180002754960 99.65 True indel: indel (<= 5bp) 14219121 14219843 216700 217422 CM091754.1 scf7180002754960 99.72 True indel: indel (<= 5bp) 14219844 14220873 217424 218453 CM091754.1 scf7180002754960 99.81 True indel: indel (<= 5bp) 14220874 14222484 218455 220065 CM091754.1 scf7180002754960 99.81 True indel: indel (<= 5bp) 14222485 14224893 220071 222479 CM091754.1 scf7180002754960 99.5 True fake: scaffold gap size wrong estimation (extensive) 14225116 14231877 230829 237597 CM091754.1 scf7180002754960 99.37 True fake: scaffold gap size wrong estimation (local) 14231939 14343538 242824 352823 CM091754.1 scf7180002754960 97.51 True fake: scaffold gap size wrong estimation (local) 14343657 14353680 352930 362951 CM091754.1 scf7180002754960 99.65 True indel: indel (> 5bp) 14353829 14462120 363139 468924 CM091754.1 scf7180002754960 97.11 True fake: scaffold gap size wrong estimation (local) 14462273 14469635 469070 476440 CM091754.1 scf7180002754960 99.36 True fake: scaffold gap size wrong estimation (local) 14469631 14488331 478085 496771 CM091754.1 scf7180002754960 99.18 True relocation, scaffold gap is present, inconsistency = -18718 14488591 14601673 515749 628825 CM091754.1 scf7180002754960 99.81 True relocation, scaffold gap is present, inconsistency = -31898 14601954 14730855 661004 789591 CM091754.1 scf7180002754960 99.18 True CONTIG scf7180002754960 789591 misassembled 3755089 3800494 45417 1 CM091755.1 scf7180002754961 99.39 True relocation, scaffold gap is present, inconsistency = -33569 3717609 3755237 116017 78838 CM091755.1 scf7180002754961 98.25 True relocation, scaffold gap is present, inconsistency = -36146 3704930 3716911 164848 152861 CM091755.1 scf7180002754961 99.47 True indel: indel (> 5bp) 3688035 3704717 181705 164984 CM091755.1 scf7180002754961 99.56 True indel: indel (> 5bp) 3659007 3687888 210412 181783 CM091755.1 scf7180002754961 98.19 True relocation, scaffold gap is present, inconsistency = -57652 3606988 3658812 319967 268259 CM091755.1 scf7180002754961 98.86 True fake: scaffold gap size wrong estimation (local) 3367178 3606947 564586 325502 CM091755.1 scf7180002754961 98.93 True relocation, scaffold gap is present, inconsistency = -86202 3346378 3367124 671594 650842 CM091755.1 scf7180002754961 99.63 True fake: scaffold gap size wrong estimation (extensive) 3341590 3346116 683593 679075 CM091755.1 scf7180002754961 99.36 True fake: scaffold gap size wrong estimation (local) 3315142 3341577 714356 687911 CM091755.1 scf7180002754961 99.49 True fake: scaffold gap size wrong estimation (extensive) 3303224 3314632 733418 722046 CM091755.1 scf7180002754961 99.32 True indel: indel (> 5bp) 3292699 3303174 743981 733488 CM091755.1 scf7180002754961 99.34 True fake: scaffold gap size wrong estimation (extensive) 3194520 3292701 850911 752667 CM091755.1 scf7180002754961 99.4 True fake: scaffold gap size wrong estimation (local) 3155126 3194284 892109 852958 CM091755.1 scf7180002754961 99.54 True relocation, scaffold gap is present, inconsistency = -37285 3134319 3154816 950167 929704 CM091755.1 scf7180002754961 99.26 True relocation, inconsistency = 157566 2931981 2976752 994963 950168 CM091755.1 scf7180002754961 99.4 True relocation, scaffold gap is present, inconsistency = -52918 2902613 2931785 1077255 1048077 CM091755.1 scf7180002754961 99.56 True relocation, scaffold gap is present, inconsistency = -28141 2883359 2902608 1124645 1105401 CM091755.1 scf7180002754961 99.65 True fake: scaffold gap size wrong estimation (local) 2872338 2883163 1141183 1130390 CM091755.1 scf7180002754961 99.42 True relocation, scaffold gap is present, inconsistency = -10283 2862628 2872331 1161170 1151473 CM091755.1 scf7180002754961 99.8 True fake: scaffold gap size wrong estimation (local) 2812721 2862335 1213550 1163939 CM091755.1 scf7180002754961 99.62 True relocation, scaffold gap is present, inconsistency = -49589 2804493 2812680 1271367 1263180 CM091755.1 scf7180002754961 99.76 True local misassembly 2801234 2803146 1273280 1271368 CM091755.1 scf7180002754961 99.95 True fake: scaffold gap size wrong estimation (local) 2798873 2800474 1277272 1275671 CM091755.1 scf7180002754961 100.0 True fake: scaffold gap size wrong estimation (local) 2796511 2798518 1279907 1277900 CM091755.1 scf7180002754961 99.25 True CONTIG scf7180002754961 1279907 misassembled 493083 495086 2004 1 CM091764.1 scf7180002754962 99.0 True local misassembly 489487 490741 3259 2005 CM091764.1 scf7180002754962 100.0 True indel: indel (<= 5bp) 488514 489486 4233 3261 CM091764.1 scf7180002754962 99.9 True indel: indel (> 5bp) 487048 488513 5705 4240 CM091764.1 scf7180002754962 100.0 True fake: scaffold gap size wrong estimation (local) 484783 487031 10783 8535 CM091764.1 scf7180002754962 99.91 True fake: scaffold gap size wrong estimation (local) 467490 483681 27719 11529 CM091764.1 scf7180002754962 99.9 True fake: not a misassembly (possible transposable element) 10827814 10833992 33918 27740 CM091765.1 scf7180002754962 99.95 True fake: not a misassembly (possible transposable element) 466575 467365 34865 34074 CM091764.1 scf7180002754962 99.87 True fake: scaffold gap size wrong estimation (local) 454761 466510 47377 35636 CM091764.1 scf7180002754962 99.89 True translocation, scaffold gap is present 10824761 10827559 52840 50037 CM091765.1 scf7180002754962 99.82 True fake: scaffold gap size wrong estimation (local) 10820225 10824286 59020 54959 CM091765.1 scf7180002754962 99.98 True translocation, scaffold gap is present 451593 454536 62953 59902 CM091764.1 scf7180002754962 97.03 True translocation, scaffold gap is present 4221782 4223540 63009 64762 CM091768.1 scf7180002754962 95.92 True relocation, scaffold gap is present, inconsistency = -466050 3757887 3759299 65159 66578 CM091768.1 scf7180002754962 95.43 True translocation, scaffold gap is present 450955 451483 69007 68478 CM091764.1 scf7180002754962 99.25 True fake: scaffold gap size wrong estimation (local) 447152 447657 69533 69028 CM091764.1 scf7180002754962 100.0 True fake: scaffold gap size wrong estimation (local) 445517 447128 71708 70096 CM091764.1 scf7180002754962 99.89 True relocation, inconsistency = 8729 412248 436787 96086 71709 CM091764.1 scf7180002754962 99.19 True translocation, scaffold gap is present 8739987 8750042 96107 106159 CM091762.1 scf7180002754962 99.37 True translocation, scaffold gap is present 407255 412071 116061 111388 CM091764.1 scf7180002754962 98.94 True translocation, scaffold gap is present 8750027 8754742 120004 124717 CM091762.1 scf7180002754962 99.22 True fake: scaffold gap size wrong estimation (extensive) 8754729 8771802 132354 149467 CM091762.1 scf7180002754962 99.28 True fake: scaffold gap size wrong estimation (local) 8772193 8793219 149804 170827 CM091762.1 scf7180002754962 99.06 True relocation, scaffold gap is present, inconsistency = -16913 8793209 8806874 187730 201390 CM091762.1 scf7180002754962 99.29 True indel: indel (<= 5bp) 8806957 8816228 201469 210757 CM091762.1 scf7180002754962 99.16 True fake: scaffold gap size wrong estimation (local) 8820645 8849381 215209 243933 CM091762.1 scf7180002754962 99.46 True fake: scaffold gap size wrong estimation (extensive) 8849780 8872092 253850 276138 CM091762.1 scf7180002754962 99.34 True fake: scaffold gap size wrong estimation (local) 8872224 8934400 276253 337123 CM091762.1 scf7180002754962 96.44 True fake: scaffold gap size wrong estimation (local) 8934792 8945052 338021 348269 CM091762.1 scf7180002754962 99.4 True relocation, scaffold gap is present, inconsistency = -10226 8945086 8980788 358529 394342 CM091762.1 scf7180002754962 99.51 True fake: scaffold gap size wrong estimation (local) 8981562 8997291 394660 410397 CM091762.1 scf7180002754962 99.08 True indel: indel (> 5bp) 8997499 9009039 410551 422080 CM091762.1 scf7180002754962 99.39 True relocation, scaffold gap is present, inconsistency = -13090 9009053 9088969 435184 515211 CM091762.1 scf7180002754962 99.46 True indel: stretch of mismatches 9089055 9167989 515297 594179 CM091762.1 scf7180002754962 99.31 True CONTIG scf7180002754962 639712 misassembled 2771708 2783946 12220 1 CM091763.1 scf7180002754963 99.08 True fake: scaffold gap size wrong estimation (local) 2708052 2727261 76225 57026 CM091763.1 scf7180002754963 99.59 True fake: scaffold gap size wrong estimation (local) 2605979 2707760 178609 76804 CM091763.1 scf7180002754963 99.7 True translocation 3604756 3640582 214470 178610 CM091766.1 scf7180002754963 99.3 True relocation, scaffold gap is present, inconsistency = -136092 3507495 3604772 447889 350546 CM091766.1 scf7180002754963 99.52 True indel: indel (> 5bp) 3463999 3507374 491434 448053 CM091766.1 scf7180002754963 99.53 True indel: indel (> 5bp) 3416396 3463797 539042 491609 CM091766.1 scf7180002754963 99.52 True fake: scaffold gap size wrong estimation (local) 3408339 3410398 549412 547352 CM091766.1 scf7180002754963 98.97 True local misassembly 3400744 3403818 552489 549413 CM091766.1 scf7180002754963 98.64 True fake: not a misassembly (possible transposable element) 3396444 3398660 556993 559209 CM091766.1 scf7180002754963 99.46 True fake: not a misassembly (possible transposable element) 3398712 3400467 561440 559695 CM091766.1 scf7180002754963 98.92 True fake: scaffold gap size wrong estimation (local) 3391798 3394253 563916 561461 CM091766.1 scf7180002754963 99.43 True CONTIG scf7180002754963 563916 misassembled 8719308 8763321 44023 1 CM091759.1 scf7180002754964 99.81 True relocation, scaffold gap is present, inconsistency = -33797 8694552 8719330 102087 77798 CM091759.1 scf7180002754964 97.36 True relocation, scaffold gap is present, inconsistency = -18128 8686270 8694551 128512 120216 CM091759.1 scf7180002754964 99.51 True fake: scaffold gap size wrong estimation (local) 8684995 8686148 131451 130298 CM091759.1 scf7180002754964 99.74 True indel: indel (> 5bp) 8684165 8684752 132270 131683 CM091759.1 scf7180002754964 100.0 True indel: indel (<= 5bp) 8683207 8684161 133225 132271 CM091759.1 scf7180002754964 99.9 True fake: scaffold gap size wrong estimation (local) 8682563 8683206 133890 133247 CM091759.1 scf7180002754964 96.43 True indel: indel (<= 5bp) 8680775 8682560 135676 133891 CM091759.1 scf7180002754964 99.94 True local misassembly 8676902 8680025 139606 136483 CM091759.1 scf7180002754964 99.9 True fake: scaffold gap size wrong estimation (local) 8675006 8676513 141497 139990 CM091759.1 scf7180002754964 99.54 True fake: scaffold gap size wrong estimation (local) 8673787 8674521 142747 142013 CM091759.1 scf7180002754964 100.0 True indel: indel (<= 5bp) 8671952 8673786 144583 142749 CM091759.1 scf7180002754964 98.69 True local misassembly 8668163 8671951 150354 146566 CM091759.1 scf7180002754964 99.5 True fake: scaffold gap size wrong estimation (local) 8663149 8666492 155357 152003 CM091759.1 scf7180002754964 99.28 True fake: not a misassembly (possible transposable element) 16564806 16566382 155379 156956 CM091753.1 scf7180002754964 99.34 True fake: not a misassembly (possible transposable element) 8656208 8662552 163312 156957 CM091759.1 scf7180002754964 99.4 True local misassembly 8650452 8656143 169271 163579 CM091759.1 scf7180002754964 99.82 True fake: scaffold gap size wrong estimation (extensive) 8642994 8650154 186287 179107 CM091759.1 scf7180002754964 99.4 True fake: scaffold gap size wrong estimation (local) 8540752 8642909 288620 186370 CM091759.1 scf7180002754964 99.5 True relocation, scaffold gap is present, inconsistency = -17544 8495837 8540752 351061 306164 CM091759.1 scf7180002754964 99.49 True relocation, scaffold gap is present, inconsistency = -23186 8492761 8495833 377330 374251 CM091759.1 scf7180002754964 99.42 True fake: scaffold gap size wrong estimation (local) 8460955 8492705 409138 377393 CM091759.1 scf7180002754964 99.53 True fake: scaffold gap size wrong estimation (local) 8419500 8460849 451022 409658 CM091759.1 scf7180002754964 99.59 True relocation, scaffold gap is present, inconsistency = -24683 8389810 8419320 515712 475885 CM091759.1 scf7180002754964 95.25 True indel: indel (> 5bp) 8369172 8389799 536330 515743 CM091759.1 scf7180002754964 99.15 True indel: indel (> 5bp) 8351123 8369072 554393 536445 CM091759.1 scf7180002754964 99.34 True relocation, inconsistency = 4273748 4073589 4077374 558183 554394 CM091759.1 scf7180002754964 99.43 True fake: scaffold gap size wrong estimation (local) 4040033 4073583 593552 560276 CM091759.1 scf7180002754964 97.87 True CONTIG scf7180002754964 593552 misassembled 3928308 3929199 1 892 CM091757.1 scf7180002754965 99.78 True indel: indel (<= 5bp) 3929200 3929955 898 1653 CM091757.1 scf7180002754965 99.74 True indel: indel (<= 5bp) 3930022 3930963 1718 2659 CM091757.1 scf7180002754965 99.79 True indel: indel (<= 5bp) 3931364 3933443 3058 5137 CM091757.1 scf7180002754965 99.76 True indel: indel (<= 5bp) 3933444 3935806 5140 7502 CM091757.1 scf7180002754965 99.79 True local misassembly 3936445 3936998 8136 8689 CM091757.1 scf7180002754965 99.82 True indel: indel (<= 5bp) 3936999 3937507 8691 9199 CM091757.1 scf7180002754965 99.8 True indel: indel (> 5bp) 3937677 3938910 9377 10610 CM091757.1 scf7180002754965 99.43 True indel: indel (> 5bp) 3938911 3939454 10620 11163 CM091757.1 scf7180002754965 100.0 True fake: scaffold gap size wrong estimation (local) 3940560 3941675 12271 13386 CM091757.1 scf7180002754965 99.82 True indel: indel (<= 5bp) 3941677 3942586 13387 14296 CM091757.1 scf7180002754965 99.78 True indel: indel (<= 5bp) 3942587 3943706 14298 15417 CM091757.1 scf7180002754965 99.64 True indel: indel (> 5bp) 3943777 3944696 15472 16391 CM091757.1 scf7180002754965 97.83 True indel: indel (<= 5bp) 3944698 3945859 16392 17553 CM091757.1 scf7180002754965 100.0 True indel: indel (> 5bp) 3945860 3946551 17564 18255 CM091757.1 scf7180002754965 99.86 True indel: indel (<= 5bp) 3946741 3947733 18444 19436 CM091757.1 scf7180002754965 99.8 True indel: indel (<= 5bp) 3947734 3948568 19438 20272 CM091757.1 scf7180002754965 99.76 True indel: indel (<= 5bp) 3948569 3949608 20274 21313 CM091757.1 scf7180002754965 99.52 True indel: indel (> 5bp) 3949913 3951417 21610 23114 CM091757.1 scf7180002754965 99.73 True indel: indel (> 5bp) 3951459 3952057 23149 23747 CM091757.1 scf7180002754965 99.5 True indel: indel (<= 5bp) 3952059 3952977 23748 24666 CM091757.1 scf7180002754965 99.35 True fake: scaffold gap size wrong estimation (local) 3952978 3954146 26695 27863 CM091757.1 scf7180002754965 99.57 True fake: scaffold gap size wrong estimation (local) 3957026 3971466 29958 44183 CM091757.1 scf7180002754965 97.05 True fake: scaffold gap size wrong estimation (local) 3971949 3985709 48402 61852 CM091757.1 scf7180002754965 96.51 True local misassembly 3985963 4014863 61925 90342 CM091757.1 scf7180002754965 97.59 True fake: scaffold gap size wrong estimation (local) 4015120 4045391 94343 124041 CM091757.1 scf7180002754965 97.47 True fake: scaffold gap size wrong estimation (local) 4045518 4050083 125639 130189 CM091757.1 scf7180002754965 98.93 True fake: scaffold gap size wrong estimation (local) 4050422 4093844 130554 173978 CM091757.1 scf7180002754965 99.62 True relocation, scaffold gap is present, inconsistency = -40623 4093987 4144858 214744 265705 CM091757.1 scf7180002754965 99.54 True relocation, scaffold gap is present, inconsistency = -40126 4144969 4168645 305942 329653 CM091757.1 scf7180002754965 99.74 True relocation, scaffold gap is present, inconsistency = -22001 4168561 4213942 351570 396974 CM091757.1 scf7180002754965 99.48 True relocation, scaffold gap is present, inconsistency = -14911 4214097 4262399 412040 460220 CM091757.1 scf7180002754965 99.1 True indel: indel (<= 5bp) 4262477 4289249 460301 487045 CM091757.1 scf7180002754965 99.46 True CONTIG scf7180002754965 487045 misassembled 704562 794749 89663 1 CM091756.1 scf7180002754966 98.85 True fake: scaffold gap size wrong estimation (local) 694389 704569 100403 90200 CM091756.1 scf7180002754966 99.47 True fake: scaffold gap size wrong estimation (local) 690396 693008 104399 101789 CM091756.1 scf7180002754966 99.01 True fake: scaffold gap size wrong estimation (local) 679647 690373 117074 106322 CM091756.1 scf7180002754966 98.93 True fake: scaffold gap size wrong estimation (local) 658823 679484 137916 117237 CM091756.1 scf7180002754966 99.56 True fake: scaffold gap size wrong estimation (local) 524794 658247 275302 142052 CM091756.1 scf7180002754966 99.22 True relocation, scaffold gap is present, inconsistency = -28543 493414 524794 335270 303845 CM091756.1 scf7180002754966 98.98 True relocation, scaffold gap is present, inconsistency = -20012 486461 492930 362238 355766 CM091756.1 scf7180002754966 99.55 True fake: scaffold gap size wrong estimation (local) 472805 486357 380649 367640 CM091756.1 scf7180002754966 95.9 True indel: stretch of mismatches 451807 472804 401680 380650 CM091756.1 scf7180002754966 99.15 True fake: scaffold gap size wrong estimation (local) 374155 451531 479083 401949 CM091756.1 scf7180002754966 98.94 True fake: scaffold gap size wrong estimation (extensive) 350537 374057 510089 486552 CM091756.1 scf7180002754966 99.37 True indel: indel (> 5bp) 328668 350512 532057 510136 CM091756.1 scf7180002754966 99.26 True fake: scaffold gap size wrong estimation (local) 302027 328384 561593 535227 CM091756.1 scf7180002754966 99.75 True relocation, scaffold gap is present, inconsistency = -26496 291795 301967 598361 588149 CM091756.1 scf7180002754966 99.4 True fake: scaffold gap size wrong estimation (local) 265316 291262 627362 601438 CM091756.1 scf7180002754966 99.47 True relocation, scaffold gap is present, inconsistency = -20708 251369 264891 662025 648495 CM091756.1 scf7180002754966 99.57 True fake: scaffold gap size wrong estimation (local) 223013 251277 690432 662114 CM091756.1 scf7180002754966 99.21 True indel: indel (> 5bp) 189681 222578 723676 690847 CM091756.1 scf7180002754966 97.69 True fake: scaffold gap size wrong estimation (local) 186892 189006 731027 728899 CM091756.1 scf7180002754966 98.69 True fake: scaffold gap size wrong estimation (local) 121281 186883 798275 733181 CM091756.1 scf7180002754966 98.14 True fake: scaffold gap size wrong estimation (extensive) 105844 121256 823668 808212 CM091756.1 scf7180002754966 99.68 True fake: scaffold gap size wrong estimation (local) 86231 105757 843277 823769 CM091756.1 scf7180002754966 99.52 True relocation, scaffold gap is present, inconsistency = -15368 36926 86212 907245 858664 CM091756.1 scf7180002754966 98.19 True indel: stretch of mismatches 19247 36925 925059 907246 CM091756.1 scf7180002754966 99.27 True CONTIG scf7180002754966 930287 misassembled 13517971 13521969 203 4200 CM091760.1 scf7180002754967 99.8 True inversion, scaffold gap is present 13445688 13517380 74635 4221 CM091760.1 scf7180002754967 97.3 True indel: indel (> 5bp) 13410759 13445619 109485 74636 CM091760.1 scf7180002754967 99.03 True indel: indel (> 5bp) 13365948 13410535 153435 109778 CM091760.1 scf7180002754967 97.13 True translocation 12919852 12924443 153436 158054 CM091754.1 scf7180002754967 98.49 True indel: indel (> 5bp) 12924677 12926925 158275 160523 CM091754.1 scf7180002754967 99.51 True fake: scaffold gap size wrong estimation (local) 12928028 12929030 161172 162174 CM091754.1 scf7180002754967 99.0 True local misassembly 12929863 12931183 163002 164322 CM091754.1 scf7180002754967 99.62 True fake: scaffold gap size wrong estimation (local) 12931786 13017037 165024 249967 CM091754.1 scf7180002754967 98.83 True fake: scaffold gap size wrong estimation (local) 13017868 13130537 250026 362861 CM091754.1 scf7180002754967 98.81 True indel: indel (> 5bp) 13130651 13239398 362916 471125 CM091754.1 scf7180002754967 98.8 True relocation, scaffold gap is present, inconsistency = -93668 13190390 13190983 515785 516401 CM091754.1 scf7180002754967 99.39 True fake: scaffold gap size wrong estimation (local) 13239375 13288576 564946 613966 CM091754.1 scf7180002754967 98.0 True local misassembly 13290454 13293879 615058 618493 CM091754.1 scf7180002754967 99.21 True local misassembly 13296436 13300968 618868 623382 CM091754.1 scf7180002754967 98.94 True indel: indel (<= 5bp) 13301028 13317725 623437 639885 CM091754.1 scf7180002754967 97.45 True local misassembly 13318653 13319378 640444 641169 CM091754.1 scf7180002754967 99.04 True indel: indel (<= 5bp) 13319764 13320378 641557 642171 CM091754.1 scf7180002754967 99.84 True indel: indel (<= 5bp) 13320477 13322892 642272 644687 CM091754.1 scf7180002754967 99.63 True local misassembly 13323718 13326418 645290 647987 CM091754.1 scf7180002754967 99.04 True indel: indel (> 5bp) 13326821 13383268 648307 704358 CM091754.1 scf7180002754967 97.23 True fake: scaffold gap size wrong estimation (local) 13383314 13472886 704414 793986 CM091754.1 scf7180002754967 99.87 True local misassembly 13472987 13478092 795650 800854 CM091754.1 scf7180002754967 98.06 True relocation, inconsistency = -18333 13478193 13494177 819288 835228 CM091754.1 scf7180002754967 99.19 True local misassembly 13494278 13520766 836274 862765 CM091754.1 scf7180002754967 99.49 True local misassembly 13520867 13524201 863518 866866 CM091754.1 scf7180002754967 98.69 True local misassembly 13529572 13555516 874160 900086 CM091754.1 scf7180002754967 99.27 True fake: scaffold gap size wrong estimation (local) 13557159 13584238 904566 931641 CM091754.1 scf7180002754967 99.29 True fake: scaffold gap size wrong estimation (local) 13584142 13663264 932096 1011359 CM091754.1 scf7180002754967 99.29 True indel: indel (> 5bp) 13663339 13737186 1011383 1084943 CM091754.1 scf7180002754967 98.75 True translocation 9692130 9760291 1085037 1151612 CM091759.1 scf7180002754967 95.34 True fake: scaffold gap size wrong estimation (local) 9760409 9768307 1151701 1159631 CM091759.1 scf7180002754967 99.12 True fake: scaffold gap size wrong estimation (local) 9768410 9776035 1159758 1167387 CM091759.1 scf7180002754967 98.95 True fake: scaffold gap size wrong estimation (local) 9776137 9781639 1167487 1172999 CM091759.1 scf7180002754967 99.55 True CONTIG scf7180002754967 1172999 misassembled 6589201 6780415 336 191614 CM091759.1 scf7180002754968 99.68 True fake: scaffold gap size wrong estimation (local) 6780527 6820399 191701 231608 CM091759.1 scf7180002754968 99.86 True relocation, scaffold gap is present, inconsistency = -23403 6820048 6855316 254660 289179 CM091759.1 scf7180002754968 97.75 True relocation, scaffold gap is present, inconsistency = -33347 6855368 6868641 322578 335839 CM091759.1 scf7180002754968 99.61 True indel: indel (> 5bp) 6868732 6895899 335892 363082 CM091759.1 scf7180002754968 99.58 True fake: scaffold gap size wrong estimation (local) 6898008 6938044 365306 405456 CM091759.1 scf7180002754968 97.1 True fake: scaffold gap size wrong estimation (local) 6938818 6941109 407768 410059 CM091759.1 scf7180002754968 98.6 True indel: indel (> 5bp) 6941123 6942564 410060 411501 CM091759.1 scf7180002754968 99.38 True fake: scaffold gap size wrong estimation (local) 6943995 6944999 412952 413956 CM091759.1 scf7180002754968 100.0 True indel: indel (<= 5bp) 6945001 6947263 413957 416219 CM091759.1 scf7180002754968 99.56 True indel: indel (<= 5bp) 6947265 6948173 416220 417128 CM091759.1 scf7180002754968 99.0 True translocation 8350126 8412581 417129 478792 CM091755.1 scf7180002754968 97.98 True fake: scaffold gap size wrong estimation (local) 8413063 8425699 482162 494789 CM091755.1 scf7180002754968 99.45 True fake: scaffold gap size wrong estimation (local) 8425615 8479134 497900 551439 CM091755.1 scf7180002754968 99.17 True indel: indel (> 5bp) 8479176 8535575 551501 607907 CM091755.1 scf7180002754968 98.69 True fake: scaffold gap size wrong estimation (local) 8536088 8576215 608579 648652 CM091755.1 scf7180002754968 98.66 True CONTIG scf7180002754968 648652 misassembled 2548953 2566138 17187 1 CM091762.1 scf7180002754969 99.97 True relocation, scaffold gap is present, inconsistency = -7748 2555609 2556132 18312 17756 CM091762.1 scf7180002754969 97.22 True fake: not a misassembly (possible transposable element) 2545438 2548954 22132 25650 CM091762.1 scf7180002754969 99.86 True fake: not a misassembly (possible transposable element) 2535199 2545206 39224 29220 CM091762.1 scf7180002754969 99.94 True fake: scaffold gap size wrong estimation (local) 2520087 2534964 54326 39461 CM091762.1 scf7180002754969 99.87 True fake: scaffold gap size wrong estimation (local) 2346994 2518968 226755 55420 CM091762.1 scf7180002754969 99.42 True fake: scaffold gap size wrong estimation (local) 2320786 2346850 256237 230170 CM091762.1 scf7180002754969 99.93 True relocation, scaffold gap is present, inconsistency = -25350 2289734 2320708 312348 281665 CM091762.1 scf7180002754969 98.68 True fake: scaffold gap size wrong estimation (local) 2200085 2289706 402328 312825 CM091762.1 scf7180002754969 99.67 True relocation, scaffold gap is present, inconsistency = -20031 2176993 2200065 445458 422379 CM091762.1 scf7180002754969 99.65 True relocation, scaffold gap is present, inconsistency = -23019 2036988 2176955 608460 468515 CM091762.1 scf7180002754969 99.67 True relocation, scaffold gap is present, inconsistency = -38366 1999744 2036825 683891 646989 CM091762.1 scf7180002754969 99.02 True relocation, scaffold gap is present, inconsistency = -23673 1982109 2000338 725290 706970 CM091762.1 scf7180002754969 96.74 True fake: scaffold gap size wrong estimation (local) 1877855 1981673 829595 725762 CM091762.1 scf7180002754969 99.65 True relocation, scaffold gap is present, inconsistency = -42526 1862715 1877561 887275 872415 CM091762.1 scf7180002754969 99.72 True relocation, scaffold gap is present, inconsistency = -13976 1819690 1862482 944288 901484 CM091762.1 scf7180002754969 99.75 True relocation, scaffold gap is present, inconsistency = -26961 1771636 1819399 1019293 971540 CM091762.1 scf7180002754969 99.58 True relocation, scaffold gap is present, inconsistency = -36846 1767275 1771635 1060515 1056140 CM091762.1 scf7180002754969 99.5 True fake: scaffold gap size wrong estimation (local) 1742371 1767145 1085394 1060597 CM091762.1 scf7180002754969 99.22 True relocation, scaffold gap is present, inconsistency = -23773 1712314 1742318 1139171 1109220 CM091762.1 scf7180002754969 99.53 True relocation, scaffold gap is present, inconsistency = -12617 1696873 1711214 1167234 1152888 CM091762.1 scf7180002754969 99.78 True CONTIG scf7180002754969 1181415 misassembled 2976594 2981574 7 4982 CM091755.1 scf7180002754970 99.66 True translocation, scaffold gap is present 11191105 11195589 9489 5003 CM091765.1 scf7180002754970 99.93 True translocation, scaffold gap is present 15809794 15815283 9510 14999 CM091757.1 scf7180002754970 100.0 True translocation, scaffold gap is present 2981548 3019950 15020 53440 CM091755.1 scf7180002754970 99.51 True translocation 1776619 1789041 65890 53441 CM091753.1 scf7180002754970 98.68 True translocation, scaffold gap is present 7964335 8112478 214045 65911 CM091757.1 scf7180002754970 99.31 True relocation, inconsistency = 29438 7912816 7934546 236186 214396 CM091757.1 scf7180002754970 99.01 True local misassembly 7864931 7912637 283324 236476 CM091757.1 scf7180002754970 97.51 True indel: indel (> 5bp) 7814429 7864782 333121 283437 CM091757.1 scf7180002754970 97.53 True indel: stretch of mismatches 7794310 7814428 353112 333122 CM091757.1 scf7180002754970 98.73 True relocation, scaffold gap is present, inconsistency = -16872 7792323 7794307 371967 369987 CM091757.1 scf7180002754970 99.55 True relocation, scaffold gap is present, inconsistency = -36546 7723615 7792296 476873 408540 CM091757.1 scf7180002754970 98.81 True fake: scaffold gap size wrong estimation (local) 7628669 7723534 571810 476943 CM091757.1 scf7180002754970 98.93 True relocation, scaffold gap is present, inconsistency = -33125 7627643 7628336 605961 605268 CM091757.1 scf7180002754970 99.42 True indel: indel (<= 5bp) 7626228 7627206 607372 606394 CM091757.1 scf7180002754970 99.18 True indel: indel (<= 5bp) 7624598 7626227 609003 607374 CM091757.1 scf7180002754970 99.69 True indel: indel (<= 5bp) 7623521 7624597 610084 609008 CM091757.1 scf7180002754970 99.35 True indel: indel (<= 5bp) 7622107 7623518 611496 610085 CM091757.1 scf7180002754970 99.79 True indel: indel (<= 5bp) 7621031 7622106 612573 611498 CM091757.1 scf7180002754970 98.98 True local misassembly 7609332 7620434 623754 612650 CM091757.1 scf7180002754970 98.65 True indel: indel (> 5bp) 7598660 7609246 634386 623855 CM091757.1 scf7180002754970 98.47 True relocation, scaffold gap is present, inconsistency = -28759 7578707 7598659 683231 663146 CM091757.1 scf7180002754970 98.44 True indel: indel (> 5bp) 7542141 7578610 719731 683315 CM091757.1 scf7180002754970 99.02 True indel: indel (> 5bp) 7506422 7542065 755441 719784 CM091757.1 scf7180002754970 99.07 True indel: indel (> 5bp) 7409689 7506402 852322 755454 CM091757.1 scf7180002754970 99.4 True indel: indel (<= 5bp) 7404789 7409642 857108 852372 CM091757.1 scf7180002754970 97.0 True indel: indel (> 5bp) 7285082 7404579 976443 857396 CM091757.1 scf7180002754970 99.13 True indel: indel (> 5bp) 7282958 7284970 978651 976588 CM091757.1 scf7180002754970 97.0 True indel: indel (> 5bp) 7258983 7282821 1002486 978833 CM091757.1 scf7180002754970 98.37 True relocation, scaffold gap is present, inconsistency = -26038 7245267 7259172 1042264 1028335 CM091757.1 scf7180002754970 98.89 True indel: indel (<= 5bp) 7210791 7245181 1076342 1042347 CM091757.1 scf7180002754970 97.81 True fake: scaffold gap size wrong estimation (extensive) 7178529 7210789 1116873 1084598 CM091757.1 scf7180002754970 99.41 True indel: indel (> 5bp) 7176697 7178469 1118722 1116944 CM091757.1 scf7180002754970 99.33 True relocation, scaffold gap is present, inconsistency = -23070 7157445 7176332 1161058 1142157 CM091757.1 scf7180002754970 99.66 True CONTIG scf7180002754970 1172775 misassembled 4321702 4353386 1 31328 CM091757.1 scf7180002754971 98.36 True relocation, scaffold gap is present, inconsistency = -21663 4353492 4478579 53097 178266 CM091757.1 scf7180002754971 99.61 True relocation, scaffold gap is present, inconsistency = -19856 4478463 4502911 198006 222452 CM091757.1 scf7180002754971 99.65 True local misassembly 4506493 4512549 222453 228448 CM091757.1 scf7180002754971 98.57 True relocation, scaffold gap is present, inconsistency = -30465 4512568 4551306 258932 297701 CM091757.1 scf7180002754971 99.52 True indel: indel (> 5bp) 4551422 4588019 297834 334446 CM091757.1 scf7180002754971 99.54 True local misassembly 4588514 4706760 334487 452716 CM091757.1 scf7180002754971 99.52 True relocation, scaffold gap is present, inconsistency = -68137 4706738 4738314 520831 552114 CM091757.1 scf7180002754971 98.61 True relocation, scaffold gap is present, inconsistency = -23296 4738316 4835658 575412 672896 CM091757.1 scf7180002754971 99.46 True indel: indel (> 5bp) 4835737 4842513 672994 679767 CM091757.1 scf7180002754971 99.57 True relocation, scaffold gap is present, inconsistency = -42333 4842621 4879504 722208 759083 CM091757.1 scf7180002754971 99.47 True relocation, scaffold gap is present, inconsistency = -37074 4879368 4914547 796021 831194 CM091757.1 scf7180002754971 99.48 True relocation, scaffold gap is present, inconsistency = -17609 4914544 5247741 848800 1181091 CM091757.1 scf7180002754971 99.22 True relocation, scaffold gap is present, inconsistency = -70198 5247765 5318342 1251313 1321967 CM091757.1 scf7180002754971 99.55 True relocation, scaffold gap is present, inconsistency = -11405 5318374 5321091 1333404 1336121 CM091757.1 scf7180002754971 99.74 True indel: indel (<= 5bp) 5321092 5323338 1336123 1338369 CM091757.1 scf7180002754971 99.6 True indel: indel (<= 5bp) 5323339 5323954 1338371 1338986 CM091757.1 scf7180002754971 99.84 True indel: indel (<= 5bp) 5324261 5325161 1339295 1340195 CM091757.1 scf7180002754971 100.0 True indel: indel (<= 5bp) 5325162 5326391 1340197 1341426 CM091757.1 scf7180002754971 99.76 True local misassembly 5327147 5328067 1342181 1343101 CM091757.1 scf7180002754971 99.89 True indel: indel (<= 5bp) 5328068 5328958 1343103 1343993 CM091757.1 scf7180002754971 99.55 True indel: indel (> 5bp) 5328974 5330482 1344020 1345528 CM091757.1 scf7180002754971 100.0 True indel: indel (<= 5bp) 5330483 5331648 1345530 1346695 CM091757.1 scf7180002754971 99.66 True indel: indel (> 5bp) 5331664 5333405 1346696 1348437 CM091757.1 scf7180002754971 98.79 True indel: indel (<= 5bp) 5333407 5335536 1348438 1350567 CM091757.1 scf7180002754971 99.91 True indel: indel (<= 5bp) 5335537 5336036 1350570 1351069 CM091757.1 scf7180002754971 99.8 True indel: indel (> 5bp) 5336304 5337361 1351324 1352381 CM091757.1 scf7180002754971 99.34 True indel: indel (<= 5bp) 5337362 5337862 1352383 1352883 CM091757.1 scf7180002754971 100.0 True indel: indel (<= 5bp) 5338311 5339512 1353334 1354535 CM091757.1 scf7180002754971 100.0 True indel: indel (<= 5bp) 5339514 5340864 1354536 1355886 CM091757.1 scf7180002754971 99.93 True indel: indel (<= 5bp) 5340868 5342332 1355887 1357351 CM091757.1 scf7180002754971 99.59 True indel: indel (<= 5bp) 5342333 5346928 1357353 1361948 CM091757.1 scf7180002754971 99.87 True indel: indel (> 5bp) 5346929 5350070 1361957 1365098 CM091757.1 scf7180002754971 99.71 True indel: indel (<= 5bp) 5350079 5350836 1365106 1365863 CM091757.1 scf7180002754971 99.74 True indel: indel (<= 5bp) 5350837 5354906 1365866 1369935 CM091757.1 scf7180002754971 99.46 True fake: scaffold gap size wrong estimation (local) 5355156 5359108 1370184 1374136 CM091757.1 scf7180002754971 98.99 True indel: indel (<= 5bp) 5359109 5360320 1374141 1375352 CM091757.1 scf7180002754971 99.67 True indel: indel (> 5bp) 5360586 5365722 1375612 1380748 CM091757.1 scf7180002754971 99.75 True indel: indel (<= 5bp) 5365723 5366534 1380751 1381562 CM091757.1 scf7180002754971 99.88 True local misassembly 5370225 5377033 1381563 1388371 CM091757.1 scf7180002754971 99.82 True indel: indel (<= 5bp) 5377095 5379713 1388431 1391049 CM091757.1 scf7180002754971 99.96 True indel: indel (<= 5bp) 5379714 5380739 1391051 1392076 CM091757.1 scf7180002754971 99.61 True indel: indel (<= 5bp) 5380740 5381820 1392078 1393158 CM091757.1 scf7180002754971 99.72 True indel: indel (<= 5bp) 5381822 5382677 1393159 1394014 CM091757.1 scf7180002754971 99.88 True local misassembly 5383273 5385566 1394609 1396902 CM091757.1 scf7180002754971 99.74 True indel: indel (<= 5bp) 5385568 5386811 1396903 1398146 CM091757.1 scf7180002754971 100.0 True indel: indel (<= 5bp) 5387139 5390534 1398479 1401874 CM091757.1 scf7180002754971 99.88 True indel: indel (<= 5bp) 5390536 5391537 1401875 1402876 CM091757.1 scf7180002754971 99.5 True indel: indel (<= 5bp) 5391952 5395008 1403292 1406348 CM091757.1 scf7180002754971 99.8 True indel: indel (<= 5bp) 5395009 5396982 1406350 1408323 CM091757.1 scf7180002754971 99.85 True indel: indel (> 5bp) 5396989 5398785 1408353 1410149 CM091757.1 scf7180002754971 99.78 True indel: indel (<= 5bp) 5398804 5399987 1410170 1411353 CM091757.1 scf7180002754971 100.0 True indel: indel (<= 5bp) 5399990 5401727 1411354 1413091 CM091757.1 scf7180002754971 99.83 True fake: scaffold gap size wrong estimation (extensive) 5402068 5403479 1422048 1423459 CM091757.1 scf7180002754971 99.86 True local misassembly 5404989 5407446 1424969 1427426 CM091757.1 scf7180002754971 99.55 True indel: indel (<= 5bp) 5407448 5408725 1427427 1428704 CM091757.1 scf7180002754971 99.92 True fake: scaffold gap size wrong estimation (local) 5408726 5410002 1434518 1435794 CM091757.1 scf7180002754971 99.3 True indel: indel (<= 5bp) 5410003 5412376 1435796 1438169 CM091757.1 scf7180002754971 99.62 True indel: indel (<= 5bp) 5412377 5412979 1438171 1438773 CM091757.1 scf7180002754971 99.83 True indel: indel (<= 5bp) 5412981 5414879 1438774 1440672 CM091757.1 scf7180002754971 99.89 True fake: scaffold gap size wrong estimation (local) 5415520 5444954 1446052 1475474 CM091757.1 scf7180002754971 99.61 True translocation, scaffold gap is present 3977353 4007603 1476360 1506543 CM091764.1 scf7180002754971 99.29 True fake: not a misassembly (possible transposable element) 5444931 5447474 1506863 1509400 CM091757.1 scf7180002754971 99.21 True fake: not a misassembly (possible transposable element) 4007387 4072075 1511048 1575719 CM091764.1 scf7180002754971 99.77 True translocation, scaffold gap is present 5447483 5449992 1575740 1578251 CM091757.1 scf7180002754971 99.76 True translocation, scaffold gap is present 4072092 4103710 1642077 1673722 CM091764.1 scf7180002754971 99.82 True relocation, scaffold gap is present, inconsistency = -11966 4104138 4119551 1686116 1701524 CM091764.1 scf7180002754971 99.75 True CONTIG scf7180002754971 1704925 misassembled 11706478 11733322 162100 135480 CM091764.1 scf7180002754972 98.87 True relocation, scaffold gap is present, inconsistency = -305119 11686411 11699768 487293 473929 CM091764.1 scf7180002754972 99.74 True local misassembly 11672882 11685798 502352 489403 CM091764.1 scf7180002754972 99.38 True local misassembly 11641154 11669188 530368 502353 CM091764.1 scf7180002754972 99.46 True indel: indel (> 5bp) 11459503 11640966 711643 530573 CM091764.1 scf7180002754972 99.31 True relocation, scaffold gap is present, inconsistency = -10482 11423807 11458877 757597 722751 CM091764.1 scf7180002754972 98.5 True fake: scaffold gap size wrong estimation (local) 11416161 11423348 765713 758528 CM091764.1 scf7180002754972 99.72 True fake: scaffold gap size wrong estimation (local) 11333411 11416042 848599 765848 CM091764.1 scf7180002754972 99.48 True fake: scaffold gap size wrong estimation (local) 11311343 11333039 871549 849775 CM091764.1 scf7180002754972 99.08 True fake: scaffold gap size wrong estimation (local) 11303354 11311336 881102 873453 CM091764.1 scf7180002754972 95.18 True fake: scaffold gap size wrong estimation (local) 11253843 11303106 938867 882378 CM091764.1 scf7180002754972 98.98 True fake: scaffold gap size wrong estimation (local) 11228496 11253819 968624 943633 CM091764.1 scf7180002754972 98.11 True relocation, scaffold gap is present, inconsistency = -10082 11188517 11228505 1018460 978697 CM091764.1 scf7180002754972 98.69 True fake: scaffold gap size wrong estimation (local) 11131539 11187271 1078442 1022636 CM091764.1 scf7180002754972 99.28 True indel: indel (<= 5bp) 11118867 11131510 1090936 1078476 CM091764.1 scf7180002754972 97.98 True indel: indel (> 5bp) 11057783 11118855 1152068 1090978 CM091764.1 scf7180002754972 99.4 True relocation, scaffold gap is present, inconsistency = -21954 10995094 11057797 1236687 1174008 CM091764.1 scf7180002754972 99.45 True relocation, scaffold gap is present, inconsistency = -48966 10990496 10994837 1290252 1285910 CM091764.1 scf7180002754972 99.88 True CONTIG scf7180002754972 1290252 misassembled 9785317 9789115 3665 1 CM091763.1 scf7180002754973 95.89 True local misassembly 9779911 9784782 8614 3850 CM091763.1 scf7180002754973 96.58 True fake: scaffold gap size wrong estimation (local) 9768577 9779129 19627 9336 CM091763.1 scf7180002754973 95.41 True indel: indel (> 5bp) 9745404 9768447 42472 19777 CM091763.1 scf7180002754973 97.15 True relocation, scaffold gap is present, inconsistency = -13431 9742993 9744678 58317 56629 CM091763.1 scf7180002754973 99.05 True fake: scaffold gap size wrong estimation (local) 9655623 9742821 144957 58456 CM091763.1 scf7180002754973 98.43 True fake: scaffold gap size wrong estimation (local) 9569359 9645300 231264 155277 CM091763.1 scf7180002754973 99.47 True relocation, scaffold gap is present, inconsistency = -75671 9479010 9569270 396534 307024 CM091763.1 scf7180002754973 97.24 True indel: indel (> 5bp) 9390918 9478977 484646 396561 CM091763.1 scf7180002754973 99.51 True relocation, scaffold gap is present, inconsistency = -123319 9408663 9409202 590220 589681 CM091763.1 scf7180002754973 100.0 True fake: scaffold gap size wrong estimation (local) 9362340 9390588 635319 607052 CM091763.1 scf7180002754973 99.64 True indel: indel (> 5bp) 9337730 9362231 659963 635464 CM091763.1 scf7180002754973 99.33 True relocation, scaffold gap is present, inconsistency = -52558 9323123 9337717 727122 712534 CM091763.1 scf7180002754973 99.49 True relocation, scaffold gap is present, inconsistency = -11402 9316049 9322842 745597 738805 CM091763.1 scf7180002754973 99.06 True fake: scaffold gap size wrong estimation (local) 9311230 9316039 751579 746780 CM091763.1 scf7180002754973 99.48 True CONTIG scf7180002754973 751579 misassembled 12497129 12523075 1 26045 CM091756.1 scf7180002754974 99.05 True fake: scaffold gap size wrong estimation (local) 12523270 12589256 28075 94044 CM091756.1 scf7180002754974 99.15 True fake: scaffold gap size wrong estimation (local) 12589431 12600006 99025 109618 CM091756.1 scf7180002754974 98.72 True fake: scaffold gap size wrong estimation (local) 12600715 12655553 109746 164376 CM091756.1 scf7180002754974 98.96 True relocation, scaffold gap is present, inconsistency = -30948 12656963 12657471 196734 197242 CM091756.1 scf7180002754974 98.82 True local misassembly 12659580 12660965 198783 200168 CM091756.1 scf7180002754974 99.21 True indel: indel (> 5bp) 12661055 12662951 200229 202125 CM091756.1 scf7180002754974 99.53 True fake: scaffold gap size wrong estimation (local) 12662953 12692399 204288 233565 CM091756.1 scf7180002754974 98.71 True relocation, scaffold gap is present, inconsistency = -18387 12692879 12694522 252432 254075 CM091756.1 scf7180002754974 97.57 True local misassembly 12695122 12696256 254661 255795 CM091756.1 scf7180002754974 99.47 True fake: scaffold gap size wrong estimation (local) 12696536 12830372 259647 393534 CM091756.1 scf7180002754974 99.37 True relocation, scaffold gap is present, inconsistency = -120149 12747974 12748551 431285 431884 CM091756.1 scf7180002754974 99.59 True fake: scaffold gap size wrong estimation (local) 12830278 12861479 513772 545093 CM091756.1 scf7180002754974 98.85 True relocation, scaffold gap is present, inconsistency = -26772 12861687 12870745 572073 581107 CM091756.1 scf7180002754974 98.98 True fake: scaffold gap size wrong estimation (extensive) 12870781 12881204 590084 600474 CM091756.1 scf7180002754974 99.27 True fake: scaffold gap size wrong estimation (local) 12881761 12888406 602407 609054 CM091756.1 scf7180002754974 99.02 True fake: scaffold gap size wrong estimation (local) 12895615 12922953 623032 650342 CM091756.1 scf7180002754974 99.23 True relocation, scaffold gap is present, inconsistency = -17844 12922979 12955202 668212 700477 CM091756.1 scf7180002754974 99.24 True fake: scaffold gap size wrong estimation (local) 12957521 12959368 702965 704815 CM091756.1 scf7180002754974 96.9 True fake: scaffold gap size wrong estimation (local) 12959378 13094466 706663 841791 CM091756.1 scf7180002754974 99.16 True indel: indel (> 5bp) 13094602 13106245 841891 853572 CM091756.1 scf7180002754974 98.82 True indel: indel (> 5bp) 13106287 13146177 853640 893325 CM091756.1 scf7180002754974 98.86 True relocation, inconsistency = 6027358 7058304 7078928 913988 893326 CM091756.1 scf7180002754974 99.33 True fake: scaffold gap size wrong estimation (local) 7047142 7057885 924722 914512 CM091756.1 scf7180002754974 95.27 True indel: stretch of mismatches 7001239 7047141 970807 924723 CM091756.1 scf7180002754974 99.39 True local misassembly 6824330 7000389 1147604 971683 CM091756.1 scf7180002754974 99.84 True relocation, scaffold gap is present, inconsistency = -115062 6861483 6862102 1225576 1224894 CM091756.1 scf7180002754974 96.28 True fake: scaffold gap size wrong estimation (local) 6770344 6811353 1316741 1275733 CM091756.1 scf7180002754974 99.95 True relocation, scaffold gap is present, inconsistency = -41080 6793173 6794070 1335029 1334095 CM091756.1 scf7180002754974 97.51 True fake: scaffold gap size wrong estimation (local) 6756068 6770147 1371835 1358061 CM091756.1 scf7180002754974 97.79 True fake: scaffold gap size wrong estimation (extensive) 6729660 6755941 1407899 1381841 CM091756.1 scf7180002754974 99.04 True relocation, scaffold gap is present, inconsistency = -23290 6677737 6729100 1484577 1431749 CM091756.1 scf7180002754974 98.47 True CONTIG scf7180002754974 1484578 misassembled 8203928 8206192 2301 1 CM091766.1 scf7180002754975 98.9 True fake: scaffold gap size wrong estimation (local) 8184853 8203447 21369 2782 CM091766.1 scf7180002754975 99.64 True relocation, scaffold gap is present, inconsistency = -17336 8159177 8184856 63665 38702 CM091766.1 scf7180002754975 96.57 True indel: stretch of mismatches 8152878 8159176 69951 63666 CM091766.1 scf7180002754975 99.56 True fake: scaffold gap size wrong estimation (extensive) 8145564 8152886 85093 77759 CM091766.1 scf7180002754975 99.72 True fake: scaffold gap size wrong estimation (local) 8107762 8144447 122427 85742 CM091766.1 scf7180002754975 99.63 True fake: scaffold gap size wrong estimation (local) 8063255 8107756 171127 126604 CM091766.1 scf7180002754975 99.56 True fake: scaffold gap size wrong estimation (local) 8045137 8063150 189219 171220 CM091766.1 scf7180002754975 99.58 True fake: scaffold gap size wrong estimation (local) 8009713 8044540 229409 194589 CM091766.1 scf7180002754975 99.7 True relocation, scaffold gap is present, inconsistency = -16677 7895327 8009652 360556 246147 CM091766.1 scf7180002754975 99.68 True relocation, scaffold gap is present, inconsistency = -10491 7871500 7894951 394846 371423 CM091766.1 scf7180002754975 99.63 True translocation 12821763 12846523 394847 419609 CM091760.1 scf7180002754975 99.45 True relocation, scaffold gap is present, inconsistency = -48124 12846549 12855990 467759 477202 CM091760.1 scf7180002754975 99.38 True fake: scaffold gap size wrong estimation (local) 12856181 12868364 479147 491348 CM091760.1 scf7180002754975 99.15 True fake: scaffold gap size wrong estimation (local) 12868391 12931035 497230 559527 CM091760.1 scf7180002754975 98.47 True fake: scaffold gap size wrong estimation (local) 12931778 12967649 560258 596187 CM091760.1 scf7180002754975 99.05 True indel: indel (> 5bp) 12967695 12970512 596252 599067 CM091760.1 scf7180002754975 99.65 True fake: scaffold gap size wrong estimation (local) 12970505 12978468 604393 612358 CM091760.1 scf7180002754975 99.69 True fake: scaffold gap size wrong estimation (extensive) 12978481 13108644 619876 749775 CM091760.1 scf7180002754975 98.98 True fake: scaffold gap size wrong estimation (local) 13108962 13127578 749961 768569 CM091760.1 scf7180002754975 99.74 True relocation, scaffold gap is present, inconsistency = -14686 13129352 13131235 785029 786912 CM091760.1 scf7180002754975 99.89 True fake: scaffold gap size wrong estimation (local) 13131323 13154635 787965 810712 CM091760.1 scf7180002754975 97.11 True relocation, scaffold gap is present, inconsistency = -14413 13154634 13220946 825124 890954 CM091760.1 scf7180002754975 98.4 True fake: scaffold gap size wrong estimation (local) 13221314 13300162 893846 972739 CM091760.1 scf7180002754975 99.37 True relocation, scaffold gap is present, inconsistency = -22447 13300895 13310786 995919 1005810 CM091760.1 scf7180002754975 99.41 True fake: scaffold gap size wrong estimation (local) 13313712 13325255 1005968 1017520 CM091760.1 scf7180002754975 99.21 True fake: scaffold gap size wrong estimation (local) 13325264 13341174 1023029 1038921 CM091760.1 scf7180002754975 99.0 True fake: scaffold gap size wrong estimation (local) 13341454 13365715 1042650 1066325 CM091760.1 scf7180002754975 96.83 True CONTIG scf7180002754975 1082823 misassembled 12410332 12599830 189086 3 CM091755.1 scf7180002754976 99.13 True relocation, scaffold gap is present, inconsistency = -69454 12346499 12410326 322402 258546 CM091755.1 scf7180002754976 99.29 True relocation, scaffold gap is present, inconsistency = -55940 12329754 12346455 395113 378386 CM091755.1 scf7180002754976 99.45 True fake: scaffold gap size wrong estimation (local) 12276008 12329741 451386 397703 CM091755.1 scf7180002754976 99.31 True translocation, scaffold gap is present 3322916 3331835 483971 492925 CM091765.1 scf7180002754976 98.73 True fake: scaffold gap size wrong estimation (extensive) 3332415 3334093 502310 503979 CM091765.1 scf7180002754976 98.16 True fake: not a misassembly (possible transposable element) 12270005 12276045 510074 504029 CM091755.1 scf7180002754976 99.74 True fake: not a misassembly (possible transposable element) 3334468 3339758 510156 515460 CM091765.1 scf7180002754976 99.02 True translocation, scaffold gap is present 12265062 12269717 524200 519543 CM091755.1 scf7180002754976 99.66 True translocation, scaffold gap is present 3339888 3346293 524221 530639 CM091765.1 scf7180002754976 99.11 True translocation, scaffold gap is present 12261140 12265184 538974 534923 CM091755.1 scf7180002754976 99.36 True fake: not a misassembly (possible transposable element) 3346451 3350569 540908 545022 CM091765.1 scf7180002754976 98.89 True fake: not a misassembly (possible transposable element) 12253000 12260574 552619 545043 CM091755.1 scf7180002754976 99.46 True fake: scaffold gap size wrong estimation (local) 12213246 12252961 594245 554477 CM091755.1 scf7180002754976 99.18 True fake: scaffold gap size wrong estimation (local) 12114499 12213135 692828 594345 CM091755.1 scf7180002754976 99.18 True fake: scaffold gap size wrong estimation (local) 12050721 12114116 756580 693054 CM091755.1 scf7180002754976 99.44 True indel: indel (> 5bp) 11996596 12050456 810727 756852 CM091755.1 scf7180002754976 99.51 True fake: scaffold gap size wrong estimation (extensive) 11991771 11996588 823468 818646 CM091755.1 scf7180002754976 99.61 True fake: scaffold gap size wrong estimation (local) 11985074 11991677 830195 823556 CM091755.1 scf7180002754976 99.17 True fake: scaffold gap size wrong estimation (local) 11891582 11984839 935403 831137 CM091755.1 scf7180002754976 98.48 True fake: scaffold gap size wrong estimation (local) 11800449 11891597 1029456 937899 CM091755.1 scf7180002754976 99.06 True relocation, scaffold gap is present, inconsistency = -16266 11799243 11799748 1046928 1046423 CM091755.1 scf7180002754976 100.0 True indel: indel (<= 5bp) 11797534 11799242 1048638 1046930 CM091755.1 scf7180002754976 99.82 True indel: indel (<= 5bp) 11796413 11797532 1049758 1048639 CM091755.1 scf7180002754976 99.73 True fake: scaffold gap size wrong estimation (local) 11795182 11796014 1051022 1050190 CM091755.1 scf7180002754976 99.52 True fake: scaffold gap size wrong estimation (local) 11791626 11793099 1054526 1053053 CM091755.1 scf7180002754976 99.93 True local misassembly 11784997 11790150 1059823 1054670 CM091755.1 scf7180002754976 99.53 True indel: indel (<= 5bp) 11784405 11784994 1060413 1059824 CM091755.1 scf7180002754976 98.96 True local misassembly 11732456 11783140 1111305 1060414 CM091755.1 scf7180002754976 99.33 True fake: scaffold gap size wrong estimation (local) 11721481 11732365 1122092 1111396 CM091755.1 scf7180002754976 97.53 True fake: scaffold gap size wrong estimation (extensive) 11720136 11721471 1131220 1129884 CM091755.1 scf7180002754976 99.93 True fake: scaffold gap size wrong estimation (local) 11714873 11719074 1135377 1131241 CM091755.1 scf7180002754976 97.5 True local misassembly 11719062 11720065 1136401 1135398 CM091755.1 scf7180002754976 100.0 True fake: scaffold gap size wrong estimation (local) 11627606 11714764 1225456 1138527 CM091755.1 scf7180002754976 98.92 True indel: indel (> 5bp) 11614273 11627517 1238813 1225533 CM091755.1 scf7180002754976 99.26 True fake: scaffold gap size wrong estimation (local) 11598156 11614051 1260103 1244469 CM091755.1 scf7180002754976 98.0 True fake: scaffold gap size wrong estimation (local) 11585082 11597629 1275545 1263013 CM091755.1 scf7180002754976 99.2 True fake: scaffold gap size wrong estimation (extensive) 11547938 11585079 1320832 1284082 CM091755.1 scf7180002754976 98.13 True relocation, scaffold gap is present, inconsistency = -15137 11415891 11547655 1467879 1336252 CM091755.1 scf7180002754976 99.66 True indel: indel (<= 5bp) 11345504 11415882 1538300 1467886 CM091755.1 scf7180002754976 99.91 True relocation, scaffold gap is present, inconsistency = -89453 11386460 11386962 1586802 1586295 CM091755.1 scf7180002754976 100.0 True fake: scaffold gap size wrong estimation (local) 11226921 11345437 1746414 1628030 CM091755.1 scf7180002754976 99.11 True translocation 18944056 18948719 1746415 1751092 CM091751.1 scf7180002754976 98.7 True fake: scaffold gap size wrong estimation (local) 18950115 18957307 1752033 1759258 CM091751.1 scf7180002754976 97.17 True fake: scaffold gap size wrong estimation (local) 18957421 18959126 1759372 1761076 CM091751.1 scf7180002754976 98.87 True relocation, inconsistency = 116143 19075270 19078105 1761077 1763929 CM091751.1 scf7180002754976 97.73 True fake: not a misassembly (possible transposable element) 86693 88357 1764089 1765756 CM091760.1 scf7180002754976 99.64 True fake: not a misassembly (possible transposable element) 19077987 19086014 1766608 1774550 CM091751.1 scf7180002754976 97.78 True translocation, scaffold gap is present 89413 90173 1776766 1777526 CM091760.1 scf7180002754976 100.0 True indel: indel (<= 5bp) 90175 90828 1777527 1778180 CM091760.1 scf7180002754976 98.17 True translocation, scaffold gap is present 19086728 19089652 1783285 1786207 CM091751.1 scf7180002754976 99.22 True translocation 5346569 5388692 1827315 1786208 CM091754.1 scf7180002754976 96.57 True fake: scaffold gap size wrong estimation (extensive) 5337840 5338419 1828352 1827772 CM091754.1 scf7180002754976 99.48 True CONTIG scf7180002754976 1828904 misassembled 4732083 4778336 46285 1 CM091751.1 scf7180002754977 99.32 True fake: scaffold gap size wrong estimation (local) 4713866 4731511 64350 46737 CM091751.1 scf7180002754977 98.78 True relocation, scaffold gap is present, inconsistency = -11740 4700920 4713509 89055 76447 CM091751.1 scf7180002754977 99.45 True fake: scaffold gap size wrong estimation (local) 4635415 4700894 155454 90351 CM091751.1 scf7180002754977 99.12 True indel: indel (> 5bp) 4595227 4635384 195690 155506 CM091751.1 scf7180002754977 99.46 True relocation, scaffold gap is present, inconsistency = -70935 4649069 4649577 212816 212275 CM091751.1 scf7180002754977 98.94 True fake: scaffold gap size wrong estimation (local) 4561607 4595191 300127 266892 CM091751.1 scf7180002754977 97.84 True fake: scaffold gap size wrong estimation (local) 4505428 4561137 355840 300429 CM091751.1 scf7180002754977 98.82 True fake: scaffold gap size wrong estimation (local) 4486376 4505417 376765 357734 CM091751.1 scf7180002754977 99.22 True indel: indel (> 5bp) 4428598 4486305 434588 376856 CM091751.1 scf7180002754977 99.16 True fake: scaffold gap size wrong estimation (extensive) 4394196 4428371 477447 443176 CM091751.1 scf7180002754977 98.96 True relocation, scaffold gap is present, inconsistency = -28234 4419005 4419524 480872 480353 CM091751.1 scf7180002754977 99.3 True fake: scaffold gap size wrong estimation (local) 4253550 4394182 646220 505754 CM091751.1 scf7180002754977 99.01 True fake: scaffold gap size wrong estimation (local) 4240145 4253295 659771 646615 CM091751.1 scf7180002754977 99.26 True local misassembly 4236347 4240049 663659 659961 CM091751.1 scf7180002754977 99.33 True relocation, scaffold gap is present, inconsistency = -10811 4215300 4236297 695557 674520 CM091751.1 scf7180002754977 98.97 True fake: scaffold gap size wrong estimation (local) 4178958 4215166 731463 695692 CM091751.1 scf7180002754977 97.89 True fake: scaffold gap size wrong estimation (local) 4162801 4178332 748979 733492 CM091751.1 scf7180002754977 99.07 True relocation, scaffold gap is present, inconsistency = -15118 4152093 4162777 774815 764121 CM091751.1 scf7180002754977 99.18 True indel: indel (> 5bp) 4136998 4152025 789940 774916 CM091751.1 scf7180002754977 99.24 True relocation, scaffold gap is present, inconsistency = -24569 4154320 4155655 797219 795852 CM091751.1 scf7180002754977 98.52 True fake: scaffold gap size wrong estimation (local) 4091961 4136989 859797 814600 CM091751.1 scf7180002754977 98.97 True fake: scaffold gap size wrong estimation (local) 4033787 4091873 918029 859887 CM091751.1 scf7180002754977 99.26 True indel: indel (> 5bp) 4020662 4033680 931123 918089 CM091751.1 scf7180002754977 99.32 True fake: scaffold gap size wrong estimation (local) 4003812 4020667 951634 934770 CM091751.1 scf7180002754977 99.21 True indel: indel (> 5bp) 3994825 4003731 960689 951768 CM091751.1 scf7180002754977 99.23 True relocation, scaffold gap is present, inconsistency = -19365 3994138 3994740 980741 980139 CM091751.1 scf7180002754977 99.83 True indel: indel (> 5bp) 3991813 3994055 983156 980903 CM091751.1 scf7180002754977 97.61 True indel: indel (> 5bp) 3983145 3991680 991867 983324 CM091751.1 scf7180002754977 99.15 True CONTIG scf7180002754977 991867 misassembled 6196930 6213707 17072 298 CM091755.1 scf7180002754978 99.57 True fake: scaffold gap size wrong estimation (local) 6143599 6196928 73762 20414 CM091755.1 scf7180002754978 99.32 True relocation, scaffold gap is present, inconsistency = -35055 6142762 6143970 109651 108446 CM091755.1 scf7180002754978 98.44 True fake: scaffold gap size wrong estimation (local) 6130592 6142640 121853 109796 CM091755.1 scf7180002754978 99.54 True indel: indel (> 5bp) 6090400 6130523 161959 121912 CM091755.1 scf7180002754978 99.25 True fake: scaffold gap size wrong estimation (local) 6060323 6090302 191658 162070 CM091755.1 scf7180002754978 98.3 True fake: scaffold gap size wrong estimation (local) 6056229 6060312 199700 195617 CM091755.1 scf7180002754978 99.34 True fake: scaffold gap size wrong estimation (local) 6017137 6056233 240701 200550 CM091755.1 scf7180002754978 97.97 True fake: scaffold gap size wrong estimation (local) 5860608 6017282 400304 243340 CM091755.1 scf7180002754978 99.19 True relocation, scaffold gap is present, inconsistency = -28374 5812863 5860608 476384 428678 CM091755.1 scf7180002754978 99.48 True relocation, scaffold gap is present, inconsistency = -17491 5811695 5812510 495043 494228 CM091755.1 scf7180002754978 99.63 True indel: indel (> 5bp) 5784909 5811533 521853 495192 CM091755.1 scf7180002754978 99.43 True relocation, scaffold gap is present, inconsistency = -11940 5758968 5785104 559725 533598 CM091755.1 scf7180002754978 99.16 True indel: indel (> 5bp) 5750214 5758704 568537 560050 CM091755.1 scf7180002754978 99.56 True relocation, scaffold gap is present, inconsistency = -23033 5750407 5750964 591412 590820 CM091755.1 scf7180002754978 96.66 True fake: scaffold gap size wrong estimation (local) 5683092 5750180 658539 591433 CM091755.1 scf7180002754978 99.31 True relocation, scaffold gap is present, inconsistency = -66907 5475400 5683015 933120 725523 CM091755.1 scf7180002754978 99.52 True fake: scaffold gap size wrong estimation (local) 5463580 5475290 944937 933215 CM091755.1 scf7180002754978 99.11 True translocation 14001628 14002150 945460 944938 CM091757.1 scf7180002754978 99.58 True indel: indel (<= 5bp) 14000842 14001626 946245 945461 CM091757.1 scf7180002754978 100.0 True indel: indel (<= 5bp) 13998750 14000841 948338 946247 CM091757.1 scf7180002754978 100.0 True fake: scaffold gap size wrong estimation (local) 13997868 13998616 949272 948524 CM091757.1 scf7180002754978 99.87 True indel: indel (<= 5bp) 13996864 13997867 950278 949275 CM091757.1 scf7180002754978 99.9 True fake: scaffold gap size wrong estimation (local) 13994053 13995288 951590 950355 CM091757.1 scf7180002754978 100.0 True indel: indel (<= 5bp) 13992185 13993902 953461 951744 CM091757.1 scf7180002754978 99.94 True fake: scaffold gap size wrong estimation (local) 13970397 13992024 977990 956580 CM091757.1 scf7180002754978 98.54 True fake: scaffold gap size wrong estimation (local) 13897971 13970071 1050277 978149 CM091757.1 scf7180002754978 99.77 True indel: indel (<= 5bp) 13895531 13897922 1052715 1050324 CM091757.1 scf7180002754978 99.83 True relocation, scaffold gap is present, inconsistency = -62782 13874829 13894971 1136217 1116057 CM091757.1 scf7180002754978 99.71 True relocation, scaffold gap is present, inconsistency = -19658 13819276 13873913 1211215 1156791 CM091757.1 scf7180002754978 99.5 True relocation, scaffold gap is present, inconsistency = -54547 13841367 13841932 1243733 1243106 CM091757.1 scf7180002754978 96.83 True fake: scaffold gap size wrong estimation (local) 13800689 13819285 1284434 1265839 CM091757.1 scf7180002754978 99.91 True fake: scaffold gap size wrong estimation (local) 13779048 13800278 1308549 1287316 CM091757.1 scf7180002754978 99.79 True fake: scaffold gap size wrong estimation (local) 13766599 13779032 1325171 1312742 CM091757.1 scf7180002754978 99.46 True fake: scaffold gap size wrong estimation (local) 13761983 13766218 1331043 1326807 CM091757.1 scf7180002754978 99.74 True fake: scaffold gap size wrong estimation (local) 13758619 13761061 1338195 1335763 CM091757.1 scf7180002754978 99.43 True translocation, scaffold gap is present 11837658 11838814 1339372 1338216 CM091763.1 scf7180002754978 98.79 True fake: scaffold gap size wrong estimation (local) 11836345 11837022 1342438 1341761 CM091763.1 scf7180002754978 98.97 True translocation, scaffold gap is present 13697941 13758446 1403373 1343091 CM091757.1 scf7180002754978 98.83 True fake: scaffold gap size wrong estimation (local) 13695819 13697241 1405497 1404077 CM091757.1 scf7180002754978 99.02 True fake: scaffold gap size wrong estimation (local) 13662796 13690021 1438554 1411371 CM091757.1 scf7180002754978 99.37 True fake: scaffold gap size wrong estimation (local) 13642359 13660531 1458986 1440865 CM091757.1 scf7180002754978 99.32 True relocation, scaffold gap is present, inconsistency = -20089 13637198 13642122 1484228 1479312 CM091757.1 scf7180002754978 99.51 True fake: scaffold gap size wrong estimation (local) 13632182 13636823 1489372 1484740 CM091757.1 scf7180002754978 99.63 True fake: scaffold gap size wrong estimation (local) 13621209 13632123 1504990 1494055 CM091757.1 scf7180002754978 99.65 True fake: scaffold gap size wrong estimation (local) 13590841 13620899 1534795 1505286 CM091757.1 scf7180002754978 97.57 True fake: scaffold gap size wrong estimation (local) 13555284 13590814 1573899 1538597 CM091757.1 scf7180002754978 98.51 True CONTIG scf7180002754978 1574955 misassembled 116673 167215 1 50383 CM091768.1 scf7180002754979 99.59 True relocation, inconsistency = 31644 199108 206943 50632 58440 CM091768.1 scf7180002754979 99.25 True relocation, scaffold gap is present, inconsistency = -76632 130618 131174 58747 59317 CM091768.1 scf7180002754979 100.0 True relocation, scaffold gap is present, inconsistency = 34270 207112 355766 100985 249632 CM091768.1 scf7180002754979 99.82 True relocation, scaffold gap is present, inconsistency = -148714 319872 320559 362452 363139 CM091768.1 scf7180002754979 100.0 True fake: scaffold gap size wrong estimation (local) 355973 400024 397998 442052 CM091768.1 scf7180002754979 99.83 True relocation, scaffold gap is present, inconsistency = -41589 400100 411946 483717 495537 CM091768.1 scf7180002754979 99.51 True relocation, scaffold gap is present, inconsistency = -11679 411980 430926 507250 525461 CM091768.1 scf7180002754979 95.68 True fake: scaffold gap size wrong estimation (local) 432340 436232 526704 530605 CM091768.1 scf7180002754979 99.6 True fake: scaffold gap size wrong estimation (local) 436332 436884 530729 531281 CM091768.1 scf7180002754979 100.0 True indel: indel (<= 5bp) 436887 437630 531282 532025 CM091768.1 scf7180002754979 99.6 True indel: indel (<= 5bp) 437632 438327 532026 532721 CM091768.1 scf7180002754979 99.86 True indel: indel (> 5bp) 438338 439486 532722 533870 CM091768.1 scf7180002754979 96.95 True fake: scaffold gap size wrong estimation (local) 440269 440901 534654 535286 CM091768.1 scf7180002754979 99.21 True indel: indel (<= 5bp) 440904 441753 535287 536136 CM091768.1 scf7180002754979 97.53 True indel: indel (<= 5bp) 441756 442429 536137 536810 CM091768.1 scf7180002754979 99.26 True fake: scaffold gap size wrong estimation (local) 442583 443178 536996 537591 CM091768.1 scf7180002754979 99.83 True fake: scaffold gap size wrong estimation (local) 444161 446329 537987 540155 CM091768.1 scf7180002754979 99.63 True indel: indel (<= 5bp) 446331 447526 540156 541351 CM091768.1 scf7180002754979 99.83 True indel: indel (<= 5bp) 447986 448856 541808 542678 CM091768.1 scf7180002754979 99.54 True local misassembly 449342 450291 543186 544135 CM091768.1 scf7180002754979 99.79 True fake: scaffold gap size wrong estimation (local) 450319 476230 549906 575644 CM091768.1 scf7180002754979 98.52 True fake: scaffold gap size wrong estimation (local) 476217 495660 578322 597871 CM091768.1 scf7180002754979 99.12 True local misassembly 495899 533385 598012 635466 CM091768.1 scf7180002754979 99.7 True relocation, scaffold gap is present, inconsistency = -16790 522295 522920 641166 641791 CM091768.1 scf7180002754979 100.0 True fake: scaffold gap size wrong estimation (local) 532703 556014 651570 674092 CM091768.1 scf7180002754979 96.51 True fake: scaffold gap size wrong estimation (local) 556034 686999 680366 811374 CM091768.1 scf7180002754979 99.68 True local misassembly 687564 776723 811600 900551 CM091768.1 scf7180002754979 99.42 True local misassembly 777307 834946 900754 957929 CM091768.1 scf7180002754979 98.5 True CONTIG scf7180002754979 957929 misassembled 7522754 7535123 12375 1 CM091767.1 scf7180002754980 99.93 True fake: scaffold gap size wrong estimation (local) 7513956 7522333 20960 12594 CM091767.1 scf7180002754980 99.77 True fake: scaffold gap size wrong estimation (local) 7466024 7513845 68906 21071 CM091767.1 scf7180002754980 99.87 True relocation, scaffold gap is present, inconsistency = -21217 7460259 7465770 95890 90377 CM091767.1 scf7180002754980 99.8 True indel: indel (> 5bp) 7405971 7460214 149096 96005 CM091767.1 scf7180002754980 97.48 True fake: scaffold gap size wrong estimation (local) 7401722 7405973 153908 149657 CM091767.1 scf7180002754980 99.86 True indel: indel (<= 5bp) 7399954 7401721 155677 153910 CM091767.1 scf7180002754980 99.94 True indel: indel (<= 5bp) 7399277 7399953 156355 155679 CM091767.1 scf7180002754980 100.0 True indel: indel (<= 5bp) 7396189 7399190 159444 156443 CM091767.1 scf7180002754980 99.87 True indel: indel (<= 5bp) 7395654 7396185 159976 159445 CM091767.1 scf7180002754980 99.81 True fake: scaffold gap size wrong estimation (local) 7390015 7392915 163042 160142 CM091767.1 scf7180002754980 99.79 True indel: indel (<= 5bp) 7388923 7389853 164136 163206 CM091767.1 scf7180002754980 96.56 True indel: indel (> 5bp) 7385794 7388913 167256 164137 CM091767.1 scf7180002754980 99.62 True local misassembly 7384101 7385070 168950 167981 CM091767.1 scf7180002754980 99.59 True indel: indel (> 5bp) 7381046 7384032 171966 168980 CM091767.1 scf7180002754980 99.6 True indel: indel (> 5bp) 7380388 7381022 172601 171967 CM091767.1 scf7180002754980 100.0 True fake: scaffold gap size wrong estimation (local) 7374497 7379418 177548 172641 CM091767.1 scf7180002754980 99.63 True indel: indel (<= 5bp) 7346597 7374451 205426 177599 CM091767.1 scf7180002754980 99.62 True relocation, scaffold gap is present, inconsistency = -30515 7341636 7346586 240899 235952 CM091767.1 scf7180002754980 99.86 True fake: scaffold gap size wrong estimation (local) 7327865 7341506 254867 241234 CM091767.1 scf7180002754980 99.8 True fake: scaffold gap size wrong estimation (local) 7311814 7327055 269781 254888 CM091767.1 scf7180002754980 96.92 True indel: indel (> 5bp) 7301541 7311675 280064 269928 CM091767.1 scf7180002754980 99.02 True relocation, scaffold gap is present, inconsistency = -10912 7296881 7300659 295637 291858 CM091767.1 scf7180002754980 99.38 True indel: indel (<= 5bp) 7291782 7296753 300693 295769 CM091767.1 scf7180002754980 97.85 True translocation, scaffold gap is present 4101443 4117078 300714 316409 CM091759.1 scf7180002754980 99.04 True fake: scaffold gap size wrong estimation (local) 4117889 4128705 323521 334337 CM091759.1 scf7180002754980 99.49 True relocation, scaffold gap is present, inconsistency = -10016 4128749 4163912 344397 379572 CM091759.1 scf7180002754980 99.64 True fake: scaffold gap size wrong estimation (local) 4192447 4230302 407678 445361 CM091759.1 scf7180002754980 99.22 True indel: indel (> 5bp) 4230405 4241513 445420 456528 CM091759.1 scf7180002754980 98.95 True fake: scaffold gap size wrong estimation (local) 4241648 4378137 456680 592083 CM091759.1 scf7180002754980 98.41 True local misassembly 4378465 4412732 592217 626539 CM091759.1 scf7180002754980 99.13 True fake: scaffold gap size wrong estimation (local) 4413197 4436673 633988 657210 CM091759.1 scf7180002754980 98.45 True relocation, scaffold gap is present, inconsistency = -22811 4436582 4439798 679930 683545 CM091759.1 scf7180002754980 95.0 True indel: indel (> 5bp) 4439845 4441385 683616 685158 CM091759.1 scf7180002754980 99.81 True fake: scaffold gap size wrong estimation (local) 4441608 4442689 685329 686409 CM091759.1 scf7180002754980 99.45 True fake: scaffold gap size wrong estimation (local) 4443171 4453935 687577 698181 CM091759.1 scf7180002754980 97.18 True fake: scaffold gap size wrong estimation (extensive) 4453911 4461481 705865 713391 CM091759.1 scf7180002754980 97.78 True fake: scaffold gap size wrong estimation (local) 4467027 4470250 715691 718928 CM091759.1 scf7180002754980 98.24 True relocation, scaffold gap is present, inconsistency = -8246 4462095 4466497 719019 723440 CM091759.1 scf7180002754980 98.6 True fake: scaffold gap size wrong estimation (local) 4471022 4475506 724422 728911 CM091759.1 scf7180002754980 99.38 True CONTIG scf7180002754980 731090 misassembled 11462573 11464243 1671 1 CM091762.1 scf7180002754981 99.7 True indel: indel (<= 5bp) 11461854 11462572 2391 1673 CM091762.1 scf7180002754981 100.0 True fake: scaffold gap size wrong estimation (local) 11459274 11461151 4934 3057 CM091762.1 scf7180002754981 99.41 True indel: indel (<= 5bp) 11457750 11458895 6463 5318 CM091762.1 scf7180002754981 97.82 True fake: scaffold gap size wrong estimation (local) 11455671 11456507 7871 7035 CM091762.1 scf7180002754981 99.88 True indel: indel (<= 5bp) 11454076 11455669 9465 7872 CM091762.1 scf7180002754981 97.68 True indel: indel (> 5bp) 11453494 11454064 10036 9466 CM091762.1 scf7180002754981 97.02 True indel: indel (<= 5bp) 11452250 11453493 11283 10040 CM091762.1 scf7180002754981 100.0 True fake: scaffold gap size wrong estimation (local) 11435828 11451592 26850 11639 CM091762.1 scf7180002754981 95.59 True fake: scaffold gap size wrong estimation (local) 11395644 11435794 73260 33094 CM091762.1 scf7180002754981 99.44 True relocation, scaffold gap is present, inconsistency = -27751 11386214 11395611 110282 101044 CM091762.1 scf7180002754981 97.71 True fake: scaffold gap size wrong estimation (local) 11384467 11385328 112431 111558 CM091762.1 scf7180002754981 98.17 True fake: scaffold gap size wrong estimation (local) 11304746 11382602 191165 113454 CM091762.1 scf7180002754981 99.45 True fake: scaffold gap size wrong estimation (local) 11299445 11304084 196516 191874 CM091762.1 scf7180002754981 99.74 True fake: scaffold gap size wrong estimation (local) 11283351 11299173 212392 196787 CM091762.1 scf7180002754981 98.02 True relocation, scaffold gap is present, inconsistency = -12776 11262530 11283097 245778 225422 CM091762.1 scf7180002754981 98.34 True fake: scaffold gap size wrong estimation (local) 11230596 11262512 279709 247839 CM091762.1 scf7180002754981 99.17 True fake: scaffold gap size wrong estimation (local) 11219399 11230786 292742 281607 CM091762.1 scf7180002754981 97.27 True relocation, scaffold gap is present, inconsistency = -10290 11094103 11219359 427734 303072 CM091762.1 scf7180002754981 98.96 True fake: scaffold gap size wrong estimation (local) 11061597 11094058 460875 428341 CM091762.1 scf7180002754981 99.42 True indel: indel (> 5bp) 11018726 11061540 503743 460914 CM091762.1 scf7180002754981 99.19 True translocation, scaffold gap is present 11970716 11999689 536151 507145 CM091760.1 scf7180002754981 99.53 True translocation, scaffold gap is present 11015066 11018568 564120 560613 CM091762.1 scf7180002754981 99.4 True fake: scaffold gap size wrong estimation (local) 11008800 11014778 573844 567869 CM091762.1 scf7180002754981 99.28 True translocation, scaffold gap is present 11960782 11970695 583839 573865 CM091760.1 scf7180002754981 99.33 True translocation, scaffold gap is present 1074104 1084336 596153 585890 CM091768.1 scf7180002754981 99.17 True translocation, scaffold gap is present 10999686 11008787 606817 597763 CM091762.1 scf7180002754981 98.24 True translocation, scaffold gap is present 11947435 11960771 620327 606990 CM091760.1 scf7180002754981 99.86 True translocation, scaffold gap is present 1068206 1074105 626265 620358 CM091768.1 scf7180002754981 99.36 True translocation, scaffold gap is present 10974522 10999711 651487 626286 CM091762.1 scf7180002754981 99.44 True translocation, scaffold gap is present 1067451 1068240 656312 655523 CM091768.1 scf7180002754981 99.49 True local misassembly 1065486 1067004 657983 656465 CM091768.1 scf7180002754981 99.21 True indel: indel (<= 5bp) 1064493 1065295 658971 658169 CM091768.1 scf7180002754981 99.38 True indel: indel (<= 5bp) 1062782 1064492 660683 658973 CM091768.1 scf7180002754981 99.77 True fake: scaffold gap size wrong estimation (local) 1043461 1062499 684740 665649 CM091768.1 scf7180002754981 99.31 True translocation, scaffold gap is present 10969328 10974749 690190 684761 CM091762.1 scf7180002754981 99.37 True translocation, scaffold gap is present 1026389 1043569 708897 691702 CM091768.1 scf7180002754981 99.18 True translocation, scaffold gap is present 10953231 10969257 726315 710291 CM091762.1 scf7180002754981 99.45 True translocation, scaffold gap is present 1024210 1025964 743221 741466 CM091768.1 scf7180002754981 99.26 True fake: scaffold gap size wrong estimation (local) 1019614 1023191 748115 744537 CM091768.1 scf7180002754981 99.5 True translocation, scaffold gap is present 10935244 10951957 764862 748138 CM091762.1 scf7180002754981 99.27 True translocation, scaffold gap is present 998868 1019591 787015 766290 CM091768.1 scf7180002754981 99.22 True translocation, scaffold gap is present 10915923 10935006 819388 800299 CM091762.1 scf7180002754981 99.65 True translocation, scaffold gap is present 982344 998862 841959 825383 CM091768.1 scf7180002754981 98.72 True translocation, scaffold gap is present 10909331 10916045 861029 854293 CM091762.1 scf7180002754981 98.87 True translocation, scaffold gap is present 978266 981893 868106 864504 CM091768.1 scf7180002754981 98.19 True translocation, scaffold gap is present 10900757 10909352 879332 870754 CM091762.1 scf7180002754981 99.28 True indel: indel (> 5bp) 10894057 10900704 886001 879355 CM091762.1 scf7180002754981 99.53 True translocation, scaffold gap is present 972671 978271 891620 886028 CM091768.1 scf7180002754981 98.82 True indel: indel (> 5bp) 968059 972464 896236 891835 CM091768.1 scf7180002754981 99.41 True fake: scaffold gap size wrong estimation (extensive) 954018 968017 919802 905807 CM091768.1 scf7180002754981 99.0 True translocation, scaffold gap is present 10854655 10894070 959243 919829 CM091762.1 scf7180002754981 99.56 True translocation, scaffold gap is present 932098 954023 986289 964359 CM091768.1 scf7180002754981 98.98 True relocation, scaffold gap is present, inconsistency = -21447 919066 932101 1020750 1007733 CM091768.1 scf7180002754981 98.81 True fake: scaffold gap size wrong estimation (extensive) 910806 919008 1038129 1029922 CM091768.1 scf7180002754981 99.17 True fake: scaffold gap size wrong estimation (local) 867619 910636 1080990 1038315 CM091768.1 scf7180002754981 98.57 True relocation, scaffold gap is present, inconsistency = -18535 842028 867608 1124838 1099536 CM091768.1 scf7180002754981 98.11 True CONTIG scf7180002754981 1124853 misassembled 1809913 1823033 605 13383 CM091768.1 scf7180002754982 96.02 True fake: scaffold gap size wrong estimation (local) 1823473 1836351 13807 26716 CM091768.1 scf7180002754982 99.09 True local misassembly 1837805 1838380 27864 28439 CM091768.1 scf7180002754982 99.31 True local misassembly 1839694 1840194 29025 29525 CM091768.1 scf7180002754982 100.0 True indel: indel (> 5bp) 1840424 1840992 29765 30333 CM091768.1 scf7180002754982 99.82 True indel: indel (<= 5bp) 1841111 1841737 30457 31083 CM091768.1 scf7180002754982 99.04 True local misassembly 1843105 1845646 31927 34473 CM091768.1 scf7180002754982 99.45 True fake: scaffold gap size wrong estimation (local) 1846776 1848434 39874 41532 CM091768.1 scf7180002754982 99.52 True local misassembly 1850993 1852274 43702 44983 CM091768.1 scf7180002754982 99.61 True indel: indel (<= 5bp) 1852276 1853038 44984 45746 CM091768.1 scf7180002754982 99.48 True fake: scaffold gap size wrong estimation (extensive) 1854002 1857210 54149 57373 CM091768.1 scf7180002754982 98.64 True fake: scaffold gap size wrong estimation (local) 1858645 1863759 58228 63348 CM091768.1 scf7180002754982 98.87 True fake: scaffold gap size wrong estimation (local) 1864387 1891537 63723 90356 CM091768.1 scf7180002754982 97.0 True indel: stretch of mismatches 1891644 1907679 90463 106504 CM091768.1 scf7180002754982 99.24 True indel: indel (> 5bp) 1907741 1958924 106648 156497 CM091768.1 scf7180002754982 96.42 True local misassembly 1959576 1960144 156515 157083 CM091768.1 scf7180002754982 98.42 True fake: scaffold gap size wrong estimation (local) 1961485 1962350 158426 159291 CM091768.1 scf7180002754982 99.54 True indel: indel (<= 5bp) 1962351 1963178 159293 160120 CM091768.1 scf7180002754982 99.52 True indel: indel (<= 5bp) 1963458 1964136 160403 161081 CM091768.1 scf7180002754982 100.0 True local misassembly 1965321 1966112 161631 162422 CM091768.1 scf7180002754982 99.75 True indel: indel (<= 5bp) 1966135 1967954 162443 164262 CM091768.1 scf7180002754982 99.18 True local misassembly 1970256 1970816 165180 165740 CM091768.1 scf7180002754982 99.29 True local misassembly 1971474 1972406 166399 167331 CM091768.1 scf7180002754982 98.82 True indel: indel (<= 5bp) 1972409 1972963 167332 167886 CM091768.1 scf7180002754982 100.0 True indel: indel (<= 5bp) 1973126 1974159 168051 169084 CM091768.1 scf7180002754982 99.23 True indel: indel (> 5bp) 1974418 1976545 169349 171476 CM091768.1 scf7180002754982 99.3 True local misassembly 1977556 1978307 172259 173010 CM091768.1 scf7180002754982 99.73 True indel: indel (> 5bp) 1978321 1979416 173011 174106 CM091768.1 scf7180002754982 99.45 True indel: indel (<= 5bp) 1979497 1980149 174190 174842 CM091768.1 scf7180002754982 99.54 True indel: indel (> 5bp) 1980212 1980772 174893 175453 CM091768.1 scf7180002754982 99.47 True local misassembly 1983091 1983824 177767 178500 CM091768.1 scf7180002754982 99.18 True local misassembly 1984782 1986179 178853 180250 CM091768.1 scf7180002754982 99.5 True fake: scaffold gap size wrong estimation (local) 1986311 1987640 180408 181737 CM091768.1 scf7180002754982 99.77 True local misassembly 1988074 1989160 181983 183069 CM091768.1 scf7180002754982 99.08 True local misassembly 1990498 1991338 184364 185204 CM091768.1 scf7180002754982 98.57 True local misassembly 1992070 1993001 185938 186869 CM091768.1 scf7180002754982 99.57 True indel: indel (<= 5bp) 1993346 1994149 187216 188019 CM091768.1 scf7180002754982 99.25 True indel: indel (<= 5bp) 1994232 1996898 188103 190769 CM091768.1 scf7180002754982 99.81 True indel: indel (<= 5bp) 1996901 1997741 190770 191610 CM091768.1 scf7180002754982 98.69 True local misassembly 1999445 2000267 191611 192433 CM091768.1 scf7180002754982 99.64 True indel: stretch of mismatches 2000445 2001423 192611 193589 CM091768.1 scf7180002754982 99.69 True indel: indel (<= 5bp) 2001424 2002050 193591 194217 CM091768.1 scf7180002754982 98.72 True local misassembly 2003632 2005078 194535 195981 CM091768.1 scf7180002754982 99.93 True fake: scaffold gap size wrong estimation (local) 2005702 2006303 201983 202584 CM091768.1 scf7180002754982 100.0 True indel: indel (<= 5bp) 2006434 2007287 202716 203569 CM091768.1 scf7180002754982 99.53 True indel: indel (> 5bp) 2007454 2008294 203727 204567 CM091768.1 scf7180002754982 99.05 True local misassembly 2009088 2009595 205367 205874 CM091768.1 scf7180002754982 99.41 True local misassembly 2011131 2012097 206496 207462 CM091768.1 scf7180002754982 99.9 True fake: scaffold gap size wrong estimation (local) 2014829 2017467 210149 212787 CM091768.1 scf7180002754982 99.17 True indel: indel (<= 5bp) 2017468 2018178 212789 213499 CM091768.1 scf7180002754982 99.58 True local misassembly 2018356 2021485 213500 216629 CM091768.1 scf7180002754982 99.23 True indel: indel (> 5bp) 2021500 2022978 216630 218108 CM091768.1 scf7180002754982 99.26 True local misassembly 2023991 2025388 218263 219660 CM091768.1 scf7180002754982 98.93 True indel: indel (<= 5bp) 2025389 2029507 219662 223780 CM091768.1 scf7180002754982 99.39 True fake: scaffold gap size wrong estimation (local) 2031667 2032322 225190 225845 CM091768.1 scf7180002754982 100.0 True indel: indel (<= 5bp) 2032714 2033687 226236 227209 CM091768.1 scf7180002754982 98.46 True indel: indel (<= 5bp) 2033688 2035256 227211 228779 CM091768.1 scf7180002754982 99.17 True indel: indel (> 5bp) 2035320 2035837 228818 229335 CM091768.1 scf7180002754982 99.42 True fake: scaffold gap size wrong estimation (local) 2035838 2036350 229374 229886 CM091768.1 scf7180002754982 99.42 True fake: scaffold gap size wrong estimation (local) 2037759 2039313 231314 232868 CM091768.1 scf7180002754982 99.49 True indel: indel (<= 5bp) 2039801 2040774 233351 234324 CM091768.1 scf7180002754982 100.0 True indel: stretch of mismatches 2041141 2042333 234691 235883 CM091768.1 scf7180002754982 99.58 True indel: indel (<= 5bp) 2042335 2043267 235884 236816 CM091768.1 scf7180002754982 99.36 True indel: indel (<= 5bp) 2043268 2044382 236818 237932 CM091768.1 scf7180002754982 98.74 True local misassembly 2045092 2046138 238031 239077 CM091768.1 scf7180002754982 98.95 True fake: scaffold gap size wrong estimation (local) 2048054 2050893 240489 243328 CM091768.1 scf7180002754982 99.4 True local misassembly 2051048 2052165 243329 244446 CM091768.1 scf7180002754982 99.37 True indel: indel (<= 5bp) 2052166 2053486 244448 245768 CM091768.1 scf7180002754982 99.77 True indel: indel (<= 5bp) 2053492 2054315 245769 246592 CM091768.1 scf7180002754982 98.3 True local misassembly 2056990 2057660 248384 249054 CM091768.1 scf7180002754982 99.85 True indel: indel (<= 5bp) 2057958 2058478 249356 249876 CM091768.1 scf7180002754982 99.42 True indel: indel (<= 5bp) 2058480 2059102 249877 250499 CM091768.1 scf7180002754982 98.56 True local misassembly 2060056 2060696 250730 251370 CM091768.1 scf7180002754982 99.53 True local misassembly 2061423 2062293 252099 252969 CM091768.1 scf7180002754982 99.54 True indel: indel (<= 5bp) 2062294 2065793 252971 256470 CM091768.1 scf7180002754982 99.66 True indel: indel (<= 5bp) 2065794 2067363 256472 258041 CM091768.1 scf7180002754982 99.36 True indel: indel (> 5bp) 2067393 2067975 258042 258624 CM091768.1 scf7180002754982 98.46 True indel: indel (<= 5bp) 2067979 2070731 258625 261377 CM091768.1 scf7180002754982 99.31 True indel: indel (> 5bp) 2070828 2071742 261501 262414 CM091768.1 scf7180002754982 99.13 True local misassembly 2072681 2075314 262723 265356 CM091768.1 scf7180002754982 99.24 True local misassembly 2076314 2079304 265357 268347 CM091768.1 scf7180002754982 99.4 True indel: indel (> 5bp) 2079542 2080185 268540 269183 CM091768.1 scf7180002754982 98.29 True indel: indel (<= 5bp) 2080186 2080718 269185 269717 CM091768.1 scf7180002754982 98.69 True local misassembly 2082280 2083289 270541 271550 CM091768.1 scf7180002754982 98.91 True indel: indel (> 5bp) 2083761 2084670 272028 272937 CM091768.1 scf7180002754982 99.23 True indel: indel (> 5bp) 2084671 2085248 272950 273527 CM091768.1 scf7180002754982 98.62 True indel: indel (<= 5bp) 2085633 2087400 273914 275681 CM091768.1 scf7180002754982 99.43 True relocation, scaffold gap is present, inconsistency = -15561 2087801 2090475 291643 294315 CM091768.1 scf7180002754982 99.18 True indel: indel (> 5bp) 2090613 2099204 294444 302863 CM091768.1 scf7180002754982 96.75 True fake: scaffold gap size wrong estimation (extensive) 2099209 2104320 312091 317204 CM091768.1 scf7180002754982 99.32 True fake: scaffold gap size wrong estimation (local) 2105551 2107268 318345 320062 CM091768.1 scf7180002754982 96.1 True indel: indel (<= 5bp) 2107269 2108083 320064 320878 CM091768.1 scf7180002754982 99.51 True indel: indel (<= 5bp) 2108084 2108656 320881 321453 CM091768.1 scf7180002754982 99.65 True local misassembly 2109361 2109860 322010 322509 CM091768.1 scf7180002754982 99.8 True indel: indel (> 5bp) 2109872 2110855 322510 323493 CM091768.1 scf7180002754982 99.7 True local misassembly 2111991 2112542 324495 325046 CM091768.1 scf7180002754982 100.0 True indel: indel (<= 5bp) 2112543 2115618 325048 328123 CM091768.1 scf7180002754982 98.11 True indel: indel (<= 5bp) 2115620 2116249 328124 328753 CM091768.1 scf7180002754982 99.84 True indel: indel (> 5bp) 2116456 2117029 328939 329512 CM091768.1 scf7180002754982 99.3 True local misassembly 2117749 2118809 330231 331291 CM091768.1 scf7180002754982 99.43 True indel: indel (<= 5bp) 2119171 2119731 331650 332210 CM091768.1 scf7180002754982 99.47 True indel: indel (<= 5bp) 2120079 2121389 332561 333871 CM091768.1 scf7180002754982 99.01 True indel: indel (<= 5bp) 2121419 2124057 333904 336542 CM091768.1 scf7180002754982 99.09 True indel: stretch of mismatches 2124250 2124794 336735 337279 CM091768.1 scf7180002754982 99.63 True local misassembly 2125410 2125934 337549 338073 CM091768.1 scf7180002754982 98.86 True local misassembly 2126594 2127255 338703 339364 CM091768.1 scf7180002754982 99.55 True indel: indel (<= 5bp) 2127256 2127959 339366 340069 CM091768.1 scf7180002754982 99.86 True fake: scaffold gap size wrong estimation (local) 2129439 2144381 340812 355396 CM091768.1 scf7180002754982 96.56 True relocation, scaffold gap is present, inconsistency = -14145 2145038 2146372 370198 371532 CM091768.1 scf7180002754982 99.18 True indel: indel (> 5bp) 2146390 2147362 371539 372511 CM091768.1 scf7180002754982 99.08 True indel: indel (<= 5bp) 2147364 2148293 372512 373441 CM091768.1 scf7180002754982 99.89 True local misassembly 2149003 2149793 374160 374950 CM091768.1 scf7180002754982 99.49 True indel: indel (<= 5bp) 2150140 2151270 375302 376432 CM091768.1 scf7180002754982 99.91 True local misassembly 2152056 2152592 377224 377760 CM091768.1 scf7180002754982 99.81 True local misassembly 2153779 2154401 378278 378900 CM091768.1 scf7180002754982 99.36 True indel: indel (> 5bp) 2154409 2155082 378901 379574 CM091768.1 scf7180002754982 99.11 True indel: indel (<= 5bp) 2155084 2156186 379575 380677 CM091768.1 scf7180002754982 98.28 True indel: indel (<= 5bp) 2156188 2157059 380678 381549 CM091768.1 scf7180002754982 99.77 True relocation, scaffold gap is present, inconsistency = -11415 2156795 2161823 392700 397758 CM091768.1 scf7180002754982 97.69 True local misassembly 2162100 2162769 398135 398805 CM091768.1 scf7180002754982 98.96 True local misassembly 2163615 2164883 399670 400937 CM091768.1 scf7180002754982 98.27 True local misassembly 2165555 2187513 401426 423268 CM091768.1 scf7180002754982 97.62 True fake: scaffold gap size wrong estimation (local) 2187500 2188660 425982 427142 CM091768.1 scf7180002754982 99.74 True indel: indel (<= 5bp) 2188669 2189196 427149 427676 CM091768.1 scf7180002754982 99.62 True local misassembly 2189758 2190557 428237 429036 CM091768.1 scf7180002754982 99.62 True indel: indel (<= 5bp) 2190558 2191456 429040 429938 CM091768.1 scf7180002754982 99.78 True local misassembly 2192418 2193170 430423 431175 CM091768.1 scf7180002754982 99.73 True fake: scaffold gap size wrong estimation (local) 2193387 2194110 431396 432112 CM091768.1 scf7180002754982 98.01 True indel: indel (<= 5bp) 2194178 2197829 432179 435822 CM091768.1 scf7180002754982 98.41 True fake: scaffold gap size wrong estimation (local) 2198161 2199001 436152 436992 CM091768.1 scf7180002754982 99.76 True indel: indel (<= 5bp) 2199003 2199926 436993 437916 CM091768.1 scf7180002754982 99.46 True local misassembly 2200849 2202748 437964 439863 CM091768.1 scf7180002754982 98.79 True fake: scaffold gap size wrong estimation (local) 2202955 2218598 440071 455327 CM091768.1 scf7180002754982 96.1 True relocation, scaffold gap is present, inconsistency = -10467 2218632 2255246 465828 502560 CM091768.1 scf7180002754982 97.43 True fake: scaffold gap size wrong estimation (local) 2255259 2267269 503225 514935 CM091768.1 scf7180002754982 96.14 True fake: scaffold gap size wrong estimation (local) 2267294 2287586 517845 538147 CM091768.1 scf7180002754982 99.02 True relocation, scaffold gap is present, inconsistency = -11733 2288109 2307829 550403 570023 CM091768.1 scf7180002754982 98.57 True local misassembly 2308093 2309054 570190 571151 CM091768.1 scf7180002754982 99.79 True indel: indel (<= 5bp) 2309056 2309755 571152 571851 CM091768.1 scf7180002754982 97.86 True indel: indel (<= 5bp) 2310062 2310657 572160 572755 CM091768.1 scf7180002754982 99.33 True local misassembly 2311698 2313031 573631 574964 CM091768.1 scf7180002754982 99.85 True indel: indel (<= 5bp) 2313033 2313640 574965 575572 CM091768.1 scf7180002754982 100.0 True local misassembly 2315343 2316165 576780 577602 CM091768.1 scf7180002754982 99.64 True indel: indel (> 5bp) 2316175 2317001 577603 578429 CM091768.1 scf7180002754982 98.91 True local misassembly 2318051 2318796 579471 580216 CM091768.1 scf7180002754982 99.87 True fake: scaffold gap size wrong estimation (local) 2318797 2319737 580230 581170 CM091768.1 scf7180002754982 98.3 True fake: scaffold gap size wrong estimation (local) 2321725 2322279 582687 583241 CM091768.1 scf7180002754982 100.0 True indel: indel (<= 5bp) 2322280 2322893 583243 583856 CM091768.1 scf7180002754982 99.67 True local misassembly 2325699 2327881 583975 586157 CM091768.1 scf7180002754982 99.5 True local misassembly 2329381 2330952 586470 588041 CM091768.1 scf7180002754982 99.36 True indel: indel (> 5bp) 2331341 2331986 588439 589084 CM091768.1 scf7180002754982 99.38 True local misassembly 2332588 2333116 589692 590220 CM091768.1 scf7180002754982 100.0 True indel: indel (<= 5bp) 2333118 2334457 590221 591560 CM091768.1 scf7180002754982 99.33 True indel: indel (> 5bp) 2334458 2335268 591571 592381 CM091768.1 scf7180002754982 99.26 True indel: indel (> 5bp) 2335282 2335806 592382 592906 CM091768.1 scf7180002754982 99.81 True indel: indel (> 5bp) 2336181 2337522 593345 594686 CM091768.1 scf7180002754982 98.81 True local misassembly 2339822 2341320 595814 597323 CM091768.1 scf7180002754982 98.54 True local misassembly 2342650 2343675 597900 598925 CM091768.1 scf7180002754982 99.71 True indel: indel (<= 5bp) 2343676 2344627 598927 599878 CM091768.1 scf7180002754982 99.58 True indel: indel (<= 5bp) 2344629 2345481 599879 600731 CM091768.1 scf7180002754982 98.36 True local misassembly 2346102 2347384 601063 602345 CM091768.1 scf7180002754982 99.38 True fake: scaffold gap size wrong estimation (extensive) 2348315 2350532 611494 613711 CM091768.1 scf7180002754982 99.23 True fake: scaffold gap size wrong estimation (local) 2352695 2353410 615834 616549 CM091768.1 scf7180002754982 99.44 True indel: indel (<= 5bp) 2353411 2355161 616551 618301 CM091768.1 scf7180002754982 99.31 True indel: indel (<= 5bp) 2355374 2356322 618517 619465 CM091768.1 scf7180002754982 98.74 True local misassembly 2357731 2359149 619947 621365 CM091768.1 scf7180002754982 99.08 True local misassembly 2360018 2361039 622275 623296 CM091768.1 scf7180002754982 99.71 True indel: indel (<= 5bp) 2361295 2361862 623548 624115 CM091768.1 scf7180002754982 99.47 True local misassembly 2363018 2364598 625296 626876 CM091768.1 scf7180002754982 99.43 True local misassembly 2366095 2366772 627525 628202 CM091768.1 scf7180002754982 97.79 True indel: indel (<= 5bp) 2366773 2367301 628204 628732 CM091768.1 scf7180002754982 100.0 True local misassembly 2369412 2370853 630857 632298 CM091768.1 scf7180002754982 99.58 True local misassembly 2371904 2372717 633353 634166 CM091768.1 scf7180002754982 99.51 True local misassembly 2373506 2374437 634301 635232 CM091768.1 scf7180002754982 99.68 True fake: scaffold gap size wrong estimation (local) 2376420 2376981 637234 637795 CM091768.1 scf7180002754982 99.47 True indel: indel (<= 5bp) 2377056 2378114 637871 638929 CM091768.1 scf7180002754982 99.53 True local misassembly 2378441 2379554 638930 640043 CM091768.1 scf7180002754982 99.55 True local misassembly 2381623 2382382 641968 642727 CM091768.1 scf7180002754982 99.61 True local misassembly 2384410 2385150 644748 645488 CM091768.1 scf7180002754982 99.33 True local misassembly 2386165 2386908 645874 646617 CM091768.1 scf7180002754982 99.19 True CONTIG scf7180002754982 647268 misassembled 9121347 9138293 16567 1 CM091763.1 scf7180002754983 97.57 True relocation, scaffold gap is present, inconsistency = -10576 9125896 9126645 22609 21845 CM091763.1 scf7180002754983 99.67 True fake: scaffold gap size wrong estimation (local) 9084020 9121336 63643 27178 CM091763.1 scf7180002754983 96.99 True fake: scaffold gap size wrong estimation (local) 9081371 9083186 65599 63784 CM091763.1 scf7180002754983 98.68 True fake: scaffold gap size wrong estimation (local) 9066874 9080962 80041 65945 CM091763.1 scf7180002754983 99.47 True relocation, scaffold gap is present, inconsistency = -11971 9060124 9066858 98751 92028 CM091763.1 scf7180002754983 98.83 True fake: scaffold gap size wrong estimation (local) 9058271 9059400 100328 99199 CM091763.1 scf7180002754983 99.91 True indel: stretch of mismatches 9057014 9057839 101585 100760 CM091763.1 scf7180002754983 99.39 True fake: scaffold gap size wrong estimation (local) 9037842 9056147 121830 103597 CM091763.1 scf7180002754983 96.62 True translocation, scaffold gap is present 12747244 12754628 127034 134425 CM091751.1 scf7180002754983 99.27 True relocation, scaffold gap is present, inconsistency = -12439139 315510 318546 134446 137483 CM091751.1 scf7180002754983 99.67 True fake: scaffold gap size wrong estimation (local) 318581 322951 140238 144607 CM091751.1 scf7180002754983 99.18 True fake: not a misassembly (possible transposable element) 12754598 12757696 144628 147724 CM091751.1 scf7180002754983 99.65 True fake: not a misassembly (possible transposable element) 324471 327504 149037 152071 CM091751.1 scf7180002754983 99.77 True relocation, scaffold gap is present, inconsistency = 12430156 12757681 12797705 152092 192110 CM091751.1 scf7180002754983 99.81 True relocation, scaffold gap is present, inconsistency = -31441 12775434 12776047 201280 201908 CM091751.1 scf7180002754983 100.0 True fake: scaffold gap size wrong estimation (local) 12798309 12814822 223206 239740 CM091751.1 scf7180002754983 99.35 True fake: scaffold gap size wrong estimation (local) 12815055 12854886 239925 279565 CM091751.1 scf7180002754983 98.69 True fake: scaffold gap size wrong estimation (extensive) 12854665 12894383 287582 327296 CM091751.1 scf7180002754983 99.72 True fake: scaffold gap size wrong estimation (local) 12895251 12911234 327414 343157 CM091751.1 scf7180002754983 97.55 True translocation 15861331 15889329 343212 371205 CM091755.1 scf7180002754983 99.4 True relocation, scaffold gap is present, inconsistency = -26920 15889357 15979258 398153 487684 CM091755.1 scf7180002754983 98.62 True relocation, scaffold gap is present, inconsistency = -23947 15959562 15960115 491935 492489 CM091755.1 scf7180002754983 99.56 True fake: scaffold gap size wrong estimation (local) 15979481 15983271 510818 514608 CM091755.1 scf7180002754983 99.16 True fake: scaffold gap size wrong estimation (local) 15983171 15986239 518304 521371 CM091755.1 scf7180002754983 98.92 True fake: scaffold gap size wrong estimation (local) 15986369 16048320 521480 583517 CM091755.1 scf7180002754983 99.14 True fake: scaffold gap size wrong estimation (local) 16048393 16088291 586110 627032 CM091755.1 scf7180002754983 99.23 True fake: scaffold gap size wrong estimation (local) 16089232 16138652 627283 676722 CM091755.1 scf7180002754983 99.68 True indel: indel (> 5bp) 16138681 16168235 676765 706316 CM091755.1 scf7180002754983 99.24 True fake: scaffold gap size wrong estimation (local) 16168998 16206606 709785 747509 CM091755.1 scf7180002754983 99.26 True fake: scaffold gap size wrong estimation (extensive) 16206639 16221047 755359 769738 CM091755.1 scf7180002754983 99.07 True relocation, scaffold gap is present, inconsistency = -14393 16221041 16240669 784125 803711 CM091755.1 scf7180002754983 99.24 True CONTIG scf7180002754983 803711 misassembled 5563447 5580348 16943 25 CM091768.1 scf7180002754984 99.59 True relocation, scaffold gap is present, inconsistency = 68172 5488318 5494951 23901 17267 CM091768.1 scf7180002754984 99.92 True fake: scaffold gap size wrong estimation (local) 5479507 5488300 37280 28483 CM091768.1 scf7180002754984 99.95 True fake: scaffold gap size wrong estimation (local) 5470503 5479422 51193 42273 CM091768.1 scf7180002754984 99.99 True translocation 13103702 13115555 51194 63042 CM091759.1 scf7180002754984 98.86 True relocation, scaffold gap is present, inconsistency = -17005 13115939 13181124 80431 145711 CM091759.1 scf7180002754984 99.33 True fake: scaffold gap size wrong estimation (extensive) 13181149 13190926 154775 164543 CM091759.1 scf7180002754984 99.4 True local misassembly 13191534 13242841 165373 216589 CM091759.1 scf7180002754984 99.08 True fake: scaffold gap size wrong estimation (local) 13243014 13272124 220747 249320 CM091759.1 scf7180002754984 97.3 True indel: indel (<= 5bp) 13272393 13301551 249590 278342 CM091759.1 scf7180002754984 97.84 True relocation, scaffold gap is present, inconsistency = -12936 13302365 13310055 292092 299866 CM091759.1 scf7180002754984 99.03 True fake: scaffold gap size wrong estimation (local) 13310296 13329463 300229 319292 CM091759.1 scf7180002754984 98.75 True indel: indel (> 5bp) 13329504 13330414 319320 320233 CM091759.1 scf7180002754984 98.8 True indel: indel (> 5bp) 13330571 13342263 320427 332049 CM091759.1 scf7180002754984 97.69 True fake: scaffold gap size wrong estimation (local) 13342278 13367482 334034 359263 CM091759.1 scf7180002754984 99.34 True relocation, scaffold gap is present, inconsistency = -10531 13367504 13374263 369816 376580 CM091759.1 scf7180002754984 99.6 True fake: scaffold gap size wrong estimation (local) 13374319 13399082 383254 407931 CM091759.1 scf7180002754984 99.19 True CONTIG scf7180002754984 407947 misassembled 976646 1003208 23 26504 CM091757.1 scf7180002754985 99.1 True fake: scaffold gap size wrong estimation (local) 1003202 1015094 28385 40286 CM091757.1 scf7180002754985 99.5 True fake: scaffold gap size wrong estimation (local) 1015405 1053478 44814 83006 CM091757.1 scf7180002754985 99.17 True relocation, scaffold gap is present, inconsistency = -22304 1053472 1061167 105304 112979 CM091757.1 scf7180002754985 99.01 True fake: scaffold gap size wrong estimation (local) 1061352 1081057 115476 135180 CM091757.1 scf7180002754985 99.16 True relocation, scaffold gap is present, inconsistency = -19664 1081065 1101656 154852 175197 CM091757.1 scf7180002754985 98.03 True fake: scaffold gap size wrong estimation (extensive) 1101720 1117953 183145 199384 CM091757.1 scf7180002754985 99.51 True fake: scaffold gap size wrong estimation (local) 1118069 1122800 199501 204233 CM091757.1 scf7180002754985 99.17 True translocation 14345457 14372931 204234 231781 CM091760.1 scf7180002754985 98.97 True fake: scaffold gap size wrong estimation (extensive) 14373226 14468776 239852 335493 CM091760.1 scf7180002754985 99.5 True relocation, scaffold gap is present, inconsistency = -59410 14409641 14410159 335768 336323 CM091760.1 scf7180002754985 98.45 True fake: scaffold gap size wrong estimation (local) 14468798 14583286 395300 509551 CM091760.1 scf7180002754985 99.19 True relocation, scaffold gap is present, inconsistency = -61305 14583296 14619476 570866 606990 CM091760.1 scf7180002754985 99.5 True fake: scaffold gap size wrong estimation (local) 14619578 14642609 611152 634178 CM091760.1 scf7180002754985 99.68 True relocation, scaffold gap is present, inconsistency = -21974 14643364 14710877 656907 724354 CM091760.1 scf7180002754985 99.6 True local misassembly 14711314 14743350 725102 757109 CM091760.1 scf7180002754985 99.85 True relocation, scaffold gap is present, inconsistency = -90484 14743792 14801942 848035 906127 CM091760.1 scf7180002754985 99.81 True relocation, scaffold gap is present, inconsistency = -58194 14756978 14757486 919357 919865 CM091760.1 scf7180002754985 100.0 True fake: scaffold gap size wrong estimation (local) 14801935 14874067 964368 1036479 CM091760.1 scf7180002754985 99.47 True fake: scaffold gap size wrong estimation (local) 14877878 14878588 1036517 1037228 CM091760.1 scf7180002754985 98.74 True local misassembly 14874316 14876179 1037249 1039105 CM091760.1 scf7180002754985 95.99 True fake: scaffold gap size wrong estimation (local) 14878433 14930094 1039312 1090820 CM091760.1 scf7180002754985 98.81 True relocation, scaffold gap is present, inconsistency = -51290 14930132 14996330 1142148 1208356 CM091760.1 scf7180002754985 99.81 True fake: scaffold gap size wrong estimation (local) 14996430 15059608 1208458 1271434 CM091760.1 scf7180002754985 98.86 True relocation, scaffold gap is present, inconsistency = -20626 15059632 15084626 1292084 1317032 CM091760.1 scf7180002754985 99.0 True local misassembly 15084727 15106655 1319252 1341026 CM091760.1 scf7180002754985 99.05 True relocation, inconsistency = 8597 15115253 15120494 1341027 1346262 CM091760.1 scf7180002754985 99.69 True CONTIG scf7180002754985 1370666 misassembled 93213 126424 411034 444246 CM091762.1 scf7180002754986 98.96 True local misassembly 132313 156950 444247 468907 CM091762.1 scf7180002754986 99.23 True relocation, scaffold gap is present, inconsistency = -31650 157226 204982 500833 548505 CM091762.1 scf7180002754986 99.52 True relocation, scaffold gap is present, inconsistency = -40610 205003 243475 589136 627259 CM091762.1 scf7180002754986 98.53 True relocation, scaffold gap is present, inconsistency = -35988 243486 380504 663258 794875 CM091762.1 scf7180002754986 95.23 True fake: scaffold gap size wrong estimation (local) 387976 397337 802064 811394 CM091762.1 scf7180002754986 99.17 True fake: scaffold gap size wrong estimation (extensive) 397376 405600 819933 828157 CM091762.1 scf7180002754986 99.6 True fake: scaffold gap size wrong estimation (local) 405712 438316 828250 860787 CM091762.1 scf7180002754986 99.2 True fake: scaffold gap size wrong estimation (extensive) 438311 527475 868180 956875 CM091762.1 scf7180002754986 98.88 True relocation, scaffold gap is present, inconsistency = -24597 527637 570673 981634 1024699 CM091762.1 scf7180002754986 99.42 True translocation, scaffold gap is present 4909171 4918048 1045276 1054187 CM091751.1 scf7180002754986 98.67 True translocation, scaffold gap is present 570550 573135 1061517 1064102 CM091762.1 scf7180002754986 99.3 True translocation, scaffold gap is present 4918270 4949273 1064381 1095378 CM091751.1 scf7180002754986 99.37 True translocation, scaffold gap is present 573013 604829 1097295 1129176 CM091762.1 scf7180002754986 99.33 True translocation, scaffold gap is present 4949360 5041118 1156935 1248653 CM091751.1 scf7180002754986 99.21 True relocation, scaffold gap is present, inconsistency = -92101 4977103 4977840 1276739 1277489 CM091751.1 scf7180002754986 100.0 True fake: scaffold gap size wrong estimation (local) 5004478 5005007 1304170 1304728 CM091751.1 scf7180002754986 97.73 True fake: scaffold gap size wrong estimation (local) 5041124 5047807 1341000 1347687 CM091751.1 scf7180002754986 98.25 True local misassembly 5048555 5368801 1348577 1668635 CM091751.1 scf7180002754986 99.14 True relocation, scaffold gap is present, inconsistency = -110706 5272357 5272984 1682897 1683524 CM091751.1 scf7180002754986 100.0 True fake: scaffold gap size wrong estimation (local) 5369614 5379708 1779553 1789704 CM091751.1 scf7180002754986 99.25 True CONTIG scf7180002754986 1789704 misassembled 15530824 15531666 1 843 CM091757.1 scf7180002754987 99.13 True translocation 8753735 8851929 844 99085 CM091756.1 scf7180002754987 99.55 True indel: indel (<= 5bp) 8851958 8871341 99112 118575 CM091756.1 scf7180002754987 98.96 True local misassembly 8871781 8940381 119176 187806 CM091756.1 scf7180002754987 99.28 True relocation, scaffold gap is present, inconsistency = -15824 8940714 8970109 203963 233408 CM091756.1 scf7180002754987 99.03 True fake: scaffold gap size wrong estimation (local) 8970291 8976065 233591 239253 CM091756.1 scf7180002754987 96.88 True fake: scaffold gap size wrong estimation (local) 8976071 8984204 240892 249024 CM091756.1 scf7180002754987 99.31 True fake: scaffold gap size wrong estimation (local) 8984271 8988944 251584 256207 CM091756.1 scf7180002754987 96.12 True fake: scaffold gap size wrong estimation (local) 8989397 8991854 257066 259523 CM091756.1 scf7180002754987 99.15 True fake: scaffold gap size wrong estimation (local) 8991938 8994771 261913 264763 CM091756.1 scf7180002754987 98.25 True fake: scaffold gap size wrong estimation (local) 8995358 9000369 264855 269849 CM091756.1 scf7180002754987 97.58 True local misassembly 9000996 9006817 270154 275982 CM091756.1 scf7180002754987 99.14 True relocation, scaffold gap is present, inconsistency = -11025 9006809 9007959 286999 288152 CM091756.1 scf7180002754987 99.31 True local misassembly 9008861 9011173 288979 291294 CM091756.1 scf7180002754987 98.71 True indel: stretch of mismatches 9011174 9047737 291295 327172 CM091756.1 scf7180002754987 97.41 True relocation, scaffold gap is present, inconsistency = -24768 9047788 9082072 351991 386274 CM091756.1 scf7180002754987 99.37 True local misassembly 9084190 9085348 388137 389303 CM091756.1 scf7180002754987 98.89 True relocation, scaffold gap is present, inconsistency = -24150 9085560 9104483 413665 432517 CM091756.1 scf7180002754987 98.38 True local misassembly 9104711 9114534 432628 442271 CM091756.1 scf7180002754987 96.63 True local misassembly 9115158 9120617 442272 447768 CM091756.1 scf7180002754987 97.44 True indel: indel (<= 5bp) 9120693 9123012 447845 450186 CM091756.1 scf7180002754987 98.54 True fake: scaffold gap size wrong estimation (local) 9123401 9125367 450596 452562 CM091756.1 scf7180002754987 99.34 True indel: indel (> 5bp) 9125487 9126322 452691 453526 CM091756.1 scf7180002754987 99.16 True local misassembly 9127459 9128846 454355 455742 CM091756.1 scf7180002754987 99.71 True local misassembly 9129211 9130281 455879 456949 CM091756.1 scf7180002754987 99.25 True local misassembly 9130448 9132881 456950 459383 CM091756.1 scf7180002754987 99.47 True indel: indel (<= 5bp) 9132882 9133526 459386 460030 CM091756.1 scf7180002754987 99.84 True local misassembly 9134219 9135876 460478 462135 CM091756.1 scf7180002754987 99.22 True indel: indel (> 5bp) 9136088 9137228 462339 463479 CM091756.1 scf7180002754987 99.74 True indel: indel (<= 5bp) 9137232 9137744 463480 463992 CM091756.1 scf7180002754987 98.25 True local misassembly 9138168 9139491 464049 465372 CM091756.1 scf7180002754987 99.02 True indel: indel (<= 5bp) 9139492 9140427 465374 466309 CM091756.1 scf7180002754987 98.93 True local misassembly 9141043 9141565 466928 467450 CM091756.1 scf7180002754987 98.85 True local misassembly 9142877 9143531 468720 469374 CM091756.1 scf7180002754987 99.08 True indel: indel (> 5bp) 9143995 9145816 469853 471674 CM091756.1 scf7180002754987 99.73 True relocation, scaffold gap is present, inconsistency = -12608 9146439 9148934 484905 487390 CM091756.1 scf7180002754987 98.41 True fake: scaffold gap size wrong estimation (local) 9149392 9163483 487616 501665 CM091756.1 scf7180002754987 98.84 True relocation, scaffold gap is present, inconsistency = -12028 9163469 9193795 513679 543958 CM091756.1 scf7180002754987 98.77 True indel: indel (> 5bp) 9193841 9219463 543980 569635 CM091756.1 scf7180002754987 99.28 True relocation, scaffold gap is present, inconsistency = -12887 9219463 9225030 582522 588091 CM091756.1 scf7180002754987 98.47 True fake: scaffold gap size wrong estimation (local) 9225159 9230867 588220 593932 CM091756.1 scf7180002754987 98.59 True fake: scaffold gap size wrong estimation (local) 9230995 9313581 594054 676474 CM091756.1 scf7180002754987 99.22 True relocation, scaffold gap is present, inconsistency = -73273 9313703 9320320 749869 756504 CM091756.1 scf7180002754987 99.29 True fake: scaffold gap size wrong estimation (local) 9320350 9330029 762991 772673 CM091756.1 scf7180002754987 99.6 True indel: indel (> 5bp) 9330200 9366906 772850 809576 CM091756.1 scf7180002754987 99.39 True fake: scaffold gap size wrong estimation (local) 9367035 9389294 813465 835334 CM091756.1 scf7180002754987 97.19 True local misassembly 9389962 9395036 836043 841098 CM091756.1 scf7180002754987 98.76 True relocation, scaffold gap is present, inconsistency = -21681 9394921 9436633 862664 903935 CM091756.1 scf7180002754987 98.32 True relocation, scaffold gap is present, inconsistency = -35130 9436631 9452770 939063 954893 CM091756.1 scf7180002754987 97.2 True indel: indel (<= 5bp) 9452857 9465328 954981 967416 CM091756.1 scf7180002754987 99.09 True relocation, scaffold gap is present, inconsistency = -20004 9465429 9466314 987521 988406 CM091756.1 scf7180002754987 99.1 True indel: indel (<= 5bp) 9466409 9524640 988503 1045074 CM091756.1 scf7180002754987 96.31 True relocation, scaffold gap is present, inconsistency = -10456 9524852 9575822 1055742 1106427 CM091756.1 scf7180002754987 98.43 True relocation, scaffold gap is present, inconsistency = -19775 9576126 9603783 1126506 1153195 CM091756.1 scf7180002754987 95.41 True relocation, scaffold gap is present, inconsistency = -12751 9603782 9640514 1165945 1201563 CM091756.1 scf7180002754987 96.16 True indel: indel (<= 5bp) 9640566 9670208 1201614 1230938 CM091756.1 scf7180002754987 98.49 True fake: scaffold gap size wrong estimation (local) 9670584 9777398 1234256 1340942 CM091756.1 scf7180002754987 98.76 True indel: indel (> 5bp) 9777507 9782386 1340986 1345885 CM091756.1 scf7180002754987 98.47 True relocation, scaffold gap is present, inconsistency = -27640 9783373 9800281 1374512 1391402 CM091756.1 scf7180002754987 98.6 True relocation, scaffold gap is present, inconsistency = -16930 9800338 9819142 1408389 1426633 CM091756.1 scf7180002754987 95.54 True indel: indel (> 5bp) 9819623 9820664 1427125 1428166 CM091756.1 scf7180002754987 99.42 True local misassembly 9821543 9822234 1428213 1428904 CM091756.1 scf7180002754987 96.53 True local misassembly 9822856 9823439 1429533 1430116 CM091756.1 scf7180002754987 99.66 True indel: indel (<= 5bp) 9823440 9824262 1430118 1430940 CM091756.1 scf7180002754987 98.54 True indel: indel (<= 5bp) 9824631 9828810 1431312 1435491 CM091756.1 scf7180002754987 99.86 True indel: indel (<= 5bp) 9829306 9829813 1435989 1436496 CM091756.1 scf7180002754987 100.0 True fake: scaffold gap size wrong estimation (extensive) 9829977 9842759 1444986 1457865 CM091756.1 scf7180002754987 98.57 True relocation, scaffold gap is present, inconsistency = 17692 9872037 9872734 1469451 1470148 CM091756.1 scf7180002754987 97.89 True relocation, inconsistency = -29713 9843022 9845753 1470149 1472881 CM091756.1 scf7180002754987 99.49 True CONTIG scf7180002754987 1472881 misassembled 7390002 7432422 1 42417 CM091765.1 scf7180002754988 98.93 True fake: scaffold gap size wrong estimation (local) 7432502 7481647 45365 94542 CM091765.1 scf7180002754988 99.63 True indel: indel (<= 5bp) 7481809 7484870 94708 97769 CM091765.1 scf7180002754988 98.34 True relocation, scaffold gap is present, inconsistency = -51477 7484861 7517483 149237 181879 CM091765.1 scf7180002754988 99.68 True relocation, scaffold gap is present, inconsistency = -18211 7518041 7521041 200648 203646 CM091765.1 scf7180002754988 99.27 True fake: scaffold gap size wrong estimation (local) 7521939 7536723 204544 219323 CM091765.1 scf7180002754988 99.63 True indel: indel (> 5bp) 7536758 7626876 219384 308477 CM091765.1 scf7180002754988 97.84 True indel: indel (> 5bp) 7626904 7643976 308517 325385 CM091765.1 scf7180002754988 97.19 True fake: scaffold gap size wrong estimation (local) 7644668 7648890 327791 332024 CM091765.1 scf7180002754988 99.17 True fake: scaffold gap size wrong estimation (local) 7648951 7684314 336287 371728 CM091765.1 scf7180002754988 98.44 True relocation, scaffold gap is present, inconsistency = -14819 7685008 7685582 387241 387815 CM091765.1 scf7180002754988 99.65 True fake: scaffold gap size wrong estimation (local) 7686137 7689895 388294 392056 CM091765.1 scf7180002754988 98.78 True translocation, scaffold gap is present 8193352 8198161 397329 392519 CM091759.1 scf7180002754988 99.77 True fake: scaffold gap size wrong estimation (local) 8188928 8193143 404274 400103 CM091759.1 scf7180002754988 98.55 True translocation, scaffold gap is present 7690155 7694352 404657 408860 CM091765.1 scf7180002754988 99.24 True translocation, scaffold gap is present 8180385 8188833 420482 412020 CM091759.1 scf7180002754988 99.67 True translocation, scaffold gap is present 7694370 7696825 420503 422961 CM091765.1 scf7180002754988 99.19 True fake: scaffold gap size wrong estimation (local) 7696832 7705173 425021 433432 CM091765.1 scf7180002754988 98.32 True fake: scaffold gap size wrong estimation (local) 7706837 7707379 439598 440140 CM091765.1 scf7180002754988 98.39 True relocation, inconsistency = 47454 7754834 7783090 440141 468290 CM091765.1 scf7180002754988 98.96 True relocation, scaffold gap is present, inconsistency = -21734 7783140 7798352 490074 505305 CM091765.1 scf7180002754988 99.3 True indel: indel (> 5bp) 7798450 7905098 505421 612312 CM091765.1 scf7180002754988 98.94 True relocation, scaffold gap is present, inconsistency = -13453 7905445 7906083 626112 626750 CM091765.1 scf7180002754988 100.0 True fake: scaffold gap size wrong estimation (local) 7909005 7953108 627289 679112 CM091765.1 scf7180002754988 96.32 True fake: scaffold gap size wrong estimation (extensive) 7952675 7969399 686769 702885 CM091765.1 scf7180002754988 95.81 True fake: scaffold gap size wrong estimation (local) 7979612 7985944 707071 713383 CM091765.1 scf7180002754988 99.3 True fake: scaffold gap size wrong estimation (local) 7986039 8081478 713476 808760 CM091765.1 scf7180002754988 98.99 True fake: scaffold gap size wrong estimation (local) 8082496 8091911 812512 821943 CM091765.1 scf7180002754988 99.15 True relocation, scaffold gap is present, inconsistency = -10239 8093298 8148125 833569 888422 CM091765.1 scf7180002754988 99.08 True indel: indel (> 5bp) 8148205 8256980 888529 997342 CM091765.1 scf7180002754988 99.58 True relocation, scaffold gap is present, inconsistency = -58095 8256919 8264875 1055376 1063352 CM091765.1 scf7180002754988 99.55 True CONTIG scf7180002754988 1063352 misassembled 15256625 15319859 63300 1 CM091753.1 scf7180002754989 99.08 True relocation, scaffold gap is present, inconsistency = -35643 15248345 15256659 107233 98909 CM091753.1 scf7180002754989 99.05 True indel: indel (<= 5bp) 15194087 15248290 161518 107287 CM091753.1 scf7180002754989 99.32 True fake: scaffold gap size wrong estimation (local) 15176650 15193420 182007 165213 CM091753.1 scf7180002754989 99.26 True translocation, scaffold gap is present 8635876 8636979 184387 185490 CM091767.1 scf7180002754989 100.0 True translocation, scaffold gap is present 5411286 5413586 187811 185511 CM091768.1 scf7180002754989 99.46 True translocation 15155256 15176734 209301 187812 CM091753.1 scf7180002754989 99.38 True indel: indel (> 5bp) 15140452 15155178 224116 209387 CM091753.1 scf7180002754989 99.42 True relocation, scaffold gap is present, inconsistency = -36528 15078728 15140222 322420 260874 CM091753.1 scf7180002754989 99.02 True relocation, scaffold gap is present, inconsistency = -51280 15064841 15078330 387544 374098 CM091753.1 scf7180002754989 98.9 True relocation, scaffold gap is present, inconsistency = -12311 14917114 15064832 546757 399864 CM091753.1 scf7180002754989 98.75 True translocation, scaffold gap is present 1114766 1116563 554106 555904 CM091761.1 scf7180002754989 99.94 True fake: not a misassembly (possible transposable element) 14915281 14917152 557805 555934 CM091753.1 scf7180002754989 98.56 True fake: not a misassembly (possible transposable element) 1116577 1119998 559253 562679 CM091761.1 scf7180002754989 99.42 True translocation, scaffold gap is present 14909176 14915390 568908 562700 CM091753.1 scf7180002754989 99.2 True translocation, scaffold gap is present 1119898 1125902 571987 578005 CM091761.1 scf7180002754989 99.95 True translocation, scaffold gap is present 14899816 14909223 589781 580376 CM091753.1 scf7180002754989 99.42 True translocation, scaffold gap is present 1125927 1133556 591598 599220 CM091761.1 scf7180002754989 99.58 True translocation, scaffold gap is present 14886455 14900046 617102 603479 CM091753.1 scf7180002754989 99.52 True translocation, scaffold gap is present 1133627 1146477 617123 629981 CM091761.1 scf7180002754989 99.03 True translocation 14841203 14884005 673190 630403 CM091753.1 scf7180002754989 99.53 True translocation, scaffold gap is present 3675723 3683875 706777 698613 CM091756.1 scf7180002754989 99.21 True fake: scaffold gap size wrong estimation (extensive) 3644029 3675379 745616 714287 CM091756.1 scf7180002754989 99.46 True translocation, scaffold gap is present 14838538 14841178 765527 762872 CM091753.1 scf7180002754989 98.98 True fake: scaffold gap size wrong estimation (local) 14828159 14838565 778220 768061 CM091753.1 scf7180002754989 96.27 True translocation, scaffold gap is present 3638278 3644042 787021 781238 CM091756.1 scf7180002754989 99.15 True translocation, scaffold gap is present 14822918 14826864 793946 789993 CM091753.1 scf7180002754989 98.11 True translocation, scaffold gap is present 3635319 3636012 799526 798833 CM091756.1 scf7180002754989 99.42 True indel: indel (<= 5bp) 3633569 3635318 801277 799528 CM091756.1 scf7180002754989 98.86 True indel: indel (<= 5bp) 3632747 3633568 802100 801279 CM091756.1 scf7180002754989 99.88 True fake: not a misassembly (possible transposable element) 14819396 14822710 806918 803602 CM091753.1 scf7180002754989 99.28 True fake: not a misassembly (possible transposable element) 3623748 3632461 817003 808294 CM091756.1 scf7180002754989 99.34 True translocation, scaffold gap is present 14813130 14818601 823659 818198 CM091753.1 scf7180002754989 98.67 True indel: indel (> 5bp) 14809893 14813059 826893 823720 CM091753.1 scf7180002754989 99.15 True translocation, scaffold gap is present 3616217 3623778 841157 833608 CM091756.1 scf7180002754989 99.17 True fake: scaffold gap size wrong estimation (extensive) 3552642 3616217 912155 848606 CM091756.1 scf7180002754989 99.56 True relocation, scaffold gap is present, inconsistency = -63135 3414366 3552658 1112081 975274 CM091756.1 scf7180002754989 98.51 True fake: scaffold gap size wrong estimation (local) 3412589 3414244 1113835 1112180 CM091756.1 scf7180002754989 99.82 True local misassembly 3407907 3408483 1115845 1115269 CM091756.1 scf7180002754989 98.61 True fake: scaffold gap size wrong estimation (local) 3357747 3401343 1159459 1115866 CM091756.1 scf7180002754989 99.81 True relocation, scaffold gap is present, inconsistency = -41294 3327419 3357730 1230930 1200770 CM091756.1 scf7180002754989 98.99 True fake: scaffold gap size wrong estimation (local) 3326696 3327427 1231856 1231125 CM091756.1 scf7180002754989 99.59 True fake: scaffold gap size wrong estimation (local) 3324300 3326181 1234044 1232163 CM091756.1 scf7180002754989 99.84 True fake: scaffold gap size wrong estimation (local) 3239854 3324310 1320285 1235819 CM091756.1 scf7180002754989 99.34 True relocation, scaffold gap is present, inconsistency = -15872 3211013 3239873 1365025 1336138 CM091756.1 scf7180002754989 99.15 True relocation, scaffold gap is present, inconsistency = -11429 3202270 3211479 1385231 1375988 CM091756.1 scf7180002754989 99.16 True indel: indel (<= 5bp) 3181907 3202223 1405605 1385280 CM091756.1 scf7180002754989 99.09 True indel: indel (<= 5bp) 3172476 3181825 1415027 1405685 CM091756.1 scf7180002754989 99.57 True translocation, scaffold gap is present 16663517 16666657 1419893 1423035 CM091751.1 scf7180002754989 99.71 True fake: scaffold gap size wrong estimation (local) 16667145 16676155 1425570 1434582 CM091751.1 scf7180002754989 99.7 True translocation, scaffold gap is present 3139464 3172358 1472861 1440006 CM091756.1 scf7180002754989 99.36 True translocation 16705563 16706819 1472862 1474118 CM091751.1 scf7180002754989 100.0 True relocation, scaffold gap is present, inconsistency = -33549 16676161 16705268 1477009 1506171 CM091751.1 scf7180002754989 99.51 True fake: scaffold gap size wrong estimation (local) 16706635 16820210 1507703 1620975 CM091751.1 scf7180002754989 99.48 True relocation, scaffold gap is present, inconsistency = -58059 16820580 16835520 1679404 1694342 CM091751.1 scf7180002754989 99.89 True relocation, scaffold gap is present, inconsistency = -14535 16835491 16857924 1708848 1731295 CM091751.1 scf7180002754989 99.81 True fake: scaffold gap size wrong estimation (extensive) 16857537 16877768 1740623 1760895 CM091751.1 scf7180002754989 99.78 True fake: scaffold gap size wrong estimation (local) 16877506 17009011 1766831 1898422 CM091751.1 scf7180002754989 99.27 True indel: indel (> 5bp) 17009076 17115859 1898503 2005277 CM091751.1 scf7180002754989 99.89 True CONTIG scf7180002754989 2005277 misassembled 1315879 1327721 1 11584 CM091757.1 scf7180002754990 96.92 True fake: scaffold gap size wrong estimation (local) 1327733 1369707 14324 56334 CM091757.1 scf7180002754990 99.16 True fake: scaffold gap size wrong estimation (local) 1370035 1379367 56552 65961 CM091757.1 scf7180002754990 98.77 True fake: scaffold gap size wrong estimation (local) 1380334 1387978 65982 73630 CM091757.1 scf7180002754990 99.49 True indel: indel (> 5bp) 1388120 1402069 73790 87744 CM091757.1 scf7180002754990 99.5 True relocation, scaffold gap is present, inconsistency = -21683 1402096 1430689 109454 138052 CM091757.1 scf7180002754990 99.48 True indel: indel (> 5bp) 1430840 1441086 138220 148509 CM091757.1 scf7180002754990 99.29 True fake: scaffold gap size wrong estimation (local) 1441433 1442322 152436 153326 CM091757.1 scf7180002754990 99.66 True indel: indel (> 5bp) 1442361 1446095 153355 157070 CM091757.1 scf7180002754990 98.72 True fake: scaffold gap size wrong estimation (local) 1446973 1487114 157854 197878 CM091757.1 scf7180002754990 98.8 True relocation, scaffold gap is present, inconsistency = -30825 1474263 1474909 215852 216524 CM091757.1 scf7180002754990 98.72 True fake: scaffold gap size wrong estimation (local) 1487152 1495812 228778 237424 CM091757.1 scf7180002754990 98.83 True local misassembly 1496194 1550586 237611 291835 CM091757.1 scf7180002754990 98.9 True relocation, scaffold gap is present, inconsistency = -37680 1543879 1544586 322808 323519 CM091757.1 scf7180002754990 99.32 True fake: scaffold gap size wrong estimation (local) 1551353 1595968 329055 373608 CM091757.1 scf7180002754990 99.27 True relocation, scaffold gap is present, inconsistency = -43642 1596772 1664379 418054 485812 CM091757.1 scf7180002754990 98.81 True relocation, scaffold gap is present, inconsistency = -59050 1664522 1748162 545005 628301 CM091757.1 scf7180002754990 99.01 True fake: scaffold gap size wrong estimation (local) 1748769 1797281 628659 676559 CM091757.1 scf7180002754990 97.88 True fake: scaffold gap size wrong estimation (local) 1797361 1802565 676655 681836 CM091757.1 scf7180002754990 98.85 True indel: indel (> 5bp) 1802623 1812046 681900 691319 CM091757.1 scf7180002754990 99.41 True fake: scaffold gap size wrong estimation (local) 1812048 1817071 697100 702125 CM091757.1 scf7180002754990 99.46 True fake: scaffold gap size wrong estimation (local) 1817370 1827186 703931 713711 CM091757.1 scf7180002754990 98.97 True fake: scaffold gap size wrong estimation (local) 1827528 1849838 719910 742259 CM091757.1 scf7180002754990 99.36 True relocation, scaffold gap is present, inconsistency = -10021 1850447 1857753 752889 760197 CM091757.1 scf7180002754990 99.36 True fake: scaffold gap size wrong estimation (local) 1858040 1904944 764278 810873 CM091757.1 scf7180002754990 98.73 True indel: indel (> 5bp) 1904990 1905745 810932 811692 CM091757.1 scf7180002754990 98.16 True fake: scaffold gap size wrong estimation (local) 1905960 1912833 814463 821422 CM091757.1 scf7180002754990 98.21 True fake: scaffold gap size wrong estimation (local) 1912932 1917209 827545 831824 CM091757.1 scf7180002754990 99.6 True CONTIG scf7180002754990 831824 misassembled 6222295 6250266 28008 1 CM091760.1 scf7180002754991 99.25 True translocation, scaffold gap is present 15214891 15256393 28029 69245 CM091755.1 scf7180002754991 98.63 True indel: indel (<= 5bp) 15256440 15288399 69289 101284 CM091755.1 scf7180002754991 99.76 True indel: indel (> 5bp) 15288626 15329240 101450 142179 CM091755.1 scf7180002754991 97.84 True relocation, scaffold gap is present, inconsistency = 7032326 8193788 8256260 204030 142219 CM091755.1 scf7180002754991 98.02 True fake: scaffold gap size wrong estimation (local) 8191964 8193684 205833 204112 CM091755.1 scf7180002754991 99.3 True fake: scaffold gap size wrong estimation (local) 8189714 8191667 208093 206140 CM091755.1 scf7180002754991 97.03 True fake: scaffold gap size wrong estimation (local) 8187492 8189137 210311 208666 CM091755.1 scf7180002754991 100.0 True indel: indel (<= 5bp) 8186965 8187491 210840 210314 CM091755.1 scf7180002754991 98.48 True fake: scaffold gap size wrong estimation (local) 8184289 8184938 214140 213491 CM091755.1 scf7180002754991 100.0 True indel: stretch of mismatches 8157146 8184288 240120 214141 CM091755.1 scf7180002754991 95.08 True fake: scaffold gap size wrong estimation (local) 8136577 8156787 260384 240217 CM091755.1 scf7180002754991 98.99 True fake: scaffold gap size wrong estimation (local) 8071756 8136451 325381 260501 CM091755.1 scf7180002754991 98.99 True relocation, scaffold gap is present, inconsistency = -22102 8054176 8071476 364481 347763 CM091755.1 scf7180002754991 95.09 True indel: indel (> 5bp) 8013779 8053921 404254 364706 CM091755.1 scf7180002754991 97.66 True local misassembly 7942653 8013662 475498 404463 CM091755.1 scf7180002754991 99.56 True indel: indel (> 5bp) 7939142 7942618 479031 475544 CM091755.1 scf7180002754991 99.51 True indel: indel (> 5bp) 7938370 7939016 479817 479171 CM091755.1 scf7180002754991 99.54 True local misassembly 7935395 7937258 482790 480927 CM091755.1 scf7180002754991 99.95 True indel: indel (<= 5bp) 7934585 7935393 483599 482791 CM091755.1 scf7180002754991 100.0 True indel: indel (<= 5bp) 7930100 7934584 488085 483601 CM091755.1 scf7180002754991 99.91 True indel: indel (<= 5bp) 7928730 7930098 489454 488086 CM091755.1 scf7180002754991 100.0 True local misassembly 7927386 7928008 490796 490174 CM091755.1 scf7180002754991 99.84 True indel: indel (<= 5bp) 7926748 7927384 491433 490797 CM091755.1 scf7180002754991 99.84 True indel: indel (<= 5bp) 7924828 7926747 493356 491437 CM091755.1 scf7180002754991 99.95 True local misassembly 7922810 7924143 495373 494040 CM091755.1 scf7180002754991 98.13 True indel: indel (> 5bp) 7921704 7922794 496464 495374 CM091755.1 scf7180002754991 99.73 True indel: indel (<= 5bp) 7919866 7921702 498301 496465 CM091755.1 scf7180002754991 99.89 True indel: indel (<= 5bp) 7918983 7919865 499185 498303 CM091755.1 scf7180002754991 100.0 True indel: indel (<= 5bp) 7918445 7918981 499722 499186 CM091755.1 scf7180002754991 99.81 True fake: scaffold gap size wrong estimation (local) 7917705 7918444 506303 505564 CM091755.1 scf7180002754991 99.46 True indel: indel (<= 5bp) 7917077 7917703 506930 506304 CM091755.1 scf7180002754991 99.84 True indel: indel (<= 5bp) 7916307 7917076 507701 506932 CM091755.1 scf7180002754991 99.74 True indel: indel (<= 5bp) 7914529 7916304 509477 507702 CM091755.1 scf7180002754991 99.61 True indel: indel (<= 5bp) 7911512 7914528 512495 509479 CM091755.1 scf7180002754991 99.7 True local misassembly 7908305 7910898 515706 513113 CM091755.1 scf7180002754991 99.38 True translocation, scaffold gap is present 1763124 1770317 523383 516172 CM091753.1 scf7180002754991 98.63 True indel: indel (> 5bp) 1742912 1762929 543655 523626 CM091753.1 scf7180002754991 99.68 True translocation, scaffold gap is present 7643402 7907874 806528 543726 CM091755.1 scf7180002754991 98.54 True indel: indel (> 5bp) 7599008 7643201 849363 806705 CM091755.1 scf7180002754991 95.87 True indel: indel (> 5bp) 7538108 7598917 909874 849443 CM091755.1 scf7180002754991 98.59 True translocation 41712 132904 999672 909884 CM091754.1 scf7180002754991 97.74 True CONTIG scf7180002754991 999672 misassembled 10847329 10854614 7296 1 CM091762.1 scf7180002754992 98.92 True indel: indel (> 5bp) 10778890 10847275 75765 7364 CM091762.1 scf7180002754992 99.11 True fake: scaffold gap size wrong estimation (local) 10761195 10778644 93363 76276 CM091762.1 scf7180002754992 96.62 True fake: scaffold gap size wrong estimation (local) 10749219 10761074 108769 96992 CM091762.1 scf7180002754992 98.58 True fake: scaffold gap size wrong estimation (local) 10733002 10749257 131382 115126 CM091762.1 scf7180002754992 99.39 True fake: scaffold gap size wrong estimation (local) 10647064 10732617 217350 131743 CM091762.1 scf7180002754992 99.21 True indel: indel (> 5bp) 10622591 10647002 241844 217434 CM091762.1 scf7180002754992 99.35 True indel: indel (> 5bp) 10620604 10622350 243861 242112 CM091762.1 scf7180002754992 98.8 True relocation, scaffold gap is present, inconsistency = -109249 10713871 10714551 259844 259163 CM091762.1 scf7180002754992 99.81 True fake: not a misassembly (possible transposable element) 2055572 2058186 350859 353473 CM091764.1 scf7180002754992 99.92 True fake: not a misassembly (possible transposable element) 10578762 10620616 397621 355757 CM091762.1 scf7180002754992 99.43 True indel: indel (> 5bp) 10525281 10578709 451137 397663 CM091762.1 scf7180002754992 99.39 True translocation, scaffold gap is present 2058811 2062422 451550 455161 CM091764.1 scf7180002754992 100.0 True translocation, scaffold gap is present 10421929 10525294 654089 550490 CM091762.1 scf7180002754992 99.23 True relocation, scaffold gap is present, inconsistency = -19527 10384611 10421902 710902 673643 CM091762.1 scf7180002754992 99.3 True fake: scaffold gap size wrong estimation (extensive) 10318161 10384603 786814 720430 CM091762.1 scf7180002754992 99.27 True relocation, scaffold gap is present, inconsistency = -16602 10316146 10318131 805431 803446 CM091762.1 scf7180002754992 99.9 True indel: indel (<= 5bp) 10314723 10316145 806855 805433 CM091762.1 scf7180002754992 99.16 True indel: indel (<= 5bp) 10313910 10314722 807669 806857 CM091762.1 scf7180002754992 99.88 True indel: indel (<= 5bp) 10313350 10313908 808228 807670 CM091762.1 scf7180002754992 100.0 True indel: indel (<= 5bp) 10311059 10312917 810514 808656 CM091762.1 scf7180002754992 99.68 True indel: indel (<= 5bp) 10310036 10311057 811536 810515 CM091762.1 scf7180002754992 99.51 True indel: indel (<= 5bp) 10309176 10310027 812398 811547 CM091762.1 scf7180002754992 99.88 True indel: indel (<= 5bp) 10308215 10309175 813360 812400 CM091762.1 scf7180002754992 99.69 True local misassembly 10305815 10306813 815728 814730 CM091762.1 scf7180002754992 99.7 True indel: indel (<= 5bp) 10302241 10305813 819301 815729 CM091762.1 scf7180002754992 99.8 True indel: indel (<= 5bp) 10300712 10302240 820834 819306 CM091762.1 scf7180002754992 99.67 True indel: indel (<= 5bp) 10300093 10300710 821452 820835 CM091762.1 scf7180002754992 99.68 True indel: indel (<= 5bp) 10299387 10300092 822159 821454 CM091762.1 scf7180002754992 99.58 True relocation, scaffold gap is present, inconsistency = -18324 10298217 10299015 841653 840855 CM091762.1 scf7180002754992 99.87 True indel: indel (<= 5bp) 10297492 10298060 842380 841812 CM091762.1 scf7180002754992 100.0 True indel: indel (<= 5bp) 10296432 10297488 843437 842381 CM091762.1 scf7180002754992 100.0 True indel: indel (<= 5bp) 10295893 10296431 843977 843439 CM091762.1 scf7180002754992 99.26 True indel: indel (<= 5bp) 10295118 10295892 844753 843979 CM091762.1 scf7180002754992 99.48 True local misassembly 10293626 10294280 846250 845596 CM091762.1 scf7180002754992 99.85 True local misassembly 10292162 10292989 847725 846898 CM091762.1 scf7180002754992 99.64 True local misassembly 10290302 10291522 849589 848369 CM091762.1 scf7180002754992 99.84 True indel: indel (<= 5bp) 10289098 10290301 850794 849591 CM091762.1 scf7180002754992 99.58 True indel: indel (<= 5bp) 10286803 10288952 853088 850939 CM091762.1 scf7180002754992 99.72 True local misassembly 10284728 10286080 855165 853813 CM091762.1 scf7180002754992 99.78 True fake: scaffold gap size wrong estimation (local) 10280011 10282212 859876 857675 CM091762.1 scf7180002754992 99.77 True local misassembly 10278064 10278801 861837 861100 CM091762.1 scf7180002754992 98.37 True indel: indel (<= 5bp) 10276724 10277608 863179 862295 CM091762.1 scf7180002754992 99.32 True indel: indel (<= 5bp) 10275982 10276719 863917 863180 CM091762.1 scf7180002754992 99.73 True indel: indel (<= 5bp) 10275469 10275981 864431 863919 CM091762.1 scf7180002754992 99.42 True indel: stretch of mismatches 10274548 10275061 865352 864839 CM091762.1 scf7180002754992 99.81 True indel: indel (<= 5bp) 10272658 10274108 867238 865788 CM091762.1 scf7180002754992 99.45 True indel: indel (<= 5bp) 10271264 10272656 868631 867239 CM091762.1 scf7180002754992 96.34 True indel: indel (> 5bp) 10268820 10271078 871083 868825 CM091762.1 scf7180002754992 99.91 True fake: scaffold gap size wrong estimation (local) 10267698 10268240 872032 871490 CM091762.1 scf7180002754992 99.63 True local misassembly 10265617 10266525 874126 873218 CM091762.1 scf7180002754992 99.34 True fake: scaffold gap size wrong estimation (local) 10253717 10265569 888342 876389 CM091762.1 scf7180002754992 98.65 True fake: scaffold gap size wrong estimation (local) 10251986 10254047 890709 888648 CM091762.1 scf7180002754992 99.61 True fake: scaffold gap size wrong estimation (local) 10226624 10250102 914162 890730 CM091762.1 scf7180002754992 99.48 True relocation, scaffold gap is present, inconsistency = -14100 10191405 10226621 963357 928265 CM091762.1 scf7180002754992 99.09 True indel: indel (> 5bp) 10136815 10191402 1017596 963386 CM091762.1 scf7180002754992 98.58 True indel: indel (> 5bp) 10127279 10136686 1027165 1017763 CM091762.1 scf7180002754992 99.07 True relocation, scaffold gap is present, inconsistency = -56460 10108603 10126954 1102278 1083950 CM091762.1 scf7180002754992 98.79 True fake: scaffold gap size wrong estimation (local) 10037153 10108624 1178354 1106893 CM091762.1 scf7180002754992 99.34 True relocation, scaffold gap is present, inconsistency = -68151 10069507 10070030 1214173 1213628 CM091762.1 scf7180002754992 100.0 True fake: scaffold gap size wrong estimation (local) 10022547 10036969 1261142 1246731 CM091762.1 scf7180002754992 99.05 True fake: scaffold gap size wrong estimation (local) 10017765 10022410 1265922 1261265 CM091762.1 scf7180002754992 99.52 True indel: indel (> 5bp) 9989460 10017716 1294319 1265984 CM091762.1 scf7180002754992 99.43 True local misassembly 9956530 9988741 1327354 1295088 CM091762.1 scf7180002754992 99.18 True fake: scaffold gap size wrong estimation (local) 9875090 9956485 1413348 1331704 CM091762.1 scf7180002754992 99.19 True fake: scaffold gap size wrong estimation (local) 9860500 9874342 1427672 1413694 CM091762.1 scf7180002754992 98.4 True fake: scaffold gap size wrong estimation (local) 9823551 9860543 1464553 1427729 CM091762.1 scf7180002754992 98.88 True fake: scaffold gap size wrong estimation (local) 9774903 9823533 1518788 1470031 CM091762.1 scf7180002754992 99.52 True indel: indel (> 5bp) 9726224 9774844 1567530 1518912 CM091762.1 scf7180002754992 99.43 True relocation, scaffold gap is present, inconsistency = -42742 9715412 9725961 1621054 1610535 CM091762.1 scf7180002754992 99.2 True relocation, scaffold gap is present, inconsistency = -10674 9625137 9715315 1721984 1631825 CM091762.1 scf7180002754992 99.39 True relocation, scaffold gap is present, inconsistency = -15750 9579783 9624944 1783120 1737927 CM091762.1 scf7180002754992 99.56 True indel: stretch of mismatches 9575139 9579700 1787768 1783203 CM091762.1 scf7180002754992 99.3 True relocation, scaffold gap is present, inconsistency = -45351 9569501 9573399 1838752 1834859 CM091762.1 scf7180002754992 99.28 True fake: scaffold gap size wrong estimation (local) 9566742 9568572 1844138 1842317 CM091762.1 scf7180002754992 98.04 True fake: scaffold gap size wrong estimation (local) 9565942 9566513 1844941 1844370 CM091762.1 scf7180002754992 99.3 True indel: indel (<= 5bp) 9564850 9565941 1846034 1844943 CM091762.1 scf7180002754992 99.54 True indel: indel (<= 5bp) 9563324 9564849 1847561 1846036 CM091762.1 scf7180002754992 99.8 True indel: indel (> 5bp) 9562729 9563323 1848162 1847568 CM091762.1 scf7180002754992 99.83 True fake: scaffold gap size wrong estimation (local) 9559111 9559647 1849932 1849396 CM091762.1 scf7180002754992 99.26 True indel: indel (<= 5bp) 9557776 9559110 1851268 1849934 CM091762.1 scf7180002754992 99.1 True indel: stretch of mismatches 9556090 9557641 1852954 1851403 CM091762.1 scf7180002754992 99.48 True fake: scaffold gap size wrong estimation (local) 9553701 9556027 1858775 1856412 CM091762.1 scf7180002754992 99.1 True fake: scaffold gap size wrong estimation (local) 9535173 9553613 1876926 1858866 CM091762.1 scf7180002754992 96.96 True fake: scaffold gap size wrong estimation (local) 9523589 9535138 1891831 1880258 CM091762.1 scf7180002754992 98.86 True relocation, scaffold gap is present, inconsistency = -11037 9504764 9523588 1921663 1902869 CM091762.1 scf7180002754992 99.5 True relocation, scaffold gap is present, inconsistency = -14324 9476665 9504767 1964080 1935984 CM091762.1 scf7180002754992 99.43 True fake: scaffold gap size wrong estimation (local) 9466869 9476295 1974490 1965064 CM091762.1 scf7180002754992 99.86 True fake: scaffold gap size wrong estimation (local) 9401589 9466866 2042139 1977202 CM091762.1 scf7180002754992 98.66 True fake: scaffold gap size wrong estimation (local) 9347635 9401568 2098535 2044448 CM091762.1 scf7180002754992 99.16 True fake: scaffold gap size wrong estimation (local) 9335751 9347539 2110412 2098619 CM091762.1 scf7180002754992 99.51 True indel: indel (> 5bp) 9318539 9335616 2127696 2110605 CM091762.1 scf7180002754992 99.42 True indel: indel (> 5bp) 9226322 9318421 2219890 2127859 CM091762.1 scf7180002754992 99.27 True indel: indel (<= 5bp) 9197277 9226321 2248948 2219892 CM091762.1 scf7180002754992 99.44 True CONTIG scf7180002754992 2248948 misassembled 8539665 8721681 181979 1 CM091754.1 scf7180002754993 99.57 True relocation, scaffold gap is present, inconsistency = -10838 8387936 8539654 359580 192828 CM091754.1 scf7180002754993 98.21 True fake: scaffold gap size wrong estimation (local) 8368917 8387909 385125 366467 CM091754.1 scf7180002754993 97.78 True fake: scaffold gap size wrong estimation (local) 8319969 8368876 440747 391783 CM091754.1 scf7180002754993 99.45 True fake: scaffold gap size wrong estimation (local) 8309093 8319946 453702 442839 CM091754.1 scf7180002754993 99.6 True relocation, scaffold gap is present, inconsistency = -10902 8288908 8309080 484766 464617 CM091754.1 scf7180002754993 98.81 True fake: scaffold gap size wrong estimation (local) 8286223 8288932 488927 486217 CM091754.1 scf7180002754993 99.41 True indel: indel (> 5bp) 8285549 8286053 489620 489114 CM091754.1 scf7180002754993 98.82 True indel: indel (<= 5bp) 8267960 8285390 507099 489784 CM091754.1 scf7180002754993 98.75 True fake: scaffold gap size wrong estimation (extensive) 8244497 8267961 539112 515623 CM091754.1 scf7180002754993 99.38 True fake: scaffold gap size wrong estimation (local) 8203398 8244256 584151 543890 CM091754.1 scf7180002754993 97.58 True fake: scaffold gap size wrong estimation (local) 8192376 8203376 596638 585650 CM091754.1 scf7180002754993 99.6 True fake: scaffold gap size wrong estimation (local) 8175504 8192380 614162 597253 CM091754.1 scf7180002754993 99.73 True fake: scaffold gap size wrong estimation (local) 8174496 8175202 615313 614609 CM091754.1 scf7180002754993 98.59 True indel: indel (> 5bp) 8123382 8174315 666512 615511 CM091754.1 scf7180002754993 99.62 True indel: indel (> 5bp) 8094843 8123356 695237 666544 CM091754.1 scf7180002754993 99.07 True relocation, scaffold gap is present, inconsistency = -15018 8036551 8094743 768592 710355 CM091754.1 scf7180002754993 99.65 True relocation, scaffold gap is present, inconsistency = -14288 8033973 8036198 785457 783233 CM091754.1 scf7180002754993 99.82 True fake: scaffold gap size wrong estimation (local) 7999941 8033635 820877 787193 CM091754.1 scf7180002754993 99.51 True relocation, scaffold gap is present, inconsistency = -31297 7969056 7999929 883066 852186 CM091754.1 scf7180002754993 99.41 True indel: indel (<= 5bp) 7919542 7969024 932621 883097 CM091754.1 scf7180002754993 99.24 True relocation, scaffold gap is present, inconsistency = -58464 7894447 7919522 1016254 991105 CM091754.1 scf7180002754993 99.2 True local misassembly 7870251 7893340 1039409 1016279 CM091754.1 scf7180002754993 98.66 True fake: scaffold gap size wrong estimation (local) 7816095 7869336 1093982 1040623 CM091754.1 scf7180002754993 99.18 True fake: scaffold gap size wrong estimation (local) 7770684 7815566 1139372 1094469 CM091754.1 scf7180002754993 99.57 True fake: scaffold gap size wrong estimation (local) 7689755 7770692 1224570 1143618 CM091754.1 scf7180002754993 99.9 True fake: scaffold gap size wrong estimation (local) 7688787 7689312 1225586 1225061 CM091754.1 scf7180002754993 100.0 True fake: scaffold gap size wrong estimation (local) 7665752 7688749 1248679 1225681 CM091754.1 scf7180002754993 99.92 True relocation, scaffold gap is present, inconsistency = -19493 7646440 7665742 1287002 1268182 CM091754.1 scf7180002754993 96.52 True fake: scaffold gap size wrong estimation (local) 7643670 7644206 1291791 1291255 CM091754.1 scf7180002754993 99.81 True fake: scaffold gap size wrong estimation (local) 7641913 7643669 1293571 1291815 CM091754.1 scf7180002754993 98.41 True local misassembly 7636537 7641043 1298078 1293572 CM091754.1 scf7180002754993 99.89 True fake: scaffold gap size wrong estimation (local) 7624223 7636575 1311225 1299143 CM091754.1 scf7180002754993 96.24 True fake: scaffold gap size wrong estimation (local) 7613790 7624221 1326703 1316254 CM091754.1 scf7180002754993 99.54 True fake: scaffold gap size wrong estimation (local) 7601522 7612116 1338158 1327581 CM091754.1 scf7180002754993 99.38 True fake: scaffold gap size wrong estimation (local) 7599703 7601516 1340602 1338791 CM091754.1 scf7180002754993 99.44 True local misassembly 7586031 7599295 1354667 1341365 CM091754.1 scf7180002754993 99.28 True fake: scaffold gap size wrong estimation (local) 7573536 7585880 1367158 1354819 CM091754.1 scf7180002754993 99.35 True relocation, scaffold gap is present, inconsistency = -10223 7521480 7573521 1429340 1377396 CM091754.1 scf7180002754993 99.63 True relocation, scaffold gap is present, inconsistency = -48504 7516719 7521115 1482618 1478209 CM091754.1 scf7180002754993 99.03 True fake: scaffold gap size wrong estimation (local) 7442556 7516597 1556519 1482740 CM091754.1 scf7180002754993 99.05 True fake: scaffold gap size wrong estimation (local) 7414873 7442517 1586841 1559861 CM091754.1 scf7180002754993 96.29 True fake: scaffold gap size wrong estimation (local) 7396544 7414855 1609159 1590841 CM091754.1 scf7180002754993 98.99 True fake: scaffold gap size wrong estimation (local) 7387608 7396458 1618154 1609280 CM091754.1 scf7180002754993 99.37 True local misassembly 7384894 7386287 1620898 1619505 CM091754.1 scf7180002754993 99.43 True indel: indel (<= 5bp) 7382255 7384633 1623536 1621158 CM091754.1 scf7180002754993 99.79 True local misassembly 7348448 7381734 1656759 1623537 CM091754.1 scf7180002754993 99.01 True indel: indel (> 5bp) 7301607 7348417 1703669 1656816 CM091754.1 scf7180002754993 99.28 True fake: scaffold gap size wrong estimation (local) 7282561 7301120 1722474 1703902 CM091754.1 scf7180002754993 99.53 True relocation, scaffold gap is present, inconsistency = -18487 7257578 7282504 1765973 1741018 CM091754.1 scf7180002754993 99.02 True fake: scaffold gap size wrong estimation (local) 7237613 7256751 1785829 1766737 CM091754.1 scf7180002754993 99.03 True fake: scaffold gap size wrong estimation (local) 7229390 7236255 1796931 1790030 CM091754.1 scf7180002754993 99.17 True fake: scaffold gap size wrong estimation (local) 7214428 7229419 1812522 1797466 CM091754.1 scf7180002754993 98.92 True fake: scaffold gap size wrong estimation (local) 7190290 7213752 1836456 1813007 CM091754.1 scf7180002754993 99.37 True translocation, scaffold gap is present 1870992 1880186 1856472 1847269 CM091751.1 scf7180002754993 98.51 True translocation, scaffold gap is present 7176830 7190301 1874659 1861179 CM091754.1 scf7180002754993 99.16 True indel: indel (> 5bp) 7175705 7176777 1875776 1874704 CM091754.1 scf7180002754993 99.44 True translocation, scaffold gap is present 1867145 1870787 1882376 1878731 CM091751.1 scf7180002754993 99.23 True fake: scaffold gap size wrong estimation (local) 1862745 1867145 1890305 1885901 CM091751.1 scf7180002754993 98.93 True translocation, scaffold gap is present 7161973 7175491 1890326 1903839 CM091754.1 scf7180002754993 98.66 True translocation, scaffold gap is present 1860190 1862729 1910374 1907836 CM091751.1 scf7180002754993 99.53 True indel: indel (<= 5bp) 1858640 1860093 1911927 1910472 CM091751.1 scf7180002754993 98.83 True fake: scaffold gap size wrong estimation (local) 1850032 1858043 1921833 1913809 CM091751.1 scf7180002754993 98.57 True CONTIG scf7180002754993 1925873 misassembled 7669767 7672753 1 2987 CM091760.1 scf7180002754994 99.97 True fake: scaffold gap size wrong estimation (local) 7672754 7675673 3002 5921 CM091760.1 scf7180002754994 99.73 True indel: indel (<= 5bp) 7675674 7678045 5923 8294 CM091760.1 scf7180002754994 99.87 True indel: indel (<= 5bp) 7678047 7680888 8295 11136 CM091760.1 scf7180002754994 99.93 True indel: indel (<= 5bp) 7680890 7690680 11137 20927 CM091760.1 scf7180002754994 99.98 True indel: indel (<= 5bp) 7690682 7692793 20928 23039 CM091760.1 scf7180002754994 99.91 True indel: indel (<= 5bp) 7692794 7694468 23041 24715 CM091760.1 scf7180002754994 99.82 True indel: indel (> 5bp) 7694475 7695438 24716 25679 CM091760.1 scf7180002754994 100.0 True indel: indel (<= 5bp) 7695439 7702324 25681 32566 CM091760.1 scf7180002754994 99.87 True indel: indel (<= 5bp) 7702325 7712607 32568 42850 CM091760.1 scf7180002754994 99.93 True indel: indel (<= 5bp) 7712608 7713854 42853 44099 CM091760.1 scf7180002754994 100.0 True local misassembly 7720275 7721883 44473 46081 CM091760.1 scf7180002754994 99.88 True indel: indel (<= 5bp) 7721884 7722793 46083 46992 CM091760.1 scf7180002754994 99.78 True indel: indel (> 5bp) 7722838 7723962 47002 48126 CM091760.1 scf7180002754994 98.13 True indel: indel (<= 5bp) 7723963 7725077 48128 49242 CM091760.1 scf7180002754994 99.91 True fake: scaffold gap size wrong estimation (local) 7725078 7729009 49263 53194 CM091760.1 scf7180002754994 99.75 True indel: indel (<= 5bp) 7729011 7730344 53195 54528 CM091760.1 scf7180002754994 99.63 True indel: indel (<= 5bp) 7730786 7731545 54972 55731 CM091760.1 scf7180002754994 99.87 True indel: indel (> 5bp) 7731732 7773374 55946 97581 CM091760.1 scf7180002754994 99.58 True relocation, scaffold gap is present, inconsistency = -36243 7773710 7843859 134160 204379 CM091760.1 scf7180002754994 99.43 True indel: indel (> 5bp) 7843906 7858868 204479 219441 CM091760.1 scf7180002754994 99.7 True relocation, scaffold gap is present, inconsistency = -74341 7858943 7890946 293857 325861 CM091760.1 scf7180002754994 99.46 True local misassembly 7893374 7893876 326652 327154 CM091760.1 scf7180002754994 99.6 True fake: scaffold gap size wrong estimation (local) 7894253 7930553 327534 363852 CM091760.1 scf7180002754994 99.53 True fake: scaffold gap size wrong estimation (local) 7930470 7965586 364938 400030 CM091760.1 scf7180002754994 99.51 True relocation, scaffold gap is present, inconsistency = -15671 7965567 8057497 415682 507614 CM091760.1 scf7180002754994 99.51 True fake: scaffold gap size wrong estimation (local) 8057575 8110637 514528 567564 CM091760.1 scf7180002754994 99.25 True relocation, scaffold gap is present, inconsistency = -17503 8110605 8216212 585035 690632 CM091760.1 scf7180002754994 99.35 True indel: indel (<= 5bp) 8216218 8270448 690640 744956 CM091760.1 scf7180002754994 99.37 True translocation, scaffold gap is present 5570453 5577525 744977 752049 CM091764.1 scf7180002754994 99.7 True translocation, scaffold gap is present 8270353 8278421 752070 760135 CM091760.1 scf7180002754994 99.65 True translocation, scaffold gap is present 5578313 5580068 760344 762099 CM091764.1 scf7180002754994 99.83 True indel: indel (<= 5bp) 5580172 5581969 762205 764002 CM091764.1 scf7180002754994 99.61 True indel: indel (<= 5bp) 5581970 5583381 764004 765415 CM091764.1 scf7180002754994 99.72 True indel: indel (> 5bp) 5583421 5583946 765445 765970 CM091764.1 scf7180002754994 98.86 True local misassembly 5585243 5586527 767272 768556 CM091764.1 scf7180002754994 99.61 True fake: scaffold gap size wrong estimation (extensive) 5587160 5588771 777340 778951 CM091764.1 scf7180002754994 99.44 True indel: indel (<= 5bp) 5588772 5591057 778953 781238 CM091764.1 scf7180002754994 99.83 True indel: indel (<= 5bp) 5591117 5592287 781299 782469 CM091764.1 scf7180002754994 99.74 True indel: indel (<= 5bp) 5592363 5592891 782547 783075 CM091764.1 scf7180002754994 99.81 True local misassembly 5593414 5594513 783597 784696 CM091764.1 scf7180002754994 99.82 True fake: scaffold gap size wrong estimation (local) 5594905 5599584 791780 796459 CM091764.1 scf7180002754994 99.47 True indel: indel (<= 5bp) 5599585 5600094 796461 796970 CM091764.1 scf7180002754994 99.61 True indel: indel (> 5bp) 5600299 5601855 797182 798738 CM091764.1 scf7180002754994 98.84 True local misassembly 5602743 5603693 799616 800566 CM091764.1 scf7180002754994 99.68 True indel: stretch of mismatches 5603934 5604956 800807 801829 CM091764.1 scf7180002754994 99.71 True indel: indel (> 5bp) 5605000 5605790 801894 802684 CM091764.1 scf7180002754994 100.0 True indel: indel (<= 5bp) 5605791 5606355 802686 803250 CM091764.1 scf7180002754994 99.65 True indel: indel (<= 5bp) 5606356 5607017 803252 803913 CM091764.1 scf7180002754994 99.7 True indel: indel (<= 5bp) 5607068 5608675 803963 805570 CM091764.1 scf7180002754994 99.69 True indel: indel (<= 5bp) 5608677 5609535 805571 806429 CM091764.1 scf7180002754994 99.42 True translocation, scaffold gap is present 6361735 6362970 808407 807172 CM091760.1 scf7180002754994 99.76 True fake: scaffold gap size wrong estimation (local) 6359387 6361248 811093 809231 CM091760.1 scf7180002754994 99.73 True fake: not a misassembly (possible transposable element) 8292880 8296909 811114 815144 CM091760.1 scf7180002754994 99.68 True fake: not a misassembly (possible transposable element) 6341724 6358902 833058 815896 CM091760.1 scf7180002754994 99.56 True relocation, scaffold gap is present, inconsistency = 1938029 8296952 8301561 833079 837761 CM091760.1 scf7180002754994 98.6 True fake: scaffold gap size wrong estimation (local) 8302225 8309245 838155 845164 CM091760.1 scf7180002754994 99.22 True fake: not a misassembly (possible transposable element) 5610259 5615733 845185 850665 CM091764.1 scf7180002754994 99.36 True fake: not a misassembly (possible transposable element) 8309327 8312561 850686 853923 CM091760.1 scf7180002754994 99.78 True translocation, scaffold gap is present 5615621 5634282 853944 872759 CM091764.1 scf7180002754994 98.77 True translocation, scaffold gap is present 6315501 6341817 899102 872780 CM091760.1 scf7180002754994 99.42 True relocation, scaffold gap is present, inconsistency = 1970929 8312767 8337158 899123 923532 CM091760.1 scf7180002754994 99.44 True translocation, scaffold gap is present 5634265 5651483 923553 940810 CM091764.1 scf7180002754994 99.36 True translocation, scaffold gap is present 8338191 8348048 940831 950680 CM091760.1 scf7180002754994 99.78 True relocation, scaffold gap is present, inconsistency = 2022635 6305142 6315535 961102 950701 CM091760.1 scf7180002754994 99.36 True relocation, scaffold gap is present, inconsistency = 2032383 8347965 8413186 961149 1026365 CM091760.1 scf7180002754994 99.63 True relocation, scaffold gap is present, inconsistency = 2042795 6250173 6305146 1081852 1026389 CM091760.1 scf7180002754994 98.74 True relocation, scaffold gap is present, inconsistency = 2099448 8413068 8426838 1090326 1104236 CM091760.1 scf7180002754994 98.86 True translocation, scaffold gap is present 9548693 9566317 1121886 1104257 CM091765.1 scf7180002754994 99.86 True translocation, scaffold gap is present 8426715 8427220 1121931 1122436 CM091760.1 scf7180002754994 100.0 True indel: indel (<= 5bp) 8427221 8428082 1122438 1123299 CM091760.1 scf7180002754994 99.3 True fake: scaffold gap size wrong estimation (local) 8428355 8429137 1123712 1124494 CM091760.1 scf7180002754994 99.49 True fake: scaffold gap size wrong estimation (local) 8432365 8434619 1124877 1127123 CM091760.1 scf7180002754994 97.92 True fake: scaffold gap size wrong estimation (local) 8435200 8485547 1127847 1177695 CM091760.1 scf7180002754994 98.45 True translocation, scaffold gap is present 9533170 9548188 1192875 1177716 CM091765.1 scf7180002754994 98.77 True fake: not a misassembly (possible transposable element) 2915723 2919233 1196386 1192876 CM091759.1 scf7180002754994 99.68 True fake: not a misassembly (possible transposable element) 9527980 9533258 1201685 1196407 CM091765.1 scf7180002754994 99.73 True translocation, scaffold gap is present 2885485 2915404 1231613 1201706 CM091759.1 scf7180002754994 99.91 True translocation, scaffold gap is present 9527491 9528017 1232160 1231634 CM091765.1 scf7180002754994 100.0 True local misassembly 9525230 9526520 1234406 1233116 CM091765.1 scf7180002754994 100.0 True indel: indel (<= 5bp) 9522858 9525229 1236779 1234408 CM091765.1 scf7180002754994 99.87 True local misassembly 9521343 9522195 1238198 1237346 CM091765.1 scf7180002754994 99.53 True indel: indel (<= 5bp) 9519682 9521086 1239860 1238456 CM091765.1 scf7180002754994 99.86 True indel: indel (> 5bp) 9517641 9519668 1241923 1239896 CM091765.1 scf7180002754994 99.95 True indel: indel (<= 5bp) 9515961 9517639 1243602 1241924 CM091765.1 scf7180002754994 99.88 True indel: indel (<= 5bp) 9513981 9515959 1245581 1243603 CM091765.1 scf7180002754994 99.55 True fake: scaffold gap size wrong estimation (local) 9513410 9513980 1246166 1245596 CM091765.1 scf7180002754994 99.82 True relocation, scaffold gap is present, inconsistency = -14603 9511973 9513409 1262206 1260770 CM091765.1 scf7180002754994 99.93 True indel: stretch of mismatches 9506473 9511639 1267706 1262540 CM091765.1 scf7180002754994 99.26 True indel: indel (<= 5bp) 9503387 9506472 1270796 1267711 CM091765.1 scf7180002754994 99.87 True translocation, scaffold gap is present 8496447 8572494 1270842 1346877 CM091760.1 scf7180002754994 99.2 True translocation, scaffold gap is present 2863286 2885498 1369108 1346898 CM091759.1 scf7180002754994 99.76 True translocation 9498874 9503309 1373538 1369109 CM091765.1 scf7180002754994 99.09 True fake: scaffold gap size wrong estimation (local) 9495746 9496799 1376090 1375037 CM091765.1 scf7180002754994 98.96 True translocation, scaffold gap is present 2826877 2863162 1428595 1390845 CM091759.1 scf7180002754994 97.08 True indel: stretch of mismatches 2816824 2826876 1438648 1428596 CM091759.1 scf7180002754994 99.99 True relocation, scaffold gap is present, inconsistency = -10089 2791678 2816571 1473567 1448990 CM091759.1 scf7180002754994 98.72 True fake: scaffold gap size wrong estimation (local) 2734309 2791537 1530903 1473708 CM091759.1 scf7180002754994 99.78 True fake: scaffold gap size wrong estimation (local) 2649354 2733801 1615653 1531380 CM091759.1 scf7180002754994 99.38 True indel: indel (<= 5bp) 2641130 2649255 1623841 1615747 CM091759.1 scf7180002754994 99.43 True relocation, scaffold gap is present, inconsistency = -57044 2519726 2641138 1807265 1680877 CM091759.1 scf7180002754994 99.38 True relocation, scaffold gap is present, inconsistency = -14578 2422384 2519625 1918671 1821944 CM091759.1 scf7180002754994 99.05 True fake: scaffold gap size wrong estimation (local) 2381600 2422374 1963251 1922479 CM091759.1 scf7180002754994 99.71 True fake: scaffold gap size wrong estimation (local) 2380013 2381298 1964838 1963553 CM091759.1 scf7180002754994 99.14 True indel: indel (<= 5bp) 2376600 2380011 1968250 1964839 CM091759.1 scf7180002754994 99.74 True indel: indel (<= 5bp) 2372387 2376598 1972462 1968251 CM091759.1 scf7180002754994 99.91 True indel: indel (<= 5bp) 2371110 2372386 1973740 1972464 CM091759.1 scf7180002754994 99.92 True indel: indel (<= 5bp) 2366022 2371109 1978829 1973742 CM091759.1 scf7180002754994 99.72 True fake: scaffold gap size wrong estimation (local) 2361998 2363807 1981133 1979324 CM091759.1 scf7180002754994 99.94 True indel: indel (> 5bp) 2357400 2361991 1985725 1981134 CM091759.1 scf7180002754994 99.83 True indel: indel (<= 5bp) 2356140 2356899 1986983 1986224 CM091759.1 scf7180002754994 100.0 True indel: indel (<= 5bp) 2350612 2356139 1992512 1986985 CM091759.1 scf7180002754994 99.95 True indel: indel (<= 5bp) 2347227 2350608 1995894 1992513 CM091759.1 scf7180002754994 99.91 True relocation, scaffold gap is present, inconsistency = -16370 2264170 2347152 2095111 2012339 CM091759.1 scf7180002754994 99.35 True relocation, scaffold gap is present, inconsistency = -22718 2197152 2264155 2184819 2117844 CM091759.1 scf7180002754994 99.59 True fake: scaffold gap size wrong estimation (local) 2133500 2196826 2248901 2185513 CM091759.1 scf7180002754994 99.67 True CONTIG scf7180002754994 2248901 misassembled 736877 741919 1 5035 CM091752.1 scf7180002754995 98.56 True fake: scaffold gap size wrong estimation (local) 743358 744476 5947 7064 CM091752.1 scf7180002754995 99.64 True fake: scaffold gap size wrong estimation (local) 745009 748289 7085 10361 CM091752.1 scf7180002754995 99.06 True local misassembly 749860 751453 10362 11955 CM091752.1 scf7180002754995 99.39 True local misassembly 752145 753642 11956 13454 CM091752.1 scf7180002754995 99.55 True fake: scaffold gap size wrong estimation (local) 753646 779676 19754 45351 CM091752.1 scf7180002754995 96.31 True fake: scaffold gap size wrong estimation (local) 780579 781865 51521 52807 CM091752.1 scf7180002754995 99.53 True local misassembly 782758 784885 53700 55827 CM091752.1 scf7180002754995 99.53 True indel: indel (> 5bp) 784898 785549 55828 56479 CM091752.1 scf7180002754995 99.54 True indel: indel (<= 5bp) 785551 786281 56480 57210 CM091752.1 scf7180002754995 98.63 True indel: indel (<= 5bp) 786547 787046 57478 57977 CM091752.1 scf7180002754995 99.2 True indel: indel (<= 5bp) 787048 788679 57978 59609 CM091752.1 scf7180002754995 99.69 True indel: indel (<= 5bp) 788680 789426 59611 60357 CM091752.1 scf7180002754995 99.6 True local misassembly 790340 791123 60834 61617 CM091752.1 scf7180002754995 99.23 True indel: indel (<= 5bp) 791125 791770 61618 62263 CM091752.1 scf7180002754995 97.68 True local misassembly 794132 795425 62713 64006 CM091752.1 scf7180002754995 99.54 True indel: indel (<= 5bp) 795431 796340 64007 64916 CM091752.1 scf7180002754995 99.34 True indel: indel (<= 5bp) 796341 797549 64918 66126 CM091752.1 scf7180002754995 99.67 True indel: indel (<= 5bp) 797550 798668 66128 67246 CM091752.1 scf7180002754995 99.82 True indel: indel (<= 5bp) 798822 799397 67399 67974 CM091752.1 scf7180002754995 99.83 True indel: indel (<= 5bp) 799583 800877 68162 69456 CM091752.1 scf7180002754995 99.92 True indel: stretch of mismatches 800993 804807 69572 73386 CM091752.1 scf7180002754995 99.79 True indel: indel (<= 5bp) 804811 805351 73387 73927 CM091752.1 scf7180002754995 99.82 True indel: indel (> 5bp) 805352 806288 73934 74870 CM091752.1 scf7180002754995 98.83 True indel: indel (<= 5bp) 806289 810952 74872 79535 CM091752.1 scf7180002754995 99.83 True relocation, scaffold gap is present, inconsistency = -27654 811176 835085 107413 131102 CM091752.1 scf7180002754995 98.05 True relocation, scaffold gap is present, inconsistency = -23705 835056 837022 154778 156740 CM091752.1 scf7180002754995 98.03 True local misassembly 838271 839055 156884 157668 CM091752.1 scf7180002754995 99.24 True indel: indel (> 5bp) 839128 839661 157776 158309 CM091752.1 scf7180002754995 99.44 True local misassembly 840418 841107 159049 159738 CM091752.1 scf7180002754995 99.57 True fake: scaffold gap size wrong estimation (local) 841427 842425 159886 160884 CM091752.1 scf7180002754995 99.7 True local misassembly 843010 843579 161463 162032 CM091752.1 scf7180002754995 98.42 True fake: scaffold gap size wrong estimation (local) 844595 846717 162429 164533 CM091752.1 scf7180002754995 98.49 True fake: scaffold gap size wrong estimation (local) 848086 851898 168146 171958 CM091752.1 scf7180002754995 98.6 True local misassembly 852463 865941 171959 185139 CM091752.1 scf7180002754995 96.83 True fake: scaffold gap size wrong estimation (extensive) 866765 867373 194403 195011 CM091752.1 scf7180002754995 99.84 True indel: stretch of mismatches 867413 870613 195051 198251 CM091752.1 scf7180002754995 99.66 True indel: indel (<= 5bp) 870615 871160 198252 198797 CM091752.1 scf7180002754995 99.63 True indel: indel (<= 5bp) 871163 871873 198798 199508 CM091752.1 scf7180002754995 99.86 True indel: indel (<= 5bp) 871875 873113 199509 200747 CM091752.1 scf7180002754995 99.44 True indel: indel (<= 5bp) 873115 875034 200748 202667 CM091752.1 scf7180002754995 99.06 True fake: scaffold gap size wrong estimation (local) 876141 879545 203589 206993 CM091752.1 scf7180002754995 99.47 True indel: stretch of mismatches 879711 880398 207159 207846 CM091752.1 scf7180002754995 99.56 True indel: indel (<= 5bp) 880399 881148 207848 208597 CM091752.1 scf7180002754995 99.33 True indel: indel (<= 5bp) 881219 882303 208670 209754 CM091752.1 scf7180002754995 99.26 True local misassembly 885068 886788 211476 213196 CM091752.1 scf7180002754995 99.54 True indel: indel (<= 5bp) 886793 887298 213197 213702 CM091752.1 scf7180002754995 99.6 True relocation, scaffold gap is present, inconsistency = -10131 887315 913066 223850 249609 CM091752.1 scf7180002754995 98.95 True fake: scaffold gap size wrong estimation (local) 913095 918352 251667 256950 CM091752.1 scf7180002754995 99.08 True translocation 7474341 7500459 283073 256951 CM091762.1 scf7180002754995 99.81 True fake: scaffold gap size wrong estimation (local) 7472770 7473899 284333 283173 CM091762.1 scf7180002754995 98.86 True indel: indel (> 5bp) 7468842 7472727 288253 284361 CM091762.1 scf7180002754995 99.54 True fake: scaffold gap size wrong estimation (local) 7466164 7468486 290714 288392 CM091762.1 scf7180002754995 99.61 True fake: scaffold gap size wrong estimation (local) 7423570 7465957 333318 290909 CM091762.1 scf7180002754995 99.86 True local misassembly 7384561 7422990 372539 334106 CM091762.1 scf7180002754995 99.92 True local misassembly 7347366 7383227 409656 373888 CM091762.1 scf7180002754995 99.64 True relocation, scaffold gap is present, inconsistency = -118059 7399468 7399981 475613 475100 CM091762.1 scf7180002754995 100.0 True fake: scaffold gap size wrong estimation (local) 7391464 7392230 483665 482850 CM091762.1 scf7180002754995 98.09 True fake: scaffold gap size wrong estimation (local) 7368087 7368674 507086 506460 CM091762.1 scf7180002754995 96.58 True fake: scaffold gap size wrong estimation (local) 7319725 7347145 554887 527498 CM091762.1 scf7180002754995 99.38 True fake: scaffold gap size wrong estimation (extensive) 7235778 7319727 646598 563247 CM091762.1 scf7180002754995 98.69 True fake: scaffold gap size wrong estimation (local) 7225801 7235646 657646 647768 CM091762.1 scf7180002754995 99.11 True fake: scaffold gap size wrong estimation (local) 7224678 7225519 663110 662269 CM091762.1 scf7180002754995 99.17 True fake: scaffold gap size wrong estimation (local) 7223722 7224375 663867 663214 CM091762.1 scf7180002754995 99.54 True indel: indel (<= 5bp) 7223062 7223682 664525 663905 CM091762.1 scf7180002754995 99.52 True fake: scaffold gap size wrong estimation (local) 7220315 7221331 667289 666273 CM091762.1 scf7180002754995 99.8 True indel: indel (> 5bp) 7219315 7219925 668301 667691 CM091762.1 scf7180002754995 99.51 True indel: indel (<= 5bp) 7218762 7219314 668855 668303 CM091762.1 scf7180002754995 99.28 True local misassembly 7217042 7218008 670577 669611 CM091762.1 scf7180002754995 99.48 True indel: indel (<= 5bp) 7216157 7217041 671463 670579 CM091762.1 scf7180002754995 100.0 True fake: scaffold gap size wrong estimation (local) 7208543 7209791 673295 672047 CM091762.1 scf7180002754995 99.76 True fake: scaffold gap size wrong estimation (local) 7207016 7207919 674833 673930 CM091762.1 scf7180002754995 99.89 True indel: indel (<= 5bp) 7205055 7207015 676795 674835 CM091762.1 scf7180002754995 99.9 True indel: stretch of mismatches 7204056 7204822 677794 677028 CM091762.1 scf7180002754995 99.87 True relocation, scaffold gap is present, inconsistency = -12532 7215060 7216011 679322 678371 CM091762.1 scf7180002754995 99.89 True indel: indel (<= 5bp) 7213436 7214702 680948 679682 CM091762.1 scf7180002754995 98.82 True indel: indel (<= 5bp) 7211898 7213435 682487 680950 CM091762.1 scf7180002754995 99.74 True fake: scaffold gap size wrong estimation (local) 7201934 7203631 687406 685709 CM091762.1 scf7180002754995 99.76 True indel: indel (<= 5bp) 7198645 7201933 690696 687408 CM091762.1 scf7180002754995 99.51 True fake: scaffold gap size wrong estimation (local) 7182328 7198526 710905 694704 CM091762.1 scf7180002754995 99.29 True indel: indel (> 5bp) 7076603 7182264 816731 710953 CM091762.1 scf7180002754995 98.61 True indel: indel (> 5bp) 7059116 7076393 834237 816957 CM091762.1 scf7180002754995 99.65 True local misassembly 7016660 7055423 873049 834238 CM091762.1 scf7180002754995 99.28 True indel: indel (<= 5bp) 7015668 7016589 874043 873122 CM091762.1 scf7180002754995 99.89 True fake: scaffold gap size wrong estimation (local) 6982805 7015311 906913 874423 CM091762.1 scf7180002754995 99.5 True relocation, scaffold gap is present, inconsistency = -11555 6917853 6982490 983593 918783 CM091762.1 scf7180002754995 99.2 True fake: scaffold gap size wrong estimation (local) 6911329 6917577 990172 983902 CM091762.1 scf7180002754995 99.2 True fake: scaffold gap size wrong estimation (local) 6883575 6911012 1018014 990566 CM091762.1 scf7180002754995 99.1 True relocation, scaffold gap is present, inconsistency = -19279 6843331 6883281 1077522 1037587 CM091762.1 scf7180002754995 99.35 True relocation, scaffold gap is present, inconsistency = -28609 6861383 6861979 1088080 1087483 CM091762.1 scf7180002754995 99.56 True fake: scaffold gap size wrong estimation (local) 6800754 6843329 1148034 1106129 CM091762.1 scf7180002754995 97.79 True fake: scaffold gap size wrong estimation (local) 6639283 6800730 1315685 1154306 CM091762.1 scf7180002754995 99.56 True relocation, scaffold gap is present, inconsistency = -25323 6633149 6639506 1347145 1340785 CM091762.1 scf7180002754995 99.31 True fake: scaffold gap size wrong estimation (local) 6609894 6631942 1373974 1351910 CM091762.1 scf7180002754995 99.52 True relocation, scaffold gap is present, inconsistency = -11719 6566218 6609880 1429417 1385707 CM091762.1 scf7180002754995 99.63 True relocation, scaffold gap is present, inconsistency = -36012 6515187 6566243 1516459 1465404 CM091762.1 scf7180002754995 99.43 True relocation, scaffold gap is present, inconsistency = -44606 6504857 6515202 1571519 1561050 CM091762.1 scf7180002754995 98.64 True fake: scaffold gap size wrong estimation (local) 6479809 6504665 1596414 1571540 CM091762.1 scf7180002754995 99.49 True relocation, scaffold gap is present, inconsistency = -24364 6374486 6479758 1726102 1620829 CM091762.1 scf7180002754995 99.67 True relocation, scaffold gap is present, inconsistency = -89928 6348162 6374486 1842376 1816030 CM091762.1 scf7180002754995 99.72 True fake: scaffold gap size wrong estimation (local) 6346112 6346851 1844431 1843692 CM091762.1 scf7180002754995 98.65 True local misassembly 6344753 6345366 1845764 1845151 CM091762.1 scf7180002754995 98.86 True fake: scaffold gap size wrong estimation (local) 6343614 6344198 1846512 1845928 CM091762.1 scf7180002754995 98.46 True local misassembly 6342007 6342862 1848138 1847283 CM091762.1 scf7180002754995 99.53 True fake: scaffold gap size wrong estimation (local) 6322995 6341919 1866781 1848227 CM091762.1 scf7180002754995 97.03 True relocation, scaffold gap is present, inconsistency = -8893 6325452 6326088 1873217 1872581 CM091762.1 scf7180002754995 99.2 True fake: scaffold gap size wrong estimation (local) 6252495 6322200 1945305 1876069 CM091762.1 scf7180002754995 98.66 True indel: stretch of mismatches 6241117 6252494 1956702 1945306 CM091762.1 scf7180002754995 99.59 True relocation, scaffold gap is present, inconsistency = -10812 6210587 6240404 1997869 1968227 CM091762.1 scf7180002754995 98.62 True relocation, inconsistency = 2221744 3979572 3988842 2007200 1997870 CM091762.1 scf7180002754995 97.7 True fake: scaffold gap size wrong estimation (local) 3940113 3970923 2046717 2015982 CM091762.1 scf7180002754995 98.83 True relocation, scaffold gap is present, inconsistency = -28339 3945137 3945638 2070033 2069531 CM091762.1 scf7180002754995 97.22 True fake: scaffold gap size wrong estimation (local) 3924482 3940126 2089687 2074057 CM091762.1 scf7180002754995 99.18 True fake: scaffold gap size wrong estimation (local) 3916973 3924298 2097110 2089771 CM091762.1 scf7180002754995 99.33 True fake: scaffold gap size wrong estimation (local) 3898419 3916955 2122242 2103869 CM091762.1 scf7180002754995 98.06 True fake: scaffold gap size wrong estimation (local) 3895433 3898237 2125237 2122424 CM091762.1 scf7180002754995 99.33 True indel: indel (<= 5bp) 3866085 3895367 2154273 2125307 CM091762.1 scf7180002754995 97.74 True fake: not a misassembly (possible transposable element) 6801249 6803434 2154274 2156437 CM091767.1 scf7180002754995 97.86 True fake: not a misassembly (possible transposable element) 3858663 3866180 2163968 2156458 CM091762.1 scf7180002754995 99.49 True translocation, scaffold gap is present 6803397 6809355 2166216 2172165 CM091767.1 scf7180002754995 98.63 True translocation, scaffold gap is present 3831961 3858784 2204223 2177401 CM091762.1 scf7180002754995 99.29 True relocation, scaffold gap is present, inconsistency = -26282 3784302 3832080 2278210 2230386 CM091762.1 scf7180002754995 99.17 True relocation, scaffold gap is present, inconsistency = -36076 3798480 3798995 2300108 2299593 CM091762.1 scf7180002754995 99.55 True fake: scaffold gap size wrong estimation (local) 3669914 3784351 2428517 2314325 CM091762.1 scf7180002754995 99.25 True relocation, scaffold gap is present, inconsistency = -103002 3765330 3766018 2436127 2435415 CM091762.1 scf7180002754995 98.66 True fake: scaffold gap size wrong estimation (local) 3705754 3706533 2495903 2495124 CM091762.1 scf7180002754995 100.0 True fake: scaffold gap size wrong estimation (local) 3596806 3669847 2604803 2531784 CM091762.1 scf7180002754995 99.7 True CONTIG scf7180002754995 2604803 misassembled 12743176 12748497 5338 1 CM091754.1 scf7180002754996 99.51 True fake: scaffold gap size wrong estimation (local) 12663223 12742506 84997 5585 CM091754.1 scf7180002754996 99.1 True relocation, scaffold gap is present, inconsistency = -64204 12609956 12661985 202610 150439 CM091754.1 scf7180002754996 99.01 True relocation, scaffold gap is present, inconsistency = -51566 12541481 12609886 322617 254246 CM091754.1 scf7180002754996 99.3 True fake: scaffold gap size wrong estimation (local) 12537292 12541201 326802 322897 CM091754.1 scf7180002754996 99.56 True fake: scaffold gap size wrong estimation (local) 12508063 12537009 356183 327233 CM091754.1 scf7180002754996 99.62 True relocation, scaffold gap is present, inconsistency = -14810 12516748 12517464 362322 361592 CM091754.1 scf7180002754996 99.53 True translocation, scaffold gap is present 9353243 9355374 364881 362754 CM091752.1 scf7180002754996 98.31 True indel: stretch of mismatches 9352421 9353139 365703 364985 CM091752.1 scf7180002754996 100.0 True translocation, scaffold gap is present 12501790 12506330 371427 366907 CM091754.1 scf7180002754996 97.83 True fake: scaffold gap size wrong estimation (local) 12473902 12500915 402451 375863 CM091754.1 scf7180002754996 97.51 True relocation, scaffold gap is present, inconsistency = -24440 12470711 12473868 430075 426925 CM091754.1 scf7180002754996 99.2 True fake: scaffold gap size wrong estimation (local) 12376277 12469836 525255 431601 CM091754.1 scf7180002754996 99.22 True relocation, scaffold gap is present, inconsistency = -24480 12359296 12376061 566656 549951 CM091754.1 scf7180002754996 98.94 True translocation, scaffold gap is present 1917149 1924631 566677 574161 CM091757.1 scf7180002754996 99.19 True translocation, scaffold gap is present 12353713 12359054 584437 579104 CM091754.1 scf7180002754996 99.16 True translocation, scaffold gap is present 1924871 1930553 584475 590163 CM091757.1 scf7180002754996 99.14 True indel: indel (> 5bp) 1930718 1931667 590277 591193 CM091757.1 scf7180002754996 95.37 True translocation, scaffold gap is present 12345242 12353777 606154 597627 CM091754.1 scf7180002754996 99.26 True translocation, scaffold gap is present 1931718 1939719 606178 614179 CM091757.1 scf7180002754996 99.51 True translocation, scaffold gap is present 12341588 12345270 622275 618600 CM091754.1 scf7180002754996 99.4 True fake: not a misassembly (possible transposable element) 1940002 1943579 624629 628160 CM091757.1 scf7180002754996 98.24 True fake: not a misassembly (possible transposable element) 12335884 12341585 633890 628194 CM091754.1 scf7180002754996 99.3 True fake: not a misassembly (possible transposable element) 1943732 1945107 638638 640026 CM091757.1 scf7180002754996 98.85 True fake: not a misassembly (possible transposable element) 12333021 12335993 643010 640047 CM091754.1 scf7180002754996 99.19 True translocation, scaffold gap is present 1945071 1953138 643048 651123 CM091757.1 scf7180002754996 99.34 True translocation, scaffold gap is present 12329202 12332978 654930 651168 CM091754.1 scf7180002754996 98.89 True fake: scaffold gap size wrong estimation (local) 12326919 12328783 660916 659052 CM091754.1 scf7180002754996 99.79 True fake: scaffold gap size wrong estimation (local) 12324397 12326160 664166 662406 CM091754.1 scf7180002754996 99.04 True translocation, scaffold gap is present 1954316 1963943 664669 674244 CM091757.1 scf7180002754996 99.02 True translocation, scaffold gap is present 12322075 12324432 677608 675265 CM091754.1 scf7180002754996 98.35 True indel: indel (<= 5bp) 12307606 12322060 692110 677619 CM091754.1 scf7180002754996 99.32 True translocation, scaffold gap is present 1964545 1968059 693758 697276 CM091757.1 scf7180002754996 99.52 True fake: scaffold gap size wrong estimation (local) 1968196 1977640 700241 709689 CM091757.1 scf7180002754996 99.49 True relocation, scaffold gap is present, inconsistency = -13723 1963938 1964539 709710 710311 CM091757.1 scf7180002754996 99.17 True translocation, scaffold gap is present 12304326 12307568 713604 710361 CM091754.1 scf7180002754996 99.45 True fake: scaffold gap size wrong estimation (local) 12300789 12303709 719289 716371 CM091754.1 scf7180002754996 99.62 True fake: not a misassembly (possible transposable element) 1978103 1982583 719310 723810 CM091757.1 scf7180002754996 99.13 True fake: not a misassembly (possible transposable element) 12290071 12300404 735292 725012 CM091754.1 scf7180002754996 99.1 True translocation, scaffold gap is present 1982574 1991167 737151 745751 CM091757.1 scf7180002754996 99.21 True translocation, scaffold gap is present 12287717 12290070 755987 753634 CM091754.1 scf7180002754996 99.92 True fake: not a misassembly (possible transposable element) 1991178 1994305 756008 759140 CM091757.1 scf7180002754996 99.23 True fake: not a misassembly (possible transposable element) 12263642 12287362 782877 759161 CM091754.1 scf7180002754996 99.44 True translocation, scaffold gap is present 1994825 1996249 783989 785413 CM091757.1 scf7180002754996 99.3 True indel: indel (<= 5bp) 1996573 1997335 785738 786500 CM091757.1 scf7180002754996 99.74 True fake: scaffold gap size wrong estimation (local) 1997731 1998543 789975 790787 CM091757.1 scf7180002754996 99.75 True indel: indel (> 5bp) 1998819 1999954 791076 792211 CM091757.1 scf7180002754996 98.86 True indel: indel (<= 5bp) 2000383 2001296 792644 793557 CM091757.1 scf7180002754996 100.0 True translocation, scaffold gap is present 12260510 12263636 811617 808480 CM091754.1 scf7180002754996 99.17 True indel: indel (<= 5bp) 12249337 12260210 822772 811912 CM091754.1 scf7180002754996 99.05 True relocation, scaffold gap is present, inconsistency = -13820 12226014 12247649 864273 838280 CM091754.1 scf7180002754996 98.22 True local misassembly 12217535 12222512 869343 864377 CM091754.1 scf7180002754996 99.28 True CONTIG scf7180002754996 869352 misassembled 13906096 13919235 13129 1 CM091751.1 scf7180002754997 99.77 True fake: scaffold gap size wrong estimation (local) 13878688 13905978 40634 13325 CM091751.1 scf7180002754997 99.41 True relocation, scaffold gap is present, inconsistency = -26902 13848258 13878646 97895 67578 CM091751.1 scf7180002754997 99.21 True indel: indel (> 5bp) 13827621 13848042 118531 98050 CM091751.1 scf7180002754997 98.94 True relocation, scaffold gap is present, inconsistency = -40318 13660714 13827589 324417 158881 CM091751.1 scf7180002754997 98.33 True fake: scaffold gap size wrong estimation (local) 13659672 13660187 325217 324702 CM091751.1 scf7180002754997 99.81 True indel: indel (> 5bp) 13659162 13659671 325733 325224 CM091751.1 scf7180002754997 99.61 True local misassembly 13657257 13658201 327645 326701 CM091751.1 scf7180002754997 98.94 True indel: indel (<= 5bp) 13656004 13657101 328901 327804 CM091751.1 scf7180002754997 99.82 True fake: scaffold gap size wrong estimation (local) 13621958 13655937 366885 332815 CM091751.1 scf7180002754997 99.1 True fake: scaffold gap size wrong estimation (local) 13613997 13621584 375944 368358 CM091751.1 scf7180002754997 99.95 True fake: scaffold gap size wrong estimation (local) 13599468 13613903 394535 380080 CM091751.1 scf7180002754997 99.99 True fake: scaffold gap size wrong estimation (local) 13588338 13599157 412213 401392 CM091751.1 scf7180002754997 99.9 True fake: scaffold gap size wrong estimation (extensive) 13567359 13588335 440809 419833 CM091751.1 scf7180002754997 99.7 True indel: indel (> 5bp) 13407974 13567320 600092 440854 CM091751.1 scf7180002754997 99.5 True indel: stretch of mismatches 13362797 13407916 645384 600150 CM091751.1 scf7180002754997 99.41 True relocation, scaffold gap is present, inconsistency = -35454 13334023 13362019 709658 681616 CM091751.1 scf7180002754997 99.01 True relocation, scaffold gap is present, inconsistency = -12636 13279208 13334037 776489 722280 CM091751.1 scf7180002754997 97.96 True fake: scaffold gap size wrong estimation (local) 13275428 13278440 779856 776841 CM091751.1 scf7180002754997 99.11 True fake: scaffold gap size wrong estimation (local) 13274069 13275168 783001 781893 CM091751.1 scf7180002754997 98.02 True fake: scaffold gap size wrong estimation (local) 13266037 13273935 791093 783189 CM091751.1 scf7180002754997 99.27 True translocation, scaffold gap is present 6494637 6503125 791119 799615 CM091761.1 scf7180002754997 99.72 True translocation, scaffold gap is present 13218088 13219673 807599 805999 CM091751.1 scf7180002754997 98.06 True translocation, scaffold gap is present 6503282 6510032 807620 814380 CM091761.1 scf7180002754997 99.67 True translocation, scaffold gap is present 13258533 13263650 820577 815472 CM091751.1 scf7180002754997 98.48 True translocation, scaffold gap is present 6510139 6547877 821695 859446 CM091761.1 scf7180002754997 99.43 True fake: scaffold gap size wrong estimation (local) 6548018 6551968 859578 863529 CM091761.1 scf7180002754997 99.61 True fake: scaffold gap size wrong estimation (local) 6552773 6558469 863550 869247 CM091761.1 scf7180002754997 99.72 True fake: scaffold gap size wrong estimation (local) 6558573 6574429 874583 890213 CM091761.1 scf7180002754997 97.88 True fake: scaffold gap size wrong estimation (local) 6574542 6641854 890308 957879 CM091761.1 scf7180002754997 99.47 True fake: scaffold gap size wrong estimation (extensive) 6641882 6735193 965193 1056947 CM091761.1 scf7180002754997 96.05 True fake: scaffold gap size wrong estimation (local) 6735901 6777083 1057644 1098513 CM091761.1 scf7180002754997 98.31 True relocation, scaffold gap is present, inconsistency = -11298 6777059 6821047 1109787 1153240 CM091761.1 scf7180002754997 98.05 True relocation, scaffold gap is present, inconsistency = -21737 6821036 6892292 1174966 1246311 CM091761.1 scf7180002754997 99.57 True indel: indel (> 5bp) 6892393 6928746 1246437 1282800 CM091761.1 scf7180002754997 99.77 True CONTIG scf7180002754997 1282800 misassembled 728961 735290 6369 1 CM091752.1 scf7180002754998 98.45 True local misassembly 719521 728804 15684 6370 CM091752.1 scf7180002754998 99.73 True fake: scaffold gap size wrong estimation (local) 689822 719431 45354 15773 CM091752.1 scf7180002754998 99.8 True relocation, scaffold gap is present, inconsistency = -17703 636774 689067 116073 63812 CM091752.1 scf7180002754998 99.87 True relocation, scaffold gap is present, inconsistency = -52168 681683 682193 123332 122822 CM091752.1 scf7180002754998 100.0 True fake: scaffold gap size wrong estimation (local) 616309 636546 188245 168017 CM091752.1 scf7180002754998 99.19 True relocation, scaffold gap is present, inconsistency = -20048 598622 616381 226010 208221 CM091752.1 scf7180002754998 99.54 True fake: scaffold gap size wrong estimation (local) 514454 598623 310536 226752 CM091752.1 scf7180002754998 99.39 True relocation, scaffold gap is present, inconsistency = -73371 559104 559635 339257 338726 CM091752.1 scf7180002754998 99.14 True fake: scaffold gap size wrong estimation (local) 550395 550910 347965 347454 CM091752.1 scf7180002754998 99.13 True fake: scaffold gap size wrong estimation (local) 472110 513261 424378 383225 CM091752.1 scf7180002754998 99.87 True relocation, scaffold gap is present, inconsistency = -42401 513260 514490 425629 424399 CM091752.1 scf7180002754998 99.84 True fake: scaffold gap size wrong estimation (local) 463390 472123 475157 466423 CM091752.1 scf7180002754998 99.81 True translocation, scaffold gap is present 9789011 9806558 475178 492359 CM091763.1 scf7180002754998 96.62 True fake: scaffold gap size wrong estimation (local) 9807214 9814656 492950 500411 CM091763.1 scf7180002754998 99.06 True fake: scaffold gap size wrong estimation (local) 9814795 9815958 501081 502244 CM091763.1 scf7180002754998 98.71 True local misassembly 9817779 9819304 504091 505616 CM091763.1 scf7180002754998 99.67 True local misassembly 9821914 9824475 507573 510134 CM091763.1 scf7180002754998 99.3 True indel: indel (<= 5bp) 9824477 9825951 510135 511609 CM091763.1 scf7180002754998 99.19 True indel: indel (<= 5bp) 9825952 9827186 511611 512845 CM091763.1 scf7180002754998 99.51 True local misassembly 9827755 9828876 513418 514539 CM091763.1 scf7180002754998 99.82 True indel: indel (<= 5bp) 9828877 9829547 514541 515211 CM091763.1 scf7180002754998 99.55 True local misassembly 9831113 9831880 516351 517118 CM091763.1 scf7180002754998 99.87 True indel: indel (> 5bp) 9831954 9832865 517174 518085 CM091763.1 scf7180002754998 99.78 True indel: indel (<= 5bp) 9832866 9833833 518087 519054 CM091763.1 scf7180002754998 99.48 True indel: stretch of mismatches 9834235 9834966 519456 520187 CM091763.1 scf7180002754998 99.32 True fake: scaffold gap size wrong estimation (extensive) 9836017 9844873 528297 537174 CM091763.1 scf7180002754998 98.41 True indel: indel (> 5bp) 9844934 9845999 537242 538307 CM091763.1 scf7180002754998 99.72 True indel: indel (<= 5bp) 9846004 9846675 538308 538979 CM091763.1 scf7180002754998 99.55 True local misassembly 9848843 9850747 538980 540884 CM091763.1 scf7180002754998 99.21 True indel: stretch of mismatches 9851017 9852349 541154 542486 CM091763.1 scf7180002754998 99.77 True fake: scaffold gap size wrong estimation (local) 9856540 9857320 546370 547151 CM091763.1 scf7180002754998 99.1 True local misassembly 9857969 9862499 547290 551667 CM091763.1 scf7180002754998 95.38 True fake: scaffold gap size wrong estimation (local) 9862374 9872683 552704 563035 CM091763.1 scf7180002754998 98.93 True fake: scaffold gap size wrong estimation (local) 9873113 9875371 564084 566342 CM091763.1 scf7180002754998 98.72 True indel: stretch of mismatches 9875847 9876503 566818 567474 CM091763.1 scf7180002754998 99.7 True indel: stretch of mismatches 9876682 9877368 567653 568339 CM091763.1 scf7180002754998 99.56 True indel: indel (<= 5bp) 9877370 9878666 568340 569636 CM091763.1 scf7180002754998 99.61 True indel: indel (> 5bp) 9878899 9879593 569854 570548 CM091763.1 scf7180002754998 98.99 True indel: indel (<= 5bp) 9879594 9883362 570552 574320 CM091763.1 scf7180002754998 99.66 True indel: indel (<= 5bp) 9883364 9884170 574321 575127 CM091763.1 scf7180002754998 99.5 True local misassembly 9884812 9885783 575181 576152 CM091763.1 scf7180002754998 99.79 True indel: indel (<= 5bp) 9885784 9887571 576154 577941 CM091763.1 scf7180002754998 99.38 True indel: stretch of mismatches 9887658 9889260 578028 579630 CM091763.1 scf7180002754998 99.38 True indel: indel (<= 5bp) 9889261 9891629 579632 582000 CM091763.1 scf7180002754998 99.62 True indel: indel (> 5bp) 9891776 9892768 582155 583147 CM091763.1 scf7180002754998 100.0 True indel: indel (<= 5bp) 9892769 9893748 583149 584128 CM091763.1 scf7180002754998 99.18 True indel: indel (<= 5bp) 9893750 9894286 584129 584665 CM091763.1 scf7180002754998 99.81 True indel: indel (<= 5bp) 9894287 9894891 584667 585271 CM091763.1 scf7180002754998 100.0 True local misassembly 9896017 9896933 586418 587334 CM091763.1 scf7180002754998 99.89 True relocation, scaffold gap is present, inconsistency = -12996 9899901 9902452 603298 605844 CM091763.1 scf7180002754998 99.41 True fake: scaffold gap size wrong estimation (local) 9902636 9905942 608422 611728 CM091763.1 scf7180002754998 99.46 True indel: stretch of mismatches 9906024 9907029 611810 612815 CM091763.1 scf7180002754998 100.0 True local misassembly 9908702 9910096 614052 615446 CM091763.1 scf7180002754998 99.78 True local misassembly 9910970 9911703 616324 617057 CM091763.1 scf7180002754998 100.0 True local misassembly 9912236 9912988 617588 618340 CM091763.1 scf7180002754998 99.47 True indel: indel (<= 5bp) 9912990 9914197 618341 619548 CM091763.1 scf7180002754998 99.83 True local misassembly 9914844 9916696 619967 621819 CM091763.1 scf7180002754998 99.03 True indel: indel (<= 5bp) 9916697 9917533 621821 622657 CM091763.1 scf7180002754998 99.28 True indel: indel (> 5bp) 9917658 9920019 622769 625146 CM091763.1 scf7180002754998 98.61 True fake: scaffold gap size wrong estimation (local) 9920021 9947741 630489 658196 CM091763.1 scf7180002754998 99.23 True fake: scaffold gap size wrong estimation (local) 9948123 10036651 658395 745416 CM091763.1 scf7180002754998 97.67 True indel: indel (> 5bp) 10036723 10071453 745441 780271 CM091763.1 scf7180002754998 99.29 True indel: indel (> 5bp) 10071642 10108832 780431 817672 CM091763.1 scf7180002754998 99.3 True local misassembly 10114093 10116822 817673 820403 CM091763.1 scf7180002754998 99.12 True local misassembly 10117574 10128202 820404 831062 CM091763.1 scf7180002754998 99.47 True relocation, scaffold gap is present, inconsistency = -21305 10128736 10130455 852901 854621 CM091763.1 scf7180002754998 99.88 True fake: scaffold gap size wrong estimation (local) 10130444 10185649 856196 910831 CM091763.1 scf7180002754998 98.17 True relocation, scaffold gap is present, inconsistency = -29216 10185657 10257488 940055 1011388 CM091763.1 scf7180002754998 98.28 True fake: scaffold gap size wrong estimation (local) 10257539 10280283 1015304 1037609 CM091763.1 scf7180002754998 97.8 True fake: scaffold gap size wrong estimation (local) 10280548 10316876 1037956 1074269 CM091763.1 scf7180002754998 99.5 True local misassembly 10317265 10379690 1074442 1136881 CM091763.1 scf7180002754998 99.75 True relocation, scaffold gap is present, inconsistency = -89161 10311457 10312146 1157809 1158498 CM091763.1 scf7180002754998 100.0 True fake: scaffold gap size wrong estimation (local) 10380000 10400323 1225864 1245948 CM091763.1 scf7180002754998 98.06 True CONTIG scf7180002754998 1245998 misassembled 8469630 8473763 4306 175 CM091766.1 scf7180002754999 99.66 True fake: not a misassembly (possible transposable element) 8490922 8492357 5741 4307 CM091766.1 scf7180002754999 99.72 True fake: not a misassembly (possible transposable element) 8464862 8467400 8474 5936 CM091766.1 scf7180002754999 99.96 True indel: indel (<= 5bp) 8460453 8464857 12879 8475 CM091766.1 scf7180002754999 99.61 True fake: scaffold gap size wrong estimation (local) 8455571 8459133 16633 13071 CM091766.1 scf7180002754999 99.97 True fake: scaffold gap size wrong estimation (local) 8437162 8455566 39315 20925 CM091766.1 scf7180002754999 99.69 True fake: scaffold gap size wrong estimation (local) 8409995 8436847 65840 39582 CM091766.1 scf7180002754999 97.49 True fake: scaffold gap size wrong estimation (local) 8389972 8409685 85614 66453 CM091766.1 scf7180002754999 96.55 True fake: scaffold gap size wrong estimation (local) 8385806 8389884 89804 85725 CM091766.1 scf7180002754999 99.88 True fake: scaffold gap size wrong estimation (local) 8371349 8384860 106804 89825 CM091766.1 scf7180002754999 96.49 True fake: scaffold gap size wrong estimation (local) 8363215 8366590 110195 106825 CM091766.1 scf7180002754999 99.67 True relocation, scaffold gap is present, inconsistency = -8090 8367879 8371284 113621 110216 CM091766.1 scf7180002754999 99.97 True fake: scaffold gap size wrong estimation (local) 8350566 8363197 128404 115751 CM091766.1 scf7180002754999 99.83 True indel: indel (> 5bp) 8229800 8350413 248049 128481 CM091766.1 scf7180002754999 98.66 True indel: stretch of mismatches 8226561 8229799 251289 248050 CM091766.1 scf7180002754999 99.76 True CONTIG scf7180002754999 255020 misassembled 10576576 10593310 16677 1 CM091765.1 scf7180002755000 99.47 True fake: scaffold gap size wrong estimation (local) 10567133 10571258 21006 16881 CM091765.1 scf7180002755000 99.95 True fake: scaffold gap size wrong estimation (local) 10533947 10565470 52581 21028 CM091765.1 scf7180002755000 99.83 True relocation, scaffold gap is present, inconsistency = 30499 10496601 10503427 59432 52602 CM091765.1 scf7180002755000 99.84 True relocation, scaffold gap is present, inconsistency = -42857 10503620 10533546 95274 65344 CM091765.1 scf7180002755000 99.89 True translocation 8360870 8416280 150614 95275 CM091763.1 scf7180002755000 99.29 True relocation, scaffold gap is present, inconsistency = -86172 8416370 8427757 181211 169899 CM091763.1 scf7180002755000 98.92 True translocation, scaffold gap is present 10571271 10576466 187555 182363 CM091765.1 scf7180002755000 99.92 True translocation, scaffold gap is present 8318516 8360830 234434 192110 CM091763.1 scf7180002755000 99.21 True relocation, scaffold gap is present, inconsistency = -23142 8284621 8318546 291484 257546 CM091763.1 scf7180002755000 99.52 True relocation, scaffold gap is present, inconsistency = -21752 8217745 8284617 380185 313240 CM091763.1 scf7180002755000 99.63 True local misassembly 8093104 8216660 504919 381293 CM091763.1 scf7180002755000 99.47 True indel: indel (> 5bp) 8089317 8093046 508728 505002 CM091763.1 scf7180002755000 99.6 True relocation, scaffold gap is present, inconsistency = -19917 8088375 8089287 529587 528675 CM091763.1 scf7180002755000 99.89 True fake: scaffold gap size wrong estimation (local) 8068650 8088471 550220 530402 CM091763.1 scf7180002755000 99.39 True fake: scaffold gap size wrong estimation (local) 8066560 8067876 558731 557410 CM091763.1 scf7180002755000 98.87 True indel: indel (> 5bp) 8049669 8066498 575609 558773 CM091763.1 scf7180002755000 99.5 True relocation, scaffold gap is present, inconsistency = -12342 8031738 8049634 605876 587986 CM091763.1 scf7180002755000 99.42 True fake: scaffold gap size wrong estimation (local) 8024017 8031256 614366 607122 CM091763.1 scf7180002755000 99.37 True fake: scaffold gap size wrong estimation (local) 8010083 8024015 634020 620067 CM091763.1 scf7180002755000 99.5 True fake: scaffold gap size wrong estimation (local) 7968624 8009887 675397 634128 CM091763.1 scf7180002755000 99.3 True fake: scaffold gap size wrong estimation (local) 7961380 7968503 682635 675514 CM091763.1 scf7180002755000 99.35 True fake: scaffold gap size wrong estimation (local) 7904635 7960402 746099 682674 CM091763.1 scf7180002755000 98.01 True relocation, scaffold gap is present, inconsistency = -13254 7888320 7904534 775655 759454 CM091763.1 scf7180002755000 99.39 True fake: scaffold gap size wrong estimation (local) 7872691 7888186 795322 779824 CM091763.1 scf7180002755000 99.19 True indel: indel (<= 5bp) 7835249 7872687 834954 795323 CM091763.1 scf7180002755000 98.43 True relocation, scaffold gap is present, inconsistency = -14097 7646370 7835262 1037956 849038 CM091763.1 scf7180002755000 99.61 True relocation, scaffold gap is present, inconsistency = -27525 7492694 7645896 1218798 1065955 CM091763.1 scf7180002755000 99.27 True relocation, scaffold gap is present, inconsistency = -11338 7449059 7492680 1273597 1230150 CM091763.1 scf7180002755000 98.91 True CONTIG scf7180002755000 1273597 misassembled 11447034 11481565 34340 1 CM091757.1 scf7180002755001 98.89 True fake: scaffold gap size wrong estimation (extensive) 11428684 11447048 59723 41343 CM091757.1 scf7180002755001 99.48 True fake: scaffold gap size wrong estimation (local) 11332872 11427564 155227 60489 CM091757.1 scf7180002755001 99.48 True fake: scaffold gap size wrong estimation (local) 11325459 11332862 168934 161525 CM091757.1 scf7180002755001 99.49 True indel: indel (<= 5bp) 11308224 11325413 186163 168978 CM091757.1 scf7180002755001 99.53 True fake: scaffold gap size wrong estimation (extensive) 11258206 11308221 244050 193984 CM091757.1 scf7180002755001 99.54 True relocation, scaffold gap is present, inconsistency = -10049 11251903 11257801 260404 254504 CM091757.1 scf7180002755001 99.92 True fake: scaffold gap size wrong estimation (local) 11216989 11251883 300974 266117 CM091757.1 scf7180002755001 99.35 True local misassembly 11049066 11216418 468293 301594 CM091757.1 scf7180002755001 98.93 True relocation, scaffold gap is present, inconsistency = -12863 10941647 11049036 588737 481186 CM091757.1 scf7180002755001 99.46 True fake: scaffold gap size wrong estimation (local) 10921512 10941486 608971 588898 CM091757.1 scf7180002755001 98.6 True fake: scaffold gap size wrong estimation (local) 10773203 10920662 757592 610095 CM091757.1 scf7180002755001 99.65 True relocation, inconsistency = 46321 10717568 10719662 766921 764812 CM091757.1 scf7180002755001 98.58 True indel: indel (> 5bp) 10351714 10717513 1133003 766966 CM091757.1 scf7180002755001 99.48 True relocation, scaffold gap is present, inconsistency = -30589 10321386 10352046 1193737 1163260 CM091757.1 scf7180002755001 97.54 True translocation, scaffold gap is present 8373045 8400640 1193849 1221448 CM091765.1 scf7180002755001 99.54 True translocation, scaffold gap is present 10236912 10321341 1305942 1221469 CM091757.1 scf7180002755001 99.35 True translocation, scaffold gap is present 8400740 8425949 1309870 1335056 CM091765.1 scf7180002755001 99.26 True indel: indel (> 5bp) 8426000 8427204 1335117 1336321 CM091765.1 scf7180002755001 99.92 True indel: indel (<= 5bp) 8427212 8428118 1336326 1337232 CM091765.1 scf7180002755001 99.78 True indel: indel (<= 5bp) 8428120 8428641 1337233 1337754 CM091765.1 scf7180002755001 99.43 True indel: indel (<= 5bp) 8428642 8429314 1337756 1338428 CM091765.1 scf7180002755001 99.55 True indel: indel (<= 5bp) 8429315 8432131 1338430 1341246 CM091765.1 scf7180002755001 99.86 True indel: indel (<= 5bp) 8432132 8432833 1341248 1341949 CM091765.1 scf7180002755001 99.15 True indel: indel (<= 5bp) 8432835 8434642 1341950 1343757 CM091765.1 scf7180002755001 99.72 True indel: indel (<= 5bp) 8434643 8439975 1343759 1349091 CM091765.1 scf7180002755001 99.83 True indel: indel (<= 5bp) 8439976 8442527 1349093 1351644 CM091765.1 scf7180002755001 99.96 True indel: indel (<= 5bp) 8442528 8443708 1351646 1352826 CM091765.1 scf7180002755001 100.0 True indel: indel (<= 5bp) 8443709 8445158 1352828 1354277 CM091765.1 scf7180002755001 99.93 True local misassembly 8445986 8448839 1354278 1357131 CM091765.1 scf7180002755001 99.96 True indel: indel (<= 5bp) 8448841 8452884 1357132 1361175 CM091765.1 scf7180002755001 99.98 True indel: indel (<= 5bp) 8453185 8453891 1361474 1362180 CM091765.1 scf7180002755001 99.86 True local misassembly 8454593 8456120 1362781 1364308 CM091765.1 scf7180002755001 99.93 True indel: indel (<= 5bp) 8456121 8456991 1364310 1365180 CM091765.1 scf7180002755001 99.2 True indel: indel (<= 5bp) 8456993 8458856 1365181 1367044 CM091765.1 scf7180002755001 99.25 True local misassembly 8459139 8461034 1367095 1368990 CM091765.1 scf7180002755001 99.63 True indel: indel (<= 5bp) 8461484 8462748 1369438 1370702 CM091765.1 scf7180002755001 99.53 True indel: indel (<= 5bp) 8462750 8463615 1370703 1371568 CM091765.1 scf7180002755001 99.65 True indel: indel (> 5bp) 8464072 8465283 1372018 1373229 CM091765.1 scf7180002755001 99.67 True indel: indel (<= 5bp) 8465533 8466918 1373481 1374866 CM091765.1 scf7180002755001 99.71 True indel: indel (<= 5bp) 8466920 8468915 1374867 1376862 CM091765.1 scf7180002755001 99.65 True translocation, scaffold gap is present 10235862 10236586 1378695 1377971 CM091757.1 scf7180002755001 100.0 True indel: indel (> 5bp) 10233411 10235479 1381130 1379062 CM091757.1 scf7180002755001 99.66 True indel: indel (> 5bp) 10232787 10233410 1381762 1381139 CM091757.1 scf7180002755001 99.68 True indel: indel (<= 5bp) 10232049 10232786 1382501 1381764 CM091757.1 scf7180002755001 99.05 True translocation, scaffold gap is present 8470462 8471386 1383489 1384413 CM091765.1 scf7180002755001 99.89 True indel: indel (<= 5bp) 8471388 8472746 1384414 1385772 CM091765.1 scf7180002755001 99.63 True indel: indel (<= 5bp) 8472795 8473536 1385824 1386565 CM091765.1 scf7180002755001 99.87 True fake: scaffold gap size wrong estimation (local) 8473537 8474572 1386621 1387656 CM091765.1 scf7180002755001 99.52 True translocation, scaffold gap is present 10230200 10232048 1389525 1387677 CM091757.1 scf7180002755001 99.84 True indel: indel (<= 5bp) 10227580 10230199 1392146 1389527 CM091757.1 scf7180002755001 99.62 True indel: indel (<= 5bp) 10226784 10227578 1392941 1392147 CM091757.1 scf7180002755001 99.62 True indel: indel (<= 5bp) 10223871 10226782 1395853 1392942 CM091757.1 scf7180002755001 99.83 True fake: scaffold gap size wrong estimation (local) 10205957 10222651 1413759 1397050 CM091757.1 scf7180002755001 99.6 True translocation, scaffold gap is present 8475124 8509068 1413780 1447724 CM091765.1 scf7180002755001 99.39 True translocation, scaffold gap is present 10192740 10205955 1461005 1447745 CM091757.1 scf7180002755001 99.01 True translocation, scaffold gap is present 8509172 8530755 1461026 1482623 CM091765.1 scf7180002755001 98.02 True translocation, scaffold gap is present 10191507 10192572 1484079 1483014 CM091757.1 scf7180002755001 99.72 True indel: indel (<= 5bp) 10189141 10191504 1486443 1484080 CM091757.1 scf7180002755001 99.58 True indel: indel (<= 5bp) 10188143 10188861 1487437 1486719 CM091757.1 scf7180002755001 99.86 True indel: indel (> 5bp) 10185862 10188128 1489704 1487438 CM091757.1 scf7180002755001 99.78 True indel: indel (> 5bp) 10184976 10185566 1490637 1490047 CM091757.1 scf7180002755001 99.49 True indel: indel (> 5bp) 10183995 10184960 1491603 1490638 CM091757.1 scf7180002755001 99.79 True indel: indel (<= 5bp) 10181028 10183994 1494571 1491605 CM091757.1 scf7180002755001 99.76 True local misassembly 10179549 10180253 1496053 1495349 CM091757.1 scf7180002755001 99.72 True local misassembly 10177373 10178641 1498230 1496962 CM091757.1 scf7180002755001 99.84 True indel: indel (<= 5bp) 10176520 10177372 1499088 1498236 CM091757.1 scf7180002755001 99.41 True indel: indel (<= 5bp) 10175208 10176519 1500402 1499091 CM091757.1 scf7180002755001 99.62 True indel: indel (<= 5bp) 10171663 10174843 1503950 1500770 CM091757.1 scf7180002755001 99.69 True relocation, scaffold gap is present, inconsistency = -12301 10170617 10171527 1517297 1516387 CM091757.1 scf7180002755001 99.78 True indel: indel (<= 5bp) 10169803 10170614 1518109 1517298 CM091757.1 scf7180002755001 100.0 True indel: indel (<= 5bp) 10164870 10169802 1523043 1518111 CM091757.1 scf7180002755001 99.82 True indel: indel (<= 5bp) 10163930 10164869 1523984 1523045 CM091757.1 scf7180002755001 99.89 True indel: indel (<= 5bp) 10163341 10163928 1524572 1523985 CM091757.1 scf7180002755001 99.83 True indel: indel (<= 5bp) 10162423 10163340 1525491 1524574 CM091757.1 scf7180002755001 99.78 True indel: indel (<= 5bp) 10161174 10162060 1526739 1525853 CM091757.1 scf7180002755001 100.0 True indel: indel (<= 5bp) 10159949 10161173 1527965 1526741 CM091757.1 scf7180002755001 99.76 True indel: stretch of mismatches 10159127 10159736 1528787 1528178 CM091757.1 scf7180002755001 100.0 True indel: stretch of mismatches 10154540 10158657 1533374 1529257 CM091757.1 scf7180002755001 99.9 True local misassembly 10153308 10153832 1534611 1534087 CM091757.1 scf7180002755001 100.0 True fake: not a misassembly (possible transposable element) 8543027 8549004 1534632 1540633 CM091765.1 scf7180002755001 98.84 True fake: not a misassembly (possible transposable element) 10137698 10153380 1556373 1540656 CM091757.1 scf7180002755001 99.52 True relocation, scaffold gap is present, inconsistency = -11144 10031418 10137685 1673859 1567530 CM091757.1 scf7180002755001 99.4 True fake: scaffold gap size wrong estimation (local) 10012480 10031274 1693059 1674215 CM091757.1 scf7180002755001 99.62 True fake: scaffold gap size wrong estimation (local) 10010613 10011591 1694928 1693950 CM091757.1 scf7180002755001 99.69 True indel: indel (<= 5bp) 10009532 10010611 1696008 1694929 CM091757.1 scf7180002755001 98.15 True local misassembly 9943512 10008973 1761407 1696024 CM091757.1 scf7180002755001 99.47 True relocation, scaffold gap is present, inconsistency = -63287 9896840 9943491 1871329 1824715 CM091757.1 scf7180002755001 99.49 True indel: indel (> 5bp) 9749741 9896730 2018376 1871380 CM091757.1 scf7180002755001 99.49 True indel: indel (<= 5bp) 9724514 9749705 2043619 2018413 CM091757.1 scf7180002755001 99.54 True relocation, scaffold gap is present, inconsistency = -43159 9705244 9724491 2106043 2086801 CM091757.1 scf7180002755001 99.58 True CONTIG scf7180002755001 2125464 misassembled 664678 754734 1 90090 CM091751.1 scf7180002755002 99.51 True fake: scaffold gap size wrong estimation (local) 755593 786019 90515 120958 CM091751.1 scf7180002755002 99.11 True relocation, scaffold gap is present, inconsistency = -17441 774280 774915 126660 127302 CM091751.1 scf7180002755002 99.46 True fake: scaffold gap size wrong estimation (local) 786275 819623 138000 171362 CM091751.1 scf7180002755002 98.97 True translocation, scaffold gap is present 2889532 2917062 204871 232429 CM091756.1 scf7180002755002 99.42 True indel: indel (> 5bp) 2917147 2967243 232581 281900 CM091756.1 scf7180002755002 97.69 True relocation, scaffold gap is present, inconsistency = -70058 2967243 2999007 351958 383774 CM091756.1 scf7180002755002 99.36 True fake: scaffold gap size wrong estimation (local) 2999109 3025727 383857 410843 CM091756.1 scf7180002755002 97.67 True relocation, scaffold gap is present, inconsistency = -18554 3025774 3090623 429444 494358 CM091756.1 scf7180002755002 99.23 True fake: scaffold gap size wrong estimation (local) 3091569 3101184 494387 504004 CM091756.1 scf7180002755002 99.31 True fake: scaffold gap size wrong estimation (extensive) 3101332 3129149 511377 539190 CM091756.1 scf7180002755002 99.56 True translocation, scaffold gap is present 12722244 12729993 559736 567482 CM091759.1 scf7180002755002 99.0 True translocation, scaffold gap is present 3129092 3139607 572818 583333 CM091756.1 scf7180002755002 99.51 True CONTIG scf7180002755002 592081 misassembled 5242593 5245203 2612 1 CM091760.1 scf7180002755003 99.66 True fake: scaffold gap size wrong estimation (local) 5238955 5241534 5925 3348 CM091760.1 scf7180002755003 98.61 True fake: scaffold gap size wrong estimation (local) 5235852 5238199 10989 8636 CM091760.1 scf7180002755003 99.45 True fake: scaffold gap size wrong estimation (local) 5175722 5235855 72057 11946 CM091760.1 scf7180002755003 99.29 True relocation, scaffold gap is present, inconsistency = -57547 5154128 5175967 150915 129359 CM091760.1 scf7180002755003 97.59 True fake: scaffold gap size wrong estimation (local) 5121981 5154084 184897 152791 CM091760.1 scf7180002755003 99.27 True relocation, scaffold gap is present, inconsistency = -32282 5119238 5121976 219907 217184 CM091760.1 scf7180002755003 99.05 True indel: indel (<= 5bp) 5079054 5119196 259734 219954 CM091760.1 scf7180002755003 98.34 True relocation, scaffold gap is present, inconsistency = -11148 4994170 5079092 355363 270844 CM091760.1 scf7180002755003 98.68 True fake: scaffold gap size wrong estimation (local) 4989986 4993891 363614 358252 CM091760.1 scf7180002755003 95.63 True fake: not a misassembly (possible transposable element) 819618 823089 367082 363615 CM091751.1 scf7180002755003 99.41 True fake: not a misassembly (possible transposable element) 4982930 4990017 374237 367132 CM091760.1 scf7180002755003 99.06 True fake: scaffold gap size wrong estimation (local) 4969831 4982545 393095 380410 CM091760.1 scf7180002755003 99.1 True fake: scaffold gap size wrong estimation (local) 4864776 4969733 498217 393199 CM091760.1 scf7180002755003 99.36 True fake: scaffold gap size wrong estimation (local) 4856784 4864532 508241 500477 CM091760.1 scf7180002755003 98.92 True fake: scaffold gap size wrong estimation (local) 4846293 4856356 525502 515432 CM091760.1 scf7180002755003 99.48 True fake: scaffold gap size wrong estimation (extensive) 4807911 4844634 573794 537047 CM091760.1 scf7180002755003 99.33 True relocation, scaffold gap is present, inconsistency = -22679 4749557 4807444 654730 596940 CM091760.1 scf7180002755003 99.39 True relocation, scaffold gap is present, inconsistency = -58068 4729509 4749560 732873 712795 CM091760.1 scf7180002755003 99.56 True fake: scaffold gap size wrong estimation (extensive) 4699326 4729584 772568 742289 CM091760.1 scf7180002755003 99.82 True relocation, scaffold gap is present, inconsistency = -19501 4694523 4699065 796872 792330 CM091760.1 scf7180002755003 99.96 True fake: scaffold gap size wrong estimation (local) 4677045 4691455 814239 799825 CM091760.1 scf7180002755003 99.47 True fake: scaffold gap size wrong estimation (local) 4605597 4676678 889247 818239 CM091760.1 scf7180002755003 99.59 True relocation, scaffold gap is present, inconsistency = -62737 4637903 4638493 919678 919088 CM091760.1 scf7180002755003 99.79 True fake: scaffold gap size wrong estimation (local) 4604714 4605552 953069 952231 CM091760.1 scf7180002755003 99.76 True indel: indel (<= 5bp) 4602862 4604713 954922 953071 CM091760.1 scf7180002755003 99.89 True indel: indel (<= 5bp) 4600695 4602861 957090 954924 CM091760.1 scf7180002755003 99.03 True local misassembly 4599615 4600396 957872 957091 CM091760.1 scf7180002755003 100.0 True indel: indel (<= 5bp) 4597228 4599416 960257 958069 CM091760.1 scf7180002755003 99.77 True indel: indel (> 5bp) 4591433 4597227 966067 960273 CM091760.1 scf7180002755003 99.88 True indel: indel (<= 5bp) 4589536 4591431 967963 966068 CM091760.1 scf7180002755003 99.84 True indel: indel (<= 5bp) 4588995 4589535 968505 967965 CM091760.1 scf7180002755003 99.44 True local misassembly 4582363 4588298 974440 968506 CM091760.1 scf7180002755003 99.81 True relocation, scaffold gap is present, inconsistency = -18223 4588369 4588922 986657 986104 CM091760.1 scf7180002755003 99.28 True fake: scaffold gap size wrong estimation (local) 4553636 4582459 1020692 991864 CM091760.1 scf7180002755003 99.74 True relocation, scaffold gap is present, inconsistency = -26915 4547754 4553595 1053505 1047648 CM091760.1 scf7180002755003 99.25 True fake: scaffold gap size wrong estimation (local) 4485350 4547665 1115533 1053585 CM091760.1 scf7180002755003 98.73 True relocation, scaffold gap is present, inconsistency = -30410 4482618 4485245 1148674 1146048 CM091760.1 scf7180002755003 99.35 True fake: scaffold gap size wrong estimation (local) 4463806 4482603 1169822 1151366 CM091760.1 scf7180002755003 97.04 True fake: scaffold gap size wrong estimation (extensive) 4421804 4463217 1219322 1177861 CM091760.1 scf7180002755003 99.32 True relocation, scaffold gap is present, inconsistency = -22291 4372246 4417054 1290858 1246363 CM091760.1 scf7180002755003 99.01 True indel: indel (> 5bp) 4370769 4372154 1292413 1291018 CM091760.1 scf7180002755003 98.5 True relocation, scaffold gap is present, inconsistency = -46158 4345030 4370805 1364044 1338535 CM091760.1 scf7180002755003 98.13 True relocation, scaffold gap is present, inconsistency = -12753 4313681 4345033 1408210 1376794 CM091760.1 scf7180002755003 99.21 True indel: stretch of mismatches 4234907 4313668 1487739 1408223 CM091760.1 scf7180002755003 99.09 True translocation 8722804 8753528 1518431 1487740 CM091756.1 scf7180002755003 99.66 True indel: indel (<= 5bp) 8468150 8722725 1773089 1518513 CM091756.1 scf7180002755003 99.47 True relocation, scaffold gap is present, inconsistency = -151276 8462340 8466380 1930177 1926135 CM091756.1 scf7180002755003 99.75 True fake: scaffold gap size wrong estimation (local) 8455043 8458916 1934069 1930198 CM091756.1 scf7180002755003 99.43 True relocation, scaffold gap is present, inconsistency = -8931 8460701 8462342 1937343 1935701 CM091756.1 scf7180002755003 99.7 True fake: scaffold gap size wrong estimation (local) 8459462 8460667 1939704 1938499 CM091756.1 scf7180002755003 99.17 True fake: scaffold gap size wrong estimation (local) 8453022 8454901 1941624 1939725 CM091756.1 scf7180002755003 99.51 True fake: scaffold gap size wrong estimation (local) 8423438 8452834 1970424 1941813 CM091756.1 scf7180002755003 96.72 True indel: indel (> 5bp) 8416638 8423257 1977207 1970587 CM091756.1 scf7180002755003 98.97 True indel: indel (> 5bp) 8404513 8416444 1988943 1977326 CM091756.1 scf7180002755003 95.77 True local misassembly 8401973 8404076 1991415 1989284 CM091756.1 scf7180002755003 98.91 True fake: scaffold gap size wrong estimation (local) 8400186 8401582 1993211 1991815 CM091756.1 scf7180002755003 99.5 True indel: indel (<= 5bp) 8399454 8400184 1993942 1993212 CM091756.1 scf7180002755003 99.59 True indel: indel (<= 5bp) 8397812 8399384 1995586 1994014 CM091756.1 scf7180002755003 99.75 True local misassembly 8395568 8396393 1997834 1997009 CM091756.1 scf7180002755003 99.64 True fake: scaffold gap size wrong estimation (local) 8393634 8394217 1999323 1998740 CM091756.1 scf7180002755003 100.0 True indel: indel (> 5bp) 8392175 8393194 2000790 1999771 CM091756.1 scf7180002755003 99.71 True fake: scaffold gap size wrong estimation (local) 8389766 8390619 2002870 2002017 CM091756.1 scf7180002755003 99.41 True local misassembly 8386076 8389234 2006982 2003828 CM091756.1 scf7180002755003 98.92 True local misassembly 8380366 8384764 2012310 2007913 CM091756.1 scf7180002755003 99.27 True fake: scaffold gap size wrong estimation (local) 8367654 8380063 2029041 2017005 CM091756.1 scf7180002755003 96.27 True fake: scaffold gap size wrong estimation (local) 8353079 8367439 2045042 2030674 CM091756.1 scf7180002755003 98.13 True fake: scaffold gap size wrong estimation (local) 8340082 8352864 2061988 2049190 CM091756.1 scf7180002755003 98.69 True fake: scaffold gap size wrong estimation (extensive) 8319944 8340056 2089539 2069373 CM091756.1 scf7180002755003 99.07 True CONTIG scf7180002755003 2089590 misassembled 1914826 1932158 17059 1 CM091759.1 scf7180002755004 97.99 True translocation, scaffold gap is present 4368034 4368757 17233 17956 CM091754.1 scf7180002755004 99.83 True translocation, scaffold gap is present 1904188 1914936 41079 30423 CM091759.1 scf7180002755004 98.6 True fake: scaffold gap size wrong estimation (local) 1864417 1903326 80395 41524 CM091759.1 scf7180002755004 99.47 True indel: indel (> 5bp) 1673440 1864278 271320 80458 CM091759.1 scf7180002755004 99.79 True indel: indel (<= 5bp) 1610546 1673387 334216 271374 CM091759.1 scf7180002755004 99.55 True inversion, scaffold gap is present 1576420 1610548 334478 368638 CM091759.1 scf7180002755004 99.41 True relocation, scaffold gap is present, inconsistency = -14843 1555143 1575285 404766 384616 CM091759.1 scf7180002755004 99.6 True fake: scaffold gap size wrong estimation (extensive) 1547987 1554520 420236 413701 CM091759.1 scf7180002755004 99.8 True fake: scaffold gap size wrong estimation (local) 1540669 1547300 427459 420786 CM091759.1 scf7180002755004 99.36 True translocation 9594063 9621407 454760 427460 CM091758.1 scf7180002755004 99.25 True indel: indel (> 5bp) 9576853 9593985 471969 454857 CM091758.1 scf7180002755004 99.54 True relocation, scaffold gap is present, inconsistency = -45229 9536764 9576776 557292 517275 CM091758.1 scf7180002755004 99.36 True indel: indel (> 5bp) 9535608 9536699 558425 557333 CM091758.1 scf7180002755004 99.54 True relocation, scaffold gap is present, inconsistency = -15251 9482510 9535729 626825 573555 CM091758.1 scf7180002755004 99.28 True indel: indel (> 5bp) 9450234 9482448 659128 626893 CM091758.1 scf7180002755004 99.57 True relocation, scaffold gap is present, inconsistency = -75576 9510771 9511453 674180 673485 CM091758.1 scf7180002755004 99.82 True fake: scaffold gap size wrong estimation (local) 9467997 9468607 717076 716450 CM091758.1 scf7180002755004 99.47 True fake: scaffold gap size wrong estimation (local) 9378033 9450229 806973 734865 CM091758.1 scf7180002755004 99.26 True indel: indel (> 5bp) 9348866 9377998 836326 806998 CM091758.1 scf7180002755004 98.86 True relocation, scaffold gap is present, inconsistency = -10847 9346952 9348901 849087 847138 CM091758.1 scf7180002755004 99.64 True indel: indel (<= 5bp) 9320116 9346858 875992 849184 CM091758.1 scf7180002755004 99.17 True fake: scaffold gap size wrong estimation (local) 9304400 9320005 898434 882831 CM091758.1 scf7180002755004 99.43 True relocation, scaffold gap is present, inconsistency = -15069 9223450 9304834 994052 913069 CM091758.1 scf7180002755004 98.49 True relocation, scaffold gap is present, inconsistency = -34747 9210082 9223457 1042182 1028792 CM091758.1 scf7180002755004 99.01 True indel: stretch of mismatches 9161194 9210081 1091054 1042183 CM091758.1 scf7180002755004 99.38 True indel: indel (> 5bp) 9151217 9161150 1101019 1091087 CM091758.1 scf7180002755004 99.77 True indel: indel (> 5bp) 9137375 9151193 1114892 1101072 CM091758.1 scf7180002755004 99.55 True local misassembly 9129319 9137028 1123230 1115525 CM091758.1 scf7180002755004 99.44 True indel: indel (<= 5bp) 9038138 9129246 1214200 1123305 CM091758.1 scf7180002755004 99.11 True relocation, scaffold gap is present, inconsistency = -33649 9025759 9038198 1259870 1247789 CM091758.1 scf7180002755004 95.95 True fake: scaffold gap size wrong estimation (local) 8968031 9025654 1317494 1259891 CM091758.1 scf7180002755004 98.98 True relocation, scaffold gap is present, inconsistency = -48404 8950181 8967974 1383751 1365955 CM091758.1 scf7180002755004 99.46 True relocation, scaffold gap is present, inconsistency = -17860 8868673 8950167 1483092 1401625 CM091758.1 scf7180002755004 99.3 True indel: indel (> 5bp) 8805367 8868540 1546355 1483217 CM091758.1 scf7180002755004 99.31 True relocation, scaffold gap is present, inconsistency = -83814 8880291 8880773 1555269 1554763 CM091758.1 scf7180002755004 98.56 True fake: scaffold gap size wrong estimation (local) 8789981 8805119 1645213 1630074 CM091758.1 scf7180002755004 99.61 True fake: scaffold gap size wrong estimation (local) 8626605 8789972 1810459 1646969 CM091758.1 scf7180002755004 99.35 True indel: indel (> 5bp) 8616518 8626582 1820594 1810530 CM091758.1 scf7180002755004 99.56 True CONTIG scf7180002755004 1820845 misassembled 10716160 10825912 110303 355 CM091754.1 scf7180002755005 99.29 True fake: scaffold gap size wrong estimation (local) 10705109 10716052 121317 110375 CM091754.1 scf7180002755005 99.81 True fake: scaffold gap size wrong estimation (local) 10631951 10705108 197441 123079 CM091754.1 scf7180002755005 97.27 True fake: scaffold gap size wrong estimation (local) 10619305 10631823 210044 197554 CM091754.1 scf7180002755005 99.12 True fake: scaffold gap size wrong estimation (local) 10604176 10618274 224290 210139 CM091754.1 scf7180002755005 99.18 True fake: scaffold gap size wrong estimation (local) 10593894 10603299 233720 224311 CM091754.1 scf7180002755005 99.61 True fake: scaffold gap size wrong estimation (extensive) 10529348 10593880 306792 242187 CM091754.1 scf7180002755005 99.67 True fake: scaffold gap size wrong estimation (local) 10512192 10528779 326579 309916 CM091754.1 scf7180002755005 99.26 True relocation, scaffold gap is present, inconsistency = -14109 10500442 10512145 352085 340735 CM091754.1 scf7180002755005 96.78 True fake: scaffold gap size wrong estimation (local) 10413842 10500217 437807 352283 CM091754.1 scf7180002755005 98.61 True fake: scaffold gap size wrong estimation (local) 10368423 10413766 487640 442164 CM091754.1 scf7180002755005 99.4 True fake: scaffold gap size wrong estimation (local) 10345408 10368174 511545 488698 CM091754.1 scf7180002755005 99.51 True relocation, scaffold gap is present, inconsistency = -18889 10320055 10345386 555567 530456 CM091754.1 scf7180002755005 98.31 True relocation, scaffold gap is present, inconsistency = -13304 10310646 10320003 578304 568923 CM091754.1 scf7180002755005 99.39 True translocation, scaffold gap is present 5827723 5859745 610378 578325 CM091756.1 scf7180002755005 99.26 True relocation, scaffold gap is present, inconsistency = -31128 5843489 5844010 625741 625219 CM091756.1 scf7180002755005 99.55 True fake: scaffold gap size wrong estimation (local) 5793490 5827710 675807 641539 CM091756.1 scf7180002755005 99.27 True relocation, scaffold gap is present, inconsistency = -21663 5770608 5793165 719935 697795 CM091756.1 scf7180002755005 97.57 True fake: scaffold gap size wrong estimation (local) 5768886 5770427 725750 724210 CM091756.1 scf7180002755005 99.87 True fake: scaffold gap size wrong estimation (local) 5749700 5768877 746283 727209 CM091756.1 scf7180002755005 97.78 True fake: scaffold gap size wrong estimation (extensive) 5732799 5749595 771070 754256 CM091756.1 scf7180002755005 99.32 True fake: scaffold gap size wrong estimation (local) 5716080 5731987 787029 771113 CM091756.1 scf7180002755005 99.62 True relocation, scaffold gap is present, inconsistency = -15807 5652591 5716080 870016 802836 CM091756.1 scf7180002755005 98.96 True fake: scaffold gap size wrong estimation (local) 5609628 5652593 919624 876948 CM091756.1 scf7180002755005 98.65 True relocation, scaffold gap is present, inconsistency = -29638 5608462 5609285 950428 949605 CM091756.1 scf7180002755005 99.03 True indel: indel (> 5bp) 5607276 5608461 951620 950435 CM091756.1 scf7180002755005 100.0 True indel: indel (<= 5bp) 5606683 5607272 952210 951621 CM091756.1 scf7180002755005 99.66 True indel: indel (<= 5bp) 5605952 5606682 952942 952212 CM091756.1 scf7180002755005 100.0 True indel: indel (> 5bp) 5603614 5605945 955274 952943 CM091756.1 scf7180002755005 99.57 True fake: scaffold gap size wrong estimation (local) 5549813 5603613 1015012 961196 CM091756.1 scf7180002755005 99.29 True fake: scaffold gap size wrong estimation (local) 5496282 5548979 1067839 1015111 CM091756.1 scf7180002755005 99.46 True translocation, scaffold gap is present 5720084 5733251 1068585 1081777 CM091766.1 scf7180002755005 98.95 True relocation, scaffold gap is present, inconsistency = -13421 5733242 5794621 1095189 1156604 CM091766.1 scf7180002755005 99.48 True translocation, scaffold gap is present 5479050 5496254 1186566 1169357 CM091756.1 scf7180002755005 99.53 True relocation, scaffold gap is present, inconsistency = -17653 5457090 5479049 1226209 1204220 CM091756.1 scf7180002755005 99.53 True translocation 5794666 5798782 1226210 1230327 CM091766.1 scf7180002755005 99.4 True translocation, scaffold gap is present 5432600 5457153 1265406 1240817 CM091756.1 scf7180002755005 99.46 True translocation, scaffold gap is present 5798771 5895465 1267944 1364624 CM091766.1 scf7180002755005 99.61 True translocation, scaffold gap is present 5430983 5432403 1441151 1439730 CM091756.1 scf7180002755005 99.44 True fake: scaffold gap size wrong estimation (local) 5419084 5430900 1456068 1443965 CM091756.1 scf7180002755005 98.96 True fake: scaffold gap size wrong estimation (local) 5375259 5419022 1500527 1456643 CM091756.1 scf7180002755005 99.18 True translocation, scaffold gap is present 5895483 5931866 1506816 1543205 CM091766.1 scf7180002755005 99.4 True relocation, scaffold gap is present, inconsistency = -35004 5919819 5920319 1566162 1566669 CM091766.1 scf7180002755005 99.76 True fake: scaffold gap size wrong estimation (local) 5924069 5924670 1570423 1571100 CM091766.1 scf7180002755005 96.64 True fake: not a misassembly (possible transposable element) 5371536 5375264 1581719 1577984 CM091756.1 scf7180002755005 99.52 True fake: not a misassembly (possible transposable element) 5931872 5948931 1581740 1598793 CM091766.1 scf7180002755005 99.35 True translocation, scaffold gap is present 5357725 5371531 1613404 1599599 CM091756.1 scf7180002755005 99.26 True relocation, scaffold gap is present, inconsistency = -12609 5344549 5357717 1639197 1626021 CM091756.1 scf7180002755005 99.35 True translocation, scaffold gap is present 5948914 6006570 1639885 1697565 CM091766.1 scf7180002755005 99.45 True relocation, scaffold gap is present, inconsistency = -49993 6007062 6096026 1748050 1837220 CM091766.1 scf7180002755005 99.08 True local misassembly 6096181 6179909 1837279 1920954 CM091766.1 scf7180002755005 98.88 True relocation, scaffold gap is present, inconsistency = -59868 6180118 6227022 1981031 2027919 CM091766.1 scf7180002755005 99.51 True relocation, scaffold gap is present, inconsistency = -47096 6227029 6281786 2075022 2129783 CM091766.1 scf7180002755005 99.35 True indel: indel (> 5bp) 6281822 6292507 2129837 2140544 CM091766.1 scf7180002755005 99.12 True relocation, scaffold gap is present, inconsistency = -17808 6292492 6312954 2158337 2178804 CM091766.1 scf7180002755005 99.22 True fake: scaffold gap size wrong estimation (local) 6312985 6345093 2181221 2213426 CM091766.1 scf7180002755005 98.77 True fake: scaffold gap size wrong estimation (extensive) 6345345 6391342 2222804 2268789 CM091766.1 scf7180002755005 99.08 True relocation, scaffold gap is present, inconsistency = -38150 6391367 6439976 2306964 2355833 CM091766.1 scf7180002755005 98.58 True fake: scaffold gap size wrong estimation (local) 6440081 6468997 2355944 2384812 CM091766.1 scf7180002755005 98.61 True indel: indel (> 5bp) 6469291 6489484 2385123 2405357 CM091766.1 scf7180002755005 99.04 True relocation, scaffold gap is present, inconsistency = -35628 6483883 6484587 2435384 2436088 CM091766.1 scf7180002755005 100.0 True fake: scaffold gap size wrong estimation (local) 6490025 6522715 2440560 2473265 CM091766.1 scf7180002755005 98.9 True indel: indel (> 5bp) 6522864 6525349 2473331 2475814 CM091766.1 scf7180002755005 99.4 True fake: scaffold gap size wrong estimation (extensive) 6525447 6553809 2484462 2512794 CM091766.1 scf7180002755005 99.2 True relocation, scaffold gap is present, inconsistency = -10687 6554158 6653387 2523830 2623002 CM091766.1 scf7180002755005 99.12 True fake: scaffold gap size wrong estimation (extensive) 6653423 6680490 2632803 2659927 CM091766.1 scf7180002755005 98.98 True fake: scaffold gap size wrong estimation (local) 6681365 6725502 2665444 2709678 CM091766.1 scf7180002755005 98.9 True relocation, scaffold gap is present, inconsistency = -43472 6725511 6809391 2753159 2837280 CM091766.1 scf7180002755005 99.02 True indel: indel (> 5bp) 6809475 6854645 2837352 2882578 CM091766.1 scf7180002755005 99.25 True relocation, scaffold gap is present, inconsistency = -21617 6854651 6881485 2904201 2931110 CM091766.1 scf7180002755005 99.0 True relocation, scaffold gap is present, inconsistency = -17921 6880872 6932967 2948418 2999528 CM091766.1 scf7180002755005 96.93 True fake: scaffold gap size wrong estimation (local) 6933083 6949954 3001024 3017977 CM091766.1 scf7180002755005 98.81 True fake: scaffold gap size wrong estimation (local) 6950308 6966149 3018265 3034114 CM091766.1 scf7180002755005 99.42 True relocation, scaffold gap is present, inconsistency = -15677 6966144 7017301 3049786 3100615 CM091766.1 scf7180002755005 98.65 True relocation, scaffold gap is present, inconsistency = -33493 7017331 7029331 3134138 3146141 CM091766.1 scf7180002755005 99.48 True fake: scaffold gap size wrong estimation (local) 7029720 7075735 3151572 3197578 CM091766.1 scf7180002755005 99.22 True relocation, scaffold gap is present, inconsistency = -30013 7075749 7134661 3227605 3286500 CM091766.1 scf7180002755005 99.52 True relocation, scaffold gap is present, inconsistency = -46811 7135467 7138150 3334117 3336800 CM091766.1 scf7180002755005 99.44 True indel: indel (> 5bp) 7138161 7139468 3336801 3338108 CM091766.1 scf7180002755005 99.69 True indel: indel (<= 5bp) 7139470 7140800 3338109 3339439 CM091766.1 scf7180002755005 99.62 True local misassembly 7141388 7145203 3340028 3343843 CM091766.1 scf7180002755005 99.53 True indel: indel (<= 5bp) 7145204 7145937 3343848 3344581 CM091766.1 scf7180002755005 99.18 True indel: indel (<= 5bp) 7145938 7146578 3344587 3345227 CM091766.1 scf7180002755005 98.91 True indel: indel (> 5bp) 7146585 7147137 3345228 3345780 CM091766.1 scf7180002755005 98.92 True indel: indel (<= 5bp) 7147139 7148846 3345781 3347488 CM091766.1 scf7180002755005 99.65 True indel: indel (> 5bp) 7148847 7149542 3347500 3348195 CM091766.1 scf7180002755005 99.71 True indel: indel (<= 5bp) 7149993 7151503 3348649 3350159 CM091766.1 scf7180002755005 99.8 True indel: indel (> 5bp) 7151609 7257709 3350332 3455993 CM091766.1 scf7180002755005 98.75 True fake: scaffold gap size wrong estimation (local) 7257703 7259129 3459531 3460938 CM091766.1 scf7180002755005 98.21 True fake: scaffold gap size wrong estimation (local) 7259222 7275511 3461027 3476926 CM091766.1 scf7180002755005 97.0 True fake: scaffold gap size wrong estimation (extensive) 7275515 7301747 3485244 3511451 CM091766.1 scf7180002755005 99.25 True relocation, scaffold gap is present, inconsistency = -19950 7301758 7346165 3531412 3575678 CM091766.1 scf7180002755005 99.1 True relocation, scaffold gap is present, inconsistency = -30923 7346190 7363256 3606626 3623662 CM091766.1 scf7180002755005 99.26 True indel: indel (> 5bp) 7363395 7376402 3623788 3636784 CM091766.1 scf7180002755005 99.43 True CONTIG scf7180002755005 3636784 misassembled 10917882 11051423 133530 1 CM091759.1 scf7180002755006 99.54 True relocation, scaffold gap is present, inconsistency = -21939 10927168 10927652 146221 145699 CM091759.1 scf7180002755006 95.57 True fake: scaffold gap size wrong estimation (local) 10925664 10926243 147725 147146 CM091759.1 scf7180002755006 99.77 True fake: scaffold gap size wrong estimation (local) 10916655 10917631 155982 155002 CM091759.1 scf7180002755006 99.29 True fake: scaffold gap size wrong estimation (local) 10915111 10916421 157650 156340 CM091759.1 scf7180002755006 99.92 True indel: indel (> 5bp) 10912871 10914635 159905 158141 CM091759.1 scf7180002755006 99.77 True indel: indel (<= 5bp) 10911724 10912867 161049 159906 CM091759.1 scf7180002755006 100.0 True indel: indel (<= 5bp) 10910794 10911336 161978 161436 CM091759.1 scf7180002755006 99.63 True fake: scaffold gap size wrong estimation (local) 10890524 10910061 181513 162110 CM091759.1 scf7180002755006 99.01 True fake: scaffold gap size wrong estimation (local) 10871253 10890538 201488 182351 CM091759.1 scf7180002755006 98.1 True fake: scaffold gap size wrong estimation (local) 10857713 10871117 215047 201605 CM091759.1 scf7180002755006 99.82 True indel: indel (<= 5bp) 10853094 10857660 219667 215101 CM091759.1 scf7180002755006 99.91 True fake: scaffold gap size wrong estimation (local) 10844342 10852846 228392 219906 CM091759.1 scf7180002755006 99.62 True fake: scaffold gap size wrong estimation (local) 10835378 10843966 238655 230066 CM091759.1 scf7180002755006 99.83 True fake: scaffold gap size wrong estimation (local) 10833141 10835322 247460 245278 CM091759.1 scf7180002755006 99.22 True fake: scaffold gap size wrong estimation (local) 10819403 10832985 262748 249172 CM091759.1 scf7180002755006 99.78 True relocation, scaffold gap is present, inconsistency = -11017 10815449 10819523 277722 273645 CM091759.1 scf7180002755006 99.8 True fake: scaffold gap size wrong estimation (local) 10791496 10814772 301494 278199 CM091759.1 scf7180002755006 99.5 True relocation, scaffold gap is present, inconsistency = -19259 10756791 10791513 355473 320736 CM091759.1 scf7180002755006 99.54 True relocation, scaffold gap is present, inconsistency = -34457 10745075 10756794 401670 389927 CM091759.1 scf7180002755006 99.38 True fake: scaffold gap size wrong estimation (local) 10654022 10744182 491882 401733 CM091759.1 scf7180002755006 99.47 True fake: scaffold gap size wrong estimation (extensive) 10640481 10654118 513375 499737 CM091759.1 scf7180002755006 99.73 True relocation, scaffold gap is present, inconsistency = -13736 10434165 10640468 733181 527124 CM091759.1 scf7180002755006 99.25 True relocation, scaffold gap is present, inconsistency = -48877 10383489 10434203 832388 782020 CM091759.1 scf7180002755006 99.02 True relocation, scaffold gap is present, inconsistency = -44565 10326279 10383372 933397 877070 CM091759.1 scf7180002755006 98.04 True fake: not a misassembly (possible transposable element) 4850324 4853487 936561 933398 CM091768.1 scf7180002755006 100.0 True fake: not a misassembly (possible transposable element) 10312605 10326306 950403 936706 CM091759.1 scf7180002755006 99.71 True translocation, scaffold gap is present 4838392 4850105 963163 951547 CM091768.1 scf7180002755006 99.14 True translocation, scaffold gap is present 10306755 10312580 972244 966410 CM091759.1 scf7180002755006 99.3 True indel: indel (> 5bp) 10293558 10306669 985404 972293 CM091759.1 scf7180002755006 99.67 True translocation, scaffold gap is present 4837086 4837830 986860 986116 CM091768.1 scf7180002755006 100.0 True translocation, scaffold gap is present 10184436 10293540 1113392 1004259 CM091759.1 scf7180002755006 99.47 True fake: scaffold gap size wrong estimation (local) 10166095 10184076 1133256 1115282 CM091759.1 scf7180002755006 99.55 True relocation, scaffold gap is present, inconsistency = -17887 10125976 10166084 1197945 1151154 CM091759.1 scf7180002755006 98.54 True fake: scaffold gap size wrong estimation (extensive) 10099792 10125977 1233484 1207321 CM091759.1 scf7180002755006 99.63 True fake: scaffold gap size wrong estimation (local) 10033827 10099690 1299511 1233568 CM091759.1 scf7180002755006 99.62 True indel: indel (> 5bp) 9972909 10033704 1360408 1299663 CM091759.1 scf7180002755006 99.4 True relocation, scaffold gap is present, inconsistency = -16329 9954546 9972870 1395097 1376776 CM091759.1 scf7180002755006 99.6 True relocation, scaffold gap is present, inconsistency = -16861 9924365 9954547 1442195 1411957 CM091759.1 scf7180002755006 99.28 True relocation, scaffold gap is present, inconsistency = -30169 9907855 9924354 1488242 1472375 CM091759.1 scf7180002755006 96.3 True indel: stretch of mismatches 9889554 9907854 1506558 1488243 CM091759.1 scf7180002755006 99.75 True fake: scaffold gap size wrong estimation (local) 9887086 9889218 1510887 1508753 CM091759.1 scf7180002755006 99.77 True indel: indel (> 5bp) 9883356 9886922 1514609 1511044 CM091759.1 scf7180002755006 99.83 True local misassembly 9863706 9882529 1533437 1514610 CM091759.1 scf7180002755006 99.6 True fake: scaffold gap size wrong estimation (local) 9851227 9863645 1551085 1538669 CM091759.1 scf7180002755006 99.55 True CONTIG scf7180002755006 1551085 misassembled 12136284 12141933 5673 1 CM091756.1 scf7180002755007 99.77 True fake: scaffold gap size wrong estimation (local) 12075806 12136049 66246 5992 CM091756.1 scf7180002755007 99.46 True translocation, scaffold gap is present 12599810 12625562 103536 129249 CM091755.1 scf7180002755007 99.12 True translocation, scaffold gap is present 12044001 12075432 160701 129270 CM091756.1 scf7180002755007 99.46 True translocation, scaffold gap is present 12625824 12634333 183403 191914 CM091755.1 scf7180002755007 99.52 True translocation, scaffold gap is present 12032937 12043979 209407 198362 CM091756.1 scf7180002755007 99.39 True indel: indel (> 5bp) 12004702 12032863 237662 209496 CM091756.1 scf7180002755007 99.54 True translocation, scaffold gap is present 12634327 12652430 239517 257587 CM091755.1 scf7180002755007 98.9 True translocation, scaffold gap is present 11988641 12004700 310193 293983 CM091756.1 scf7180002755007 98.44 True fake: scaffold gap size wrong estimation (local) 11985690 11988455 313138 310357 CM091756.1 scf7180002755007 98.96 True indel: indel (<= 5bp) 11974209 11985448 324626 313384 CM091756.1 scf7180002755007 99.48 True fake: scaffold gap size wrong estimation (local) 11956063 11974387 347090 328705 CM091756.1 scf7180002755007 99.04 True fake: scaffold gap size wrong estimation (local) 11953663 11955099 348548 347111 CM091756.1 scf7180002755007 97.92 True fake: scaffold gap size wrong estimation (local) 11916781 11951605 383560 348738 CM091756.1 scf7180002755007 99.13 True relocation, scaffold gap is present, inconsistency = -37142 11952157 11953576 385326 383907 CM091756.1 scf7180002755007 99.08 True local misassembly 11955270 11955873 387890 387268 CM091756.1 scf7180002755007 98.01 True fake: scaffold gap size wrong estimation (local) 11743496 11916764 592709 419741 CM091756.1 scf7180002755007 99.09 True fake: scaffold gap size wrong estimation (local) 11715970 11743454 625043 597597 CM091756.1 scf7180002755007 98.93 True fake: scaffold gap size wrong estimation (local) 11657161 11715724 684461 625930 CM091756.1 scf7180002755007 99.47 True relocation, scaffold gap is present, inconsistency = -56454 11688088 11688669 710001 709407 CM091756.1 scf7180002755007 100.0 True fake: scaffold gap size wrong estimation (local) 11645856 11657100 752289 741016 CM091756.1 scf7180002755007 99.32 True fake: scaffold gap size wrong estimation (local) 11633150 11645768 766933 754389 CM091756.1 scf7180002755007 98.9 True fake: scaffold gap size wrong estimation (local) 11606108 11633129 800275 773247 CM091756.1 scf7180002755007 99.33 True fake: scaffold gap size wrong estimation (local) 11601033 11606018 805367 800382 CM091756.1 scf7180002755007 99.62 True fake: scaffold gap size wrong estimation (local) 11527246 11601049 884247 810384 CM091756.1 scf7180002755007 99.07 True fake: scaffold gap size wrong estimation (local) 11521082 11521659 890421 889844 CM091756.1 scf7180002755007 99.65 True indel: indel (<= 5bp) 11459554 11521017 952044 890481 CM091756.1 scf7180002755007 99.17 True fake: scaffold gap size wrong estimation (local) 11443686 11459554 973417 957533 CM091756.1 scf7180002755007 99.3 True relocation, scaffold gap is present, inconsistency = -15881 11430797 11443653 1002246 989331 CM091756.1 scf7180002755007 99.15 True relocation, scaffold gap is present, inconsistency = -10730 11330137 11430773 1113569 1013000 CM091756.1 scf7180002755007 99.11 True fake: scaffold gap size wrong estimation (local) 11285788 11330138 1159612 1115493 CM091756.1 scf7180002755007 98.68 True relocation, scaffold gap is present, inconsistency = -22047 11298726 11299282 1168729 1168165 CM091756.1 scf7180002755007 100.0 True fake: scaffold gap size wrong estimation (local) 11260808 11285502 1205979 1181293 CM091756.1 scf7180002755007 99.26 True relocation, scaffold gap is present, inconsistency = -10277 11252977 11260608 1224088 1216456 CM091756.1 scf7180002755007 99.28 True fake: scaffold gap size wrong estimation (extensive) 11250878 11252419 1233274 1231733 CM091756.1 scf7180002755007 99.61 True indel: indel (> 5bp) 11250144 11250830 1233961 1233275 CM091756.1 scf7180002755007 98.98 True local misassembly 11229993 11249592 1254006 1234375 CM091756.1 scf7180002755007 99.05 True indel: indel (> 5bp) 11187367 11229928 1295923 1254081 CM091756.1 scf7180002755007 97.25 True relocation, scaffold gap is present, inconsistency = -60042 11113505 11187353 1430040 1355979 CM091756.1 scf7180002755007 98.84 True relocation, scaffold gap is present, inconsistency = -17015 11112063 11113230 1448497 1447330 CM091756.1 scf7180002755007 99.49 True indel: indel (<= 5bp) 11111472 11112062 1449089 1448499 CM091756.1 scf7180002755007 99.49 True indel: indel (<= 5bp) 11110779 11111471 1449783 1449091 CM091756.1 scf7180002755007 99.42 True local misassembly 11109188 11110172 1451377 1450393 CM091756.1 scf7180002755007 99.49 True local misassembly 11107603 11108418 1452678 1451863 CM091756.1 scf7180002755007 99.39 True local misassembly 11105350 11107284 1454613 1452679 CM091756.1 scf7180002755007 99.48 True indel: indel (<= 5bp) 11104613 11105263 1455352 1454702 CM091756.1 scf7180002755007 99.54 True fake: scaffold gap size wrong estimation (extensive) 11103575 11104124 1465058 1464509 CM091756.1 scf7180002755007 99.27 True indel: indel (> 5bp) 11102728 11103480 1465882 1465130 CM091756.1 scf7180002755007 99.73 True local misassembly 11099364 11101768 1469238 1466834 CM091756.1 scf7180002755007 99.38 True indel: indel (<= 5bp) 11098228 11099363 1470378 1469243 CM091756.1 scf7180002755007 99.47 True indel: indel (> 5bp) 11097218 11098215 1471376 1470379 CM091756.1 scf7180002755007 99.4 True indel: indel (> 5bp) 11096017 11097047 1472515 1471485 CM091756.1 scf7180002755007 99.52 True indel: indel (<= 5bp) 11094288 11096016 1474245 1472517 CM091756.1 scf7180002755007 99.42 True indel: indel (<= 5bp) 11093315 11094286 1475217 1474246 CM091756.1 scf7180002755007 99.38 True indel: indel (<= 5bp) 11092381 11092980 1476153 1475554 CM091756.1 scf7180002755007 99.33 True indel: indel (<= 5bp) 11091394 11092380 1477141 1476155 CM091756.1 scf7180002755007 99.8 True local misassembly 11089989 11090759 1478546 1477776 CM091756.1 scf7180002755007 100.0 True local misassembly 11088740 11089437 1479806 1479109 CM091756.1 scf7180002755007 99.71 True indel: indel (<= 5bp) 11087415 11088738 1481130 1479807 CM091756.1 scf7180002755007 99.77 True indel: indel (<= 5bp) 11085526 11087246 1483021 1481301 CM091756.1 scf7180002755007 98.84 True local misassembly 11081981 11083841 1484882 1483022 CM091756.1 scf7180002755007 99.68 True indel: indel (<= 5bp) 11081383 11081980 1485481 1484884 CM091756.1 scf7180002755007 98.83 True local misassembly 11078838 11080045 1488071 1486864 CM091756.1 scf7180002755007 99.42 True indel: indel (<= 5bp) 11078287 11078837 1488623 1488073 CM091756.1 scf7180002755007 99.82 True indel: indel (<= 5bp) 11077315 11077898 1489597 1489014 CM091756.1 scf7180002755007 99.66 True indel: indel (<= 5bp) 11076154 11077314 1490759 1489599 CM091756.1 scf7180002755007 99.57 True indel: indel (<= 5bp) 11074020 11076149 1492892 1490763 CM091756.1 scf7180002755007 98.87 True local misassembly 11072678 11073283 1494228 1493623 CM091756.1 scf7180002755007 99.83 True indel: indel (<= 5bp) 11071479 11072307 1495432 1494604 CM091756.1 scf7180002755007 98.79 True indel: indel (<= 5bp) 11069582 11071475 1497326 1495433 CM091756.1 scf7180002755007 99.42 True local misassembly 11067639 11068476 1498609 1497772 CM091756.1 scf7180002755007 99.28 True indel: indel (<= 5bp) 11066539 11067272 1499706 1498973 CM091756.1 scf7180002755007 99.18 True indel: indel (<= 5bp) 11065417 11066538 1500829 1499708 CM091756.1 scf7180002755007 99.55 True indel: indel (<= 5bp) 11063370 11065416 1502877 1500831 CM091756.1 scf7180002755007 99.36 True indel: indel (> 5bp) 11062338 11063005 1503896 1503229 CM091756.1 scf7180002755007 98.95 True indel: indel (<= 5bp) 11061787 11062335 1504445 1503897 CM091756.1 scf7180002755007 99.82 True indel: indel (<= 5bp) 11058135 11061769 1508099 1504465 CM091756.1 scf7180002755007 99.09 True fake: scaffold gap size wrong estimation (local) 11055814 11057526 1510128 1508416 CM091756.1 scf7180002755007 98.25 True local misassembly 11052634 11055702 1513197 1510129 CM091756.1 scf7180002755007 99.32 True indel: indel (<= 5bp) 11051448 11052130 1514378 1513696 CM091756.1 scf7180002755007 100.0 True local misassembly 11049606 11050198 1516239 1515647 CM091756.1 scf7180002755007 100.0 True fake: scaffold gap size wrong estimation (local) 11041276 11049547 1526207 1517900 CM091756.1 scf7180002755007 98.7 True fake: scaffold gap size wrong estimation (local) 11036393 11037191 1530225 1529427 CM091756.1 scf7180002755007 99.25 True local misassembly 11033559 11034912 1533074 1531721 CM091756.1 scf7180002755007 99.41 True local misassembly 11031820 11032354 1534837 1534303 CM091756.1 scf7180002755007 99.63 True local misassembly 11029501 11030033 1536271 1535739 CM091756.1 scf7180002755007 99.06 True local misassembly 11027250 11028354 1538532 1537428 CM091756.1 scf7180002755007 99.46 True local misassembly 11025631 11026639 1539928 1538920 CM091756.1 scf7180002755007 99.21 True local misassembly 11021923 11022674 1543568 1542817 CM091756.1 scf7180002755007 99.73 True indel: indel (<= 5bp) 11020200 11021922 1545293 1543571 CM091756.1 scf7180002755007 99.13 True local misassembly 11017567 11019066 1547094 1545595 CM091756.1 scf7180002755007 99.27 True indel: indel (<= 5bp) 11016974 11017566 1547688 1547096 CM091756.1 scf7180002755007 99.83 True local misassembly 11014612 11015392 1549762 1548973 CM091756.1 scf7180002755007 97.59 True relocation, scaffold gap is present, inconsistency = -17904 11013184 11013898 1569094 1568380 CM091756.1 scf7180002755007 99.3 True indel: indel (<= 5bp) 11012551 11013110 1569730 1569171 CM091756.1 scf7180002755007 98.57 True indel: indel (> 5bp) 11011896 11012550 1570403 1569749 CM091756.1 scf7180002755007 99.39 True local misassembly 11009041 11009707 1573263 1572597 CM091756.1 scf7180002755007 99.4 True indel: indel (<= 5bp) 11007933 11008710 1574373 1573596 CM091756.1 scf7180002755007 99.49 True indel: indel (<= 5bp) 11007370 11007932 1574937 1574375 CM091756.1 scf7180002755007 98.4 True indel: indel (<= 5bp) 11006528 11007369 1575781 1574940 CM091756.1 scf7180002755007 99.88 True indel: indel (<= 5bp) 11005558 11006527 1576754 1575785 CM091756.1 scf7180002755007 99.59 True indel: indel (<= 5bp) 11004995 11005556 1577316 1576755 CM091756.1 scf7180002755007 99.82 True local misassembly 11002426 11003270 1579568 1578724 CM091756.1 scf7180002755007 99.29 True local misassembly 11000452 11001570 1580687 1579569 CM091756.1 scf7180002755007 99.46 True indel: indel (<= 5bp) 10999550 11000451 1581590 1580689 CM091756.1 scf7180002755007 98.78 True indel: indel (> 5bp) 10998676 10999475 1582478 1581679 CM091756.1 scf7180002755007 99.62 True indel: indel (<= 5bp) 10997716 10998675 1583440 1582481 CM091756.1 scf7180002755007 99.69 True indel: indel (> 5bp) 10996884 10997499 1584280 1583665 CM091756.1 scf7180002755007 99.51 True indel: stretch of mismatches 10995907 10996836 1585257 1584328 CM091756.1 scf7180002755007 99.35 True local misassembly 10994642 10995296 1586527 1585873 CM091756.1 scf7180002755007 99.85 True indel: indel (<= 5bp) 10993813 10994491 1587352 1586674 CM091756.1 scf7180002755007 99.26 True indel: indel (> 5bp) 10992549 10993378 1588623 1587794 CM091756.1 scf7180002755007 99.28 True indel: indel (> 5bp) 10990243 10992543 1590994 1588694 CM091756.1 scf7180002755007 99.35 True indel: indel (> 5bp) 10989626 10990212 1591619 1591033 CM091756.1 scf7180002755007 99.83 True indel: indel (<= 5bp) 10988488 10989220 1592758 1592026 CM091756.1 scf7180002755007 99.18 True indel: indel (> 5bp) 10987657 10988380 1593599 1592876 CM091756.1 scf7180002755007 99.72 True local misassembly 10986123 10987225 1595203 1594102 CM091756.1 scf7180002755007 99.18 True relocation, scaffold gap is present, inconsistency = -26887 10982868 10986121 1625347 1622092 CM091756.1 scf7180002755007 99.23 True fake: scaffold gap size wrong estimation (local) 10981983 10982524 1626248 1625707 CM091756.1 scf7180002755007 99.63 True local misassembly 10979061 10981323 1629169 1626907 CM091756.1 scf7180002755007 99.82 True indel: indel (<= 5bp) 10978238 10979060 1629994 1629172 CM091756.1 scf7180002755007 99.51 True local misassembly 10976421 10977960 1631534 1629995 CM091756.1 scf7180002755007 99.55 True indel: indel (<= 5bp) 10975492 10976420 1632465 1631537 CM091756.1 scf7180002755007 99.68 True local misassembly 10973495 10974590 1633752 1632657 CM091756.1 scf7180002755007 99.45 True indel: indel (> 5bp) 10972483 10973494 1634770 1633759 CM091756.1 scf7180002755007 99.6 True indel: indel (<= 5bp) 10971118 10972482 1636136 1634772 CM091756.1 scf7180002755007 99.56 True fake: scaffold gap size wrong estimation (local) 10966077 10970984 1642472 1637548 CM091756.1 scf7180002755007 98.8 True fake: scaffold gap size wrong estimation (local) 10941826 10966053 1667640 1643745 CM091756.1 scf7180002755007 96.56 True fake: scaffold gap size wrong estimation (local) 10935925 10941606 1673548 1667864 CM091756.1 scf7180002755007 99.02 True indel: indel (> 5bp) 10919718 10935830 1689470 1673616 CM091756.1 scf7180002755007 97.91 True indel: indel (> 5bp) 10917116 10919655 1692075 1689519 CM091756.1 scf7180002755007 98.98 True fake: scaffold gap size wrong estimation (local) 10828641 10916616 1785860 1697867 CM091756.1 scf7180002755007 99.62 True fake: scaffold gap size wrong estimation (local) 10757953 10828099 1856848 1786587 CM091756.1 scf7180002755007 99.5 True indel: indel (<= 5bp) 10730330 10757898 1884505 1856906 CM091756.1 scf7180002755007 99.4 True relocation, scaffold gap is present, inconsistency = -79621 10727530 10729972 1966928 1964484 CM091756.1 scf7180002755007 99.22 True fake: scaffold gap size wrong estimation (local) 10696251 10727319 1998229 1967136 CM091756.1 scf7180002755007 99.19 True relocation, scaffold gap is present, inconsistency = -12799 10671040 10695872 2036272 2011407 CM091756.1 scf7180002755007 99.57 True CONTIG scf7180002755007 2043404 misassembled 16588275 16702674 276 114257 CM091753.1 scf7180002755008 98.7 True indel: indel (> 5bp) 16702724 16784356 114293 195427 CM091753.1 scf7180002755008 98.67 True fake: scaffold gap size wrong estimation (local) 16784800 16818545 195978 228502 CM091753.1 scf7180002755008 95.57 True local misassembly 16821282 16848766 228503 255965 CM091753.1 scf7180002755008 99.2 True fake: not a misassembly (possible transposable element) 17290463 17291733 257236 255967 CM091751.1 scf7180002755008 99.92 True fake: not a misassembly (possible transposable element) 16848937 16875824 257257 283074 CM091753.1 scf7180002755008 95.29 True indel: indel (> 5bp) 16875945 16885329 283149 292543 CM091753.1 scf7180002755008 99.37 True fake: scaffold gap size wrong estimation (local) 16885965 16887745 292701 294476 CM091753.1 scf7180002755008 98.88 True fake: scaffold gap size wrong estimation (local) 16888407 16989225 294911 395119 CM091753.1 scf7180002755008 98.6 True indel: indel (> 5bp) 16989269 17021655 395184 426839 CM091753.1 scf7180002755008 96.81 True local misassembly 17022364 17126790 427583 535079 CM091753.1 scf7180002755008 97.99 True local misassembly 17126913 17161724 535328 571038 CM091753.1 scf7180002755008 98.37 True fake: scaffold gap size wrong estimation (local) 17161839 17188648 571147 597852 CM091753.1 scf7180002755008 98.79 True fake: scaffold gap size wrong estimation (local) 17188711 17223683 597938 632696 CM091753.1 scf7180002755008 98.98 True translocation, scaffold gap is present 5454058 5484913 632757 663502 CM091766.1 scf7180002755008 99.13 True relocation, scaffold gap is present, inconsistency = -30475 5484911 5515260 693975 723744 CM091766.1 scf7180002755008 97.29 True local misassembly 5515758 5580021 724379 788469 CM091766.1 scf7180002755008 97.53 True indel: indel (> 5bp) 5580079 5618408 788504 825992 CM091766.1 scf7180002755008 97.11 True fake: scaffold gap size wrong estimation (local) 5618812 5623809 826217 831121 CM091766.1 scf7180002755008 96.63 True indel: indel (> 5bp) 5624160 5624711 831484 832035 CM091766.1 scf7180002755008 100.0 True local misassembly 5625816 5626738 833143 834065 CM091766.1 scf7180002755008 99.35 True indel: indel (<= 5bp) 5626770 5628415 834093 835738 CM091766.1 scf7180002755008 99.88 True indel: indel (<= 5bp) 5628416 5629812 835740 837136 CM091766.1 scf7180002755008 99.57 True indel: indel (<= 5bp) 5630036 5630930 837362 838256 CM091766.1 scf7180002755008 99.55 True local misassembly 5633249 5634020 840400 841171 CM091766.1 scf7180002755008 99.48 True indel: indel (<= 5bp) 5634033 5635580 841189 842736 CM091766.1 scf7180002755008 99.74 True indel: indel (<= 5bp) 5635581 5636118 842739 843276 CM091766.1 scf7180002755008 99.44 True local misassembly 5636740 5637252 843899 844411 CM091766.1 scf7180002755008 98.44 True local misassembly 5637751 5638259 844560 845068 CM091766.1 scf7180002755008 99.61 True local misassembly 5639093 5674267 845666 880336 CM091766.1 scf7180002755008 97.81 True fake: scaffold gap size wrong estimation (local) 5675172 5697102 880465 919823 CM091766.1 scf7180002755008 96.21 True indel: indel (> 5bp) 5697153 5720066 919890 942141 CM091766.1 scf7180002755008 95.85 True CONTIG scf7180002755008 942146 misassembled 7248694 7250237 1 1544 CM091761.1 scf7180002755009 100.0 True indel: indel (> 5bp) 7250572 7251106 1870 2404 CM091761.1 scf7180002755009 95.7 True indel: stretch of mismatches 7251143 7253502 2441 4800 CM091761.1 scf7180002755009 100.0 True fake: scaffold gap size wrong estimation (local) 7253788 7255174 5130 6516 CM091761.1 scf7180002755009 99.86 True fake: scaffold gap size wrong estimation (local) 7255883 7257577 7243 8937 CM091761.1 scf7180002755009 99.82 True local misassembly 7258823 7259328 9418 9923 CM091761.1 scf7180002755009 96.05 True fake: scaffold gap size wrong estimation (local) 7259554 7261394 10160 12000 CM091761.1 scf7180002755009 98.59 True indel: indel (<= 5bp) 7261397 7261973 12001 12577 CM091761.1 scf7180002755009 96.53 True fake: scaffold gap size wrong estimation (local) 7265182 7265870 15204 15892 CM091761.1 scf7180002755009 100.0 True fake: scaffold gap size wrong estimation (local) 7267802 7269356 17525 19079 CM091761.1 scf7180002755009 99.29 True fake: scaffold gap size wrong estimation (local) 7269451 7275445 19163 27562 CM091761.1 scf7180002755009 98.01 True fake: scaffold gap size wrong estimation (local) 7275536 7276799 27663 28932 CM091761.1 scf7180002755009 99.21 True fake: scaffold gap size wrong estimation (local) 7276929 7278129 29039 30239 CM091761.1 scf7180002755009 99.92 True fake: scaffold gap size wrong estimation (local) 7278678 7280628 30835 32785 CM091761.1 scf7180002755009 99.33 True indel: stretch of mismatches 7280745 7281601 32902 33758 CM091761.1 scf7180002755009 99.88 True indel: stretch of mismatches 7281705 7283502 33862 35659 CM091761.1 scf7180002755009 96.89 True local misassembly 7284965 7286169 35660 36864 CM091761.1 scf7180002755009 98.26 True fake: scaffold gap size wrong estimation (local) 7287328 7288413 38035 39120 CM091761.1 scf7180002755009 99.82 True fake: scaffold gap size wrong estimation (local) 7288965 7291504 39766 42335 CM091761.1 scf7180002755009 98.61 True fake: scaffold gap size wrong estimation (local) 7293034 7314589 43186 64565 CM091761.1 scf7180002755009 96.02 True fake: scaffold gap size wrong estimation (local) 7315319 7321646 65324 71700 CM091761.1 scf7180002755009 98.43 True fake: scaffold gap size wrong estimation (local) 7323945 7367821 74039 117544 CM091761.1 scf7180002755009 98.82 True indel: indel (> 5bp) 7367897 7369939 117613 119656 CM091761.1 scf7180002755009 99.51 True fake: scaffold gap size wrong estimation (local) 7371882 7406875 123827 158827 CM091761.1 scf7180002755009 99.67 True relocation, scaffold gap is present, inconsistency = -35578 7381095 7381612 168625 169142 CM091761.1 scf7180002755009 100.0 True fake: scaffold gap size wrong estimation (local) 7406881 7411173 194452 198740 CM091761.1 scf7180002755009 99.65 True indel: indel (> 5bp) 7411190 7617853 198764 404876 CM091761.1 scf7180002755009 99.29 True translocation, scaffold gap is present 115873 137958 404897 426930 CM091766.1 scf7180002755009 99.54 True translocation, scaffold gap is present 7617899 7628865 426951 437566 CM091761.1 scf7180002755009 96.36 True translocation, scaffold gap is present 138393 163446 437594 462643 CM091766.1 scf7180002755009 99.86 True translocation, scaffold gap is present 7628878 7661647 462664 495548 CM091761.1 scf7180002755009 99.2 True translocation, scaffold gap is present 163452 164501 495569 496618 CM091766.1 scf7180002755009 100.0 True indel: indel (<= 5bp) 164502 167986 496620 500104 CM091766.1 scf7180002755009 100.0 True indel: indel (<= 5bp) 167987 174090 500106 506209 CM091766.1 scf7180002755009 100.0 True indel: indel (<= 5bp) 174506 175162 506629 507285 CM091766.1 scf7180002755009 100.0 True indel: indel (<= 5bp) 175164 177469 507286 509591 CM091766.1 scf7180002755009 99.91 True indel: stretch of mismatches 177721 182873 509843 514995 CM091766.1 scf7180002755009 99.9 True indel: indel (<= 5bp) 182874 184293 514997 516416 CM091766.1 scf7180002755009 100.0 True indel: indel (<= 5bp) 184295 185037 516417 517159 CM091766.1 scf7180002755009 100.0 True indel: indel (<= 5bp) 185039 188281 517160 520402 CM091766.1 scf7180002755009 100.0 True relocation, scaffold gap is present, inconsistency = -17773 188282 193721 538176 543615 CM091766.1 scf7180002755009 99.94 True indel: indel (<= 5bp) 193723 196309 543616 546202 CM091766.1 scf7180002755009 100.0 True indel: indel (<= 5bp) 196311 197975 546203 547867 CM091766.1 scf7180002755009 100.0 True indel: indel (<= 5bp) 197976 198503 547869 548396 CM091766.1 scf7180002755009 100.0 True indel: indel (<= 5bp) 198505 199501 548397 549393 CM091766.1 scf7180002755009 100.0 True indel: indel (<= 5bp) 199502 200225 549395 550118 CM091766.1 scf7180002755009 100.0 True indel: indel (<= 5bp) 200417 201353 550312 551248 CM091766.1 scf7180002755009 99.89 True indel: indel (<= 5bp) 201571 203020 551464 552913 CM091766.1 scf7180002755009 99.72 True relocation, scaffold gap is present, inconsistency = -16166 203334 206564 569393 572623 CM091766.1 scf7180002755009 99.94 True indel: indel (<= 5bp) 206565 207556 572625 573616 CM091766.1 scf7180002755009 100.0 True indel: indel (<= 5bp) 207558 208290 573617 574349 CM091766.1 scf7180002755009 100.0 True indel: indel (<= 5bp) 208291 209940 574351 576000 CM091766.1 scf7180002755009 99.94 True indel: indel (<= 5bp) 209942 214836 576001 580895 CM091766.1 scf7180002755009 99.96 True indel: indel (<= 5bp) 214840 218758 580896 584814 CM091766.1 scf7180002755009 99.95 True indel: indel (<= 5bp) 218759 219398 584816 585455 CM091766.1 scf7180002755009 100.0 True indel: indel (<= 5bp) 219400 220321 585456 586377 CM091766.1 scf7180002755009 100.0 True indel: indel (<= 5bp) 220322 222248 586379 588305 CM091766.1 scf7180002755009 100.0 True indel: indel (<= 5bp) 222251 224534 588306 590589 CM091766.1 scf7180002755009 99.91 True indel: indel (<= 5bp) 224536 228205 590590 594259 CM091766.1 scf7180002755009 100.0 True indel: indel (<= 5bp) 228633 232857 594690 598914 CM091766.1 scf7180002755009 99.88 True indel: indel (<= 5bp) 232858 235540 598916 601598 CM091766.1 scf7180002755009 99.93 True translocation, scaffold gap is present 7695403 7766642 601622 673281 CM091761.1 scf7180002755009 99.24 True fake: scaffold gap size wrong estimation (local) 7766657 7770809 679406 683561 CM091761.1 scf7180002755009 99.69 True fake: scaffold gap size wrong estimation (local) 7770899 7811733 687069 727919 CM091761.1 scf7180002755009 99.61 True indel: indel (> 5bp) 7811742 7956675 727921 871560 CM091761.1 scf7180002755009 98.6 True indel: indel (<= 5bp) 7956739 8099475 871626 1014044 CM091761.1 scf7180002755009 99.5 True fake: scaffold gap size wrong estimation (local) 8099607 8178054 1014163 1091968 CM091761.1 scf7180002755009 98.67 True relocation, scaffold gap is present, inconsistency = -17749 8178051 8374329 1109714 1306031 CM091761.1 scf7180002755009 99.2 True fake: scaffold gap size wrong estimation (local) 8374458 8470236 1306154 1402249 CM091761.1 scf7180002755009 98.96 True local misassembly 8470385 8554371 1402273 1486090 CM091761.1 scf7180002755009 99.16 True fake: scaffold gap size wrong estimation (local) 8554539 8567237 1486227 1498928 CM091761.1 scf7180002755009 99.69 True local misassembly 8568025 8568700 1499728 1500403 CM091761.1 scf7180002755009 99.56 True CONTIG scf7180002755009 1500403 misassembled 8841188 8885031 2681 46674 CM091766.1 scf7180002755010 99.45 True fake: scaffold gap size wrong estimation (local) 8885820 8904049 47125 65399 CM091766.1 scf7180002755010 99.7 True fake: scaffold gap size wrong estimation (local) 8904050 8914541 71261 81752 CM091766.1 scf7180002755010 99.96 True fake: scaffold gap size wrong estimation (extensive) 8914523 8926460 91527 103464 CM091766.1 scf7180002755010 99.95 True relocation, scaffold gap is present, inconsistency = -11961 8926448 8935982 115413 124956 CM091766.1 scf7180002755010 99.88 True fake: scaffold gap size wrong estimation (extensive) 8935991 8978727 133044 175661 CM091766.1 scf7180002755010 99.62 True relocation, scaffold gap is present, inconsistency = -28558 8984022 9030013 209514 255502 CM091766.1 scf7180002755010 99.78 True fake: scaffold gap size wrong estimation (local) 9030029 9050957 260259 281200 CM091766.1 scf7180002755010 99.78 True fake: scaffold gap size wrong estimation (local) 9050979 9066512 286118 301651 CM091766.1 scf7180002755010 99.93 True relocation, scaffold gap is present, inconsistency = -14346 9066765 9113485 316250 362966 CM091766.1 scf7180002755010 99.97 True relocation, scaffold gap is present, inconsistency = -36329 9113560 9221078 399370 506896 CM091766.1 scf7180002755010 99.87 True relocation, scaffold gap is present, inconsistency = -100970 9164905 9165424 551693 552218 CM091766.1 scf7180002755010 100.0 True fake: scaffold gap size wrong estimation (local) 9186439 9187304 573240 574105 CM091766.1 scf7180002755010 100.0 True fake: scaffold gap size wrong estimation (local) 9216543 9217043 603411 603911 CM091766.1 scf7180002755010 100.0 True fake: scaffold gap size wrong estimation (local) 9221128 9229644 607501 616027 CM091766.1 scf7180002755010 99.65 True fake: scaffold gap size wrong estimation (extensive) 9229640 9270944 624466 665732 CM091766.1 scf7180002755010 99.65 True relocation, scaffold gap is present, inconsistency = -28256 9271552 9280558 694596 703639 CM091766.1 scf7180002755010 99.25 True indel: indel (<= 5bp) 9280584 9340684 703670 763784 CM091766.1 scf7180002755010 99.7 True fake: scaffold gap size wrong estimation (extensive) 9340995 9362759 771240 793015 CM091766.1 scf7180002755010 99.45 True fake: scaffold gap size wrong estimation (local) 9363133 9382049 797107 816009 CM091766.1 scf7180002755010 99.6 True relocation, scaffold gap is present, inconsistency = -16140 9382171 9396193 832271 846279 CM091766.1 scf7180002755010 99.65 True relocation, scaffold gap is present, inconsistency = -13683 9396193 9588134 859962 1051903 CM091766.1 scf7180002755010 99.48 True fake: scaffold gap size wrong estimation (local) 9588347 9619164 1054217 1084963 CM091766.1 scf7180002755010 99.16 True relocation, scaffold gap is present, inconsistency = -30727 9619169 9681868 1115695 1178375 CM091766.1 scf7180002755010 99.42 True relocation, scaffold gap is present, inconsistency = -42903 9682285 9687816 1221695 1227234 CM091766.1 scf7180002755010 99.22 True fake: scaffold gap size wrong estimation (local) 9687366 9708694 1232268 1253023 CM091766.1 scf7180002755010 96.9 True CONTIG scf7180002755010 1271956 misassembled 10270808 10310636 39110 1 CM091754.1 scf7180002755011 97.35 True fake: scaffold gap size wrong estimation (local) 10014988 10270799 299142 42953 CM091754.1 scf7180002755011 99.47 True fake: scaffold gap size wrong estimation (local) 10000440 10014304 313718 299875 CM091754.1 scf7180002755011 99.44 True relocation, scaffold gap is present, inconsistency = -14454 10014305 10014873 314335 313739 CM091754.1 scf7180002755011 98.44 True fake: scaffold gap size wrong estimation (local) 9986559 10000413 340877 326970 CM091754.1 scf7180002755011 98.49 True indel: indel (> 5bp) 9889259 9986462 438174 340994 CM091754.1 scf7180002755011 99.41 True indel: indel (> 5bp) 9823277 9889171 504170 438246 CM091754.1 scf7180002755011 99.19 True indel: indel (> 5bp) 9750405 9823069 577105 504419 CM091754.1 scf7180002755011 99.3 True relocation, scaffold gap is present, inconsistency = -12764 9712397 9750401 627882 589873 CM091754.1 scf7180002755011 99.08 True fake: scaffold gap size wrong estimation (extensive) 9580649 9712384 768486 636524 CM091754.1 scf7180002755011 99.12 True indel: indel (> 5bp) 9577833 9580556 771364 768640 CM091754.1 scf7180002755011 99.78 True fake: scaffold gap size wrong estimation (local) 9407800 9576874 940355 771568 CM091754.1 scf7180002755011 99.09 True indel: indel (> 5bp) 9385722 9407619 962328 940479 CM091754.1 scf7180002755011 99.22 True indel: indel (> 5bp) 9246180 9385659 1102164 962372 CM091754.1 scf7180002755011 99.24 True fake: scaffold gap size wrong estimation (local) 9136378 9245927 1212703 1103270 CM091754.1 scf7180002755011 99.3 True CONTIG scf7180002755011 1212703 misassembled 1139140 1276178 136881 6 CM091767.1 scf7180002755012 99.0 True indel: indel (> 5bp) 1138489 1139089 137544 136944 CM091767.1 scf7180002755012 100.0 True indel: indel (<= 5bp) 1137813 1138487 138219 137545 CM091767.1 scf7180002755012 99.56 True indel: indel (<= 5bp) 1132995 1137812 143038 138221 CM091767.1 scf7180002755012 99.61 True indel: indel (<= 5bp) 1129858 1132994 146176 143040 CM091767.1 scf7180002755012 99.68 True indel: indel (<= 5bp) 1126654 1129569 149381 146466 CM091767.1 scf7180002755012 99.73 True indel: indel (<= 5bp) 1124556 1126653 151480 149383 CM091767.1 scf7180002755012 99.57 True indel: indel (<= 5bp) 1123452 1124555 152585 151482 CM091767.1 scf7180002755012 99.64 True local misassembly 1114306 1117875 156425 152856 CM091767.1 scf7180002755012 99.72 True local misassembly 1113072 1113751 157658 156979 CM091767.1 scf7180002755012 100.0 True indel: indel (> 5bp) 1112567 1113071 158170 157666 CM091767.1 scf7180002755012 99.21 True indel: indel (<= 5bp) 1109104 1112219 161635 158520 CM091767.1 scf7180002755012 99.78 True indel: indel (<= 5bp) 1106568 1109103 164172 161637 CM091767.1 scf7180002755012 99.65 True indel: stretch of mismatches 1105551 1106524 165189 164216 CM091767.1 scf7180002755012 99.69 True indel: indel (> 5bp) 1105007 1105534 165717 165190 CM091767.1 scf7180002755012 99.62 True indel: indel (<= 5bp) 1103200 1104595 167529 166134 CM091767.1 scf7180002755012 100.0 True indel: indel (> 5bp) 1101598 1102710 169139 168027 CM091767.1 scf7180002755012 99.82 True indel: indel (<= 5bp) 1100290 1101433 170444 169301 CM091767.1 scf7180002755012 99.91 True relocation, scaffold gap is present, inconsistency = -59477 1048995 1100099 281232 230112 CM091767.1 scf7180002755012 99.29 True indel: indel (> 5bp) 961762 1048919 368414 281294 CM091767.1 scf7180002755012 99.36 True fake: scaffold gap size wrong estimation (local) 952052 961754 384779 375075 CM091767.1 scf7180002755012 99.74 True indel: indel (> 5bp) 919949 952007 416851 384833 CM091767.1 scf7180002755012 99.35 True relocation, scaffold gap is present, inconsistency = -32562 892316 919952 477074 449410 CM091767.1 scf7180002755012 99.32 True relocation, scaffold gap is present, inconsistency = -27697 831644 892316 565498 504771 CM091767.1 scf7180002755012 99.47 True relocation, scaffold gap is present, inconsistency = -26070 782048 832075 641003 591137 CM091767.1 scf7180002755012 98.98 True indel: indel (<= 5bp) 775984 781992 647061 641063 CM091767.1 scf7180002755012 99.24 True relocation, scaffold gap is present, inconsistency = -55958 677468 775984 801525 703019 CM091767.1 scf7180002755012 99.25 True inversion 664116 666809 801526 804219 CM091767.1 scf7180002755012 99.27 True inversion 636423 661455 828917 804220 CM091767.1 scf7180002755012 97.92 True fake: scaffold gap size wrong estimation (local) 572703 636426 893402 829693 CM091767.1 scf7180002755012 99.45 True relocation, scaffold gap is present, inconsistency = -59625 566504 572454 959220 953276 CM091767.1 scf7180002755012 99.19 True indel: indel (> 5bp) 526495 566344 999328 959386 CM091767.1 scf7180002755012 99.42 True fake: scaffold gap size wrong estimation (local) 489745 525849 1038114 1001988 CM091767.1 scf7180002755012 99.36 True relocation, scaffold gap is present, inconsistency = -30915 486683 489704 1072038 1069070 CM091767.1 scf7180002755012 97.85 True fake: scaffold gap size wrong estimation (local) 368032 486574 1190679 1072131 CM091767.1 scf7180002755012 99.46 True fake: scaffold gap size wrong estimation (extensive) 366037 367448 1201788 1200376 CM091767.1 scf7180002755012 99.36 True fake: scaffold gap size wrong estimation (local) 362296 365611 1205567 1202213 CM091767.1 scf7180002755012 99.16 True local misassembly 359472 362248 1208484 1205707 CM091767.1 scf7180002755012 99.64 True fake: scaffold gap size wrong estimation (local) 291554 359430 1276675 1209067 CM091767.1 scf7180002755012 99.03 True fake: scaffold gap size wrong estimation (local) 223155 291543 1346723 1278581 CM091767.1 scf7180002755012 99.15 True relocation, scaffold gap is present, inconsistency = -35651 198158 223128 1407449 1382401 CM091767.1 scf7180002755012 99.67 True fake: scaffold gap size wrong estimation (local) 178130 197640 1429707 1410227 CM091767.1 scf7180002755012 99.55 True relocation, scaffold gap is present, inconsistency = -13681 138651 178006 1482881 1443512 CM091767.1 scf7180002755012 99.76 True fake: scaffold gap size wrong estimation (local) 84595 138455 1536522 1483050 CM091767.1 scf7180002755012 98.39 True fake: scaffold gap size wrong estimation (local) 65970 84542 1557154 1538622 CM091767.1 scf7180002755012 99.29 True fake: scaffold gap size wrong estimation (local) 52577 65048 1570822 1558360 CM091767.1 scf7180002755012 99.75 True fake: scaffold gap size wrong estimation (local) 49882 52428 1573520 1570974 CM091767.1 scf7180002755012 99.96 True indel: indel (> 5bp) 48704 49850 1574667 1573521 CM091767.1 scf7180002755012 99.65 True indel: indel (> 5bp) 47783 48697 1575582 1574668 CM091767.1 scf7180002755012 100.0 True indel: indel (> 5bp) 46453 47531 1576923 1575845 CM091767.1 scf7180002755012 100.0 True fake: scaffold gap size wrong estimation (local) 45162 45844 1578238 1577556 CM091767.1 scf7180002755012 96.63 True local misassembly 43995 45030 1579274 1578239 CM091767.1 scf7180002755012 100.0 True fake: scaffold gap size wrong estimation (local) 43313 43994 1579998 1579317 CM091767.1 scf7180002755012 100.0 True fake: scaffold gap size wrong estimation (local) 41844 43286 1581587 1580145 CM091767.1 scf7180002755012 99.58 True indel: indel (> 5bp) 39537 41837 1583888 1581588 CM091767.1 scf7180002755012 99.91 True indel: indel (<= 5bp) 38718 39449 1584702 1583971 CM091767.1 scf7180002755012 99.86 True local misassembly 34107 37755 1588362 1584714 CM091767.1 scf7180002755012 99.4 True indel: indel (<= 5bp) 33369 34106 1589101 1588364 CM091767.1 scf7180002755012 100.0 True indel: indel (<= 5bp) 32473 33368 1590001 1589106 CM091767.1 scf7180002755012 100.0 True fake: scaffold gap size wrong estimation (local) 26930 32423 1597463 1591979 CM091767.1 scf7180002755012 99.8 True CONTIG scf7180002755012 1597463 misassembled 1317957 1359806 1 41092 CM091767.1 scf7180002755013 97.45 True indel: indel (> 5bp) 1359879 1377972 41198 59355 CM091767.1 scf7180002755013 99.4 True indel: indel (<= 5bp) 1378032 1441682 59420 123013 CM091767.1 scf7180002755013 98.92 True fake: scaffold gap size wrong estimation (local) 1441882 1459786 123181 141050 CM091767.1 scf7180002755013 98.86 True fake: scaffold gap size wrong estimation (local) 1460460 1597869 141511 278369 CM091767.1 scf7180002755013 98.73 True fake: scaffold gap size wrong estimation (local) 1598195 1599847 279647 281300 CM091767.1 scf7180002755013 99.64 True fake: scaffold gap size wrong estimation (local) 1599840 1622283 282886 305199 CM091767.1 scf7180002755013 98.82 True fake: scaffold gap size wrong estimation (extensive) 1622491 1626009 313470 316902 CM091767.1 scf7180002755013 97.27 True fake: scaffold gap size wrong estimation (local) 1626249 1683958 320185 378213 CM091767.1 scf7180002755013 99.08 True relocation, scaffold gap is present, inconsistency = -46910 1684207 1698391 425372 439566 CM091767.1 scf7180002755013 99.39 True relocation, scaffold gap is present, inconsistency = -13998 1698399 1721413 453572 476602 CM091767.1 scf7180002755013 99.32 True indel: indel (<= 5bp) 1721579 1752335 476767 507472 CM091767.1 scf7180002755013 99.46 True fake: scaffold gap size wrong estimation (local) 1752455 1786184 507589 541237 CM091767.1 scf7180002755013 99.12 True indel: indel (<= 5bp) 1786289 1799307 541347 554380 CM091767.1 scf7180002755013 99.51 True relocation, scaffold gap is present, inconsistency = -24064 1799664 1831352 578801 610504 CM091767.1 scf7180002755013 99.49 True translocation, scaffold gap is present 11520339 11549454 655904 627200 CM091761.1 scf7180002755013 98.27 True translocation, scaffold gap is present 1831355 1845610 669823 684912 CM091767.1 scf7180002755013 98.98 True translocation 11487141 11520326 718132 684913 CM091761.1 scf7180002755013 99.61 True fake: scaffold gap size wrong estimation (local) 11485017 11486399 720607 719196 CM091761.1 scf7180002755013 99.15 True fake: scaffold gap size wrong estimation (local) 11473462 11484913 732161 720692 CM091761.1 scf7180002755013 98.95 True fake: scaffold gap size wrong estimation (local) 11463470 11473455 747192 737192 CM091761.1 scf7180002755013 99.58 True translocation, scaffold gap is present 16240713 16241352 747213 747852 CM091755.1 scf7180002755013 99.84 True indel: indel (<= 5bp) 16241537 16243777 748036 750271 CM091755.1 scf7180002755013 99.6 True fake: scaffold gap size wrong estimation (local) 16243838 16249473 750376 756316 CM091755.1 scf7180002755013 97.13 True fake: scaffold gap size wrong estimation (local) 16249579 16263540 756418 770450 CM091755.1 scf7180002755013 99.4 True indel: indel (> 5bp) 16263593 16292095 770512 799035 CM091755.1 scf7180002755013 99.07 True fake: scaffold gap size wrong estimation (local) 16292199 16331603 802479 841932 CM091755.1 scf7180002755013 99.56 True relocation, scaffold gap is present, inconsistency = -21353 16332115 16354091 863797 885738 CM091755.1 scf7180002755013 99.6 True relocation, scaffold gap is present, inconsistency = -21568 16354081 16522321 907296 1075646 CM091755.1 scf7180002755013 99.57 True relocation, scaffold gap is present, inconsistency = -38690 16522339 16542791 1114354 1134781 CM091755.1 scf7180002755013 99.64 True fake: scaffold gap size wrong estimation (local) 16543001 16587551 1140800 1185310 CM091755.1 scf7180002755013 99.63 True relocation, scaffold gap is present, inconsistency = -27443 16587625 16752923 1212827 1378023 CM091755.1 scf7180002755013 99.58 True relocation, scaffold gap is present, inconsistency = -13445 16753140 16760940 1391685 1399507 CM091755.1 scf7180002755013 99.73 True fake: scaffold gap size wrong estimation (local) 16761108 16805358 1399643 1443904 CM091755.1 scf7180002755013 99.48 True fake: scaffold gap size wrong estimation (extensive) 16805422 16808551 1452337 1455469 CM091755.1 scf7180002755013 99.71 True fake: scaffold gap size wrong estimation (local) 16808908 16846202 1458031 1495106 CM091755.1 scf7180002755013 98.95 True fake: scaffold gap size wrong estimation (local) 16846474 16894496 1496019 1544079 CM091755.1 scf7180002755013 99.68 True CONTIG scf7180002755013 1544141 misassembled 5035301 5037918 1 2629 CM091753.1 scf7180002755014 98.67 True local misassembly 5038279 5058570 2697 22985 CM091753.1 scf7180002755014 98.82 True fake: scaffold gap size wrong estimation (local) 5059461 5060836 25897 27272 CM091753.1 scf7180002755014 99.56 True indel: indel (<= 5bp) 5061081 5062186 27514 28619 CM091753.1 scf7180002755014 99.46 True indel: indel (<= 5bp) 5062187 5064282 28622 30717 CM091753.1 scf7180002755014 99.67 True local misassembly 5065029 5065939 30718 31628 CM091753.1 scf7180002755014 97.37 True indel: indel (<= 5bp) 5066116 5066871 31810 32565 CM091753.1 scf7180002755014 100.0 True indel: indel (<= 5bp) 5066997 5067690 32693 33386 CM091753.1 scf7180002755014 99.86 True indel: indel (<= 5bp) 5068131 5068826 33826 34521 CM091753.1 scf7180002755014 99.86 True indel: indel (<= 5bp) 5068827 5069630 34523 35326 CM091753.1 scf7180002755014 99.75 True indel: indel (<= 5bp) 5069632 5070855 35327 36550 CM091753.1 scf7180002755014 99.51 True indel: indel (<= 5bp) 5070856 5072508 36552 38204 CM091753.1 scf7180002755014 99.33 True indel: indel (> 5bp) 5073018 5073812 38664 39458 CM091753.1 scf7180002755014 99.5 True fake: scaffold gap size wrong estimation (local) 5075675 5123627 41314 88823 CM091753.1 scf7180002755014 98.08 True indel: indel (> 5bp) 5123718 5146089 88944 111399 CM091753.1 scf7180002755014 99.61 True fake: scaffold gap size wrong estimation (local) 5146107 5150863 113304 118061 CM091753.1 scf7180002755014 99.94 True fake: scaffold gap size wrong estimation (local) 5151188 5209918 118304 177010 CM091753.1 scf7180002755014 99.64 True relocation, scaffold gap is present, inconsistency = -28306 5209971 5276315 205369 271680 CM091753.1 scf7180002755014 99.26 True relocation, scaffold gap is present, inconsistency = -53170 5268955 5269990 317490 318583 CM091753.1 scf7180002755014 98.81 True fake: scaffold gap size wrong estimation (local) 5276330 5287798 324359 335843 CM091753.1 scf7180002755014 98.98 True fake: scaffold gap size wrong estimation (extensive) 5287796 5290450 345441 348095 CM091753.1 scf7180002755014 99.1 True indel: indel (<= 5bp) 5290452 5292290 348096 349934 CM091753.1 scf7180002755014 99.67 True indel: indel (<= 5bp) 5292294 5293182 349935 350823 CM091753.1 scf7180002755014 99.66 True fake: scaffold gap size wrong estimation (local) 5293286 5358685 355407 420859 CM091753.1 scf7180002755014 99.36 True relocation, scaffold gap is present, inconsistency = -64474 5349756 5350292 476404 476950 CM091753.1 scf7180002755014 100.0 True fake: scaffold gap size wrong estimation (local) 5359449 5401228 486025 527799 CM091753.1 scf7180002755014 99.29 True relocation, scaffold gap is present, inconsistency = -26098 5401607 5417433 554276 570077 CM091753.1 scf7180002755014 98.62 True relocation, scaffold gap is present, inconsistency = -15120 5417379 5462352 585143 630157 CM091753.1 scf7180002755014 99.39 True translocation, scaffold gap is present 8203351 8205461 662647 664763 CM091767.1 scf7180002755014 99.67 True fake: not a misassembly (possible transposable element) 5462376 5465783 667031 670443 CM091753.1 scf7180002755014 99.65 True fake: not a misassembly (possible transposable element) 8205788 8214074 670496 678782 CM091767.1 scf7180002755014 99.99 True translocation, scaffold gap is present 5467121 5489842 681382 704101 CM091753.1 scf7180002755014 99.13 True relocation, scaffold gap is present, inconsistency = -21487 5489879 5510697 725625 746417 CM091753.1 scf7180002755014 99.19 True fake: scaffold gap size wrong estimation (local) 5511147 5527440 746861 763172 CM091753.1 scf7180002755014 99.19 True relocation, scaffold gap is present, inconsistency = -16504 5527438 5567321 779674 819546 CM091753.1 scf7180002755014 99.38 True indel: indel (> 5bp) 5567557 5616188 819754 868303 CM091753.1 scf7180002755014 98.79 True relocation, scaffold gap is present, inconsistency = -22162 5616209 5626041 890486 900307 CM091753.1 scf7180002755014 99.33 True fake: scaffold gap size wrong estimation (local) 5626149 5685371 900401 959628 CM091753.1 scf7180002755014 99.15 True indel: indel (> 5bp) 5685465 5746997 959678 1021195 CM091753.1 scf7180002755014 99.35 True relocation, scaffold gap is present, inconsistency = -44964 5747099 5748885 1066261 1068047 CM091753.1 scf7180002755014 98.82 True indel: indel (<= 5bp) 5748886 5750093 1068049 1069256 CM091753.1 scf7180002755014 99.5 True indel: indel (<= 5bp) 5750094 5751784 1069258 1070948 CM091753.1 scf7180002755014 99.82 True indel: indel (<= 5bp) 5751785 5753873 1070951 1073039 CM091753.1 scf7180002755014 99.76 True indel: indel (> 5bp) 5753874 5756217 1073046 1075389 CM091753.1 scf7180002755014 99.7 True indel: indel (> 5bp) 5756658 5757334 1075844 1076520 CM091753.1 scf7180002755014 99.85 True indel: indel (<= 5bp) 5757335 5760294 1076524 1079483 CM091753.1 scf7180002755014 99.9 True indel: indel (<= 5bp) 5760296 5761897 1079484 1081085 CM091753.1 scf7180002755014 99.5 True indel: indel (<= 5bp) 5761899 5762529 1081086 1081716 CM091753.1 scf7180002755014 99.84 True translocation, scaffold gap is present 8572581 8590461 1087924 1105808 CM091760.1 scf7180002755014 99.2 True translocation, scaffold gap is present 5762553 5776010 1113548 1127007 CM091753.1 scf7180002755014 99.52 True translocation, scaffold gap is present 8590524 8608924 1136579 1154975 CM091760.1 scf7180002755014 99.58 True translocation, scaffold gap is present 5775991 5822535 1158616 1205198 CM091753.1 scf7180002755014 99.32 True translocation, scaffold gap is present 8608940 8649338 1219822 1260234 CM091760.1 scf7180002755014 99.34 True translocation, scaffold gap is present 5822499 5854901 1292045 1324452 CM091753.1 scf7180002755014 99.44 True translocation, scaffold gap is present 8649335 8673577 1333138 1358394 CM091760.1 scf7180002755014 98.61 True translocation, scaffold gap is present 5854997 5870970 1368284 1384273 CM091753.1 scf7180002755014 99.41 True relocation, scaffold gap is present, inconsistency = -15721 5870968 5895246 1399992 1424261 CM091753.1 scf7180002755014 99.56 True fake: scaffold gap size wrong estimation (local) 5895657 5923980 1428371 1456725 CM091753.1 scf7180002755014 99.33 True relocation, scaffold gap is present, inconsistency = -11705 5924045 5941533 1468495 1486014 CM091753.1 scf7180002755014 99.24 True indel: indel (> 5bp) 5941558 5945315 1486049 1489805 CM091753.1 scf7180002755014 99.44 True translocation, scaffold gap is present 4336772 4341115 1494166 1489826 CM091766.1 scf7180002755014 99.33 True fake: scaffold gap size wrong estimation (local) 4327736 4336543 1505344 1496539 CM091766.1 scf7180002755014 99.16 True translocation, scaffold gap is present 5945352 5966838 1505365 1526880 CM091753.1 scf7180002755014 99.33 True translocation, scaffold gap is present 4322896 4327751 1538567 1533716 CM091766.1 scf7180002755014 99.28 True fake: scaffold gap size wrong estimation (local) 4314818 4323077 1549644 1541387 CM091766.1 scf7180002755014 99.54 True fake: scaffold gap size wrong estimation (local) 4311627 4314207 1556066 1553493 CM091766.1 scf7180002755014 99.5 True translocation, scaffold gap is present 5966815 5972833 1556087 1562105 CM091753.1 scf7180002755014 99.75 True translocation, scaffold gap is present 4301650 4311237 1573950 1564368 CM091766.1 scf7180002755014 99.55 True translocation, scaffold gap is present 5973060 5987127 1577379 1591474 CM091753.1 scf7180002755014 99.3 True translocation, scaffold gap is present 4277391 4301686 1619601 1595305 CM091766.1 scf7180002755014 99.01 True local misassembly 4268166 4277310 1629023 1619820 CM091766.1 scf7180002755014 98.9 True translocation, scaffold gap is present 5987161 5990850 1637407 1641103 CM091753.1 scf7180002755014 99.32 True fake: scaffold gap size wrong estimation (local) 5990876 6002311 1644580 1656051 CM091753.1 scf7180002755014 99.25 True indel: indel (> 5bp) 6002380 6019006 1656112 1672730 CM091753.1 scf7180002755014 99.41 True translocation, scaffold gap is present 4241269 4268287 1705636 1678601 CM091766.1 scf7180002755014 99.44 True relocation, scaffold gap is present, inconsistency = -22308 4218150 4240657 1751089 1728556 CM091766.1 scf7180002755014 99.41 True relocation, scaffold gap is present, inconsistency = -22265 4197798 4218165 1793692 1773339 CM091766.1 scf7180002755014 99.51 True fake: scaffold gap size wrong estimation (local) 4047947 4197780 1946287 1796379 CM091766.1 scf7180002755014 99.38 True indel: indel (> 5bp) 3844224 4047548 2149913 1946679 CM091766.1 scf7180002755014 99.37 True relocation, scaffold gap is present, inconsistency = -18701 3777939 3844005 2234810 2168833 CM091766.1 scf7180002755014 99.29 True local misassembly 3766752 3772965 2241024 2234811 CM091766.1 scf7180002755014 99.57 True indel: indel (> 5bp) 3739624 3766685 2268111 2241106 CM091766.1 scf7180002755014 99.36 True indel: indel (> 5bp) 3693359 3739509 2314342 2268189 CM091766.1 scf7180002755014 99.41 True relocation, scaffold gap is present, inconsistency = -46153 3687595 3693341 2366259 2360513 CM091766.1 scf7180002755014 99.39 True indel: indel (> 5bp) 3640675 3687352 2413208 2366569 CM091766.1 scf7180002755014 99.27 True CONTIG scf7180002755014 2447956 misassembled 101246 129373 1 28211 CM091752.1 scf7180002755015 99.51 True fake: scaffold gap size wrong estimation (extensive) 130059 139795 38352 48201 CM091752.1 scf7180002755015 98.58 True relocation, scaffold gap is present, inconsistency = 94718 234550 236780 48238 50479 CM091752.1 scf7180002755015 98.31 True fake: scaffold gap size wrong estimation (local) 236813 241227 51372 55768 CM091752.1 scf7180002755015 98.64 True local misassembly 241871 242530 56585 57244 CM091752.1 scf7180002755015 99.85 True indel: indel (<= 5bp) 242531 243419 57246 58134 CM091752.1 scf7180002755015 99.55 True fake: scaffold gap size wrong estimation (local) 244721 245943 58791 60013 CM091752.1 scf7180002755015 99.51 True indel: indel (<= 5bp) 246254 247152 60323 61221 CM091752.1 scf7180002755015 99.0 True indel: indel (<= 5bp) 247173 248400 61244 62471 CM091752.1 scf7180002755015 99.35 True fake: scaffold gap size wrong estimation (local) 249860 250610 62974 63724 CM091752.1 scf7180002755015 99.73 True indel: indel (<= 5bp) 250611 251830 63726 64945 CM091752.1 scf7180002755015 99.51 True indel: indel (<= 5bp) 251874 252582 64991 65699 CM091752.1 scf7180002755015 99.72 True fake: scaffold gap size wrong estimation (local) 254125 258274 67241 71395 CM091752.1 scf7180002755015 98.89 True fake: scaffold gap size wrong estimation (local) 259132 262296 73002 76131 CM091752.1 scf7180002755015 97.98 True indel: indel (> 5bp) 262572 264211 76348 78018 CM091752.1 scf7180002755015 97.79 True fake: scaffold gap size wrong estimation (local) 264206 274857 83028 94157 CM091752.1 scf7180002755015 95.13 True fake: scaffold gap size wrong estimation (local) 274785 294203 94793 113804 CM091752.1 scf7180002755015 97.14 True translocation 11902560 11908174 113805 119420 CM091754.1 scf7180002755015 99.26 True fake: scaffold gap size wrong estimation (local) 11908264 11937245 124732 153809 CM091754.1 scf7180002755015 99.03 True relocation, scaffold gap is present, inconsistency = -11921 11937274 12007522 165759 236102 CM091754.1 scf7180002755015 99.31 True relocation, scaffold gap is present, inconsistency = -30706 11979758 11980412 239044 239733 CM091754.1 scf7180002755015 97.47 True translocation, scaffold gap is present 3482011 3502785 253180 273951 CM091765.1 scf7180002755015 99.95 True translocation, scaffold gap is present 12007760 12023019 288455 303296 CM091754.1 scf7180002755015 96.79 True translocation, scaffold gap is present 3502678 3599905 310055 407285 CM091765.1 scf7180002755015 99.8 True translocation, scaffold gap is present 12023056 12024614 414898 416432 CM091754.1 scf7180002755015 97.75 True fake: scaffold gap size wrong estimation (local) 12024614 12040177 417013 432608 CM091754.1 scf7180002755015 99.32 True indel: stretch of mismatches 12040222 12075936 432653 468380 CM091754.1 scf7180002755015 99.55 True relocation, inconsistency = 21821 12100838 12133357 471461 503958 CM091754.1 scf7180002755015 99.48 True relocation, scaffold gap is present, inconsistency = -83000 12133403 12148716 587004 602339 CM091754.1 scf7180002755015 99.34 True translocation, scaffold gap is present 3599791 3615229 602360 617804 CM091765.1 scf7180002755015 99.73 True translocation, scaffold gap is present 12148744 12150762 632751 634768 CM091754.1 scf7180002755015 99.65 True fake: not a misassembly (possible transposable element) 3615137 3619680 634813 639358 CM091765.1 scf7180002755015 99.63 True fake: not a misassembly (possible transposable element) 12150670 12159377 640705 649351 CM091754.1 scf7180002755015 98.79 True translocation, scaffold gap is present 3619564 3629696 652230 662368 CM091765.1 scf7180002755015 99.55 True translocation, scaffold gap is present 12159368 12170577 667212 678429 CM091754.1 scf7180002755015 99.41 True translocation, scaffold gap is present 3629698 3646825 681585 698719 CM091765.1 scf7180002755015 99.75 True translocation, scaffold gap is present 12170587 12185313 705252 720015 CM091754.1 scf7180002755015 98.79 True translocation, scaffold gap is present 3647050 3654995 728632 736567 CM091765.1 scf7180002755015 99.13 True translocation, scaffold gap is present 12185424 12196443 740721 751707 CM091754.1 scf7180002755015 99.28 True translocation, scaffold gap is present 3654989 3660610 754683 760340 CM091765.1 scf7180002755015 98.85 True fake: scaffold gap size wrong estimation (local) 3660627 3662531 765403 767308 CM091765.1 scf7180002755015 99.37 True translocation, scaffold gap is present 12196329 12217646 767329 788672 CM091754.1 scf7180002755015 99.18 True translocation, scaffold gap is present 3662531 3695058 788817 823675 CM091765.1 scf7180002755015 98.23 True relocation, scaffold gap is present, inconsistency = -19011 3695058 3707407 842686 855035 CM091765.1 scf7180002755015 98.88 True fake: scaffold gap size wrong estimation (local) 3707522 3721044 855261 868395 CM091765.1 scf7180002755015 96.42 True fake: scaffold gap size wrong estimation (local) 3721046 3723801 869357 872123 CM091765.1 scf7180002755015 99.56 True fake: scaffold gap size wrong estimation (local) 3723911 3736889 872224 885227 CM091765.1 scf7180002755015 99.2 True indel: indel (> 5bp) 3736937 3745694 885346 893938 CM091765.1 scf7180002755015 97.37 True fake: scaffold gap size wrong estimation (local) 3745860 3751270 894090 899488 CM091765.1 scf7180002755015 99.21 True fake: scaffold gap size wrong estimation (local) 3751405 3764056 899614 912292 CM091765.1 scf7180002755015 98.9 True local misassembly 3764352 3778182 912731 926450 CM091765.1 scf7180002755015 97.86 True local misassembly 3778749 3779453 926785 927489 CM091765.1 scf7180002755015 99.15 True indel: indel (> 5bp) 3779592 3780848 927612 928868 CM091765.1 scf7180002755015 99.6 True fake: scaffold gap size wrong estimation (local) 3781828 3787570 929158 934911 CM091765.1 scf7180002755015 99.13 True fake: scaffold gap size wrong estimation (local) 3787605 3816056 940431 968691 CM091765.1 scf7180002755015 98.21 True fake: scaffold gap size wrong estimation (local) 3816204 3817125 973280 974201 CM091765.1 scf7180002755015 99.67 True fake: scaffold gap size wrong estimation (local) 3817920 3819004 974773 975857 CM091765.1 scf7180002755015 97.97 True fake: scaffold gap size wrong estimation (local) 3819550 3859795 976673 1016732 CM091765.1 scf7180002755015 98.82 True relocation, scaffold gap is present, inconsistency = -10144 3859780 3864343 1026861 1031429 CM091765.1 scf7180002755015 99.74 True fake: scaffold gap size wrong estimation (local) 3865089 3880345 1031604 1046872 CM091765.1 scf7180002755015 98.87 True fake: scaffold gap size wrong estimation (local) 3880458 3897593 1046972 1063840 CM091765.1 scf7180002755015 97.22 True fake: scaffold gap size wrong estimation (local) 3897583 3920451 1067993 1090304 CM091765.1 scf7180002755015 96.35 True fake: scaffold gap size wrong estimation (local) 3920450 3932075 1093579 1105294 CM091765.1 scf7180002755015 98.89 True fake: scaffold gap size wrong estimation (extensive) 3932716 3933245 1113898 1114427 CM091765.1 scf7180002755015 99.25 True fake: scaffold gap size wrong estimation (local) 3933668 3934620 1114513 1115465 CM091765.1 scf7180002755015 99.16 True indel: indel (<= 5bp) 3934621 3936404 1115467 1117250 CM091765.1 scf7180002755015 99.72 True indel: indel (<= 5bp) 3936487 3937269 1117338 1118120 CM091765.1 scf7180002755015 99.49 True indel: indel (<= 5bp) 3937272 3938023 1118121 1118872 CM091765.1 scf7180002755015 99.6 True indel: indel (<= 5bp) 3938025 3938714 1118873 1119562 CM091765.1 scf7180002755015 99.42 True fake: scaffold gap size wrong estimation (local) 3938708 3946954 1124515 1132739 CM091765.1 scf7180002755015 98.96 True local misassembly 3947263 3953174 1132868 1138780 CM091765.1 scf7180002755015 99.31 True local misassembly 3953620 3978461 1138967 1163180 CM091765.1 scf7180002755015 96.67 True fake: scaffold gap size wrong estimation (local) 3978462 3978994 1165675 1166275 CM091765.1 scf7180002755015 95.01 True fake: scaffold gap size wrong estimation (local) 3979010 3983380 1166431 1170721 CM091765.1 scf7180002755015 98.12 True fake: scaffold gap size wrong estimation (local) 3983378 4018044 1174151 1208364 CM091765.1 scf7180002755015 98.17 True fake: scaffold gap size wrong estimation (local) 4018194 4028535 1208490 1218801 CM091765.1 scf7180002755015 98.84 True indel: indel (> 5bp) 4028651 4035483 1218909 1225703 CM091765.1 scf7180002755015 97.89 True fake: scaffold gap size wrong estimation (extensive) 4035504 4109908 1235270 1309613 CM091765.1 scf7180002755015 99.17 True relocation, scaffold gap is present, inconsistency = -28778 4110040 4173038 1338523 1401287 CM091765.1 scf7180002755015 98.89 True relocation, scaffold gap is present, inconsistency = -28647 4173042 4238711 1429938 1495570 CM091765.1 scf7180002755015 99.2 True indel: indel (> 5bp) 4238763 4374687 1495593 1631601 CM091765.1 scf7180002755015 99.33 True indel: indel (> 5bp) 4374735 4451319 1631661 1708183 CM091765.1 scf7180002755015 99.05 True indel: indel (> 5bp) 4451512 4524147 1708383 1780991 CM091765.1 scf7180002755015 99.49 True fake: scaffold gap size wrong estimation (local) 4524293 4543473 1781137 1800451 CM091765.1 scf7180002755015 98.68 True relocation, scaffold gap is present, inconsistency = -11694 4544136 4551859 1812808 1820497 CM091765.1 scf7180002755015 98.98 True fake: scaffold gap size wrong estimation (local) 4552050 4559136 1823388 1830470 CM091765.1 scf7180002755015 99.49 True fake: scaffold gap size wrong estimation (local) 4559495 4582957 1833049 1856483 CM091765.1 scf7180002755015 99.22 True translocation, scaffold gap is present 4593036 4601975 1873710 1882641 CM091759.1 scf7180002755015 99.52 True fake: scaffold gap size wrong estimation (local) 4602190 4606996 1882851 1887707 CM091759.1 scf7180002755015 99.29 True fake: scaffold gap size wrong estimation (local) 4606996 4612370 1890715 1896058 CM091759.1 scf7180002755015 99.05 True fake: scaffold gap size wrong estimation (local) 4612470 4618532 1896153 1902212 CM091759.1 scf7180002755015 99.72 True fake: scaffold gap size wrong estimation (local) 4619694 4627527 1902233 1910066 CM091759.1 scf7180002755015 99.13 True fake: scaffold gap size wrong estimation (extensive) 4627596 4628926 1917830 1919160 CM091759.1 scf7180002755015 99.92 True local misassembly 4628950 4630860 1919350 1921260 CM091759.1 scf7180002755015 99.37 True indel: indel (> 5bp) 4630870 4631575 1921261 1921966 CM091759.1 scf7180002755015 97.17 True local misassembly 4631956 4632917 1921967 1922928 CM091759.1 scf7180002755015 97.92 True indel: indel (<= 5bp) 4632918 4633786 1922930 1923798 CM091759.1 scf7180002755015 99.88 True indel: indel (> 5bp) 4634204 4635585 1924231 1925612 CM091759.1 scf7180002755015 99.42 True indel: indel (<= 5bp) 4635586 4636474 1925614 1926502 CM091759.1 scf7180002755015 99.66 True fake: scaffold gap size wrong estimation (local) 4636499 4639324 1930458 1933291 CM091759.1 scf7180002755015 98.59 True fake: scaffold gap size wrong estimation (local) 4640240 4641203 1933396 1934359 CM091759.1 scf7180002755015 99.79 True indel: indel (<= 5bp) 4641208 4641997 1934360 1935149 CM091759.1 scf7180002755015 99.37 True fake: scaffold gap size wrong estimation (local) 4643187 4643893 1936322 1937028 CM091759.1 scf7180002755015 99.86 True local misassembly 4644018 4644578 1937029 1937589 CM091759.1 scf7180002755015 96.26 True indel: indel (<= 5bp) 4644580 4645504 1937590 1938514 CM091759.1 scf7180002755015 99.57 True fake: scaffold gap size wrong estimation (local) 4645659 4647666 1939382 1941389 CM091759.1 scf7180002755015 99.65 True translocation, scaffold gap is present 10638813 10671130 1973673 1941412 CM091756.1 scf7180002755015 99.48 True indel: indel (> 5bp) 10595144 10638757 2017312 1973738 CM091756.1 scf7180002755015 99.56 True relocation, scaffold gap is present, inconsistency = -75872 10668412 10669066 2019933 2019262 CM091756.1 scf7180002755015 100.0 True fake: scaffold gap size wrong estimation (local) 10611917 10612399 2076521 2076021 CM091756.1 scf7180002755015 99.76 True fake: scaffold gap size wrong estimation (local) 10528116 10594567 2159428 2093870 CM091756.1 scf7180002755015 97.84 True fake: scaffold gap size wrong estimation (local) 10478502 10527519 2207773 2160012 CM091756.1 scf7180002755015 96.34 True indel: indel (> 5bp) 10476283 10478186 2210039 2208142 CM091756.1 scf7180002755015 98.85 True indel: indel (> 5bp) 10459351 10476223 2226872 2210106 CM091756.1 scf7180002755015 98.73 True relocation, inconsistency = 60600 10344358 10398750 2280805 2226873 CM091756.1 scf7180002755015 98.15 True indel: indel (> 5bp) 10286984 10344348 2338106 2280806 CM091756.1 scf7180002755015 98.79 True relocation, scaffold gap is present, inconsistency = -10922 10277463 10286227 2358567 2349785 CM091756.1 scf7180002755015 99.16 True fake: scaffold gap size wrong estimation (extensive) 10270792 10277468 2373848 2367233 CM091756.1 scf7180002755015 98.35 True indel: indel (> 5bp) 10263519 10270707 2381108 2373900 CM091756.1 scf7180002755015 98.96 True fake: scaffold gap size wrong estimation (local) 10261417 10263068 2383077 2381410 CM091756.1 scf7180002755015 98.47 True local misassembly 10153658 10257350 2485376 2383119 CM091756.1 scf7180002755015 97.61 True relocation, scaffold gap is present, inconsistency = -103075 10152318 10153796 2589794 2588313 CM091756.1 scf7180002755015 99.58 True indel: indel (> 5bp) 10110592 10152287 2631551 2589842 CM091756.1 scf7180002755015 99.21 True fake: scaffold gap size wrong estimation (local) 10030853 10110250 2711585 2632985 CM091756.1 scf7180002755015 98.39 True relocation, scaffold gap is present, inconsistency = -70059 10027783 10030798 2784710 2781699 CM091756.1 scf7180002755015 99.14 True fake: scaffold gap size wrong estimation (local) 10022100 10027881 2793265 2787497 CM091756.1 scf7180002755015 98.35 True fake: scaffold gap size wrong estimation (local) 10010034 10022113 2807995 2795858 CM091756.1 scf7180002755015 98.99 True fake: scaffold gap size wrong estimation (local) 10006474 10009746 2811328 2808055 CM091756.1 scf7180002755015 99.48 True fake: scaffold gap size wrong estimation (local) 9986031 10006261 2831770 2811943 CM091756.1 scf7180002755015 96.3 True relocation, scaffold gap is present, inconsistency = -12781 9982500 9985781 2848084 2844801 CM091756.1 scf7180002755015 99.27 True fake: scaffold gap size wrong estimation (local) 9980934 9982259 2849651 2848326 CM091756.1 scf7180002755015 97.13 True indel: indel (> 5bp) 9980406 9980921 2850167 2849652 CM091756.1 scf7180002755015 100.0 True indel: indel (<= 5bp) 9979853 9980405 2850721 2850169 CM091756.1 scf7180002755015 99.64 True local misassembly 9978097 9979199 2852526 2851424 CM091756.1 scf7180002755015 99.64 True fake: scaffold gap size wrong estimation (local) 9973978 9975425 2856388 2854941 CM091756.1 scf7180002755015 99.45 True local misassembly 9971813 9973227 2858550 2857136 CM091756.1 scf7180002755015 99.93 True fake: scaffold gap size wrong estimation (local) 9936341 9971370 2894624 2859477 CM091756.1 scf7180002755015 98.83 True local misassembly 9929307 9932756 2898079 2894625 CM091756.1 scf7180002755015 99.31 True fake: scaffold gap size wrong estimation (local) 9928316 9929010 2899071 2898377 CM091756.1 scf7180002755015 99.71 True indel: indel (<= 5bp) 9927725 9928315 2899664 2899074 CM091756.1 scf7180002755015 99.83 True indel: indel (> 5bp) 9927134 9927709 2900240 2899665 CM091756.1 scf7180002755015 96.18 True local misassembly 9925318 9926765 2901688 2900241 CM091756.1 scf7180002755015 99.52 True local misassembly 9922272 9924583 2904731 2902420 CM091756.1 scf7180002755015 99.74 True indel: indel (> 5bp) 9921391 9922228 2905588 2904751 CM091756.1 scf7180002755015 99.88 True indel: indel (<= 5bp) 9920815 9921390 2906165 2905590 CM091756.1 scf7180002755015 99.83 True local misassembly 9919139 9919823 2907854 2907170 CM091756.1 scf7180002755015 99.56 True fake: scaffold gap size wrong estimation (extensive) 9915652 9917990 2918637 2916298 CM091756.1 scf7180002755015 99.74 True fake: scaffold gap size wrong estimation (local) 9907844 9915571 2928007 2920259 CM091756.1 scf7180002755015 99.47 True CONTIG scf7180002755015 2928007 misassembled 4577376 4586137 8857 31 CM091759.1 scf7180002755016 99.31 True local misassembly 4522972 4577204 63143 8926 CM091759.1 scf7180002755016 99.21 True relocation, scaffold gap is present, inconsistency = -55249 4496175 4522926 145220 118438 CM091759.1 scf7180002755016 98.95 True relocation, scaffold gap is present, inconsistency = -11362 4494065 4496138 158692 156619 CM091759.1 scf7180002755016 99.08 True indel: indel (> 5bp) 4476702 4494019 176048 158732 CM091759.1 scf7180002755016 98.89 True indel: indel (> 5bp) 4475906 4476578 176875 176201 CM091759.1 scf7180002755016 98.81 True relocation, scaffold gap is present, inconsistency = 171095 4647774 4649808 176976 179010 CM091759.1 scf7180002755016 99.56 True indel: indel (<= 5bp) 4649809 4650608 179012 179811 CM091759.1 scf7180002755016 99.38 True fake: scaffold gap size wrong estimation (local) 4651546 4652140 180146 180740 CM091759.1 scf7180002755016 100.0 True fake: scaffold gap size wrong estimation (local) 4653163 4666207 182000 195057 CM091759.1 scf7180002755016 99.38 True relocation, scaffold gap is present, inconsistency = -12758 4666226 4727992 207834 269624 CM091759.1 scf7180002755016 99.18 True fake: scaffold gap size wrong estimation (local) 4728167 4764544 269794 305937 CM091759.1 scf7180002755016 98.9 True indel: indel (> 5bp) 4764651 4871563 306068 412937 CM091759.1 scf7180002755016 99.04 True fake: scaffold gap size wrong estimation (local) 4871680 4889810 413046 431185 CM091759.1 scf7180002755016 99.18 True fake: scaffold gap size wrong estimation (local) 4891167 4906066 431970 446883 CM091759.1 scf7180002755016 99.46 True indel: indel (> 5bp) 4906100 4956679 446925 497559 CM091759.1 scf7180002755016 99.33 True fake: scaffold gap size wrong estimation (local) 4957049 5012556 501633 557058 CM091759.1 scf7180002755016 99.32 True fake: scaffold gap size wrong estimation (local) 5012586 5064913 559096 611376 CM091759.1 scf7180002755016 99.49 True relocation, scaffold gap is present, inconsistency = -52325 5064936 5144005 663724 742892 CM091759.1 scf7180002755016 99.56 True relocation, scaffold gap is present, inconsistency = -34544 5140382 5141255 773813 774686 CM091759.1 scf7180002755016 99.84 True fake: scaffold gap size wrong estimation (local) 5144051 5207446 777496 840791 CM091759.1 scf7180002755016 99.24 True indel: indel (> 5bp) 5207491 5213030 840814 846346 CM091759.1 scf7180002755016 99.44 True relocation, scaffold gap is present, inconsistency = -50705 5213178 5223959 897199 907968 CM091759.1 scf7180002755016 99.39 True fake: scaffold gap size wrong estimation (local) 5224005 5253413 913012 942351 CM091759.1 scf7180002755016 99.03 True local misassembly 5257087 5258574 942352 943838 CM091759.1 scf7180002755016 99.8 True relocation, scaffold gap is present, inconsistency = -24335 5258571 5434672 968170 1144380 CM091759.1 scf7180002755016 99.44 True relocation, scaffold gap is present, inconsistency = -53635 5435213 5440554 1198556 1203901 CM091759.1 scf7180002755016 99.44 True fake: scaffold gap size wrong estimation (local) 5440537 5461633 1208530 1229688 CM091759.1 scf7180002755016 99.13 True fake: scaffold gap size wrong estimation (local) 5462013 5470345 1234471 1242806 CM091759.1 scf7180002755016 99.48 True fake: scaffold gap size wrong estimation (local) 5470393 5482243 1242966 1254795 CM091759.1 scf7180002755016 99.49 True relocation, scaffold gap is present, inconsistency = -11258 5482265 5482808 1266075 1266618 CM091759.1 scf7180002755016 99.63 True fake: scaffold gap size wrong estimation (local) 5482898 5568036 1266704 1351904 CM091759.1 scf7180002755016 99.71 True indel: indel (<= 5bp) 5568039 5586015 1351905 1369876 CM091759.1 scf7180002755016 99.16 True fake: scaffold gap size wrong estimation (local) 5586113 5614703 1369970 1397976 CM091759.1 scf7180002755016 97.48 True indel: indel (> 5bp) 5614851 5625829 1398136 1408993 CM091759.1 scf7180002755016 99.44 True relocation, scaffold gap is present, inconsistency = -31396 5625886 5840882 1440446 1655280 CM091759.1 scf7180002755016 99.19 True CONTIG scf7180002755016 1655280 misassembled 1207745 1208376 2489 3120 CM091752.1 scf7180002755017 99.84 True local misassembly 1209225 1210603 3498 4876 CM091752.1 scf7180002755017 99.49 True indel: indel (<= 5bp) 1211052 1211731 5326 6005 CM091752.1 scf7180002755017 99.41 True indel: indel (<= 5bp) 1212035 1214624 6308 8897 CM091752.1 scf7180002755017 99.42 True local misassembly 1215631 1216402 9435 10206 CM091752.1 scf7180002755017 98.58 True local misassembly 1216941 1217721 10733 11513 CM091752.1 scf7180002755017 99.36 True indel: indel (<= 5bp) 1217733 1219658 11522 13447 CM091752.1 scf7180002755017 99.58 True fake: scaffold gap size wrong estimation (local) 1220994 1222328 14769 16103 CM091752.1 scf7180002755017 98.8 True local misassembly 1223928 1225955 17019 19046 CM091752.1 scf7180002755017 99.56 True local misassembly 1226552 1230064 19643 23155 CM091752.1 scf7180002755017 99.29 True indel: indel (<= 5bp) 1230065 1231168 23158 24261 CM091752.1 scf7180002755017 99.55 True local misassembly 1232257 1232756 25349 25848 CM091752.1 scf7180002755017 99.2 True local misassembly 1234327 1236958 27421 30052 CM091752.1 scf7180002755017 99.54 True indel: indel (<= 5bp) 1237177 1240086 30273 33182 CM091752.1 scf7180002755017 99.28 True fake: scaffold gap size wrong estimation (local) 1240087 1242266 33199 35378 CM091752.1 scf7180002755017 99.63 True indel: indel (<= 5bp) 1242267 1243330 35383 36446 CM091752.1 scf7180002755017 99.62 True local misassembly 1244596 1245314 37720 38438 CM091752.1 scf7180002755017 99.58 True fake: scaffold gap size wrong estimation (local) 1246345 1247013 38864 39545 CM091752.1 scf7180002755017 97.07 True local misassembly 1247743 1249531 39907 41695 CM091752.1 scf7180002755017 99.78 True indel: indel (<= 5bp) 1249533 1250716 41696 42879 CM091752.1 scf7180002755017 98.99 True local misassembly 1251316 1253633 42880 45197 CM091752.1 scf7180002755017 98.96 True indel: indel (<= 5bp) 1253634 1255530 45199 47095 CM091752.1 scf7180002755017 99.63 True indel: indel (<= 5bp) 1255531 1257570 47097 49136 CM091752.1 scf7180002755017 99.51 True indel: indel (<= 5bp) 1257572 1258993 49137 50558 CM091752.1 scf7180002755017 99.37 True local misassembly 1260473 1263249 52036 54812 CM091752.1 scf7180002755017 99.42 True fake: scaffold gap size wrong estimation (local) 1264549 1265170 56136 56757 CM091752.1 scf7180002755017 99.04 True indel: indel (> 5bp) 1265184 1266466 56758 58040 CM091752.1 scf7180002755017 98.29 True local misassembly 1267484 1268012 58247 58775 CM091752.1 scf7180002755017 99.81 True indel: indel (<= 5bp) 1268014 1268703 58776 59465 CM091752.1 scf7180002755017 99.28 True local misassembly 1269388 1270226 59784 60622 CM091752.1 scf7180002755017 99.17 True indel: indel (<= 5bp) 1270559 1271762 60951 62154 CM091752.1 scf7180002755017 99.25 True indel: indel (> 5bp) 1271763 1272266 62162 62665 CM091752.1 scf7180002755017 99.6 True indel: indel (<= 5bp) 1272272 1273265 62666 63659 CM091752.1 scf7180002755017 98.79 True indel: indel (<= 5bp) 1273418 1284182 63811 74549 CM091752.1 scf7180002755017 99.13 True local misassembly 1284810 1285650 74734 75574 CM091752.1 scf7180002755017 98.57 True indel: indel (<= 5bp) 1285651 1286447 75578 76374 CM091752.1 scf7180002755017 99.62 True local misassembly 1287948 1289288 76936 78276 CM091752.1 scf7180002755017 99.4 True indel: indel (<= 5bp) 1289293 1289953 78277 78937 CM091752.1 scf7180002755017 99.09 True local misassembly 1290607 1291561 78938 79892 CM091752.1 scf7180002755017 98.74 True indel: indel (<= 5bp) 1291564 1293882 79893 82211 CM091752.1 scf7180002755017 99.7 True local misassembly 1294604 1295870 82930 84196 CM091752.1 scf7180002755017 97.0 True indel: indel (<= 5bp) 1295989 1296754 84317 85082 CM091752.1 scf7180002755017 99.74 True indel: indel (<= 5bp) 1296756 1297841 85083 86168 CM091752.1 scf7180002755017 99.82 True indel: indel (> 5bp) 1297842 1298367 86175 86700 CM091752.1 scf7180002755017 99.24 True local misassembly 1298918 1300497 87251 88830 CM091752.1 scf7180002755017 99.87 True fake: scaffold gap size wrong estimation (local) 1301117 1302580 89487 90950 CM091752.1 scf7180002755017 99.86 True local misassembly 1303747 1304469 91275 91997 CM091752.1 scf7180002755017 99.03 True indel: indel (<= 5bp) 1304470 1305709 91999 93238 CM091752.1 scf7180002755017 99.27 True local misassembly 1306724 1307711 94258 95245 CM091752.1 scf7180002755017 99.19 True local misassembly 1308623 1309136 96152 96665 CM091752.1 scf7180002755017 99.61 True local misassembly 1310037 1311017 97102 98082 CM091752.1 scf7180002755017 98.98 True indel: indel (> 5bp) 1311225 1313053 98301 100129 CM091752.1 scf7180002755017 98.69 True local misassembly 1314342 1315230 100150 101037 CM091752.1 scf7180002755017 99.44 True local misassembly 1315352 1315939 101287 101874 CM091752.1 scf7180002755017 96.09 True local misassembly 1316277 1319160 101875 104758 CM091752.1 scf7180002755017 99.76 True indel: indel (> 5bp) 1319161 1319795 104770 105404 CM091752.1 scf7180002755017 100.0 True local misassembly 1320447 1322791 105624 107968 CM091752.1 scf7180002755017 99.57 True indel: indel (> 5bp) 1322792 1323717 107977 108902 CM091752.1 scf7180002755017 98.81 True local misassembly 1324897 1326875 108903 110881 CM091752.1 scf7180002755017 99.55 True indel: indel (<= 5bp) 1326877 1328441 110882 112446 CM091752.1 scf7180002755017 99.81 True indel: indel (> 5bp) 1328607 1329584 112604 113581 CM091752.1 scf7180002755017 99.8 True indel: indel (<= 5bp) 1329585 1330906 113583 114904 CM091752.1 scf7180002755017 99.7 True indel: indel (<= 5bp) 1330907 1332469 114906 116468 CM091752.1 scf7180002755017 99.36 True indel: indel (<= 5bp) 1332472 1334167 116469 118164 CM091752.1 scf7180002755017 99.17 True local misassembly 1334792 1336271 118632 120111 CM091752.1 scf7180002755017 99.73 True indel: indel (> 5bp) 1336308 1339630 120112 123434 CM091752.1 scf7180002755017 99.31 True indel: indel (<= 5bp) 1339631 1343062 123436 126867 CM091752.1 scf7180002755017 99.77 True indel: indel (<= 5bp) 1343063 1343615 126869 127421 CM091752.1 scf7180002755017 99.64 True indel: indel (<= 5bp) 1343616 1344147 127423 127954 CM091752.1 scf7180002755017 100.0 True indel: indel (<= 5bp) 1344228 1345504 128038 129314 CM091752.1 scf7180002755017 99.45 True local misassembly 1346362 1348734 130175 132547 CM091752.1 scf7180002755017 99.58 True relocation, scaffold gap is present, inconsistency = -32832 1349352 1349866 165997 166511 CM091752.1 scf7180002755017 99.42 True indel: indel (<= 5bp) 1349993 1350722 166634 167363 CM091752.1 scf7180002755017 98.77 True local misassembly 1351127 1368998 167506 185382 CM091752.1 scf7180002755017 98.85 True fake: scaffold gap size wrong estimation (local) 1368982 1370276 187612 188905 CM091752.1 scf7180002755017 99.63 True indel: stretch of mismatches 1370277 1380402 188906 199060 CM091752.1 scf7180002755017 98.9 True relocation, scaffold gap is present, inconsistency = -10767 1381383 1382930 210808 212358 CM091752.1 scf7180002755017 99.03 True local misassembly 1383688 1387851 212736 216900 CM091752.1 scf7180002755017 98.5 True indel: indel (> 5bp) 1388150 1391194 217239 220291 CM091752.1 scf7180002755017 98.4 True local misassembly 1391726 1418472 220819 246828 CM091752.1 scf7180002755017 95.96 True fake: scaffold gap size wrong estimation (local) 1418605 1434719 246993 262622 CM091752.1 scf7180002755017 95.92 True fake: scaffold gap size wrong estimation (local) 1435790 1437193 267851 269254 CM091752.1 scf7180002755017 99.5 True fake: scaffold gap size wrong estimation (local) 1437194 1437780 270836 271422 CM091752.1 scf7180002755017 97.79 True indel: indel (<= 5bp) 1438271 1439689 271915 273333 CM091752.1 scf7180002755017 99.51 True local misassembly 1440637 1441366 274283 275012 CM091752.1 scf7180002755017 98.9 True local misassembly 1442486 1443151 275699 276364 CM091752.1 scf7180002755017 99.4 True fake: scaffold gap size wrong estimation (local) 1443552 1448637 276793 281878 CM091752.1 scf7180002755017 99.31 True indel: indel (> 5bp) 1449062 1449676 282291 282905 CM091752.1 scf7180002755017 98.7 True indel: indel (> 5bp) 1449677 1450568 282912 283803 CM091752.1 scf7180002755017 97.76 True indel: indel (<= 5bp) 1450570 1451739 283804 284973 CM091752.1 scf7180002755017 99.91 True local misassembly 1452415 1453192 285276 286053 CM091752.1 scf7180002755017 99.36 True indel: indel (<= 5bp) 1453193 1454226 286055 287088 CM091752.1 scf7180002755017 99.71 True indel: stretch of mismatches 1454262 1454939 287124 287801 CM091752.1 scf7180002755017 99.41 True indel: indel (<= 5bp) 1454940 1455598 287803 288461 CM091752.1 scf7180002755017 100.0 True fake: scaffold gap size wrong estimation (local) 1456888 1459199 289764 292075 CM091752.1 scf7180002755017 99.65 True indel: indel (<= 5bp) 1459200 1459721 292077 292598 CM091752.1 scf7180002755017 99.81 True indel: indel (> 5bp) 1460104 1461093 292988 293977 CM091752.1 scf7180002755017 99.8 True indel: indel (> 5bp) 1461117 1461906 293978 294767 CM091752.1 scf7180002755017 99.49 True indel: indel (<= 5bp) 1461908 1462733 294768 295593 CM091752.1 scf7180002755017 99.76 True fake: scaffold gap size wrong estimation (local) 1462734 1464036 295626 296928 CM091752.1 scf7180002755017 99.0 True indel: indel (<= 5bp) 1464038 1464696 296929 297587 CM091752.1 scf7180002755017 99.39 True local misassembly 1465670 1466362 297858 298550 CM091752.1 scf7180002755017 99.42 True indel: stretch of mismatches 1466542 1467514 298730 299702 CM091752.1 scf7180002755017 99.28 True fake: scaffold gap size wrong estimation (local) 1469292 1470361 301430 302499 CM091752.1 scf7180002755017 99.63 True indel: indel (<= 5bp) 1470366 1471946 302500 304080 CM091752.1 scf7180002755017 99.62 True indel: indel (<= 5bp) 1471947 1472616 304084 304753 CM091752.1 scf7180002755017 99.4 True fake: scaffold gap size wrong estimation (local) 1472655 1473888 308765 309998 CM091752.1 scf7180002755017 99.19 True local misassembly 1474413 1477955 310525 314067 CM091752.1 scf7180002755017 99.83 True indel: stretch of mismatches 1477987 1479515 314099 315627 CM091752.1 scf7180002755017 99.87 True fake: scaffold gap size wrong estimation (local) 1479691 1480542 315833 316684 CM091752.1 scf7180002755017 96.24 True fake: scaffold gap size wrong estimation (local) 1481912 1482954 316811 317853 CM091752.1 scf7180002755017 99.52 True indel: indel (<= 5bp) 1482955 1483665 317855 318565 CM091752.1 scf7180002755017 98.87 True indel: indel (<= 5bp) 1483671 1484867 318566 319762 CM091752.1 scf7180002755017 99.16 True indel: indel (<= 5bp) 1484868 1485371 319764 320267 CM091752.1 scf7180002755017 98.81 True indel: indel (<= 5bp) 1485375 1485904 320268 320797 CM091752.1 scf7180002755017 99.62 True indel: indel (> 5bp) 1486285 1487084 321199 321998 CM091752.1 scf7180002755017 98.75 True fake: scaffold gap size wrong estimation (local) 1487624 1488629 324507 325512 CM091752.1 scf7180002755017 99.6 True fake: scaffold gap size wrong estimation (local) 1488715 1489356 326329 326970 CM091752.1 scf7180002755017 99.84 True indel: stretch of mismatches 1489394 1490132 327008 327746 CM091752.1 scf7180002755017 99.86 True indel: indel (<= 5bp) 1490134 1490799 327747 328412 CM091752.1 scf7180002755017 99.7 True indel: indel (<= 5bp) 1490961 1491891 328575 329505 CM091752.1 scf7180002755017 99.79 True fake: scaffold gap size wrong estimation (local) 1493348 1494984 330933 332569 CM091752.1 scf7180002755017 99.39 True indel: indel (<= 5bp) 1494985 1496324 332571 333910 CM091752.1 scf7180002755017 99.85 True indel: indel (<= 5bp) 1496325 1497002 333915 334592 CM091752.1 scf7180002755017 99.41 True indel: indel (> 5bp) 1497040 1498788 334593 336341 CM091752.1 scf7180002755017 99.37 True indel: indel (<= 5bp) 1498789 1500116 336343 337670 CM091752.1 scf7180002755017 100.0 True indel: indel (> 5bp) 1500117 1501839 337681 339403 CM091752.1 scf7180002755017 99.65 True local misassembly 1502979 1504056 340552 341629 CM091752.1 scf7180002755017 98.98 True local misassembly 1504653 1505415 342235 342997 CM091752.1 scf7180002755017 99.34 True local misassembly 1506495 1507249 344130 344884 CM091752.1 scf7180002755017 99.21 True indel: indel (<= 5bp) 1507251 1508385 344885 346019 CM091752.1 scf7180002755017 99.56 True local misassembly 1509380 1510434 346020 347074 CM091752.1 scf7180002755017 99.81 True indel: indel (<= 5bp) 1510435 1511050 347076 347691 CM091752.1 scf7180002755017 99.84 True indel: indel (<= 5bp) 1511054 1511594 347692 348232 CM091752.1 scf7180002755017 99.26 True fake: scaffold gap size wrong estimation (local) 1511800 1512781 348423 349404 CM091752.1 scf7180002755017 98.88 True indel: indel (<= 5bp) 1512782 1513778 349406 350402 CM091752.1 scf7180002755017 99.7 True local misassembly 1515112 1517457 350718 353063 CM091752.1 scf7180002755017 99.06 True fake: scaffold gap size wrong estimation (local) 1517841 1519564 353451 355174 CM091752.1 scf7180002755017 98.96 True local misassembly 1520541 1529180 355321 363768 CM091752.1 scf7180002755017 96.02 True fake: scaffold gap size wrong estimation (extensive) 1529540 1530657 371392 372509 CM091752.1 scf7180002755017 99.37 True fake: scaffold gap size wrong estimation (local) 1531459 1532805 372847 374195 CM091752.1 scf7180002755017 98.3 True local misassembly 1534546 1535471 375210 376135 CM091752.1 scf7180002755017 99.68 True indel: indel (> 5bp) 1535472 1536188 376151 376867 CM091752.1 scf7180002755017 98.61 True local misassembly 1537691 1540885 377345 380539 CM091752.1 scf7180002755017 99.72 True local misassembly 1542236 1543151 381221 382136 CM091752.1 scf7180002755017 99.78 True indel: indel (<= 5bp) 1543152 1545269 382138 384255 CM091752.1 scf7180002755017 98.82 True indel: indel (<= 5bp) 1545270 1546479 384257 385466 CM091752.1 scf7180002755017 99.09 True indel: indel (<= 5bp) 1546484 1547776 385467 386759 CM091752.1 scf7180002755017 99.69 True local misassembly 1548299 1549120 387282 388103 CM091752.1 scf7180002755017 99.51 True local misassembly 1549705 1550717 388690 389702 CM091752.1 scf7180002755017 99.9 True indel: indel (<= 5bp) 1550718 1551359 389704 390345 CM091752.1 scf7180002755017 100.0 True indel: indel (<= 5bp) 1551360 1551991 390347 390978 CM091752.1 scf7180002755017 99.68 True indel: indel (<= 5bp) 1551992 1553435 390980 392423 CM091752.1 scf7180002755017 99.72 True indel: indel (<= 5bp) 1553631 1554299 392621 393289 CM091752.1 scf7180002755017 99.7 True indel: indel (<= 5bp) 1554300 1554855 393291 393846 CM091752.1 scf7180002755017 99.46 True relocation, scaffold gap is present, inconsistency = -13163 1555854 1558688 408008 410838 CM091752.1 scf7180002755017 98.59 True local misassembly 1560524 1561729 412376 413581 CM091752.1 scf7180002755017 99.67 True local misassembly 1562721 1564539 413970 415788 CM091752.1 scf7180002755017 98.96 True fake: scaffold gap size wrong estimation (local) 1566377 1567086 416455 417164 CM091752.1 scf7180002755017 99.3 True indel: indel (> 5bp) 1567443 1568313 417498 418368 CM091752.1 scf7180002755017 99.54 True indel: indel (> 5bp) 1568382 1569209 418423 419250 CM091752.1 scf7180002755017 99.52 True indel: indel (<= 5bp) 1569210 1570250 419252 420292 CM091752.1 scf7180002755017 99.52 True fake: scaffold gap size wrong estimation (local) 1570698 1572399 420713 422417 CM091752.1 scf7180002755017 99.65 True local misassembly 1573093 1574440 422809 424156 CM091752.1 scf7180002755017 99.11 True indel: indel (<= 5bp) 1574441 1575495 424158 425212 CM091752.1 scf7180002755017 99.53 True fake: scaffold gap size wrong estimation (local) 1575953 1577300 425686 427033 CM091752.1 scf7180002755017 99.78 True local misassembly 1579627 1580776 427246 428395 CM091752.1 scf7180002755017 99.83 True indel: indel (> 5bp) 1581153 1582219 428783 429849 CM091752.1 scf7180002755017 99.34 True indel: indel (<= 5bp) 1582225 1583053 429850 430678 CM091752.1 scf7180002755017 99.64 True indel: indel (> 5bp) 1583061 1584460 430679 432078 CM091752.1 scf7180002755017 96.71 True fake: scaffold gap size wrong estimation (local) 1588472 1589244 437191 437960 CM091752.1 scf7180002755017 99.48 True fake: scaffold gap size wrong estimation (local) 1594279 1594906 440874 441501 CM091752.1 scf7180002755017 99.04 True local misassembly 1598790 1599845 444229 445284 CM091752.1 scf7180002755017 98.58 True local misassembly 1601549 1602171 446564 447186 CM091752.1 scf7180002755017 98.88 True relocation, scaffold gap is present, inconsistency = -10827 1606661 1608652 462503 464494 CM091752.1 scf7180002755017 99.65 True local misassembly 1609697 1610467 464738 465508 CM091752.1 scf7180002755017 99.48 True indel: indel (<= 5bp) 1610714 1613580 465757 468623 CM091752.1 scf7180002755017 99.86 True fake: scaffold gap size wrong estimation (local) 1613581 1615854 468648 470921 CM091752.1 scf7180002755017 98.94 True indel: indel (> 5bp) 1615923 1616448 471000 471525 CM091752.1 scf7180002755017 100.0 True indel: indel (> 5bp) 1616475 1617265 471574 472364 CM091752.1 scf7180002755017 99.75 True indel: indel (<= 5bp) 1617267 1617839 472365 472937 CM091752.1 scf7180002755017 100.0 True indel: indel (<= 5bp) 1617842 1620198 472938 475294 CM091752.1 scf7180002755017 99.87 True local misassembly 1620927 1622028 476022 477123 CM091752.1 scf7180002755017 99.91 True fake: scaffold gap size wrong estimation (local) 1623086 1627291 478062 482272 CM091752.1 scf7180002755017 99.28 True fake: scaffold gap size wrong estimation (local) 1629215 1629826 483712 484323 CM091752.1 scf7180002755017 99.84 True indel: indel (> 5bp) 1630134 1630706 484646 485218 CM091752.1 scf7180002755017 99.48 True indel: indel (<= 5bp) 1630783 1632658 485294 487169 CM091752.1 scf7180002755017 99.79 True indel: indel (<= 5bp) 1632660 1634250 487170 488760 CM091752.1 scf7180002755017 99.31 True indel: indel (> 5bp) 1634271 1635139 488765 489633 CM091752.1 scf7180002755017 99.88 True indel: indel (<= 5bp) 1635140 1635742 489635 490237 CM091752.1 scf7180002755017 99.83 True indel: indel (<= 5bp) 1635743 1637093 490240 491590 CM091752.1 scf7180002755017 99.63 True indel: indel (<= 5bp) 1637108 1637850 491607 492349 CM091752.1 scf7180002755017 99.6 True fake: scaffold gap size wrong estimation (local) 1637851 1639793 492363 494305 CM091752.1 scf7180002755017 99.43 True fake: scaffold gap size wrong estimation (local) 1641408 1642141 495250 495983 CM091752.1 scf7180002755017 99.73 True indel: indel (<= 5bp) 1642144 1643217 495984 497057 CM091752.1 scf7180002755017 99.72 True indel: indel (<= 5bp) 1643221 1644689 497058 498526 CM091752.1 scf7180002755017 99.59 True fake: scaffold gap size wrong estimation (local) 1644690 1645277 498964 499551 CM091752.1 scf7180002755017 98.64 True indel: indel (> 5bp) 1645410 1648264 499692 502546 CM091752.1 scf7180002755017 99.68 True indel: indel (<= 5bp) 1648265 1649143 502548 503426 CM091752.1 scf7180002755017 99.43 True indel: indel (<= 5bp) 1649144 1649767 503428 504051 CM091752.1 scf7180002755017 99.68 True indel: indel (> 5bp) 1649789 1650292 504079 504582 CM091752.1 scf7180002755017 99.01 True indel: indel (<= 5bp) 1650293 1651663 504584 505954 CM091752.1 scf7180002755017 99.85 True local misassembly 1652907 1653693 506070 506856 CM091752.1 scf7180002755017 99.36 True indel: indel (<= 5bp) 1653694 1654374 506858 507538 CM091752.1 scf7180002755017 99.71 True indel: indel (<= 5bp) 1654375 1654975 507540 508140 CM091752.1 scf7180002755017 99.0 True indel: indel (<= 5bp) 1655012 1655573 508179 508740 CM091752.1 scf7180002755017 100.0 True fake: scaffold gap size wrong estimation (local) 1656291 1658715 509482 511906 CM091752.1 scf7180002755017 99.63 True indel: indel (<= 5bp) 1658717 1659491 511907 512681 CM091752.1 scf7180002755017 99.35 True indel: indel (<= 5bp) 1659493 1661724 512682 514913 CM091752.1 scf7180002755017 99.51 True indel: indel (<= 5bp) 1661726 1663865 514914 517053 CM091752.1 scf7180002755017 99.63 True fake: scaffold gap size wrong estimation (local) 1664573 1665117 517788 518332 CM091752.1 scf7180002755017 96.15 True fake: scaffold gap size wrong estimation (local) 1667520 1670015 520731 523226 CM091752.1 scf7180002755017 99.48 True fake: scaffold gap size wrong estimation (local) 1670500 1671191 523730 524421 CM091752.1 scf7180002755017 100.0 True local misassembly 1672255 1673155 525487 526387 CM091752.1 scf7180002755017 100.0 True local misassembly 1673882 1674484 527110 527712 CM091752.1 scf7180002755017 99.17 True indel: indel (<= 5bp) 1674486 1676218 527713 529445 CM091752.1 scf7180002755017 99.71 True fake: scaffold gap size wrong estimation (local) 1676407 1677175 532245 533013 CM091752.1 scf7180002755017 99.09 True indel: indel (> 5bp) 1677219 1678008 533014 533803 CM091752.1 scf7180002755017 97.09 True indel: indel (> 5bp) 1678030 1678754 533804 534528 CM091752.1 scf7180002755017 99.31 True indel: indel (<= 5bp) 1678870 1679484 534646 535260 CM091752.1 scf7180002755017 99.84 True fake: scaffold gap size wrong estimation (local) 1679974 1680479 538486 538991 CM091752.1 scf7180002755017 96.44 True indel: indel (<= 5bp) 1680735 1681307 539245 539817 CM091752.1 scf7180002755017 96.34 True indel: indel (<= 5bp) 1681311 1683090 539818 541597 CM091752.1 scf7180002755017 99.66 True local misassembly 1683908 1685640 542421 544153 CM091752.1 scf7180002755017 99.37 True indel: indel (> 5bp) 1685641 1686470 544160 544989 CM091752.1 scf7180002755017 99.76 True indel: indel (<= 5bp) 1686472 1687715 544990 546233 CM091752.1 scf7180002755017 99.92 True indel: indel (> 5bp) 1687716 1688686 546240 547210 CM091752.1 scf7180002755017 99.79 True fake: scaffold gap size wrong estimation (local) 1688687 1689924 547228 548465 CM091752.1 scf7180002755017 99.43 True indel: stretch of mismatches 1690239 1692055 548780 550596 CM091752.1 scf7180002755017 99.94 True local misassembly 1694606 1696059 551135 552588 CM091752.1 scf7180002755017 99.45 True fake: scaffold gap size wrong estimation (local) 1696060 1696888 552616 553444 CM091752.1 scf7180002755017 100.0 True indel: indel (<= 5bp) 1696889 1697568 553448 554127 CM091752.1 scf7180002755017 99.12 True indel: indel (<= 5bp) 1697570 1698161 554128 554719 CM091752.1 scf7180002755017 99.16 True indel: indel (<= 5bp) 1698162 1698894 554721 555453 CM091752.1 scf7180002755017 99.32 True indel: indel (<= 5bp) 1698895 1699666 555455 556226 CM091752.1 scf7180002755017 100.0 True indel: indel (<= 5bp) 1699667 1700297 556228 556858 CM091752.1 scf7180002755017 99.84 True indel: indel (<= 5bp) 1700298 1704364 556861 560927 CM091752.1 scf7180002755017 99.34 True indel: indel (<= 5bp) 1704365 1706060 560933 562628 CM091752.1 scf7180002755017 99.71 True indel: indel (<= 5bp) 1706311 1707494 562881 564064 CM091752.1 scf7180002755017 99.66 True indel: indel (<= 5bp) 1707495 1708240 564066 564811 CM091752.1 scf7180002755017 100.0 True local misassembly 1709057 1710267 565629 566839 CM091752.1 scf7180002755017 99.34 True fake: scaffold gap size wrong estimation (local) 1710485 1711550 567310 568375 CM091752.1 scf7180002755017 99.72 True indel: indel (> 5bp) 1711577 1712403 568376 569202 CM091752.1 scf7180002755017 100.0 True indel: indel (<= 5bp) 1712737 1715109 569537 571909 CM091752.1 scf7180002755017 99.45 True indel: indel (<= 5bp) 1715110 1719154 571912 575956 CM091752.1 scf7180002755017 99.6 True indel: indel (<= 5bp) 1719157 1720685 575957 577485 CM091752.1 scf7180002755017 99.61 True local misassembly 1720854 1721904 577486 578536 CM091752.1 scf7180002755017 96.48 True indel: indel (<= 5bp) 1721905 1722778 578539 579412 CM091752.1 scf7180002755017 99.89 True fake: scaffold gap size wrong estimation (local) 1722942 1725191 579574 581822 CM091752.1 scf7180002755017 99.64 True fake: scaffold gap size wrong estimation (local) 1725633 1727196 582279 583842 CM091752.1 scf7180002755017 98.47 True indel: indel (<= 5bp) 1727197 1728037 583845 584685 CM091752.1 scf7180002755017 99.64 True indel: indel (> 5bp) 1728038 1729272 584696 585930 CM091752.1 scf7180002755017 99.19 True local misassembly 1729875 1732799 586534 589458 CM091752.1 scf7180002755017 99.76 True local misassembly 1734954 1736542 589835 591423 CM091752.1 scf7180002755017 99.31 True fake: scaffold gap size wrong estimation (local) 1736749 1739951 591645 594847 CM091752.1 scf7180002755017 99.75 True fake: scaffold gap size wrong estimation (local) 1741746 1742341 595697 596292 CM091752.1 scf7180002755017 99.5 True fake: scaffold gap size wrong estimation (local) 1742623 1745997 596596 599970 CM091752.1 scf7180002755017 99.5 True fake: scaffold gap size wrong estimation (local) 1747590 1748317 600908 601635 CM091752.1 scf7180002755017 99.18 True indel: indel (<= 5bp) 1748319 1749507 601636 602824 CM091752.1 scf7180002755017 99.66 True local misassembly 1750335 1753459 603622 606747 CM091752.1 scf7180002755017 99.23 True fake: scaffold gap size wrong estimation (local) 1754961 1756170 611706 612915 CM091752.1 scf7180002755017 99.5 True indel: indel (> 5bp) 1756171 1757215 612925 613969 CM091752.1 scf7180002755017 98.18 True indel: indel (<= 5bp) 1757220 1757753 613970 614503 CM091752.1 scf7180002755017 100.0 True fake: scaffold gap size wrong estimation (local) 1759531 1761338 615874 617681 CM091752.1 scf7180002755017 99.28 True local misassembly 1762564 1763410 618255 619101 CM091752.1 scf7180002755017 100.0 True indel: indel (<= 5bp) 1763412 1764795 619102 620485 CM091752.1 scf7180002755017 99.64 True fake: scaffold gap size wrong estimation (local) 1765486 1766172 621163 621849 CM091752.1 scf7180002755017 99.85 True indel: indel (> 5bp) 1766179 1767229 621850 622900 CM091752.1 scf7180002755017 99.33 True indel: indel (<= 5bp) 1767413 1770557 623086 626230 CM091752.1 scf7180002755017 99.71 True fake: scaffold gap size wrong estimation (local) 1772065 1775701 627784 631420 CM091752.1 scf7180002755017 99.89 True fake: scaffold gap size wrong estimation (local) 1775786 1776639 631531 632384 CM091752.1 scf7180002755017 100.0 True indel: indel (<= 5bp) 1776641 1777218 632385 632962 CM091752.1 scf7180002755017 99.83 True indel: indel (<= 5bp) 1777219 1779032 632964 634777 CM091752.1 scf7180002755017 99.56 True indel: indel (> 5bp) 1779268 1780177 635000 635909 CM091752.1 scf7180002755017 97.58 True indel: indel (<= 5bp) 1780179 1781906 635910 637637 CM091752.1 scf7180002755017 99.71 True fake: scaffold gap size wrong estimation (local) 1781907 1782885 637661 638639 CM091752.1 scf7180002755017 99.9 True local misassembly 1783726 1784634 639489 640397 CM091752.1 scf7180002755017 99.78 True indel: indel (<= 5bp) 1784660 1785958 640422 641720 CM091752.1 scf7180002755017 99.62 True indel: indel (<= 5bp) 1786148 1786892 641912 642656 CM091752.1 scf7180002755017 99.19 True fake: scaffold gap size wrong estimation (local) 1786985 1787512 642737 643264 CM091752.1 scf7180002755017 99.62 True indel: indel (<= 5bp) 1787536 1788100 643290 643854 CM091752.1 scf7180002755017 99.12 True indel: indel (<= 5bp) 1788101 1789169 643856 644924 CM091752.1 scf7180002755017 99.16 True indel: indel (<= 5bp) 1789171 1790238 644925 645992 CM091752.1 scf7180002755017 100.0 True fake: scaffold gap size wrong estimation (local) 1791605 1792394 647364 648153 CM091752.1 scf7180002755017 97.97 True fake: scaffold gap size wrong estimation (local) 1793993 1794951 649077 650035 CM091752.1 scf7180002755017 97.29 True fake: scaffold gap size wrong estimation (local) 1794983 1796215 650077 651309 CM091752.1 scf7180002755017 99.76 True indel: indel (<= 5bp) 1796516 1797532 651613 652629 CM091752.1 scf7180002755017 100.0 True fake: scaffold gap size wrong estimation (local) 1797533 1799237 652649 654353 CM091752.1 scf7180002755017 99.77 True indel: indel (<= 5bp) 1799239 1799789 654354 654904 CM091752.1 scf7180002755017 99.46 True local misassembly 1801294 1802173 655546 656425 CM091752.1 scf7180002755017 99.09 True indel: indel (<= 5bp) 1802174 1803033 656427 657286 CM091752.1 scf7180002755017 99.77 True fake: scaffold gap size wrong estimation (local) 1803119 1804317 657395 658593 CM091752.1 scf7180002755017 99.33 True fake: scaffold gap size wrong estimation (local) 1804636 1805898 658930 660192 CM091752.1 scf7180002755017 96.6 True fake: scaffold gap size wrong estimation (local) 1806272 1806791 660586 661105 CM091752.1 scf7180002755017 99.23 True fake: scaffold gap size wrong estimation (local) 1807264 1808200 661603 662539 CM091752.1 scf7180002755017 99.57 True CONTIG scf7180002755017 662539 misassembled 2897761 2900294 2534 1 CM091766.1 scf7180002755018 99.41 True fake: scaffold gap size wrong estimation (local) 2895378 2897122 4665 2921 CM091766.1 scf7180002755018 96.1 True indel: indel (<= 5bp) 2893421 2895377 6623 4667 CM091766.1 scf7180002755018 99.59 True indel: indel (<= 5bp) 2892416 2893419 7627 6624 CM091766.1 scf7180002755018 99.6 True fake: scaffold gap size wrong estimation (local) 2887860 2890901 11749 8708 CM091766.1 scf7180002755018 99.57 True fake: scaffold gap size wrong estimation (local) 2835404 2887479 68002 15922 CM091766.1 scf7180002755018 99.43 True relocation, scaffold gap is present, inconsistency = -37775 2872685 2873158 68542 68023 CM091766.1 scf7180002755018 96.67 True fake: scaffold gap size wrong estimation (local) 2826694 2835030 113914 105577 CM091766.1 scf7180002755018 99.74 True fake: scaffold gap size wrong estimation (extensive) 2760681 2826812 187799 121640 CM091766.1 scf7180002755018 99.83 True indel: indel (> 5bp) 2723884 2760606 224626 187901 CM091766.1 scf7180002755018 99.29 True relocation, scaffold gap is present, inconsistency = -102783 2770921 2771462 280390 279831 CM091766.1 scf7180002755018 100.0 True fake: scaffold gap size wrong estimation (local) 2703633 2723883 347403 327441 CM091766.1 scf7180002755018 97.45 True fake: scaffold gap size wrong estimation (local) 2690420 2703513 360556 347506 CM091766.1 scf7180002755018 99.1 True fake: scaffold gap size wrong estimation (local) 2654737 2690237 396186 360645 CM091766.1 scf7180002755018 99.56 True relocation, scaffold gap is present, inconsistency = -24639 2649156 2654765 426408 420797 CM091766.1 scf7180002755018 99.88 True relocation, scaffold gap is present, inconsistency = -13116 2608687 2648412 480002 440268 CM091766.1 scf7180002755018 99.9 True relocation, scaffold gap is present, inconsistency = -50155 2636076 2636804 502770 502040 CM091766.1 scf7180002755018 99.82 True translocation, scaffold gap is present 3008761 3015165 532216 538613 CM091762.1 scf7180002755018 99.38 True local misassembly 3018851 3020668 538614 540428 CM091762.1 scf7180002755018 98.85 True translocation, scaffold gap is present 2597980 2608807 551275 540449 CM091766.1 scf7180002755018 99.93 True translocation, scaffold gap is present 3020640 3025859 561462 566687 CM091762.1 scf7180002755018 99.24 True translocation, scaffold gap is present 2592507 2598015 572216 566708 CM091766.1 scf7180002755018 100.0 True fake: not a misassembly (possible transposable element) 3026025 3027884 574722 576568 CM091762.1 scf7180002755018 98.66 True fake: not a misassembly (possible transposable element) 2586908 2592491 582171 576589 CM091766.1 scf7180002755018 99.98 True translocation, scaffold gap is present 3027848 3033650 583136 588931 CM091762.1 scf7180002755018 99.28 True translocation, scaffold gap is present 2573329 2586584 606781 593513 CM091766.1 scf7180002755018 99.74 True indel: indel (> 5bp) 2560539 2573224 619588 606892 CM091766.1 scf7180002755018 99.28 True fake: scaffold gap size wrong estimation (extensive) 2503549 2560542 684416 627476 CM091766.1 scf7180002755018 99.0 True fake: scaffold gap size wrong estimation (local) 2455846 2502691 730033 684611 CM091766.1 scf7180002755018 95.99 True relocation, scaffold gap is present, inconsistency = -33755 2468861 2469430 750774 750204 CM091766.1 scf7180002755018 100.0 True fake: scaffold gap size wrong estimation (local) 2441479 2455792 777090 762735 CM091766.1 scf7180002755018 99.44 True fake: scaffold gap size wrong estimation (local) 2426736 2441018 793126 778851 CM091766.1 scf7180002755018 99.27 True fake: scaffold gap size wrong estimation (local) 2419192 2426026 806574 799739 CM091766.1 scf7180002755018 99.5 True fake: scaffold gap size wrong estimation (local) 2410818 2419152 821380 813039 CM091766.1 scf7180002755018 99.17 True fake: scaffold gap size wrong estimation (local) 2393497 2409549 838219 822197 CM091766.1 scf7180002755018 99.0 True fake: scaffold gap size wrong estimation (local) 2380814 2393528 851598 838882 CM091766.1 scf7180002755018 99.19 True fake: scaffold gap size wrong estimation (local) 2347065 2380819 890097 856563 CM091766.1 scf7180002755018 98.35 True relocation, scaffold gap is present, inconsistency = -18454 2328717 2346332 926850 909284 CM091766.1 scf7180002755018 99.02 True local misassembly 2321600 2327892 933155 926851 CM091766.1 scf7180002755018 99.13 True indel: indel (> 5bp) 2318239 2321519 936487 933198 CM091766.1 scf7180002755018 99.24 True relocation, scaffold gap is present, inconsistency = -26901 2276938 2318353 1004637 963274 CM091766.1 scf7180002755018 99.27 True relocation, scaffold gap is present, inconsistency = -41546 2186546 2276949 1148201 1046172 CM091766.1 scf7180002755018 96.73 True relocation, scaffold gap is present, inconsistency = -17116 2151435 2186535 1200421 1165328 CM091766.1 scf7180002755018 99.68 True relocation, scaffold gap is present, inconsistency = -10158 2128487 2150629 1233573 1211385 CM091766.1 scf7180002755018 99.39 True relocation, scaffold gap is present, inconsistency = -21792 2088050 2128412 1295754 1255440 CM091766.1 scf7180002755018 99.25 True fake: scaffold gap size wrong estimation (local) 2086794 2087821 1297010 1295983 CM091766.1 scf7180002755018 97.18 True local misassembly 2085493 2086390 1297908 1297011 CM091766.1 scf7180002755018 99.67 True indel: indel (<= 5bp) 2084148 2085491 1299252 1297909 CM091766.1 scf7180002755018 99.85 True indel: indel (<= 5bp) 2083060 2083817 1300343 1299586 CM091766.1 scf7180002755018 99.21 True local misassembly 2080507 2082886 1302723 1300344 CM091766.1 scf7180002755018 99.54 True indel: indel (<= 5bp) 2079581 2080506 1303650 1302725 CM091766.1 scf7180002755018 99.14 True fake: scaffold gap size wrong estimation (local) 2073998 2078523 1314077 1309552 CM091766.1 scf7180002755018 99.73 True fake: scaffold gap size wrong estimation (local) 2070198 2073250 1317250 1314197 CM091766.1 scf7180002755018 99.18 True local misassembly 2059798 2069892 1327793 1317671 CM091766.1 scf7180002755018 98.93 True relocation, scaffold gap is present, inconsistency = -13607 2052544 2059701 1348660 1341497 CM091766.1 scf7180002755018 99.19 True fake: scaffold gap size wrong estimation (local) 2043616 2052535 1359776 1350850 CM091766.1 scf7180002755018 98.77 True fake: scaffold gap size wrong estimation (local) 2012968 2043456 1392156 1361612 CM091766.1 scf7180002755018 98.91 True relocation, scaffold gap is present, inconsistency = -30028 2006096 2012773 1429063 1422379 CM091766.1 scf7180002755018 98.73 True indel: indel (<= 5bp) 1973245 2006031 1461887 1429131 CM091766.1 scf7180002755018 99.16 True relocation, scaffold gap is present, inconsistency = -30025 1902129 1973241 1562946 1491916 CM091766.1 scf7180002755018 99.24 True local misassembly 1901179 1901877 1563740 1563029 CM091766.1 scf7180002755018 97.89 True relocation, scaffold gap is present, inconsistency = -60364 1900202 1900884 1625081 1624399 CM091766.1 scf7180002755018 99.27 True indel: indel (> 5bp) 1830524 1899842 1694812 1625396 CM091766.1 scf7180002755018 99.47 True fake: scaffold gap size wrong estimation (local) 1822994 1830170 1706543 1698956 CM091766.1 scf7180002755018 99.53 True fake: scaffold gap size wrong estimation (local) 1794890 1822369 1734105 1706646 CM091766.1 scf7180002755018 99.17 True relocation, scaffold gap is present, inconsistency = -21718 1720086 1794614 1830663 1756099 CM091766.1 scf7180002755018 99.18 True relocation, scaffold gap is present, inconsistency = -61197 1683783 1720067 1928098 1891879 CM091766.1 scf7180002755018 99.08 True indel: indel (> 5bp) 1658596 1683759 1953264 1928152 CM091766.1 scf7180002755018 99.25 True relocation, scaffold gap is present, inconsistency = -53292 1639184 1658406 2026013 2006746 CM091766.1 scf7180002755018 99.23 True fake: scaffold gap size wrong estimation (local) 1570641 1639233 2099997 2031336 CM091766.1 scf7180002755018 99.15 True indel: indel (<= 5bp) 1541252 1570579 2129384 2100055 CM091766.1 scf7180002755018 99.48 True translocation, scaffold gap is present 3772082 3773164 2213635 2214717 CM091752.1 scf7180002755018 99.91 True relocation, scaffold gap is present, inconsistency = -7548 3766630 3771356 2215731 2220459 CM091752.1 scf7180002755018 99.53 True translocation, scaffold gap is present 1539895 1540993 2222001 2220903 CM091766.1 scf7180002755018 100.0 True local misassembly 1537566 1538971 2224332 2222927 CM091766.1 scf7180002755018 99.29 True indel: indel (<= 5bp) 1536837 1537430 2225063 2224470 CM091766.1 scf7180002755018 98.99 True fake: scaffold gap size wrong estimation (local) 1534922 1535972 2232273 2231223 CM091766.1 scf7180002755018 99.81 True indel: indel (<= 5bp) 1532331 1534595 2234867 2232603 CM091766.1 scf7180002755018 99.6 True indel: indel (<= 5bp) 1531653 1532301 2235548 2234900 CM091766.1 scf7180002755018 99.38 True indel: indel (<= 5bp) 1531041 1531652 2236162 2235551 CM091766.1 scf7180002755018 99.84 True indel: indel (> 5bp) 1529793 1530787 2237423 2236429 CM091766.1 scf7180002755018 99.5 True indel: indel (<= 5bp) 1527858 1529792 2239359 2237425 CM091766.1 scf7180002755018 99.9 True indel: indel (> 5bp) 1526547 1527430 2240649 2239766 CM091766.1 scf7180002755018 99.66 True indel: indel (<= 5bp) 1525658 1526296 2241543 2240905 CM091766.1 scf7180002755018 99.69 True indel: indel (<= 5bp) 1524984 1525654 2242214 2241544 CM091766.1 scf7180002755018 99.4 True local misassembly 1522954 1524151 2244223 2243026 CM091766.1 scf7180002755018 99.75 True indel: indel (<= 5bp) 1522361 1522952 2244815 2244224 CM091766.1 scf7180002755018 98.99 True indel: indel (<= 5bp) 1521350 1521893 2245828 2245285 CM091766.1 scf7180002755018 99.45 True indel: indel (<= 5bp) 1520428 1521349 2246751 2245830 CM091766.1 scf7180002755018 99.67 True local misassembly 1517363 1519892 2249816 2247287 CM091766.1 scf7180002755018 99.76 True relocation, scaffold gap is present, inconsistency = -15154 1408375 1517349 2373967 2264984 CM091766.1 scf7180002755018 99.44 True relocation, scaffold gap is present, inconsistency = -69475 1335265 1408185 2516390 2443632 CM091766.1 scf7180002755018 99.11 True fake: scaffold gap size wrong estimation (local) 1334369 1335181 2518877 2518059 CM091766.1 scf7180002755018 98.86 True fake: scaffold gap size wrong estimation (local) 1320794 1334039 2532606 2519334 CM091766.1 scf7180002755018 99.56 True fake: scaffold gap size wrong estimation (local) 1291515 1320655 2563022 2534167 CM091766.1 scf7180002755018 98.67 True relocation, scaffold gap is present, inconsistency = -26456 825063 1291469 3055120 2589524 CM091766.1 scf7180002755018 99.21 True fake: scaffold gap size wrong estimation (extensive) 811072 825029 3076516 3062558 CM091766.1 scf7180002755018 99.65 True CONTIG scf7180002755018 3076516 misassembled 3879553 3881400 646 2493 CM091761.1 scf7180002755019 99.46 True indel: indel (<= 5bp) 3881403 3881932 2498 3027 CM091761.1 scf7180002755019 99.62 True indel: indel (<= 5bp) 3881937 3882955 3033 4051 CM091761.1 scf7180002755019 99.51 True local misassembly 3883999 3885393 4491 5885 CM091761.1 scf7180002755019 99.5 True fake: scaffold gap size wrong estimation (local) 3885394 3886793 5919 7318 CM091761.1 scf7180002755019 99.57 True indel: indel (<= 5bp) 3886795 3888609 7319 9133 CM091761.1 scf7180002755019 99.5 True local misassembly 3889517 3891143 10043 11669 CM091761.1 scf7180002755019 99.26 True local misassembly 3892169 3893048 12634 13513 CM091761.1 scf7180002755019 99.2 True indel: stretch of mismatches 3893340 3894600 13805 15065 CM091761.1 scf7180002755019 99.29 True fake: scaffold gap size wrong estimation (local) 3895636 3975943 16177 96410 CM091761.1 scf7180002755019 99.34 True fake: scaffold gap size wrong estimation (local) 3976065 3999945 96561 120442 CM091761.1 scf7180002755019 99.36 True indel: indel (<= 5bp) 4000038 4044978 120538 165451 CM091761.1 scf7180002755019 98.99 True translocation 3595582 3596709 165452 166578 CM091754.1 scf7180002755019 99.3 True translocation 886689 904385 166696 184377 CM091760.1 scf7180002755019 99.78 True fake: scaffold gap size wrong estimation (local) 904399 915752 185105 196096 CM091760.1 scf7180002755019 96.74 True fake: scaffold gap size wrong estimation (local) 916228 932179 198900 214844 CM091760.1 scf7180002755019 99.6 True indel: indel (> 5bp) 932277 964260 214913 246876 CM091760.1 scf7180002755019 99.85 True relocation, scaffold gap is present, inconsistency = -39599 943832 944368 266047 266583 CM091760.1 scf7180002755019 100.0 True fake: scaffold gap size wrong estimation (local) 964272 1010980 286603 333326 CM091760.1 scf7180002755019 99.79 True fake: scaffold gap size wrong estimation (local) 1011026 1014790 333389 337184 CM091760.1 scf7180002755019 98.37 True fake: scaffold gap size wrong estimation (local) 1014891 1016849 337288 339184 CM091760.1 scf7180002755019 96.49 True fake: scaffold gap size wrong estimation (local) 1017090 1047396 339205 369326 CM091760.1 scf7180002755019 97.38 True fake: scaffold gap size wrong estimation (local) 1047402 1055216 370789 378533 CM091760.1 scf7180002755019 98.87 True fake: not a misassembly (possible transposable element) 4500682 4502371 378595 380284 CM091768.1 scf7180002755019 99.53 True fake: not a misassembly (possible transposable element) 1055957 1066242 380285 390577 CM091760.1 scf7180002755019 99.62 True translocation, scaffold gap is present 4503054 4504740 391562 393252 CM091768.1 scf7180002755019 99.94 True relocation, scaffold gap is present, inconsistency = -9722 4502536 4503072 400770 401306 CM091768.1 scf7180002755019 100.0 True translocation, scaffold gap is present 1066363 1069661 401327 404627 CM091760.1 scf7180002755019 99.42 True fake: scaffold gap size wrong estimation (local) 1070654 1083419 407769 420110 CM091760.1 scf7180002755019 96.11 True fake: scaffold gap size wrong estimation (local) 1083423 1122714 422343 460822 CM091760.1 scf7180002755019 97.19 True fake: scaffold gap size wrong estimation (local) 1122712 1194362 464027 533284 CM091760.1 scf7180002755019 95.81 True fake: scaffold gap size wrong estimation (local) 1194493 1196718 533415 535644 CM091760.1 scf7180002755019 99.6 True indel: indel (<= 5bp) 1196811 1239308 535742 578374 CM091760.1 scf7180002755019 99.64 True fake: scaffold gap size wrong estimation (local) 1239555 1361909 578601 700955 CM091760.1 scf7180002755019 99.64 True fake: scaffold gap size wrong estimation (local) 1362110 1373878 701117 712903 CM091760.1 scf7180002755019 99.73 True fake: scaffold gap size wrong estimation (local) 1373805 1388953 713338 728511 CM091760.1 scf7180002755019 99.61 True fake: scaffold gap size wrong estimation (local) 1388951 1467203 732145 810332 CM091760.1 scf7180002755019 98.18 True relocation, scaffold gap is present, inconsistency = -24495 1467705 1610448 835329 977909 CM091760.1 scf7180002755019 99.38 True relocation, scaffold gap is present, inconsistency = -10125 1610475 1793652 988061 1171269 CM091760.1 scf7180002755019 99.67 True relocation, scaffold gap is present, inconsistency = -55223 1744625 1745152 1177465 1178026 CM091760.1 scf7180002755019 98.47 True fake: scaffold gap size wrong estimation (local) 1764781 1765295 1197682 1198196 CM091760.1 scf7180002755019 100.0 True fake: scaffold gap size wrong estimation (local) 1794124 1819471 1226054 1251066 CM091760.1 scf7180002755019 98.42 True relocation, scaffold gap is present, inconsistency = -12533 1819510 1830668 1263638 1274785 CM091760.1 scf7180002755019 99.38 True fake: scaffold gap size wrong estimation (local) 1830814 1948311 1275146 1392639 CM091760.1 scf7180002755019 99.65 True fake: scaffold gap size wrong estimation (local) 1948533 2013025 1392810 1456592 CM091760.1 scf7180002755019 98.42 True fake: scaffold gap size wrong estimation (extensive) 2013072 2018642 1464665 1470250 CM091760.1 scf7180002755019 99.69 True fake: scaffold gap size wrong estimation (local) 2018787 2019452 1470409 1471074 CM091760.1 scf7180002755019 100.0 True indel: indel (<= 5bp) 2019453 2021591 1471078 1473216 CM091760.1 scf7180002755019 99.91 True fake: scaffold gap size wrong estimation (local) 2021724 2022780 1473364 1474420 CM091760.1 scf7180002755019 99.91 True fake: scaffold gap size wrong estimation (local) 2024740 2030819 1475437 1481467 CM091760.1 scf7180002755019 98.73 True fake: scaffold gap size wrong estimation (local) 2031417 2055383 1482437 1506582 CM091760.1 scf7180002755019 95.92 True fake: scaffold gap size wrong estimation (local) 2056820 2057820 1506981 1507981 CM091760.1 scf7180002755019 99.8 True fake: scaffold gap size wrong estimation (local) 2057962 2058953 1509480 1510471 CM091760.1 scf7180002755019 99.29 True indel: indel (> 5bp) 2059011 2060795 1510536 1512320 CM091760.1 scf7180002755019 99.78 True indel: indel (<= 5bp) 2060796 2061731 1512322 1513257 CM091760.1 scf7180002755019 99.79 True indel: indel (<= 5bp) 2061732 2063134 1513259 1514661 CM091760.1 scf7180002755019 99.93 True indel: indel (<= 5bp) 2063136 2063930 1514662 1515456 CM091760.1 scf7180002755019 100.0 True indel: indel (> 5bp) 2063945 2065078 1515457 1516590 CM091760.1 scf7180002755019 97.8 True local misassembly 2065822 2067366 1516910 1518454 CM091760.1 scf7180002755019 98.25 True indel: indel (<= 5bp) 2067368 2069460 1518455 1520547 CM091760.1 scf7180002755019 99.86 True fake: scaffold gap size wrong estimation (local) 2069890 2073695 1524220 1528025 CM091760.1 scf7180002755019 98.74 True fake: scaffold gap size wrong estimation (local) 2075114 2078000 1528458 1531344 CM091760.1 scf7180002755019 99.76 True indel: indel (<= 5bp) 2078394 2079105 1531736 1532447 CM091760.1 scf7180002755019 100.0 True indel: indel (> 5bp) 2079225 2079847 1532575 1533197 CM091760.1 scf7180002755019 97.59 True indel: indel (<= 5bp) 2080207 2080769 1533561 1534123 CM091760.1 scf7180002755019 99.64 True indel: indel (<= 5bp) 2080770 2081701 1534125 1535056 CM091760.1 scf7180002755019 99.68 True indel: indel (<= 5bp) 2081703 2082310 1535057 1535664 CM091760.1 scf7180002755019 99.84 True fake: scaffold gap size wrong estimation (local) 2083047 2083778 1536316 1537047 CM091760.1 scf7180002755019 99.86 True indel: indel (> 5bp) 2083814 2084575 1537077 1537838 CM091760.1 scf7180002755019 99.87 True indel: indel (<= 5bp) 2084577 2086287 1537839 1539549 CM091760.1 scf7180002755019 99.82 True fake: scaffold gap size wrong estimation (local) 2088505 2089082 1541800 1542377 CM091760.1 scf7180002755019 100.0 True fake: scaffold gap size wrong estimation (local) 2090066 2090797 1542768 1543499 CM091760.1 scf7180002755019 99.18 True indel: indel (<= 5bp) 2090799 2092671 1543500 1545372 CM091760.1 scf7180002755019 99.79 True fake: scaffold gap size wrong estimation (local) 2093945 2094923 1546690 1547668 CM091760.1 scf7180002755019 99.9 True indel: indel (<= 5bp) 2094925 2096918 1547669 1549662 CM091760.1 scf7180002755019 98.7 True indel: indel (<= 5bp) 2096920 2098763 1549663 1551506 CM091760.1 scf7180002755019 97.23 True indel: indel (<= 5bp) 2098764 2100388 1551508 1553132 CM091760.1 scf7180002755019 99.75 True fake: scaffold gap size wrong estimation (local) 2101079 2101848 1553819 1554588 CM091760.1 scf7180002755019 99.87 True local misassembly 2102660 2104151 1554947 1556438 CM091760.1 scf7180002755019 98.59 True fake: scaffold gap size wrong estimation (local) 2104161 2114259 1557439 1567196 CM091760.1 scf7180002755019 96.35 True fake: scaffold gap size wrong estimation (local) 2114315 2123202 1572884 1581771 CM091760.1 scf7180002755019 98.99 True fake: scaffold gap size wrong estimation (local) 2123215 2148661 1583097 1608286 CM091760.1 scf7180002755019 98.11 True fake: scaffold gap size wrong estimation (local) 2148687 2149188 1610470 1610971 CM091760.1 scf7180002755019 99.8 True fake: scaffold gap size wrong estimation (local) 2149189 2150117 1610994 1611922 CM091760.1 scf7180002755019 99.89 True fake: scaffold gap size wrong estimation (local) 2151530 2153065 1613306 1614841 CM091760.1 scf7180002755019 99.67 True indel: indel (<= 5bp) 2153413 2157374 1615193 1619154 CM091760.1 scf7180002755019 99.92 True indel: indel (<= 5bp) 2157394 2161515 1619173 1623294 CM091760.1 scf7180002755019 99.93 True fake: scaffold gap size wrong estimation (local) 2161666 2162199 1623484 1624017 CM091760.1 scf7180002755019 100.0 True indel: indel (<= 5bp) 2162200 2162843 1624021 1624664 CM091760.1 scf7180002755019 97.36 True fake: scaffold gap size wrong estimation (local) 2164849 2206430 1625262 1666871 CM091760.1 scf7180002755019 99.79 True relocation, scaffold gap is present, inconsistency = -11116 2206436 2227603 1677993 1699224 CM091760.1 scf7180002755019 99.62 True fake: scaffold gap size wrong estimation (local) 2227772 2238935 1699386 1710618 CM091760.1 scf7180002755019 99.65 True fake: scaffold gap size wrong estimation (local) 2239127 2239718 1710805 1711396 CM091760.1 scf7180002755019 99.66 True fake: scaffold gap size wrong estimation (local) 2239719 2241229 1711412 1712922 CM091760.1 scf7180002755019 99.6 True indel: indel (<= 5bp) 2241230 2242626 1712924 1714320 CM091760.1 scf7180002755019 99.86 True local misassembly 2243169 2246024 1714321 1717176 CM091760.1 scf7180002755019 99.09 True indel: indel (<= 5bp) 2246025 2247869 1717179 1719023 CM091760.1 scf7180002755019 99.89 True indel: indel (<= 5bp) 2247870 2249438 1719027 1720595 CM091760.1 scf7180002755019 98.66 True fake: scaffold gap size wrong estimation (local) 2249667 2250683 1720854 1721870 CM091760.1 scf7180002755019 99.51 True fake: scaffold gap size wrong estimation (local) 2251080 2251937 1722312 1723169 CM091760.1 scf7180002755019 99.77 True indel: indel (<= 5bp) 2251942 2252752 1723170 1723980 CM091760.1 scf7180002755019 99.63 True fake: scaffold gap size wrong estimation (local) 2252925 2253757 1724155 1724987 CM091760.1 scf7180002755019 99.76 True indel: indel (<= 5bp) 2253758 2255584 1724989 1726815 CM091760.1 scf7180002755019 100.0 True indel: indel (<= 5bp) 2255585 2256576 1726818 1727809 CM091760.1 scf7180002755019 99.7 True fake: scaffold gap size wrong estimation (local) 2257887 2259064 1728264 1729441 CM091760.1 scf7180002755019 99.92 True indel: indel (<= 5bp) 2259066 2260610 1729442 1730986 CM091760.1 scf7180002755019 99.74 True indel: indel (<= 5bp) 2260616 2261666 1730987 1732037 CM091760.1 scf7180002755019 100.0 True indel: indel (<= 5bp) 2261854 2262704 1732222 1733072 CM091760.1 scf7180002755019 99.65 True local misassembly 2264401 2265420 1733073 1734092 CM091760.1 scf7180002755019 98.04 True indel: indel (<= 5bp) 2265421 2267687 1734094 1736360 CM091760.1 scf7180002755019 99.96 True indel: indel (<= 5bp) 2267688 2269972 1736365 1738649 CM091760.1 scf7180002755019 99.21 True fake: scaffold gap size wrong estimation (local) 2270455 2274192 1739117 1742854 CM091760.1 scf7180002755019 98.77 True fake: scaffold gap size wrong estimation (local) 2274193 2275323 1742877 1744007 CM091760.1 scf7180002755019 100.0 True fake: scaffold gap size wrong estimation (local) 2275514 2278660 1744219 1747365 CM091760.1 scf7180002755019 99.08 True indel: indel (<= 5bp) 2278661 2279232 1747367 1747938 CM091760.1 scf7180002755019 98.95 True indel: indel (<= 5bp) 2279234 2279888 1747939 1748593 CM091760.1 scf7180002755019 99.85 True indel: indel (<= 5bp) 2279890 2281012 1748594 1749716 CM091760.1 scf7180002755019 99.82 True local misassembly 2281614 2283279 1750318 1751983 CM091760.1 scf7180002755019 99.76 True fake: scaffold gap size wrong estimation (local) 2283947 2314922 1755946 1786930 CM091760.1 scf7180002755019 99.73 True relocation, scaffold gap is present, inconsistency = -24763 2315601 2366796 1812372 1863577 CM091760.1 scf7180002755019 99.76 True fake: scaffold gap size wrong estimation (local) 2368940 2390147 1867006 1888202 CM091760.1 scf7180002755019 99.85 True CONTIG scf7180002755019 1905874 misassembled 5496938 5715983 222 219357 CM091758.1 scf7180002755020 99.49 True fake: scaffold gap size wrong estimation (extensive) 5716000 5721966 228007 233968 CM091758.1 scf7180002755020 99.6 True fake: scaffold gap size wrong estimation (local) 5722175 5823458 234150 335023 CM091758.1 scf7180002755020 99.04 True fake: scaffold gap size wrong estimation (local) 5823475 5841742 337274 355551 CM091758.1 scf7180002755020 99.28 True local misassembly 5861976 5862473 370292 370792 CM091758.1 scf7180002755020 97.41 True relocation, scaffold gap is present, inconsistency = -14584 5862498 5886520 385401 409438 CM091758.1 scf7180002755020 99.54 True relocation, scaffold gap is present, inconsistency = -23590 5886530 5939509 433038 485612 CM091758.1 scf7180002755020 98.46 True relocation, scaffold gap is present, inconsistency = -13128 5939550 5955068 498781 514377 CM091758.1 scf7180002755020 99.26 True fake: scaffold gap size wrong estimation (extensive) 5955146 5956264 522311 523429 CM091758.1 scf7180002755020 99.55 True indel: indel (<= 5bp) 5956266 5957208 523430 524372 CM091758.1 scf7180002755020 99.68 True indel: indel (<= 5bp) 5957539 5958167 524698 525326 CM091758.1 scf7180002755020 100.0 True indel: indel (<= 5bp) 5958168 5959443 525328 526603 CM091758.1 scf7180002755020 100.0 True fake: scaffold gap size wrong estimation (local) 5961713 5963089 527430 528806 CM091758.1 scf7180002755020 99.78 True indel: indel (<= 5bp) 5963090 5963873 528808 529591 CM091758.1 scf7180002755020 99.62 True indel: indel (<= 5bp) 5963874 5964654 529594 530374 CM091758.1 scf7180002755020 100.0 True indel: indel (<= 5bp) 5964820 5965401 530538 531119 CM091758.1 scf7180002755020 99.66 True indel: stretch of mismatches 5965692 5968735 531410 534453 CM091758.1 scf7180002755020 99.74 True indel: indel (<= 5bp) 5968736 5969404 534455 535123 CM091758.1 scf7180002755020 99.7 True indel: indel (<= 5bp) 5969407 5971233 535124 536950 CM091758.1 scf7180002755020 99.73 True fake: scaffold gap size wrong estimation (local) 5971470 5991653 539465 559665 CM091758.1 scf7180002755020 99.51 True fake: scaffold gap size wrong estimation (extensive) 5992023 6024523 569133 601701 CM091758.1 scf7180002755020 99.6 True fake: scaffold gap size wrong estimation (local) 6024526 6045334 607755 628569 CM091758.1 scf7180002755020 99.62 True relocation, scaffold gap is present, inconsistency = -17407 6045326 6102445 645968 703130 CM091758.1 scf7180002755020 99.63 True relocation, scaffold gap is present, inconsistency = -18526 6102490 6120383 721701 739590 CM091758.1 scf7180002755020 99.63 True relocation, scaffold gap is present, inconsistency = -17711 6120291 6156140 757209 792899 CM091758.1 scf7180002755020 98.94 True fake: scaffold gap size wrong estimation (local) 6156129 6166085 796284 806301 CM091758.1 scf7180002755020 99.16 True fake: scaffold gap size wrong estimation (local) 6167006 6222609 807339 862135 CM091758.1 scf7180002755020 98.17 True fake: scaffold gap size wrong estimation (extensive) 6223064 6314205 872536 963679 CM091758.1 scf7180002755020 99.75 True relocation, scaffold gap is present, inconsistency = -37852 6295595 6296128 982921 983456 CM091758.1 scf7180002755020 100.0 True fake: scaffold gap size wrong estimation (local) 6314277 6344535 1001276 1031948 CM091758.1 scf7180002755020 98.63 True indel: indel (> 5bp) 6344576 6363443 1031976 1050862 CM091758.1 scf7180002755020 99.31 True relocation, scaffold gap is present, inconsistency = -36736 6363660 6373162 1087815 1097561 CM091758.1 scf7180002755020 96.42 True fake: scaffold gap size wrong estimation (local) 6373748 6397710 1098344 1122380 CM091758.1 scf7180002755020 99.1 True fake: scaffold gap size wrong estimation (local) 6403388 6423412 1128076 1148118 CM091758.1 scf7180002755020 99.24 True indel: indel (> 5bp) 6423462 6551129 1148177 1275832 CM091758.1 scf7180002755020 99.76 True fake: scaffold gap size wrong estimation (local) 6551433 6567328 1276193 1291848 CM091758.1 scf7180002755020 98.02 True relocation, scaffold gap is present, inconsistency = -12876 6567342 6722393 1304738 1459691 CM091758.1 scf7180002755020 99.25 True relocation, scaffold gap is present, inconsistency = -65021 6673923 6674390 1476242 1476766 CM091758.1 scf7180002755020 96.49 True fake: scaffold gap size wrong estimation (local) 6722681 6748259 1524448 1549862 CM091758.1 scf7180002755020 97.3 True relocation, scaffold gap is present, inconsistency = -13476 6748182 6761376 1563261 1576395 CM091758.1 scf7180002755020 98.64 True fake: scaffold gap size wrong estimation (extensive) 6761353 6781733 1584736 1605132 CM091758.1 scf7180002755020 99.23 True relocation, scaffold gap is present, inconsistency = -10903 6781759 6788049 1616061 1622353 CM091758.1 scf7180002755020 99.47 True fake: scaffold gap size wrong estimation (local) 6788174 6824306 1623596 1659766 CM091758.1 scf7180002755020 98.66 True relocation, scaffold gap is present, inconsistency = -33704 6824182 6839840 1693346 1708935 CM091758.1 scf7180002755020 98.64 True fake: scaffold gap size wrong estimation (local) 6841774 6843116 1710652 1712020 CM091758.1 scf7180002755020 97.71 True indel: indel (> 5bp) 6843213 6898085 1712129 1766901 CM091758.1 scf7180002755020 99.08 True CONTIG scf7180002755020 1766901 misassembled 5252427 5256682 1 4262 CM091760.1 scf7180002755021 99.16 True fake: scaffold gap size wrong estimation (local) 5256830 5257595 5338 6103 CM091760.1 scf7180002755021 97.0 True fake: scaffold gap size wrong estimation (local) 5259163 5339215 6874 87021 CM091760.1 scf7180002755021 99.37 True relocation, scaffold gap is present, inconsistency = -60188 5313684 5314178 121678 122200 CM091760.1 scf7180002755021 97.96 True fake: scaffold gap size wrong estimation (local) 5323917 5324432 131939 132490 CM091760.1 scf7180002755021 96.4 True fake: scaffold gap size wrong estimation (local) 5339633 5347278 147102 154744 CM091760.1 scf7180002755021 99.45 True fake: scaffold gap size wrong estimation (extensive) 5347272 5353914 162324 168959 CM091760.1 scf7180002755021 98.93 True fake: scaffold gap size wrong estimation (local) 5354665 5359890 171744 176962 CM091760.1 scf7180002755021 99.18 True fake: scaffold gap size wrong estimation (local) 5360144 5450033 177215 267466 CM091760.1 scf7180002755021 98.68 True local misassembly 5450096 5452795 267625 270325 CM091760.1 scf7180002755021 99.48 True fake: scaffold gap size wrong estimation (local) 5452903 5453903 270422 271443 CM091760.1 scf7180002755021 99.4 True indel: indel (> 5bp) 5453950 5454454 271481 271985 CM091760.1 scf7180002755021 99.01 True CONTIG scf7180002755021 271985 misassembled 13424115 13425186 27 1098 CM091759.1 scf7180002755022 96.18 True indel: indel (> 5bp) 13425331 13437048 1235 12990 CM091759.1 scf7180002755022 99.0 True indel: indel (> 5bp) 13437090 13449750 13082 25812 CM091759.1 scf7180002755022 98.67 True relocation, scaffold gap is present, inconsistency = -16287 13449754 13492036 42103 83847 CM091759.1 scf7180002755022 97.85 True fake: scaffold gap size wrong estimation (local) 13492152 13511636 83957 103510 CM091759.1 scf7180002755022 99.18 True indel: indel (> 5bp) 13511674 13613190 103560 205387 CM091759.1 scf7180002755022 98.97 True indel: indel (<= 5bp) 13613206 13656023 205408 248249 CM091759.1 scf7180002755022 99.77 True fake: scaffold gap size wrong estimation (local) 13656447 13688129 248797 280110 CM091759.1 scf7180002755022 98.68 True relocation, scaffold gap is present, inconsistency = -19285 13688116 13712791 299382 324092 CM091759.1 scf7180002755022 99.59 True fake: scaffold gap size wrong estimation (local) 13713057 13724503 326057 337507 CM091759.1 scf7180002755022 99.41 True fake: scaffold gap size wrong estimation (extensive) 13724779 13758255 346843 380326 CM091759.1 scf7180002755022 99.44 True relocation, scaffold gap is present, inconsistency = -33654 13758292 13828065 414017 483855 CM091759.1 scf7180002755022 99.46 True relocation, scaffold gap is present, inconsistency = -13493 13828316 13831613 497599 500892 CM091759.1 scf7180002755022 98.73 True fake: scaffold gap size wrong estimation (local) 13833313 13835073 504018 505778 CM091759.1 scf7180002755022 99.6 True local misassembly 13835774 13836475 506146 506847 CM091759.1 scf7180002755022 98.72 True indel: indel (<= 5bp) 13836478 13837306 506848 507676 CM091759.1 scf7180002755022 99.76 True indel: indel (<= 5bp) 13837307 13838642 507678 509013 CM091759.1 scf7180002755022 99.85 True indel: stretch of mismatches 13838951 13839740 509322 510111 CM091759.1 scf7180002755022 100.0 True fake: scaffold gap size wrong estimation (local) 13840267 13857393 510650 527830 CM091759.1 scf7180002755022 99.17 True fake: scaffold gap size wrong estimation (extensive) 13857620 13912172 536596 591195 CM091759.1 scf7180002755022 99.46 True fake: scaffold gap size wrong estimation (local) 13912950 13923901 591488 602205 CM091759.1 scf7180002755022 97.24 True indel: indel (> 5bp) 13924055 13938090 602389 616428 CM091759.1 scf7180002755022 98.96 True relocation, scaffold gap is present, inconsistency = -23502 13938992 13948905 640832 650736 CM091759.1 scf7180002755022 99.45 True relocation, scaffold gap is present, inconsistency = -10052 13949092 14023650 660975 735448 CM091759.1 scf7180002755022 99.0 True indel: indel (> 5bp) 14023678 14035665 735497 747494 CM091759.1 scf7180002755022 99.3 True relocation, scaffold gap is present, inconsistency = -20264 14035889 14045052 767982 777154 CM091759.1 scf7180002755022 99.61 True indel: indel (> 5bp) 14045105 14055914 777197 788041 CM091759.1 scf7180002755022 99.18 True fake: scaffold gap size wrong estimation (local) 14056316 14087536 792554 823579 CM091759.1 scf7180002755022 98.44 True indel: indel (> 5bp) 14087620 14094799 823682 830883 CM091759.1 scf7180002755022 99.01 True fake: scaffold gap size wrong estimation (local) 14094819 14198442 836453 940803 CM091759.1 scf7180002755022 98.82 True fake: scaffold gap size wrong estimation (local) 14198677 14280497 941047 1022936 CM091759.1 scf7180002755022 99.36 True relocation, scaffold gap is present, inconsistency = -48445 14280524 14300142 1071408 1091046 CM091759.1 scf7180002755022 99.61 True relocation, scaffold gap is present, inconsistency = -19243 14300209 14481755 1110356 1292011 CM091759.1 scf7180002755022 99.62 True relocation, scaffold gap is present, inconsistency = -32396 14481772 14508125 1324424 1350902 CM091759.1 scf7180002755022 99.41 True fake: scaffold gap size wrong estimation (local) 14508392 14522405 1351994 1366020 CM091759.1 scf7180002755022 99.66 True fake: scaffold gap size wrong estimation (local) 14522299 14587514 1367680 1431865 CM091759.1 scf7180002755022 97.81 True fake: scaffold gap size wrong estimation (local) 14587526 14616972 1435115 1464612 CM091759.1 scf7180002755022 99.56 True fake: scaffold gap size wrong estimation (local) 14617149 14634280 1467865 1484999 CM091759.1 scf7180002755022 99.66 True fake: scaffold gap size wrong estimation (local) 14634262 14721807 1491593 1579207 CM091759.1 scf7180002755022 99.55 True fake: scaffold gap size wrong estimation (local) 14722566 14773220 1579991 1630621 CM091759.1 scf7180002755022 99.53 True fake: scaffold gap size wrong estimation (local) 14773290 14828457 1632692 1687921 CM091759.1 scf7180002755022 99.51 True fake: scaffold gap size wrong estimation (local) 14829062 14900186 1688078 1758744 CM091759.1 scf7180002755022 98.67 True indel: indel (> 5bp) 14900333 15019879 1758879 1878474 CM091759.1 scf7180002755022 99.32 True fake: scaffold gap size wrong estimation (local) 15020060 15066103 1878597 1924686 CM091759.1 scf7180002755022 99.42 True fake: scaffold gap size wrong estimation (local) 15066224 15080835 1924794 1939092 CM091759.1 scf7180002755022 97.56 True fake: scaffold gap size wrong estimation (local) 15081153 15104911 1943659 1967517 CM091759.1 scf7180002755022 99.33 True fake: scaffold gap size wrong estimation (local) 15105015 15185283 1967611 2047954 CM091759.1 scf7180002755022 98.51 True fake: scaffold gap size wrong estimation (local) 15185272 15200445 2049635 2064754 CM091759.1 scf7180002755022 99.03 True fake: scaffold gap size wrong estimation (extensive) 15200540 15218803 2074467 2092772 CM091759.1 scf7180002755022 99.33 True fake: scaffold gap size wrong estimation (local) 15219619 15263626 2093746 2137849 CM091759.1 scf7180002755022 99.56 True fake: scaffold gap size wrong estimation (local) 15264979 15303895 2138297 2179744 CM091759.1 scf7180002755022 98.35 True relocation, scaffold gap is present, inconsistency = -19917 15303930 15337555 2199696 2233344 CM091759.1 scf7180002755022 99.65 True relocation, scaffold gap is present, inconsistency = -19568 15337633 15360935 2252990 2276305 CM091759.1 scf7180002755022 99.54 True indel: indel (> 5bp) 15360949 15476350 2276306 2391813 CM091759.1 scf7180002755022 99.6 True relocation, scaffold gap is present, inconsistency = -21858 15476947 15503401 2414268 2440740 CM091759.1 scf7180002755022 99.71 True relocation, scaffold gap is present, inconsistency = -26723 15503398 15515340 2467460 2479418 CM091759.1 scf7180002755022 99.36 True translocation 5321142 5370071 2528363 2479419 CM091761.1 scf7180002755022 99.85 True fake: scaffold gap size wrong estimation (local) 5311073 5320414 2538301 2528952 CM091761.1 scf7180002755022 99.72 True fake: scaffold gap size wrong estimation (local) 5280947 5311087 2571142 2541001 CM091761.1 scf7180002755022 99.79 True relocation, scaffold gap is present, inconsistency = -15229 5261630 5280575 2605718 2586743 CM091761.1 scf7180002755022 99.2 True indel: indel (> 5bp) 5253121 5261490 2614118 2605788 CM091761.1 scf7180002755022 99.15 True relocation, scaffold gap is present, inconsistency = -14072 5203867 5253115 2677157 2628196 CM091761.1 scf7180002755022 98.24 True fake: scaffold gap size wrong estimation (extensive) 5168048 5203827 2719811 2684496 CM091761.1 scf7180002755022 97.96 True relocation, scaffold gap is present, inconsistency = -13855 5162079 5168029 2739634 2733685 CM091761.1 scf7180002755022 99.5 True local misassembly 5119896 5161747 2782125 2740261 CM091761.1 scf7180002755022 99.46 True relocation, scaffold gap is present, inconsistency = -34214 5082442 5119375 2853776 2816860 CM091761.1 scf7180002755022 99.4 True indel: indel (<= 5bp) 5076176 5082370 2860057 2853851 CM091761.1 scf7180002755022 98.82 True indel: indel (> 5bp) 5059827 5076100 2875824 2860162 CM091761.1 scf7180002755022 95.15 True fake: scaffold gap size wrong estimation (local) 5057780 5059254 2880089 2878615 CM091761.1 scf7180002755022 99.73 True local misassembly 5055773 5056904 2882084 2880953 CM091761.1 scf7180002755022 99.2 True local misassembly 5054092 5054895 2883339 2882536 CM091761.1 scf7180002755022 98.76 True fake: scaffold gap size wrong estimation (local) 5051621 5053797 2890173 2887986 CM091761.1 scf7180002755022 98.86 True fake: scaffold gap size wrong estimation (local) 5027630 5046820 2915517 2896494 CM091761.1 scf7180002755022 97.91 True fake: scaffold gap size wrong estimation (local) 5010692 5027614 2936142 2919315 CM091761.1 scf7180002755022 98.74 True fake: scaffold gap size wrong estimation (local) 5007511 5009782 2938430 2936163 CM091761.1 scf7180002755022 99.34 True fake: scaffold gap size wrong estimation (local) 4997436 5007276 2948787 2938957 CM091761.1 scf7180002755022 99.22 True fake: scaffold gap size wrong estimation (extensive) 4988208 4997196 2966409 2957407 CM091761.1 scf7180002755022 99.24 True fake: scaffold gap size wrong estimation (local) 4979163 4987742 2975273 2966681 CM091761.1 scf7180002755022 99.35 True fake: scaffold gap size wrong estimation (extensive) 4946745 4979151 3016047 2983775 CM091761.1 scf7180002755022 98.95 True relocation, scaffold gap is present, inconsistency = -21541 4896966 4946656 3087294 3037677 CM091761.1 scf7180002755022 98.77 True indel: indel (<= 5bp) 4895814 4896941 3088450 3087322 CM091761.1 scf7180002755022 98.2 True translocation 13508759 13517865 3097571 3088451 CM091753.1 scf7180002755022 99.21 True translocation, scaffold gap is present 4888628 4895474 3104436 3097592 CM091761.1 scf7180002755022 99.62 True translocation, scaffold gap is present 13483349 13508637 3137504 3112144 CM091753.1 scf7180002755022 98.48 True fake: scaffold gap size wrong estimation (local) 13467147 13482946 3156130 3140605 CM091753.1 scf7180002755022 97.88 True fake: scaffold gap size wrong estimation (local) 13450625 13467050 3175563 3159111 CM091753.1 scf7180002755022 99.44 True fake: scaffold gap size wrong estimation (extensive) 13434762 13450708 3199489 3183634 CM091753.1 scf7180002755022 98.69 True local misassembly 13436577 13437186 3202240 3201604 CM091753.1 scf7180002755022 98.16 True fake: scaffold gap size wrong estimation (local) 13395293 13434509 3242512 3203291 CM091753.1 scf7180002755022 99.64 True relocation, scaffold gap is present, inconsistency = -39557 13332641 13395267 3344794 3282095 CM091753.1 scf7180002755022 99.28 True CONTIG scf7180002755022 3344794 misassembled 1436488 1451039 101 14661 CM091761.1 scf7180002755023 99.86 True fake: scaffold gap size wrong estimation (local) 1452304 1481239 16280 45191 CM091761.1 scf7180002755023 99.2 True fake: scaffold gap size wrong estimation (local) 1481414 1553142 48010 119753 CM091761.1 scf7180002755023 99.64 True relocation, scaffold gap is present, inconsistency = -71473 1553212 1579096 191296 217130 CM091761.1 scf7180002755023 99.23 True fake: scaffold gap size wrong estimation (local) 1579316 1619077 220281 260060 CM091761.1 scf7180002755023 99.55 True relocation, scaffold gap is present, inconsistency = -22370 1627205 1640737 290558 304095 CM091761.1 scf7180002755023 99.48 True indel: indel (> 5bp) 1640893 1647640 304310 311058 CM091761.1 scf7180002755023 99.82 True relocation, scaffold gap is present, inconsistency = -15400 1647665 1659045 326483 337807 CM091761.1 scf7180002755023 99.0 True fake: scaffold gap size wrong estimation (local) 1659234 1672355 338021 350958 CM091761.1 scf7180002755023 98.09 True fake: scaffold gap size wrong estimation (local) 1672363 1676046 357216 360900 CM091761.1 scf7180002755023 99.59 True indel: indel (> 5bp) 1676215 1705429 361084 390055 CM091761.1 scf7180002755023 98.73 True fake: scaffold gap size wrong estimation (local) 1705578 1714538 390188 399180 CM091761.1 scf7180002755023 99.64 True indel: indel (> 5bp) 1714640 1744300 399288 428939 CM091761.1 scf7180002755023 99.49 True fake: scaffold gap size wrong estimation (local) 1746621 1749610 431997 434986 CM091761.1 scf7180002755023 99.93 True indel: indel (<= 5bp) 1749613 1750984 434987 436358 CM091761.1 scf7180002755023 100.0 True indel: indel (<= 5bp) 1750985 1753820 436360 439195 CM091761.1 scf7180002755023 99.79 True indel: indel (<= 5bp) 1754040 1754667 439419 440046 CM091761.1 scf7180002755023 99.68 True fake: scaffold gap size wrong estimation (local) 1755420 1756827 440819 442226 CM091761.1 scf7180002755023 98.79 True local misassembly 1758032 1764151 442227 448346 CM091761.1 scf7180002755023 99.26 True indel: indel (<= 5bp) 1764364 1765866 448563 450065 CM091761.1 scf7180002755023 99.93 True indel: indel (<= 5bp) 1766185 1766702 450385 450902 CM091761.1 scf7180002755023 99.81 True fake: scaffold gap size wrong estimation (local) 1767046 1771022 456891 460881 CM091761.1 scf7180002755023 99.1 True indel: indel (<= 5bp) 1771091 1779567 460954 469436 CM091761.1 scf7180002755023 99.73 True relocation, scaffold gap is present, inconsistency = -12305 1779585 1818252 481759 520428 CM091761.1 scf7180002755023 99.11 True relocation, scaffold gap is present, inconsistency = -19299 1818335 1864733 539810 585838 CM091761.1 scf7180002755023 98.7 True indel: indel (> 5bp) 1864803 1915925 585923 636573 CM091761.1 scf7180002755023 98.14 True fake: scaffold gap size wrong estimation (local) 1916742 1937632 636662 657507 CM091761.1 scf7180002755023 99.41 True relocation, inconsistency = 66708 2004347 2031807 657514 684791 CM091761.1 scf7180002755023 99.07 True fake: scaffold gap size wrong estimation (local) 2031868 2073401 687314 728934 CM091761.1 scf7180002755023 99.56 True fake: scaffold gap size wrong estimation (local) 2074353 2145845 729018 800456 CM091761.1 scf7180002755023 99.25 True fake: scaffold gap size wrong estimation (local) 2145872 2230957 804948 888634 CM091761.1 scf7180002755023 97.52 True fake: scaffold gap size wrong estimation (local) 2232056 2251373 893561 912911 CM091761.1 scf7180002755023 99.56 True fake: scaffold gap size wrong estimation (local) 2251684 2270041 913254 931603 CM091761.1 scf7180002755023 99.35 True fake: scaffold gap size wrong estimation (local) 2270145 2341603 931693 1003263 CM091761.1 scf7180002755023 99.44 True fake: scaffold gap size wrong estimation (local) 2342141 2370224 1006179 1034262 CM091761.1 scf7180002755023 99.65 True fake: scaffold gap size wrong estimation (local) 2370574 2374817 1039784 1044029 CM091761.1 scf7180002755023 99.86 True fake: scaffold gap size wrong estimation (local) 2374802 2392710 1048275 1066043 CM091761.1 scf7180002755023 98.84 True indel: indel (> 5bp) 2392796 2438389 1066070 1111713 CM091761.1 scf7180002755023 99.57 True indel: indel (> 5bp) 2438421 2487093 1111762 1159999 CM091761.1 scf7180002755023 98.45 True fake: scaffold gap size wrong estimation (local) 2487233 2509943 1160119 1182840 CM091761.1 scf7180002755023 99.63 True indel: indel (> 5bp) 2510009 2583553 1182889 1256462 CM091761.1 scf7180002755023 99.75 True fake: scaffold gap size wrong estimation (local) 2584532 2632357 1257487 1305294 CM091761.1 scf7180002755023 99.9 True relocation, inconsistency = 1824441 4456861 4459850 1308346 1305357 CM091761.1 scf7180002755023 99.03 True local misassembly 4454828 4456176 1309695 1308347 CM091761.1 scf7180002755023 99.26 True local misassembly 4452041 4454023 1312481 1310499 CM091761.1 scf7180002755023 99.6 True local misassembly 4438677 4451255 1325240 1313116 CM091761.1 scf7180002755023 95.69 True relocation, inconsistency = 177316 4629073 4630075 1325742 1326744 CM091761.1 scf7180002755023 99.4 True indel: indel (> 5bp) 4630076 4630787 1326756 1327467 CM091761.1 scf7180002755023 99.16 True indel: indel (> 5bp) 4630809 4632060 1327468 1328719 CM091761.1 scf7180002755023 99.92 True local misassembly 4632633 4633260 1328949 1329576 CM091761.1 scf7180002755023 99.04 True indel: indel (<= 5bp) 4633287 4635464 1329606 1331783 CM091761.1 scf7180002755023 99.22 True indel: indel (> 5bp) 4635662 4636212 1331962 1332512 CM091761.1 scf7180002755023 99.46 True relocation, scaffold gap is present, inconsistency = -2044163 2632445 2639083 1372908 1379696 CM091761.1 scf7180002755023 95.15 True relocation, scaffold gap is present, inconsistency = 1976606 4636225 4655015 1400232 1419041 CM091761.1 scf7180002755023 99.43 True translocation, scaffold gap is present 7162700 7171525 1419069 1427883 CM091753.1 scf7180002755023 99.25 True indel: indel (> 5bp) 7171702 7174077 1428027 1430398 CM091753.1 scf7180002755023 99.24 True relocation, scaffold gap is present, inconsistency = -10629 7174106 7183495 1441056 1450462 CM091753.1 scf7180002755023 99.38 True translocation, scaffold gap is present 4655228 4677380 1451295 1473444 CM091761.1 scf7180002755023 99.55 True translocation, scaffold gap is present 7183497 7204245 1473465 1494217 CM091753.1 scf7180002755023 99.33 True translocation, scaffold gap is present 4677387 4681825 1508828 1513248 CM091761.1 scf7180002755023 97.89 True translocation 7204986 7225644 1513249 1533918 CM091753.1 scf7180002755023 99.16 True translocation, scaffold gap is present 4681992 4683813 1538133 1539972 CM091761.1 scf7180002755023 97.66 True fake: scaffold gap size wrong estimation (local) 4686012 4688460 1542075 1544524 CM091761.1 scf7180002755023 99.35 True local misassembly 4689306 4741634 1544754 1597105 CM091761.1 scf7180002755023 99.74 True translocation, scaffold gap is present 7225803 7230667 1613299 1618153 CM091753.1 scf7180002755023 99.45 True fake: scaffold gap size wrong estimation (local) 7230665 7244423 1621793 1635559 CM091753.1 scf7180002755023 99.63 True fake: scaffold gap size wrong estimation (local) 7244438 7246985 1637193 1639739 CM091753.1 scf7180002755023 99.88 True fake: scaffold gap size wrong estimation (local) 7247078 7345013 1639882 1737827 CM091753.1 scf7180002755023 99.66 True relocation, scaffold gap is present, inconsistency = -89559 7345023 7358065 1827396 1840471 CM091753.1 scf7180002755023 99.88 True fake: scaffold gap size wrong estimation (local) 7358851 7374059 1841257 1856463 CM091753.1 scf7180002755023 99.91 True fake: scaffold gap size wrong estimation (extensive) 7374300 7459597 1863828 1949094 CM091753.1 scf7180002755023 99.53 True relocation, scaffold gap is present, inconsistency = -76450 7459649 7499519 2025596 2065531 CM091753.1 scf7180002755023 99.26 True relocation, scaffold gap is present, inconsistency = -27544 7499543 7546028 2093099 2139566 CM091753.1 scf7180002755023 99.44 True relocation, scaffold gap is present, inconsistency = -33105 7546090 7551534 2172733 2178185 CM091753.1 scf7180002755023 99.36 True indel: indel (<= 5bp) 7551667 7558478 2178323 2185148 CM091753.1 scf7180002755023 99.08 True fake: scaffold gap size wrong estimation (local) 7558960 7607936 2191177 2240256 CM091753.1 scf7180002755023 99.18 True relocation, scaffold gap is present, inconsistency = -49266 7607931 7619313 2289517 2300901 CM091753.1 scf7180002755023 99.49 True relocation, scaffold gap is present, inconsistency = -11220 7619397 7632431 2312205 2325217 CM091753.1 scf7180002755023 99.42 True fake: scaffold gap size wrong estimation (local) 7632755 7642306 2328458 2338002 CM091753.1 scf7180002755023 99.6 True fake: scaffold gap size wrong estimation (local) 7642582 7664874 2343193 2365540 CM091753.1 scf7180002755023 99.27 True fake: scaffold gap size wrong estimation (local) 7665862 7667237 2366493 2367868 CM091753.1 scf7180002755023 100.0 True indel: indel (<= 5bp) 7667238 7668130 2367871 2368763 CM091753.1 scf7180002755023 99.78 True indel: indel (<= 5bp) 7668131 7668747 2368766 2369382 CM091753.1 scf7180002755023 99.51 True fake: scaffold gap size wrong estimation (local) 7669641 7670639 2370268 2371266 CM091753.1 scf7180002755023 99.2 True indel: indel (> 5bp) 7670660 7671298 2371267 2371905 CM091753.1 scf7180002755023 98.9 True local misassembly 7672255 7674037 2372005 2373787 CM091753.1 scf7180002755023 99.72 True indel: indel (<= 5bp) 7674039 7675568 2373788 2375317 CM091753.1 scf7180002755023 99.74 True indel: indel (<= 5bp) 7675569 7677206 2375321 2376958 CM091753.1 scf7180002755023 99.82 True indel: indel (<= 5bp) 7677263 7678209 2377019 2377965 CM091753.1 scf7180002755023 99.68 True indel: indel (> 5bp) 7678249 7678787 2377974 2378512 CM091753.1 scf7180002755023 98.7 True indel: stretch of mismatches 7678872 7679742 2378597 2379467 CM091753.1 scf7180002755023 99.89 True indel: indel (> 5bp) 7680012 7681085 2379752 2380825 CM091753.1 scf7180002755023 97.45 True fake: scaffold gap size wrong estimation (local) 7681180 7707494 2380918 2407219 CM091753.1 scf7180002755023 99.29 True fake: scaffold gap size wrong estimation (extensive) 7707500 7765805 2416597 2475040 CM091753.1 scf7180002755023 99.34 True indel: indel (> 5bp) 7765832 7860835 2475087 2570338 CM091753.1 scf7180002755023 99.23 True translocation 5367742 5384136 2588583 2572504 CM091764.1 scf7180002755023 97.19 True relocation, scaffold gap is present, inconsistency = -19809 5303654 5367199 2672292 2608935 CM091764.1 scf7180002755023 99.16 True relocation, scaffold gap is present, inconsistency = -45582 5234089 5300685 2786725 2720843 CM091764.1 scf7180002755023 98.42 True relocation, scaffold gap is present, inconsistency = -11460 5148613 5234085 2883716 2798189 CM091764.1 scf7180002755023 99.47 True relocation, scaffold gap is present, inconsistency = -72365 5093539 5148575 3011170 2956119 CM091764.1 scf7180002755023 99.48 True relocation, scaffold gap is present, inconsistency = -54525 5060130 5093466 3098791 3065768 CM091764.1 scf7180002755023 98.14 True fake: scaffold gap size wrong estimation (local) 5057638 5060037 3101302 3098906 CM091764.1 scf7180002755023 99.04 True fake: scaffold gap size wrong estimation (local) 4995356 5057458 3163672 3101440 CM091764.1 scf7180002755023 99.38 True local misassembly 4911608 4995096 3247255 3163840 CM091764.1 scf7180002755023 99.29 True relocation, scaffold gap is present, inconsistency = -60700 4895913 4910965 3323657 3308598 CM091764.1 scf7180002755023 99.69 True relocation, scaffold gap is present, inconsistency = -14221 4847842 4895426 3385969 3338365 CM091764.1 scf7180002755023 99.63 True relocation, scaffold gap is present, inconsistency = -23511 4833635 4847843 3423615 3409479 CM091764.1 scf7180002755023 99.13 True CONTIG scf7180002755023 3423615 misassembled 4487744 4523057 35264 1 CM091755.1 scf7180002755024 99.23 True indel: indel (> 5bp) 4398820 4487588 124228 35443 CM091755.1 scf7180002755024 99.49 True local misassembly 4327525 4398642 195412 124289 CM091755.1 scf7180002755024 99.16 True relocation, scaffold gap is present, inconsistency = -23524 4307279 4326720 239197 219741 CM091755.1 scf7180002755024 99.31 True translocation, scaffold gap is present 17115775 17120210 239218 243653 CM091751.1 scf7180002755024 99.93 True translocation, scaffold gap is present 4221265 4306863 333574 247896 CM091755.1 scf7180002755024 99.3 True local misassembly 4211435 4220763 343407 334091 CM091755.1 scf7180002755024 99.41 True relocation, scaffold gap is present, inconsistency = -21336 4180757 4211117 395421 365061 CM091755.1 scf7180002755024 99.28 True indel: indel (> 5bp) 4153450 4180772 422770 395422 CM091755.1 scf7180002755024 99.54 True fake: scaffold gap size wrong estimation (local) 4132790 4153365 443607 423319 CM091755.1 scf7180002755024 97.97 True fake: scaffold gap size wrong estimation (extensive) 4084524 4133000 499277 450486 CM091755.1 scf7180002755024 98.98 True relocation, scaffold gap is present, inconsistency = -23587 4054438 4084600 552936 522788 CM091755.1 scf7180002755024 99.47 True relocation, scaffold gap is present, inconsistency = -14875 4036527 4053677 585778 568572 CM091755.1 scf7180002755024 99.26 True relocation, scaffold gap is present, inconsistency = -15896 3975919 4035966 662392 602235 CM091755.1 scf7180002755024 99.31 True fake: scaffold gap size wrong estimation (local) 3923795 3975925 719709 667620 CM091755.1 scf7180002755024 99.32 True relocation, scaffold gap is present, inconsistency = -51555 3907062 3923786 788001 771273 CM091755.1 scf7180002755024 99.61 True translocation 10874153 10877236 791091 788002 CM091758.1 scf7180002755024 99.65 True translocation 9016101 9019358 794345 791092 CM091763.1 scf7180002755024 99.11 True fake: scaffold gap size wrong estimation (local) 9011726 9015721 799742 795749 CM091763.1 scf7180002755024 98.64 True fake: scaffold gap size wrong estimation (local) 8949030 9011553 861295 799947 CM091763.1 scf7180002755024 97.09 True indel: indel (> 5bp) 8939902 8948953 870476 861400 CM091763.1 scf7180002755024 99.28 True fake: scaffold gap size wrong estimation (local) 8938619 8939247 878450 877822 CM091763.1 scf7180002755024 99.68 True local misassembly 8937454 8937989 879475 878940 CM091763.1 scf7180002755024 98.51 True indel: indel (<= 5bp) 8936778 8937453 880152 879477 CM091763.1 scf7180002755024 100.0 True indel: indel (> 5bp) 8935791 8936443 881157 880505 CM091763.1 scf7180002755024 99.39 True local misassembly 8933307 8934559 883652 882400 CM091763.1 scf7180002755024 99.6 True indel: indel (<= 5bp) 8932336 8932882 884626 884080 CM091763.1 scf7180002755024 99.63 True local misassembly 8929971 8930563 886706 886114 CM091763.1 scf7180002755024 98.65 True indel: stretch of mismatches 8928760 8929531 887917 887146 CM091763.1 scf7180002755024 99.87 True local misassembly 8913966 8928582 902585 887984 CM091763.1 scf7180002755024 99.27 True fake: scaffold gap size wrong estimation (local) 8881674 8913715 933485 902730 CM091763.1 scf7180002755024 95.02 True relocation, scaffold gap is present, inconsistency = -10147 8851794 8881644 973571 943662 CM091763.1 scf7180002755024 99.14 True indel: indel (> 5bp) 8806102 8851460 1018257 973895 CM091763.1 scf7180002755024 97.36 True relocation, scaffold gap is present, inconsistency = -16290 8749399 8805886 1091349 1034763 CM091763.1 scf7180002755024 99.64 True indel: indel (> 5bp) 8689262 8749355 1151584 1091403 CM091763.1 scf7180002755024 99.56 True relocation, scaffold gap is present, inconsistency = -112946 8768493 8769034 1185304 1184758 CM091763.1 scf7180002755024 100.0 True fake: scaffold gap size wrong estimation (local) 8656122 8689298 1297988 1264827 CM091763.1 scf7180002755024 99.24 True relocation, scaffold gap is present, inconsistency = -18822 8648575 8655939 1324380 1316993 CM091763.1 scf7180002755024 99.15 True indel: indel (> 5bp) 8642995 8648203 1330011 1324795 CM091763.1 scf7180002755024 99.21 True indel: indel (> 5bp) 8638578 8642899 1334409 1330077 CM091763.1 scf7180002755024 99.26 True relocation, scaffold gap is present, inconsistency = -10084 8620329 8637978 1362742 1345093 CM091763.1 scf7180002755024 99.26 True fake: scaffold gap size wrong estimation (local) 8497097 8619663 1485938 1363352 CM091763.1 scf7180002755024 99.33 True local misassembly 8474319 8496511 1508148 1486047 CM091763.1 scf7180002755024 98.9 True indel: indel (<= 5bp) 8472820 8473960 1509651 1508508 CM091763.1 scf7180002755024 98.25 True CONTIG scf7180002755024 1509651 misassembled 9930564 9933888 3344 1 CM091765.1 scf7180002755025 99.24 True translocation 9500627 9522054 24915 3345 CM091755.1 scf7180002755025 98.49 True local misassembly 9495784 9500108 29292 24968 CM091755.1 scf7180002755025 99.21 True indel: indel (<= 5bp) 9494950 9495617 30128 29461 CM091755.1 scf7180002755025 99.85 True fake: scaffold gap size wrong estimation (local) 9493172 9494403 31668 30437 CM091755.1 scf7180002755025 97.73 True local misassembly 9492034 9492535 32815 32314 CM091755.1 scf7180002755025 99.4 True indel: indel (<= 5bp) 9490334 9492033 34518 32819 CM091755.1 scf7180002755025 99.35 True indel: indel (<= 5bp) 9489241 9490333 35612 34520 CM091755.1 scf7180002755025 99.91 True indel: indel (<= 5bp) 9487574 9489240 37281 35615 CM091755.1 scf7180002755025 99.4 True local misassembly 9484861 9486461 39995 38395 CM091755.1 scf7180002755025 99.56 True indel: indel (<= 5bp) 9484115 9484859 40740 39996 CM091755.1 scf7180002755025 99.73 True local misassembly 9482304 9483333 41873 40844 CM091755.1 scf7180002755025 99.42 True local misassembly 9479437 9481379 44750 42808 CM091755.1 scf7180002755025 99.28 True indel: indel (<= 5bp) 9478094 9479436 46094 44752 CM091755.1 scf7180002755025 99.55 True fake: not a misassembly (possible transposable element) 11196054 11196725 46807 46134 CM091766.1 scf7180002755025 98.81 True fake: not a misassembly (possible transposable element) 9424946 9476691 98764 46827 CM091755.1 scf7180002755025 99.1 True local misassembly 9422906 9424235 100380 99051 CM091755.1 scf7180002755025 98.87 True local misassembly 9421637 9422238 101647 101046 CM091755.1 scf7180002755025 99.5 True local misassembly 9420088 9420701 103177 102564 CM091755.1 scf7180002755025 99.51 True fake: scaffold gap size wrong estimation (local) 9355945 9419216 167287 103931 CM091755.1 scf7180002755025 99.42 True relocation, scaffold gap is present, inconsistency = -14798 9272634 9355927 265313 182103 CM091755.1 scf7180002755025 99.82 True relocation, inconsistency = 8748 9256326 9263885 265314 272871 CM091755.1 scf7180002755025 99.96 True relocation, scaffold gap is present, inconsistency = -158153 9223569 9244795 463800 442555 CM091755.1 scf7180002755025 99.59 True relocation, scaffold gap is present, inconsistency = -92450 9171186 9188714 608639 591105 CM091755.1 scf7180002755025 99.65 True relocation, inconsistency = 16241 9147286 9154944 616298 608640 CM091755.1 scf7180002755025 99.96 True fake: scaffold gap size wrong estimation (local) 9069746 9146544 693347 616494 CM091755.1 scf7180002755025 99.49 True indel: indel (> 5bp) 9022883 9069615 740176 693484 CM091755.1 scf7180002755025 98.29 True fake: scaffold gap size wrong estimation (local) 9014105 9022311 748773 740538 CM091755.1 scf7180002755025 98.87 True fake: scaffold gap size wrong estimation (local) 9004321 9013925 758314 748953 CM091755.1 scf7180002755025 96.16 True fake: scaffold gap size wrong estimation (local) 8987692 9004189 774962 758442 CM091755.1 scf7180002755025 98.61 True fake: scaffold gap size wrong estimation (local) 8979047 8986993 785089 777151 CM091755.1 scf7180002755025 98.95 True fake: scaffold gap size wrong estimation (local) 8974984 8978503 795620 792107 CM091755.1 scf7180002755025 99.18 True fake: scaffold gap size wrong estimation (local) 8968769 8974925 802567 796470 CM091755.1 scf7180002755025 97.84 True indel: indel (> 5bp) 8962100 8968745 809241 802605 CM091755.1 scf7180002755025 97.84 True fake: scaffold gap size wrong estimation (local) 8960394 8960992 810364 809766 CM091755.1 scf7180002755025 99.33 True indel: indel (<= 5bp) 8959857 8960393 810902 810366 CM091755.1 scf7180002755025 98.32 True local misassembly 8958531 8959354 811848 811025 CM091755.1 scf7180002755025 99.39 True indel: indel (<= 5bp) 8957808 8958338 812569 812039 CM091755.1 scf7180002755025 99.25 True indel: indel (> 5bp) 8956803 8957377 813607 813033 CM091755.1 scf7180002755025 99.83 True indel: indel (<= 5bp) 8955594 8956649 814815 813760 CM091755.1 scf7180002755025 99.43 True indel: indel (<= 5bp) 8954811 8955593 815599 814817 CM091755.1 scf7180002755025 99.62 True indel: indel (<= 5bp) 8954109 8954810 816302 815601 CM091755.1 scf7180002755025 99.72 True fake: scaffold gap size wrong estimation (local) 8945973 8953000 826389 819349 CM091755.1 scf7180002755025 98.68 True fake: scaffold gap size wrong estimation (local) 8916680 8945165 855358 827191 CM091755.1 scf7180002755025 98.12 True indel: indel (> 5bp) 8913260 8916490 858675 855472 CM091755.1 scf7180002755025 98.48 True fake: scaffold gap size wrong estimation (local) 8901261 8913233 874022 862060 CM091755.1 scf7180002755025 99.4 True fake: scaffold gap size wrong estimation (local) 8899538 8900189 874863 874217 CM091755.1 scf7180002755025 98.47 True relocation, inconsistency = 19613 8876536 8879924 878258 874864 CM091755.1 scf7180002755025 99.35 True fake: scaffold gap size wrong estimation (local) 8860143 8875904 894440 878898 CM091755.1 scf7180002755025 97.2 True fake: scaffold gap size wrong estimation (local) 8836753 8860102 917744 894524 CM091755.1 scf7180002755025 98.83 True fake: scaffold gap size wrong estimation (local) 8832989 8836580 926140 922553 CM091755.1 scf7180002755025 98.91 True fake: scaffold gap size wrong estimation (local) 8816540 8832440 942133 926394 CM091755.1 scf7180002755025 97.8 True fake: scaffold gap size wrong estimation (local) 8811682 8815615 946089 942154 CM091755.1 scf7180002755025 99.85 True fake: scaffold gap size wrong estimation (local) 8807808 8811289 953019 949534 CM091755.1 scf7180002755025 99.25 True indel: indel (> 5bp) 8799749 8807752 961028 953058 CM091755.1 scf7180002755025 98.71 True relocation, scaffold gap is present, inconsistency = -11512 8796352 8799702 975938 972587 CM091755.1 scf7180002755025 99.88 True fake: scaffold gap size wrong estimation (local) 8789806 8795587 981746 976211 CM091755.1 scf7180002755025 95.23 True fake: scaffold gap size wrong estimation (local) 8788405 8789779 984330 982955 CM091755.1 scf7180002755025 99.27 True fake: scaffold gap size wrong estimation (local) 8786713 8787445 985853 985121 CM091755.1 scf7180002755025 99.73 True fake: scaffold gap size wrong estimation (local) 8782997 8785851 989789 986902 CM091755.1 scf7180002755025 97.52 True fake: not a misassembly (possible transposable element) 3708327 3710604 989790 992056 CM091752.1 scf7180002755025 99.14 True fake: not a misassembly (possible transposable element) 8778040 8782834 996871 992077 CM091755.1 scf7180002755025 99.69 True translocation, scaffold gap is present 3710484 3716767 996892 1003175 CM091752.1 scf7180002755025 99.73 True translocation, scaffold gap is present 8766237 8777854 1017680 1006037 CM091755.1 scf7180002755025 99.66 True translocation, scaffold gap is present 3716969 3728634 1018170 1029848 CM091752.1 scf7180002755025 99.35 True fake: not a misassembly (possible transposable element) 8762039 8765792 1033622 1029869 CM091755.1 scf7180002755025 99.79 True fake: not a misassembly (possible transposable element) 3729751 3731180 1033979 1035410 CM091752.1 scf7180002755025 99.65 True translocation, scaffold gap is present 8759427 8761948 1037952 1035431 CM091755.1 scf7180002755025 99.37 True indel: indel (<= 5bp) 8758564 8759392 1038819 1037991 CM091755.1 scf7180002755025 99.28 True fake: scaffold gap size wrong estimation (local) 8756996 8758563 1046182 1044615 CM091755.1 scf7180002755025 99.62 True indel: indel (<= 5bp) 8753671 8756766 1049503 1046408 CM091755.1 scf7180002755025 99.77 True indel: indel (<= 5bp) 8752299 8753669 1050874 1049504 CM091755.1 scf7180002755025 99.42 True indel: indel (> 5bp) 8751074 8752298 1052117 1050893 CM091755.1 scf7180002755025 99.67 True translocation, scaffold gap is present 3735566 3746228 1052411 1063076 CM091752.1 scf7180002755025 99.7 True translocation, scaffold gap is present 8743147 8750752 1073044 1065414 CM091755.1 scf7180002755025 98.15 True fake: scaffold gap size wrong estimation (local) 8637111 8742815 1186855 1078409 CM091755.1 scf7180002755025 99.35 True relocation, scaffold gap is present, inconsistency = -57574 8590102 8637106 1291540 1244434 CM091755.1 scf7180002755025 99.24 True relocation, scaffold gap is present, inconsistency = -32839 8576180 8590063 1338384 1324418 CM091755.1 scf7180002755025 98.31 True translocation 1000475 1001682 1339794 1338587 CM091754.1 scf7180002755025 99.5 True indel: indel (> 5bp) 999388 1000431 1340841 1339798 CM091754.1 scf7180002755025 99.04 True indel: indel (<= 5bp) 998257 999181 1341970 1341046 CM091754.1 scf7180002755025 99.03 True local misassembly 994910 996379 1345346 1343877 CM091754.1 scf7180002755025 99.39 True indel: indel (<= 5bp) 993897 994866 1346360 1345391 CM091754.1 scf7180002755025 99.48 True local misassembly 991649 992966 1348606 1347289 CM091754.1 scf7180002755025 99.24 True indel: indel (<= 5bp) 990825 991461 1349435 1348799 CM091754.1 scf7180002755025 99.69 True indel: indel (<= 5bp) 988902 990725 1351360 1349537 CM091754.1 scf7180002755025 99.51 True local misassembly 987866 988376 1351871 1351361 CM091754.1 scf7180002755025 98.83 True indel: indel (<= 5bp) 986951 987864 1352785 1351872 CM091754.1 scf7180002755025 98.91 True indel: indel (> 5bp) 986204 986827 1353490 1352867 CM091754.1 scf7180002755025 99.84 True indel: indel (<= 5bp) 984399 986024 1355290 1353665 CM091754.1 scf7180002755025 99.45 True indel: indel (<= 5bp) 983579 984093 1356113 1355599 CM091754.1 scf7180002755025 98.83 True local misassembly 980596 981936 1358225 1356885 CM091754.1 scf7180002755025 99.55 True local misassembly 978455 979703 1360361 1359113 CM091754.1 scf7180002755025 99.28 True local misassembly 976514 977440 1361288 1360362 CM091754.1 scf7180002755025 99.35 True indel: indel (<= 5bp) 975757 976506 1362049 1361300 CM091754.1 scf7180002755025 100.0 True local misassembly 972598 974081 1365094 1363610 CM091754.1 scf7180002755025 99.37 True translocation 9417096 9528538 1476413 1365095 CM091751.1 scf7180002755025 99.25 True fake: scaffold gap size wrong estimation (local) 9387012 9416894 1506523 1476567 CM091751.1 scf7180002755025 99.54 True fake: scaffold gap size wrong estimation (extensive) 9386000 9386536 1515007 1514464 CM091751.1 scf7180002755025 99.81 True fake: scaffold gap size wrong estimation (local) 9360483 9385823 1540530 1515178 CM091751.1 scf7180002755025 99.55 True fake: scaffold gap size wrong estimation (local) 9338605 9360483 1566797 1545590 CM091751.1 scf7180002755025 96.16 True fake: scaffold gap size wrong estimation (local) 9296255 9338529 1611770 1569454 CM091751.1 scf7180002755025 99.56 True relocation, scaffold gap is present, inconsistency = -14666 9274754 9296232 1647936 1626459 CM091751.1 scf7180002755025 99.91 True fake: scaffold gap size wrong estimation (local) 9270537 9274026 1652048 1648559 CM091751.1 scf7180002755025 100.0 True fake: scaffold gap size wrong estimation (local) 9237660 9270339 1687298 1654641 CM091751.1 scf7180002755025 99.82 True relocation, scaffold gap is present, inconsistency = -32651 9233137 9237229 1724569 1720380 CM091751.1 scf7180002755025 98.01 True relocation, inconsistency = 65326 9159780 9167810 1732596 1724570 CM091751.1 scf7180002755025 99.84 True relocation, scaffold gap is present, inconsistency = -11056 9048778 9159770 1853557 1743662 CM091751.1 scf7180002755025 98.54 True indel: indel (> 5bp) 9044199 9048633 1858155 1853696 CM091751.1 scf7180002755025 99.46 True fake: scaffold gap size wrong estimation (local) 8978896 9044196 1924594 1859221 CM091751.1 scf7180002755025 99.41 True fake: scaffold gap size wrong estimation (local) 8937984 8978842 1966802 1926295 CM091751.1 scf7180002755025 98.32 True relocation, scaffold gap is present, inconsistency = -15856 8932946 8938000 1987698 1982642 CM091751.1 scf7180002755025 99.51 True fake: scaffold gap size wrong estimation (local) 8926757 8932830 1998653 1992573 CM091751.1 scf7180002755025 99.62 True fake: scaffold gap size wrong estimation (local) 8913159 8926625 2011958 1998761 CM091751.1 scf7180002755025 97.22 True fake: scaffold gap size wrong estimation (local) 8886390 8912984 2037975 2012086 CM091751.1 scf7180002755025 96.45 True fake: scaffold gap size wrong estimation (local) 8849774 8886368 2076389 2039687 CM091751.1 scf7180002755025 99.46 True fake: scaffold gap size wrong estimation (extensive) 8790941 8849727 2142692 2083878 CM091751.1 scf7180002755025 99.42 True indel: indel (> 5bp) 8781896 8790776 2151739 2142849 CM091751.1 scf7180002755025 99.23 True relocation, scaffold gap is present, inconsistency = -16243 8778215 8781627 2171663 2168251 CM091751.1 scf7180002755025 99.3 True local misassembly 8776720 8777882 2172826 2171664 CM091751.1 scf7180002755025 99.91 True indel: indel (<= 5bp) 8775946 8776719 2173601 2172828 CM091751.1 scf7180002755025 99.74 True indel: indel (<= 5bp) 8773647 8775944 2175899 2173602 CM091751.1 scf7180002755025 99.87 True indel: indel (<= 5bp) 8772733 8773422 2176816 2176127 CM091751.1 scf7180002755025 100.0 True indel: stretch of mismatches 8770146 8772703 2179403 2176846 CM091751.1 scf7180002755025 98.94 True indel: indel (> 5bp) 8768893 8770094 2180605 2179404 CM091751.1 scf7180002755025 99.58 True fake: scaffold gap size wrong estimation (local) 8767553 8768892 2181970 2180631 CM091751.1 scf7180002755025 99.85 True indel: indel (<= 5bp) 8766822 8767497 2182700 2182025 CM091751.1 scf7180002755025 96.89 True local misassembly 8764131 8765798 2184634 2182967 CM091751.1 scf7180002755025 98.74 True indel: indel (> 5bp) 8762787 8763791 2185987 2184983 CM091751.1 scf7180002755025 99.6 True fake: scaffold gap size wrong estimation (local) 8762072 8762730 2186724 2186066 CM091751.1 scf7180002755025 99.85 True indel: stretch of mismatches 8759718 8761661 2189078 2187135 CM091751.1 scf7180002755025 99.69 True indel: indel (<= 5bp) 8759024 8759628 2189770 2189166 CM091751.1 scf7180002755025 99.67 True fake: scaffold gap size wrong estimation (local) 8752683 8758040 2195276 2189934 CM091751.1 scf7180002755025 99.46 True fake: scaffold gap size wrong estimation (local) 8737290 8752551 2210666 2195395 CM091751.1 scf7180002755025 99.46 True fake: scaffold gap size wrong estimation (local) 8733963 8737244 2214040 2210759 CM091751.1 scf7180002755025 99.79 True indel: indel (> 5bp) 8733057 8733578 2214953 2214432 CM091751.1 scf7180002755025 99.81 True fake: scaffold gap size wrong estimation (local) 8730798 8731740 2216536 2215594 CM091751.1 scf7180002755025 99.58 True indel: indel (<= 5bp) 8729959 8730796 2217374 2216537 CM091751.1 scf7180002755025 99.88 True indel: indel (<= 5bp) 8728651 8729958 2218683 2217376 CM091751.1 scf7180002755025 99.54 True fake: scaffold gap size wrong estimation (local) 8718710 8728654 2229152 2219366 CM091751.1 scf7180002755025 97.8 True fake: scaffold gap size wrong estimation (local) 8666519 8718700 2282536 2230352 CM091751.1 scf7180002755025 99.56 True fake: scaffold gap size wrong estimation (local) 8647212 8666487 2303013 2284503 CM091751.1 scf7180002755025 95.27 True fake: scaffold gap size wrong estimation (local) 8626913 8647145 2323566 2303317 CM091751.1 scf7180002755025 99.4 True fake: scaffold gap size wrong estimation (local) 8597806 8626609 2358130 2329296 CM091751.1 scf7180002755025 99.49 True fake: scaffold gap size wrong estimation (local) 8556083 8596636 2400710 2360130 CM091751.1 scf7180002755025 99.74 True indel: indel (> 5bp) 8543074 8556051 2413750 2400766 CM091751.1 scf7180002755025 99.57 True relocation, scaffold gap is present, inconsistency = -50470 8519855 8543054 2487452 2464240 CM091751.1 scf7180002755025 99.59 True fake: scaffold gap size wrong estimation (extensive) 8513245 8519384 2502098 2495955 CM091751.1 scf7180002755025 99.61 True fake: scaffold gap size wrong estimation (local) 8434664 8512768 2585671 2507473 CM091751.1 scf7180002755025 98.84 True fake: scaffold gap size wrong estimation (local) 8402711 8434608 2619090 2587273 CM091751.1 scf7180002755025 99.05 True fake: scaffold gap size wrong estimation (local) 8332624 8402547 2689234 2619239 CM091751.1 scf7180002755025 99.54 True fake: scaffold gap size wrong estimation (extensive) 8316935 8332618 2719281 2698255 CM091751.1 scf7180002755025 97.46 True fake: scaffold gap size wrong estimation (local) 8233365 8316932 2814994 2725189 CM091751.1 scf7180002755025 98.45 True indel: stretch of mismatches 8228941 8233364 2819430 2814995 CM091751.1 scf7180002755025 99.4 True fake: scaffold gap size wrong estimation (local) 8219794 8228931 2829967 2820842 CM091751.1 scf7180002755025 99.5 True fake: scaffold gap size wrong estimation (local) 8073607 8219677 2978290 2830424 CM091751.1 scf7180002755025 99.07 True indel: indel (> 5bp) 8023419 8073452 3028065 2978484 CM091751.1 scf7180002755025 98.3 True fake: scaffold gap size wrong estimation (local) 8007113 8022212 3044811 3029714 CM091751.1 scf7180002755025 99.63 True relocation, scaffold gap is present, inconsistency = -11528 7970060 8007090 3093460 3056362 CM091751.1 scf7180002755025 99.58 True relocation, scaffold gap is present, inconsistency = -18545 7930781 7970078 3155571 3111987 CM091751.1 scf7180002755025 99.08 True fake: scaffold gap size wrong estimation (local) 7926113 7929894 3159374 3155592 CM091751.1 scf7180002755025 99.63 True fake: scaffold gap size wrong estimation (local) 7904007 7926058 3184105 3161958 CM091751.1 scf7180002755025 99.46 True fake: scaffold gap size wrong estimation (local) 7808514 7903740 3281021 3185760 CM091751.1 scf7180002755025 99.51 True indel: indel (<= 5bp) 7779565 7808455 3310047 3281077 CM091751.1 scf7180002755025 99.19 True fake: scaffold gap size wrong estimation (local) 7772162 7779170 3317140 3310177 CM091751.1 scf7180002755025 98.27 True fake: scaffold gap size wrong estimation (local) 7768570 7772118 3326933 3323389 CM091751.1 scf7180002755025 99.22 True local misassembly 7604389 7767955 3490581 3326934 CM091751.1 scf7180002755025 99.46 True local misassembly 7546612 7602543 3546509 3490582 CM091751.1 scf7180002755025 99.4 True relocation, scaffold gap is present, inconsistency = -16646 7541308 7545761 3568467 3564006 CM091751.1 scf7180002755025 99.51 True indel: indel (> 5bp) 7517315 7541208 3592494 3568578 CM091751.1 scf7180002755025 99.42 True translocation 6862016 6866606 3592495 3597085 CM091754.1 scf7180002755025 99.94 True relocation, inconsistency = 15423 6882030 6923773 3597086 3638840 CM091754.1 scf7180002755025 99.67 True relocation, scaffold gap is present, inconsistency = -54452 6923770 6928433 3693289 3697955 CM091754.1 scf7180002755025 99.14 True indel: indel (> 5bp) 6928664 6944843 3698150 3714323 CM091754.1 scf7180002755025 99.29 True fake: scaffold gap size wrong estimation (extensive) 6944908 6969951 3722895 3747938 CM091754.1 scf7180002755025 99.71 True fake: scaffold gap size wrong estimation (extensive) 6969962 6979174 3756687 3765916 CM091754.1 scf7180002755025 99.48 True fake: scaffold gap size wrong estimation (local) 6978859 6999794 3771103 3791346 CM091754.1 scf7180002755025 95.92 True fake: scaffold gap size wrong estimation (local) 7000059 7061588 3796979 3858490 CM091754.1 scf7180002755025 99.85 True relocation, scaffold gap is present, inconsistency = -57283 7061580 7063294 3915765 3917469 CM091754.1 scf7180002755025 99.42 True fake: scaffold gap size wrong estimation (local) 7063387 7126065 3917565 3980116 CM091754.1 scf7180002755025 99.31 True fake: scaffold gap size wrong estimation (local) 7126096 7161956 3985341 4021294 CM091754.1 scf7180002755025 99.35 True CONTIG scf7180002755025 4021294 misassembled 3591166 3593899 2735 1 CM091754.1 scf7180002755026 99.71 True local misassembly 3575919 3590783 18244 3269 CM091754.1 scf7180002755026 98.58 True indel: indel (> 5bp) 3557148 3575669 37120 18488 CM091754.1 scf7180002755026 98.57 True fake: scaffold gap size wrong estimation (local) 3555499 3556829 41307 39972 CM091754.1 scf7180002755026 99.03 True fake: scaffold gap size wrong estimation (local) 3539600 3554994 57371 41826 CM091754.1 scf7180002755026 97.74 True fake: scaffold gap size wrong estimation (extensive) 3535358 3539273 71122 67196 CM091754.1 scf7180002755026 98.68 True fake: scaffold gap size wrong estimation (local) 3515150 3534985 91151 71484 CM091754.1 scf7180002755026 97.97 True local misassembly 3513017 3513582 92438 91873 CM091754.1 scf7180002755026 98.76 True indel: indel (> 5bp) 3511644 3512919 93799 92524 CM091754.1 scf7180002755026 98.82 True indel: indel (<= 5bp) 3510798 3511643 94646 93801 CM091754.1 scf7180002755026 99.76 True indel: indel (<= 5bp) 3509875 3510796 95568 94647 CM091754.1 scf7180002755026 98.16 True indel: indel (> 5bp) 3508220 3509567 97211 95864 CM091754.1 scf7180002755026 99.41 True local misassembly 3505690 3507463 99536 97763 CM091754.1 scf7180002755026 99.61 True fake: scaffold gap size wrong estimation (local) 3499534 3504792 111071 105817 CM091754.1 scf7180002755026 99.11 True fake: scaffold gap size wrong estimation (local) 3498454 3499288 115656 114822 CM091754.1 scf7180002755026 99.52 True fake: scaffold gap size wrong estimation (local) 3475802 3498298 138410 116109 CM091754.1 scf7180002755026 97.82 True relocation, scaffold gap is present, inconsistency = -12920 3423796 3475574 202916 151558 CM091754.1 scf7180002755026 97.82 True fake: scaffold gap size wrong estimation (local) 3414017 3423673 212695 203040 CM091754.1 scf7180002755026 98.99 True fake: scaffold gap size wrong estimation (local) 3410143 3413388 221581 218331 CM091754.1 scf7180002755026 99.42 True fake: scaffold gap size wrong estimation (local) 3395963 3409486 237936 224379 CM091754.1 scf7180002755026 98.73 True relocation, scaffold gap is present, inconsistency = -13346 3378471 3395594 268609 251651 CM091754.1 scf7180002755026 98.36 True indel: indel (<= 5bp) 3374960 3378462 272172 268616 CM091754.1 scf7180002755026 97.56 True fake: scaffold gap size wrong estimation (local) 3372500 3374052 274567 273015 CM091754.1 scf7180002755026 99.48 True indel: indel (<= 5bp) 3371036 3372497 276029 274568 CM091754.1 scf7180002755026 99.18 True indel: indel (<= 5bp) 3370205 3371033 276858 276030 CM091754.1 scf7180002755026 99.76 True local misassembly 3365520 3366286 277862 277096 CM091754.1 scf7180002755026 99.48 True indel: indel (> 5bp) 3363019 3365182 280353 278190 CM091754.1 scf7180002755026 99.17 True local misassembly 3360858 3362466 282544 280936 CM091754.1 scf7180002755026 99.32 True indel: indel (> 5bp) 3360069 3360848 283324 282545 CM091754.1 scf7180002755026 98.33 True indel: indel (<= 5bp) 3346787 3359937 296738 283457 CM091754.1 scf7180002755026 97.77 True indel: indel (> 5bp) 3345394 3346661 298157 296883 CM091754.1 scf7180002755026 97.58 True fake: scaffold gap size wrong estimation (local) 3344067 3344952 302125 301240 CM091754.1 scf7180002755026 99.89 True indel: indel (> 5bp) 3343487 3344059 302698 302126 CM091754.1 scf7180002755026 99.65 True local misassembly 3341217 3342271 304971 303917 CM091754.1 scf7180002755026 99.62 True indel: indel (<= 5bp) 3340688 3341216 305501 304973 CM091754.1 scf7180002755026 99.62 True indel: indel (> 5bp) 3340037 3340616 306139 305560 CM091754.1 scf7180002755026 99.83 True indel: indel (> 5bp) 3336274 3340002 309887 306159 CM091754.1 scf7180002755026 99.49 True indel: stretch of mismatches 3335176 3335920 310985 310241 CM091754.1 scf7180002755026 99.87 True indel: indel (<= 5bp) 3333699 3335175 312463 310987 CM091754.1 scf7180002755026 99.86 True indel: indel (> 5bp) 3332589 3333242 313582 312929 CM091754.1 scf7180002755026 100.0 True local misassembly 3330143 3331254 316028 314917 CM091754.1 scf7180002755026 99.82 True local misassembly 3327746 3329613 317896 316029 CM091754.1 scf7180002755026 99.46 True local misassembly 3325848 3326830 319312 318330 CM091754.1 scf7180002755026 99.59 True local misassembly 3323849 3324741 320859 319967 CM091754.1 scf7180002755026 99.78 True local misassembly 3322194 3323325 322520 321389 CM091754.1 scf7180002755026 99.73 True local misassembly 3321245 3321970 323246 322521 CM091754.1 scf7180002755026 99.45 True relocation, scaffold gap is present, inconsistency = -16798 3299391 3321260 361970 340029 CM091754.1 scf7180002755026 98.97 True translocation 12652339 12669233 378589 361971 CM091755.1 scf7180002755026 97.49 True CONTIG scf7180002755026 378589 misassembled 15904468 15914448 9973 1 CM091757.1 scf7180002755041 99.17 True local misassembly 15898446 15900660 12224 9974 CM091757.1 scf7180002755041 99.56 True fake: scaffold gap size wrong estimation (local) 15894203 15896450 16454 14211 CM091757.1 scf7180002755041 96.55 True translocation 4112320 4121476 25612 16455 CM091754.1 scf7180002755041 99.86 True fake: scaffold gap size wrong estimation (extensive) 4030395 4112001 115186 33568 CM091754.1 scf7180002755041 99.96 True CONTIG scf7180002755041 115186 misassembled 2729825 2740679 191 11064 CM091757.1 scf7180002755042 99.15 True fake: scaffold gap size wrong estimation (local) 2740689 2751458 15356 26170 CM091757.1 scf7180002755042 98.69 True relocation, scaffold gap is present, inconsistency = -10207 2751490 2760125 36409 45046 CM091757.1 scf7180002755042 98.95 True indel: indel (> 5bp) 2760530 2786242 45458 70875 CM091757.1 scf7180002755042 98.13 True relocation, scaffold gap is present, inconsistency = -14172 2786264 2796226 85069 95043 CM091757.1 scf7180002755042 99.16 True fake: scaffold gap size wrong estimation (extensive) 2796967 2804685 103899 111608 CM091757.1 scf7180002755042 99.05 True fake: scaffold gap size wrong estimation (local) 2804980 2807080 112163 114265 CM091757.1 scf7180002755042 99.57 True fake: scaffold gap size wrong estimation (local) 2807385 2825282 115744 133655 CM091757.1 scf7180002755042 99.29 True relocation, scaffold gap is present, inconsistency = -13906 2825285 2856167 147564 178642 CM091757.1 scf7180002755042 98.46 True indel: indel (> 5bp) 2856202 2862449 178696 184969 CM091757.1 scf7180002755042 99.03 True relocation, scaffold gap is present, inconsistency = -20660 2863628 2864750 206808 207930 CM091757.1 scf7180002755042 99.38 True local misassembly 2865452 2866808 208632 209988 CM091757.1 scf7180002755042 99.12 True indel: indel (<= 5bp) 2866812 2867808 209989 210985 CM091757.1 scf7180002755042 99.9 True fake: scaffold gap size wrong estimation (local) 2867845 2868429 215085 215669 CM091757.1 scf7180002755042 99.32 True fake: scaffold gap size wrong estimation (local) 2868946 2870172 215932 217158 CM091757.1 scf7180002755042 99.51 True indel: indel (> 5bp) 2870296 2870855 217295 217854 CM091757.1 scf7180002755042 99.82 True indel: indel (<= 5bp) 2871044 2872421 218039 219416 CM091757.1 scf7180002755042 99.49 True indel: indel (<= 5bp) 2872425 2873047 219417 220039 CM091757.1 scf7180002755042 99.04 True local misassembly 2873243 2874158 220078 220993 CM091757.1 scf7180002755042 99.56 True indel: indel (> 5bp) 2874173 2875719 220994 222540 CM091757.1 scf7180002755042 99.81 True local misassembly 2875701 2916764 223236 264306 CM091757.1 scf7180002755042 99.26 True relocation, scaffold gap is present, inconsistency = -48121 2868898 2869418 264561 265082 CM091757.1 scf7180002755042 99.52 True fake: scaffold gap size wrong estimation (local) 2917168 3011418 313045 407464 CM091757.1 scf7180002755042 99.35 True fake: scaffold gap size wrong estimation (local) 3011434 3025259 411004 424488 CM091757.1 scf7180002755042 96.7 True fake: scaffold gap size wrong estimation (local) 3025667 3038229 424912 437474 CM091757.1 scf7180002755042 99.13 True relocation, scaffold gap is present, inconsistency = -11368 3038247 3058494 448860 468587 CM091757.1 scf7180002755042 96.04 True fake: scaffold gap size wrong estimation (local) 3058808 3060393 470302 471887 CM091757.1 scf7180002755042 98.8 True fake: scaffold gap size wrong estimation (local) 3060326 3061255 473411 474342 CM091757.1 scf7180002755042 97.97 True fake: scaffold gap size wrong estimation (local) 3062087 3063935 475352 477200 CM091757.1 scf7180002755042 99.62 True local misassembly 3064558 3066257 477367 479066 CM091757.1 scf7180002755042 98.35 True local misassembly 3066801 3067337 479611 480147 CM091757.1 scf7180002755042 99.44 True indel: stretch of mismatches 3067349 3069720 480159 482530 CM091757.1 scf7180002755042 99.54 True indel: stretch of mismatches 3069837 3070442 482647 483252 CM091757.1 scf7180002755042 100.0 True fake: scaffold gap size wrong estimation (local) 3070842 3086817 489723 505711 CM091757.1 scf7180002755042 98.86 True fake: scaffold gap size wrong estimation (local) 3087065 3114559 505957 533426 CM091757.1 scf7180002755042 99.05 True fake: scaffold gap size wrong estimation (local) 3114681 3115890 533548 534757 CM091757.1 scf7180002755042 99.83 True indel: indel (<= 5bp) 3115891 3116771 534762 535642 CM091757.1 scf7180002755042 98.75 True local misassembly 3117968 3120001 536119 538152 CM091757.1 scf7180002755042 99.46 True fake: scaffold gap size wrong estimation (local) 3120378 3120923 538555 539100 CM091757.1 scf7180002755042 99.27 True fake: scaffold gap size wrong estimation (local) 3121291 3139788 539468 558009 CM091757.1 scf7180002755042 99.1 True indel: indel (<= 5bp) 3139855 3206865 558081 625189 CM091757.1 scf7180002755042 99.18 True fake: scaffold gap size wrong estimation (extensive) 3207138 3239118 635120 667131 CM091757.1 scf7180002755042 99.45 True relocation, scaffold gap is present, inconsistency = -31317 3239136 3276017 698466 734976 CM091757.1 scf7180002755042 98.27 True fake: scaffold gap size wrong estimation (local) 3277454 3279468 736349 738369 CM091757.1 scf7180002755042 98.6 True local misassembly 3280459 3281681 739504 740726 CM091757.1 scf7180002755042 96.97 True indel: indel (<= 5bp) 3281683 3282599 740727 741643 CM091757.1 scf7180002755042 99.56 True indel: indel (<= 5bp) 3282906 3283440 741955 742489 CM091757.1 scf7180002755042 98.13 True fake: scaffold gap size wrong estimation (local) 3288270 3294666 743700 750110 CM091757.1 scf7180002755042 98.91 True fake: scaffold gap size wrong estimation (local) 3295418 3305331 754357 764266 CM091757.1 scf7180002755042 98.52 True indel: indel (> 5bp) 3305664 3306553 764657 765550 CM091757.1 scf7180002755042 98.55 True indel: indel (<= 5bp) 3306579 3308267 765579 767268 CM091757.1 scf7180002755042 99.64 True indel: indel (<= 5bp) 3308630 3310014 767630 769014 CM091757.1 scf7180002755042 98.99 True local misassembly 3310239 3311217 769015 769993 CM091757.1 scf7180002755042 97.24 True local misassembly 3311847 3326631 770623 785366 CM091757.1 scf7180002755042 99.19 True translocation, scaffold gap is present 9862400 9863905 796467 797971 CM091765.1 scf7180002755042 99.93 True translocation, scaffold gap is present 3326625 3333333 797992 804687 CM091757.1 scf7180002755042 99.18 True fake: scaffold gap size wrong estimation (local) 3333349 3358591 807944 833204 CM091757.1 scf7180002755042 99.29 True relocation, scaffold gap is present, inconsistency = -25387 3358659 3361577 858659 861577 CM091757.1 scf7180002755042 99.59 True fake: scaffold gap size wrong estimation (local) 3361647 3422959 861643 922800 CM091757.1 scf7180002755042 98.95 True relocation, scaffold gap is present, inconsistency = -54905 3422973 3552614 977719 1107305 CM091757.1 scf7180002755042 99.68 True CONTIG scf7180002755042 1107309 misassembled 16827637 16840294 12412 1 CM091756.1 scf7180002755043 97.91 True fake: scaffold gap size wrong estimation (local) 16821262 16827200 19816 13877 CM091756.1 scf7180002755043 99.73 True indel: indel (<= 5bp) 16814003 16821162 27072 19913 CM091756.1 scf7180002755043 99.94 True translocation, scaffold gap is present 11480342 11483323 35912 32931 CM091765.1 scf7180002755043 99.93 True fake: not a misassembly (possible transposable element) 16812699 16814122 38897 37474 CM091756.1 scf7180002755043 99.93 True fake: not a misassembly (possible transposable element) 11477242 11480027 42865 40079 CM091765.1 scf7180002755043 99.96 True translocation, scaffold gap is present 16810432 16812686 45140 42886 CM091756.1 scf7180002755043 99.96 True fake: scaffold gap size wrong estimation (local) 16808562 16809168 47230 46624 CM091756.1 scf7180002755043 99.67 True fake: not a misassembly (possible transposable element) 11185544 11187721 48016 50192 CM091765.1 scf7180002755043 99.54 True fake: not a misassembly (possible transposable element) 16805980 16807389 51622 50213 CM091756.1 scf7180002755043 99.65 True fake: scaffold gap size wrong estimation (local) 16801530 16805979 57667 53218 CM091756.1 scf7180002755043 99.98 True indel: indel (<= 5bp) 16800313 16801528 58883 57668 CM091756.1 scf7180002755043 99.92 True fake: scaffold gap size wrong estimation (local) 16798026 16800139 61518 59406 CM091756.1 scf7180002755043 99.95 True fake: scaffold gap size wrong estimation (local) 16782987 16795300 74487 62496 CM091756.1 scf7180002755043 97.24 True fake: scaffold gap size wrong estimation (local) 16764104 16782529 96973 78828 CM091756.1 scf7180002755043 97.69 True CONTIG scf7180002755043 96973 misassembled 2627788 2632802 559 5573 CM091754.1 scf7180002755044 99.92 True indel: indel (<= 5bp) 2632804 2633985 5574 6755 CM091754.1 scf7180002755044 99.75 True indel: indel (> 5bp) 2633995 2634703 6792 7500 CM091754.1 scf7180002755044 99.72 True indel: indel (<= 5bp) 2634705 2635485 7501 8281 CM091754.1 scf7180002755044 99.49 True indel: indel (> 5bp) 2635486 2636391 8288 9193 CM091754.1 scf7180002755044 99.89 True indel: indel (> 5bp) 2636392 2639215 9269 12092 CM091754.1 scf7180002755044 99.65 True indel: indel (<= 5bp) 2639217 2639723 12093 12599 CM091754.1 scf7180002755044 98.42 True indel: indel (<= 5bp) 2639729 2641320 12600 14191 CM091754.1 scf7180002755044 98.99 True indel: indel (<= 5bp) 2641323 2641944 14192 14813 CM091754.1 scf7180002755044 98.71 True fake: scaffold gap size wrong estimation (local) 2644407 2645602 17284 18479 CM091754.1 scf7180002755044 99.41 True local misassembly 2646333 2647176 19219 20062 CM091754.1 scf7180002755044 99.64 True indel: indel (> 5bp) 2647467 2648271 20344 21148 CM091754.1 scf7180002755044 97.39 True local misassembly 2649066 2649988 21648 22570 CM091754.1 scf7180002755044 99.46 True indel: indel (<= 5bp) 2649989 2653699 22572 26282 CM091754.1 scf7180002755044 99.41 True indel: indel (<= 5bp) 2654060 2654805 26645 27390 CM091754.1 scf7180002755044 99.2 True indel: indel (> 5bp) 2654815 2655732 27391 28308 CM091754.1 scf7180002755044 99.24 True local misassembly 2657257 2658068 28789 29600 CM091754.1 scf7180002755044 99.51 True indel: indel (<= 5bp) 2658070 2658605 29601 30136 CM091754.1 scf7180002755044 99.63 True fake: scaffold gap size wrong estimation (local) 2660147 2660927 31665 32445 CM091754.1 scf7180002755044 98.85 True fake: scaffold gap size wrong estimation (local) 2662086 2663492 33009 34415 CM091754.1 scf7180002755044 99.57 True indel: indel (<= 5bp) 2663494 2664345 34416 35267 CM091754.1 scf7180002755044 98.59 True indel: indel (<= 5bp) 2664347 2665204 35268 36125 CM091754.1 scf7180002755044 99.07 True indel: indel (> 5bp) 2665550 2667047 36458 37955 CM091754.1 scf7180002755044 99.67 True indel: indel (<= 5bp) 2667500 2668485 38410 39395 CM091754.1 scf7180002755044 99.7 True fake: scaffold gap size wrong estimation (local) 2669074 2669746 40049 40721 CM091754.1 scf7180002755044 99.11 True fake: scaffold gap size wrong estimation (local) 2669989 2678261 41291 49676 CM091754.1 scf7180002755044 97.43 True fake: scaffold gap size wrong estimation (local) 2678480 2679580 49895 50995 CM091754.1 scf7180002755044 98.91 True fake: scaffold gap size wrong estimation (local) 2680886 2682566 52283 53963 CM091754.1 scf7180002755044 99.17 True indel: indel (<= 5bp) 2682950 2683521 54350 54921 CM091754.1 scf7180002755044 99.83 True indel: indel (<= 5bp) 2683522 2684317 54923 55718 CM091754.1 scf7180002755044 99.62 True indel: indel (> 5bp) 2684368 2685515 55759 56906 CM091754.1 scf7180002755044 99.3 True local misassembly 2685876 2687395 56907 58426 CM091754.1 scf7180002755044 99.34 True fake: scaffold gap size wrong estimation (local) 2688225 2689833 59259 60867 CM091754.1 scf7180002755044 99.38 True indel: indel (<= 5bp) 2689834 2690737 60869 61772 CM091754.1 scf7180002755044 99.34 True local misassembly 2692240 2692775 62779 63314 CM091754.1 scf7180002755044 99.44 True local misassembly 2694231 2694825 64778 65372 CM091754.1 scf7180002755044 99.5 True indel: indel (<= 5bp) 2694826 2695447 65374 65995 CM091754.1 scf7180002755044 99.2 True fake: scaffold gap size wrong estimation (local) 2696450 2700634 67071 71204 CM091754.1 scf7180002755044 96.39 True local misassembly 2701460 2702537 72059 73136 CM091754.1 scf7180002755044 98.7 True local misassembly 2703397 2704066 73137 73806 CM091754.1 scf7180002755044 98.66 True local misassembly 2705275 2706087 75023 75835 CM091754.1 scf7180002755044 99.63 True indel: indel (<= 5bp) 2706165 2707100 75915 76850 CM091754.1 scf7180002755044 99.36 True indel: stretch of mismatches 2707143 2708063 76893 77813 CM091754.1 scf7180002755044 98.26 True local misassembly 2709293 2710052 78213 78972 CM091754.1 scf7180002755044 99.74 True indel: indel (<= 5bp) 2710208 2710839 79131 79762 CM091754.1 scf7180002755044 99.68 True indel: indel (<= 5bp) 2710872 2711428 79798 80354 CM091754.1 scf7180002755044 98.92 True indel: indel (<= 5bp) 2711795 2712717 80718 81640 CM091754.1 scf7180002755044 99.67 True indel: indel (<= 5bp) 2712952 2713763 81872 82683 CM091754.1 scf7180002755044 98.77 True local misassembly 2714481 2716013 83065 84597 CM091754.1 scf7180002755044 99.54 True local misassembly 2717074 2718540 84829 86295 CM091754.1 scf7180002755044 99.39 True fake: scaffold gap size wrong estimation (local) 2720149 2720668 87921 88440 CM091754.1 scf7180002755044 98.65 True indel: indel (<= 5bp) 2720915 2721681 88689 89455 CM091754.1 scf7180002755044 99.87 True local misassembly 2722626 2723344 90405 91123 CM091754.1 scf7180002755044 100.0 True local misassembly 2725786 2726725 93569 94508 CM091754.1 scf7180002755044 99.79 True indel: indel (<= 5bp) 2726726 2727253 94510 95037 CM091754.1 scf7180002755044 99.43 True local misassembly 2727793 2728956 95552 96715 CM091754.1 scf7180002755044 96.56 True fake: scaffold gap size wrong estimation (local) 2728957 2730298 102167 103508 CM091754.1 scf7180002755044 98.14 True indel: indel (> 5bp) 2730748 2731487 103995 104734 CM091754.1 scf7180002755044 99.19 True indel: indel (> 5bp) 2731949 2734354 105229 107651 CM091754.1 scf7180002755044 97.37 True fake: scaffold gap size wrong estimation (local) 2736552 2741187 107685 112357 CM091754.1 scf7180002755044 98.22 True local misassembly 2743162 2744024 113712 114574 CM091754.1 scf7180002755044 99.42 True local misassembly 2745092 2746080 114575 115563 CM091754.1 scf7180002755044 99.39 True fake: scaffold gap size wrong estimation (local) 2747645 2748317 116702 117374 CM091754.1 scf7180002755044 98.51 True indel: indel (<= 5bp) 2748320 2749006 117375 118061 CM091754.1 scf7180002755044 99.56 True local misassembly 2750170 2751270 118197 119297 CM091754.1 scf7180002755044 99.27 True local misassembly 2752309 2753575 119934 121200 CM091754.1 scf7180002755044 99.61 True indel: indel (<= 5bp) 2753578 2754468 121201 122091 CM091754.1 scf7180002755044 98.09 True local misassembly 2756415 2757533 123066 124184 CM091754.1 scf7180002755044 99.46 True local misassembly 2758187 2817605 124597 181767 CM091754.1 scf7180002755044 95.36 True fake: scaffold gap size wrong estimation (local) 2817459 2827520 184953 194951 CM091754.1 scf7180002755044 98.42 True fake: scaffold gap size wrong estimation (local) 2830013 2832421 196392 198800 CM091754.1 scf7180002755044 99.79 True indel: indel (<= 5bp) 2832422 2834961 198802 201341 CM091754.1 scf7180002755044 99.76 True indel: indel (<= 5bp) 2834962 2837076 201343 203457 CM091754.1 scf7180002755044 99.76 True indel: indel (<= 5bp) 2837078 2837615 203458 203995 CM091754.1 scf7180002755044 100.0 True indel: indel (<= 5bp) 2837950 2840363 204326 206739 CM091754.1 scf7180002755044 99.67 True indel: indel (<= 5bp) 2840379 2841005 206759 207385 CM091754.1 scf7180002755044 99.84 True indel: indel (<= 5bp) 2841349 2842654 207727 209032 CM091754.1 scf7180002755044 99.92 True indel: indel (<= 5bp) 2842656 2844645 209033 211022 CM091754.1 scf7180002755044 99.95 True indel: indel (> 5bp) 2844686 2845716 211041 212071 CM091754.1 scf7180002755044 99.22 True indel: indel (<= 5bp) 2845718 2848638 212072 214992 CM091754.1 scf7180002755044 99.79 True fake: scaffold gap size wrong estimation (local) 2849231 2850274 215539 216582 CM091754.1 scf7180002755044 99.23 True indel: indel (<= 5bp) 2850275 2851139 216584 217448 CM091754.1 scf7180002755044 99.77 True local misassembly 2851494 2852960 217624 219090 CM091754.1 scf7180002755044 98.7 True local misassembly 2853502 2854084 219091 219673 CM091754.1 scf7180002755044 95.03 True indel: indel (<= 5bp) 2854085 2854850 219676 220441 CM091754.1 scf7180002755044 98.83 True indel: indel (<= 5bp) 2854852 2856041 220442 221631 CM091754.1 scf7180002755044 99.58 True local misassembly 2856181 2856989 221632 222440 CM091754.1 scf7180002755044 96.66 True indel: indel (> 5bp) 2857334 2858832 222770 224268 CM091754.1 scf7180002755044 99.13 True indel: indel (> 5bp) 2859319 2862108 224749 227538 CM091754.1 scf7180002755044 99.39 True local misassembly 2862729 2864108 227547 228926 CM091754.1 scf7180002755044 98.7 True local misassembly 2866289 2883563 229819 246672 CM091754.1 scf7180002755044 95.2 True relocation, scaffold gap is present, inconsistency = 12561 2896565 2901726 247113 252270 CM091754.1 scf7180002755044 99.25 True local misassembly 2902314 2908147 252271 258119 CM091754.1 scf7180002755044 99.2 True relocation, scaffold gap is present, inconsistency = -29844 2884263 2885220 264079 265032 CM091754.1 scf7180002755044 97.51 True indel: indel (> 5bp) 2885288 2894495 265134 274361 CM091754.1 scf7180002755044 99.38 True fake: scaffold gap size wrong estimation (extensive) 2908244 2908916 279855 280527 CM091754.1 scf7180002755044 98.66 True fake: scaffold gap size wrong estimation (local) 2910794 2919665 282999 291715 CM091754.1 scf7180002755044 96.25 True indel: indel (> 5bp) 2919710 2925804 291747 297864 CM091754.1 scf7180002755044 98.48 True relocation, scaffold gap is present, inconsistency = -12011 2920934 2921435 305005 305506 CM091754.1 scf7180002755044 99.8 True fake: scaffold gap size wrong estimation (local) 2925877 2927647 309959 311729 CM091754.1 scf7180002755044 99.15 True fake: scaffold gap size wrong estimation (local) 2928949 2930049 312423 313523 CM091754.1 scf7180002755044 99.36 True local misassembly 2930714 2931495 314194 314975 CM091754.1 scf7180002755044 99.23 True indel: indel (> 5bp) 2931942 2932546 315409 316013 CM091754.1 scf7180002755044 99.17 True local misassembly 2934066 2934706 317543 318183 CM091754.1 scf7180002755044 99.84 True fake: scaffold gap size wrong estimation (local) 2936197 2936798 319626 320227 CM091754.1 scf7180002755044 98.84 True local misassembly 2937763 2939900 321190 323327 CM091754.1 scf7180002755044 99.53 True local misassembly 2942229 2942879 325192 325842 CM091754.1 scf7180002755044 99.54 True local misassembly 2944748 2948329 327737 331300 CM091754.1 scf7180002755044 97.81 True fake: scaffold gap size wrong estimation (local) 2949274 2959104 337699 347256 CM091754.1 scf7180002755044 96.1 True fake: scaffold gap size wrong estimation (local) 2959641 2969170 348431 357990 CM091754.1 scf7180002755044 98.29 True relocation, inconsistency = 50838 3020289 3021225 358271 359211 CM091754.1 scf7180002755044 98.3 True indel: indel (> 5bp) 3021260 3025408 359302 363570 CM091754.1 scf7180002755044 96.51 True fake: scaffold gap size wrong estimation (local) 3025786 3033798 367238 375283 CM091754.1 scf7180002755044 98.51 True translocation, scaffold gap is present 1679260 1680558 377233 375934 CM091753.1 scf7180002755044 99.85 True translocation, scaffold gap is present 3033567 3042641 384525 393629 CM091754.1 scf7180002755044 99.1 True translocation 11051325 11092301 393630 434563 CM091759.1 scf7180002755044 99.47 True indel: indel (> 5bp) 11092354 11093211 434628 435485 CM091759.1 scf7180002755044 100.0 True fake: scaffold gap size wrong estimation (extensive) 11093552 11132116 445640 484236 CM091759.1 scf7180002755044 99.61 True relocation, scaffold gap is present, inconsistency = -38532 11132185 11146077 522837 536737 CM091759.1 scf7180002755044 99.58 True local misassembly 11148387 11150607 537087 539307 CM091759.1 scf7180002755044 99.64 True indel: indel (<= 5bp) 11150608 11151683 539309 540384 CM091759.1 scf7180002755044 99.91 True indel: indel (<= 5bp) 11151684 11152329 540386 541031 CM091759.1 scf7180002755044 99.85 True indel: indel (<= 5bp) 11152727 11153691 541425 542389 CM091759.1 scf7180002755044 99.79 True indel: indel (<= 5bp) 11153693 11156147 542390 544844 CM091759.1 scf7180002755044 99.88 True fake: scaffold gap size wrong estimation (local) 11156320 11159211 545015 547906 CM091759.1 scf7180002755044 99.48 True fake: scaffold gap size wrong estimation (local) 11160903 11216573 549008 604421 CM091759.1 scf7180002755044 98.23 True fake: scaffold gap size wrong estimation (local) 11216970 11233442 606191 622530 CM091759.1 scf7180002755044 98.38 True indel: indel (> 5bp) 11233588 11254972 622729 644140 CM091759.1 scf7180002755044 99.54 True relocation, scaffold gap is present, inconsistency = -26749 11254938 11255763 670855 671680 CM091759.1 scf7180002755044 99.88 True local misassembly 11256656 11284044 672495 699857 CM091759.1 scf7180002755044 99.59 True relocation, scaffold gap is present, inconsistency = -11631 11285139 11387412 712583 816172 CM091759.1 scf7180002755044 99.38 True indel: indel (> 5bp) 11387697 11400471 816466 829241 CM091759.1 scf7180002755044 99.56 True fake: scaffold gap size wrong estimation (local) 11400498 11478920 830923 908686 CM091759.1 scf7180002755044 98.69 True relocation, scaffold gap is present, inconsistency = -76958 11478937 11758060 985661 1264543 CM091759.1 scf7180002755044 99.4 True translocation 20084058 20085357 1264544 1265850 CM091751.1 scf7180002755044 98.7 True fake: scaffold gap size wrong estimation (local) 20085537 20090795 1272898 1278151 CM091751.1 scf7180002755044 98.96 True indel: indel (> 5bp) 20090937 20093024 1278358 1280478 CM091751.1 scf7180002755044 97.36 True fake: scaffold gap size wrong estimation (extensive) 20093018 20093717 1287932 1288634 CM091751.1 scf7180002755044 98.44 True fake: scaffold gap size wrong estimation (local) 20096538 20099238 1289334 1292039 CM091751.1 scf7180002755044 98.97 True local misassembly 20093670 20095406 1292060 1293808 CM091751.1 scf7180002755044 98.17 True translocation, scaffold gap is present 15758055 15758582 1297262 1297789 CM091757.1 scf7180002755044 99.28 True translocation 8334263 8336703 1300229 1297790 CM091767.1 scf7180002755044 97.88 True translocation, scaffold gap is present 20099263 20110389 1301144 1311980 CM091751.1 scf7180002755044 96.25 True fake: scaffold gap size wrong estimation (local) 20110502 20111511 1318952 1319967 CM091751.1 scf7180002755044 97.64 True fake: scaffold gap size wrong estimation (local) 20111781 20114640 1320216 1323080 CM091751.1 scf7180002755044 99.41 True fake: scaffold gap size wrong estimation (local) 20115308 20118790 1323184 1326677 CM091751.1 scf7180002755044 99.03 True translocation, scaffold gap is present 1203351 1205105 1331937 1330179 CM091752.1 scf7180002755044 99.43 True fake: scaffold gap size wrong estimation (local) 1191268 1200804 1342459 1333194 CM091752.1 scf7180002755044 96.17 True fake: scaffold gap size wrong estimation (extensive) 1188413 1189139 1352521 1351795 CM091752.1 scf7180002755044 100.0 True indel: indel (> 5bp) 1186534 1188122 1354415 1352827 CM091752.1 scf7180002755044 99.18 True indel: indel (<= 5bp) 1185733 1186533 1355217 1354417 CM091752.1 scf7180002755044 99.25 True indel: indel (> 5bp) 1184641 1185732 1356321 1355230 CM091752.1 scf7180002755044 98.53 True local misassembly 1182262 1183628 1358262 1356896 CM091752.1 scf7180002755044 99.2 True indel: indel (<= 5bp) 1180631 1182261 1359894 1358264 CM091752.1 scf7180002755044 99.94 True fake: scaffold gap size wrong estimation (local) 1178771 1180129 1361393 1360035 CM091752.1 scf7180002755044 99.93 True fake: scaffold gap size wrong estimation (local) 1177155 1178191 1363049 1362013 CM091752.1 scf7180002755044 99.42 True translocation, scaffold gap is present 4371112 4391425 1383630 1363259 CM091767.1 scf7180002755044 98.94 True relocation, scaffold gap is present, inconsistency = 61103 4472654 4481972 1403756 1413111 CM091767.1 scf7180002755044 98.95 True fake: scaffold gap size wrong estimation (local) 4482228 4495491 1413678 1427021 CM091767.1 scf7180002755044 98.47 True relocation, scaffold gap is present, inconsistency = -12797 4495377 4627861 1439704 1572255 CM091767.1 scf7180002755044 99.36 True fake: scaffold gap size wrong estimation (local) 4633614 4654811 1578046 1599259 CM091767.1 scf7180002755044 99.44 True fake: scaffold gap size wrong estimation (extensive) 4654831 4718688 1607456 1669529 CM091767.1 scf7180002755044 96.12 True fake: scaffold gap size wrong estimation (extensive) 4718687 4722712 1677020 1681048 CM091767.1 scf7180002755044 99.65 True local misassembly 4723138 4771976 1681321 1730067 CM091767.1 scf7180002755044 99.09 True CONTIG scf7180002755044 1730067 misassembled 169573 172049 2730 258 CM091761.1 scf7180002755045 99.72 True fake: scaffold gap size wrong estimation (local) 165431 168423 7099 4107 CM091761.1 scf7180002755045 99.93 True translocation, scaffold gap is present 209761 212570 7247 10056 CM091760.1 scf7180002755045 100.0 True translocation, scaffold gap is present 15683572 15684311 12373 13112 CM091757.1 scf7180002755045 99.73 True translocation, scaffold gap is present 163520 164125 14005 13401 CM091761.1 scf7180002755045 99.83 True fake: not a misassembly (possible transposable element) 213795 219794 14026 20024 CM091760.1 scf7180002755045 99.93 True fake: not a misassembly (possible transposable element) 161134 162477 22592 21246 CM091761.1 scf7180002755045 99.7 True fake: scaffold gap size wrong estimation (local) 159356 160683 24248 22915 CM091761.1 scf7180002755045 99.48 True fake: not a misassembly (possible transposable element) 4146912 4151574 24269 28953 CM091762.1 scf7180002755045 99.13 True fake: not a misassembly (possible transposable element) 153112 159161 35041 28991 CM091761.1 scf7180002755045 99.92 True translocation, scaffold gap is present 219837 221688 35956 37808 CM091760.1 scf7180002755045 99.57 True fake: scaffold gap size wrong estimation (local) 221929 224325 39729 42118 CM091760.1 scf7180002755045 99.12 True translocation 15849160 15849781 42740 42119 CM091757.1 scf7180002755045 100.0 True translocation, scaffold gap is present 4151485 4180411 42850 71741 CM091762.1 scf7180002755045 99.34 True relocation, scaffold gap is present, inconsistency = -27109 4179957 4181397 98396 99876 CM091762.1 scf7180002755045 98.18 True fake: scaffold gap size wrong estimation (local) 4181707 4196606 100190 115113 CM091762.1 scf7180002755045 99.06 True relocation, scaffold gap is present, inconsistency = -10277 4196920 4197471 125704 126255 CM091762.1 scf7180002755045 98.73 True indel: indel (<= 5bp) 4197472 4198831 126259 127618 CM091762.1 scf7180002755045 99.34 True local misassembly 4199830 4200923 127619 128712 CM091762.1 scf7180002755045 99.54 True indel: indel (<= 5bp) 4201216 4206337 129003 134124 CM091762.1 scf7180002755045 99.22 True indel: indel (<= 5bp) 4206339 4206963 134125 134749 CM091762.1 scf7180002755045 99.52 True fake: scaffold gap size wrong estimation (local) 4219005 4219739 141755 142489 CM091762.1 scf7180002755045 99.46 True fake: scaffold gap size wrong estimation (local) 4221901 4242163 142510 162747 CM091762.1 scf7180002755045 99.57 True relocation, scaffold gap is present, inconsistency = -20485 4223300 4223964 164369 165041 CM091762.1 scf7180002755045 97.62 True fake: scaffold gap size wrong estimation (local) 4242183 4313211 183243 253586 CM091762.1 scf7180002755045 98.45 True indel: indel (<= 5bp) 4313236 4475439 253610 415869 CM091762.1 scf7180002755045 99.44 True relocation, scaffold gap is present, inconsistency = -13264 4475432 4476295 429126 429989 CM091762.1 scf7180002755045 99.88 True indel: indel (<= 5bp) 4476296 4477159 429991 430854 CM091762.1 scf7180002755045 100.0 True indel: indel (<= 5bp) 4477338 4478001 431035 431698 CM091762.1 scf7180002755045 99.85 True indel: stretch of mismatches 4478120 4478867 431817 432564 CM091762.1 scf7180002755045 99.6 True indel: indel (<= 5bp) 4479221 4479834 432915 433528 CM091762.1 scf7180002755045 99.84 True indel: stretch of mismatches 4480060 4480735 433754 434429 CM091762.1 scf7180002755045 99.7 True local misassembly 4481577 4483315 435266 437004 CM091762.1 scf7180002755045 99.6 True indel: indel (> 5bp) 4483727 4484297 437424 437994 CM091762.1 scf7180002755045 99.65 True local misassembly 4489316 4489894 437995 438573 CM091762.1 scf7180002755045 100.0 True indel: indel (> 5bp) 4489901 4490526 438574 439199 CM091762.1 scf7180002755045 99.68 True indel: indel (<= 5bp) 4490527 4493305 439204 441982 CM091762.1 scf7180002755045 99.64 True indel: indel (<= 5bp) 4493788 4495923 442468 444603 CM091762.1 scf7180002755045 99.67 True indel: indel (<= 5bp) 4495925 4497588 444604 446267 CM091762.1 scf7180002755045 99.58 True indel: indel (<= 5bp) 4497589 4498182 446270 446863 CM091762.1 scf7180002755045 99.83 True indel: indel (<= 5bp) 4498183 4498856 446865 447538 CM091762.1 scf7180002755045 99.85 True indel: indel (<= 5bp) 4498858 4499558 447539 448239 CM091762.1 scf7180002755045 100.0 True indel: indel (<= 5bp) 4499559 4502565 448241 451247 CM091762.1 scf7180002755045 99.87 True indel: indel (> 5bp) 4502566 4504531 451272 453237 CM091762.1 scf7180002755045 99.69 True indel: stretch of mismatches 4504613 4516452 453319 465158 CM091762.1 scf7180002755045 99.72 True relocation, scaffold gap is present, inconsistency = -17123 4516437 4533822 482266 499739 CM091762.1 scf7180002755045 98.24 True relocation, scaffold gap is present, inconsistency = -12812 4533833 4543029 512562 521748 CM091762.1 scf7180002755045 99.6 True fake: scaffold gap size wrong estimation (extensive) 4543043 4565943 530597 553562 CM091762.1 scf7180002755045 99.47 True CONTIG scf7180002755045 553594 misassembled 15117117 15119673 2535 1 CM091758.1 scf7180002755046 98.44 True fake: scaffold gap size wrong estimation (local) 15115772 15116671 3976 3077 CM091758.1 scf7180002755046 98.67 True indel: indel (<= 5bp) 15115054 15115771 4695 3978 CM091758.1 scf7180002755046 99.72 True indel: indel (> 5bp) 15113910 15114648 5820 5082 CM091758.1 scf7180002755046 99.86 True local misassembly 15111488 15112274 7886 7100 CM091758.1 scf7180002755046 99.62 True indel: indel (<= 5bp) 15109776 15111487 9599 7888 CM091758.1 scf7180002755046 99.18 True local misassembly 15107283 15108387 12101 10997 CM091758.1 scf7180002755046 99.19 True local misassembly 15066775 15106320 51639 12481 CM091758.1 scf7180002755046 97.29 True fake: scaffold gap size wrong estimation (extensive) 14989540 15066882 138404 61319 CM091758.1 scf7180002755046 98.86 True fake: scaffold gap size wrong estimation (local) 14987453 14988691 139903 138665 CM091758.1 scf7180002755046 99.92 True indel: indel (> 5bp) 14986822 14987452 140564 139934 CM091758.1 scf7180002755046 98.89 True indel: indel (<= 5bp) 14986006 14986821 141384 140569 CM091758.1 scf7180002755046 97.3 True local misassembly 14984717 14985434 142370 141653 CM091758.1 scf7180002755046 99.3 True local misassembly 14982561 14983755 144530 143336 CM091758.1 scf7180002755046 99.33 True indel: indel (<= 5bp) 14981260 14982557 145828 144531 CM091758.1 scf7180002755046 97.38 True local misassembly 14978748 14980256 147668 146160 CM091758.1 scf7180002755046 99.07 True indel: indel (> 5bp) 14977686 14978735 148737 147688 CM091758.1 scf7180002755046 99.81 True indel: indel (<= 5bp) 14976655 14977685 149769 148739 CM091758.1 scf7180002755046 99.52 True indel: indel (> 5bp) 14974748 14976654 151682 149776 CM091758.1 scf7180002755046 99.69 True indel: indel (<= 5bp) 14974192 14974747 152243 151688 CM091758.1 scf7180002755046 99.46 True local misassembly 14971910 14973237 154160 152833 CM091758.1 scf7180002755046 99.32 True fake: scaffold gap size wrong estimation (local) 14968290 14970831 157821 155280 CM091758.1 scf7180002755046 98.78 True local misassembly 14967328 14968190 158684 157822 CM091758.1 scf7180002755046 99.54 True indel: indel (<= 5bp) 14966755 14967327 159258 158686 CM091758.1 scf7180002755046 99.3 True indel: indel (<= 5bp) 14965362 14966740 160647 159269 CM091758.1 scf7180002755046 98.11 True local misassembly 14963799 14965067 161916 160648 CM091758.1 scf7180002755046 99.61 True fake: scaffold gap size wrong estimation (local) 14954153 14963596 171657 162224 CM091758.1 scf7180002755046 99.15 True fake: not a misassembly (possible transposable element) 972370 976605 175887 171669 CM091757.1 scf7180002755046 99.34 True fake: not a misassembly (possible transposable element) 14911937 14954037 217044 175908 CM091758.1 scf7180002755046 97.03 True local misassembly 14910178 14911003 217975 217150 CM091758.1 scf7180002755046 99.52 True local misassembly 14907769 14909217 220378 218930 CM091758.1 scf7180002755046 99.59 True fake: scaffold gap size wrong estimation (local) 14906302 14907289 221800 220813 CM091758.1 scf7180002755046 99.09 True indel: indel (<= 5bp) 14905261 14906298 222838 221801 CM091758.1 scf7180002755046 100.0 True indel: indel (<= 5bp) 14904494 14905254 223608 222848 CM091758.1 scf7180002755046 99.87 True indel: indel (<= 5bp) 14902980 14904492 225121 223609 CM091758.1 scf7180002755046 99.93 True fake: scaffold gap size wrong estimation (local) 14899578 14901502 227826 225902 CM091758.1 scf7180002755046 99.69 True indel: indel (<= 5bp) 14898858 14899577 228548 227829 CM091758.1 scf7180002755046 99.86 True fake: scaffold gap size wrong estimation (local) 14887932 14898124 239349 229425 CM091758.1 scf7180002755046 96.39 True fake: scaffold gap size wrong estimation (local) 14883941 14887809 243320 239447 CM091758.1 scf7180002755046 99.46 True fake: scaffold gap size wrong estimation (local) 14881685 14883644 245419 243454 CM091758.1 scf7180002755046 98.88 True indel: indel (> 5bp) 14839752 14881625 285983 245488 CM091758.1 scf7180002755046 95.4 True local misassembly 14838298 14838814 287450 286934 CM091758.1 scf7180002755046 98.45 True local misassembly 14836379 14837151 289336 288564 CM091758.1 scf7180002755046 99.35 True indel: indel (> 5bp) 14835517 14836370 290190 289337 CM091758.1 scf7180002755046 99.77 True local misassembly 14833517 14834340 291014 290191 CM091758.1 scf7180002755046 99.27 True indel: indel (<= 5bp) 14832064 14833040 292469 291493 CM091758.1 scf7180002755046 99.08 True indel: indel (<= 5bp) 14830741 14832062 293791 292470 CM091758.1 scf7180002755046 99.32 True indel: indel (> 5bp) 14829129 14830733 295396 293792 CM091758.1 scf7180002755046 99.5 True indel: indel (<= 5bp) 14828481 14829125 296041 295397 CM091758.1 scf7180002755046 99.22 True fake: scaffold gap size wrong estimation (local) 14827811 14828437 296739 296113 CM091758.1 scf7180002755046 100.0 True indel: indel (> 5bp) 14770099 14827654 354063 296915 CM091758.1 scf7180002755046 98.29 True fake: scaffold gap size wrong estimation (local) 14767702 14770072 360881 358511 CM091758.1 scf7180002755046 99.54 True local misassembly 14765216 14766582 363212 361846 CM091758.1 scf7180002755046 99.85 True fake: scaffold gap size wrong estimation (local) 14762031 14762788 366099 365342 CM091758.1 scf7180002755046 98.28 True local misassembly 14760979 14761763 366884 366100 CM091758.1 scf7180002755046 99.75 True fake: scaffold gap size wrong estimation (local) 14746151 14746917 380880 380114 CM091758.1 scf7180002755046 98.31 True relocation, scaffold gap is present, inconsistency = -14776 14759589 14760254 382218 381553 CM091758.1 scf7180002755046 98.65 True local misassembly 14756956 14758254 384532 383234 CM091758.1 scf7180002755046 99.23 True indel: indel (<= 5bp) 14755537 14756471 385954 385020 CM091758.1 scf7180002755046 99.14 True local misassembly 14752958 14754946 388534 386546 CM091758.1 scf7180002755046 99.35 True indel: indel (<= 5bp) 14752034 14752957 389459 388536 CM091758.1 scf7180002755046 99.35 True indel: indel (<= 5bp) 14751097 14752033 390397 389461 CM091758.1 scf7180002755046 99.57 True local misassembly 14748326 14750248 393172 391250 CM091758.1 scf7180002755046 99.53 True indel: indel (<= 5bp) 14747141 14748235 394352 393258 CM091758.1 scf7180002755046 99.63 True indel: indel (<= 5bp) 14746086 14747140 395408 394354 CM091758.1 scf7180002755046 98.86 True indel: indel (<= 5bp) 14744741 14745698 396754 395797 CM091758.1 scf7180002755046 99.69 True fake: scaffold gap size wrong estimation (local) 14729755 14742241 411156 398654 CM091758.1 scf7180002755046 98.5 True indel: indel (> 5bp) 14727826 14729623 413091 411294 CM091758.1 scf7180002755046 99.05 True fake: scaffold gap size wrong estimation (local) 14656604 14725623 482525 415890 CM091758.1 scf7180002755046 95.56 True relocation, scaffold gap is present, inconsistency = 40836 14597580 14615747 500714 482546 CM091758.1 scf7180002755046 99.53 True relocation, scaffold gap is present, inconsistency = -59076 14651898 14656635 505411 500735 CM091758.1 scf7180002755046 98.0 True fake: scaffold gap size wrong estimation (local) 14650870 14651872 511235 510233 CM091758.1 scf7180002755046 99.7 True local misassembly 14637544 14649631 523661 511891 CM091758.1 scf7180002755046 95.7 True fake: not a misassembly (possible transposable element) 14594597 14597570 526770 523793 CM091758.1 scf7180002755046 99.36 True fake: not a misassembly (possible transposable element) 14635256 14636751 528266 526771 CM091758.1 scf7180002755046 99.56 True indel: indel (> 5bp) 14634087 14634824 529449 528712 CM091758.1 scf7180002755046 98.92 True local misassembly 14629951 14632968 533118 530101 CM091758.1 scf7180002755046 99.87 True local misassembly 14626916 14627966 534596 533546 CM091758.1 scf7180002755046 99.62 True indel: indel (<= 5bp) 14625862 14626896 535652 534618 CM091758.1 scf7180002755046 99.52 True relocation, scaffold gap is present, inconsistency = 28675 14590480 14594630 542358 538209 CM091758.1 scf7180002755046 99.42 True fake: not a misassembly (possible transposable element) 14636818 14637373 543418 542864 CM091758.1 scf7180002755046 98.92 True fake: not a misassembly (possible transposable element) 14578804 14590452 558530 546849 CM091758.1 scf7180002755046 98.87 True fake: scaffold gap size wrong estimation (local) 14575416 14578300 568191 565299 CM091758.1 scf7180002755046 99.34 True indel: indel (> 5bp) 14556358 14575223 587288 568435 CM091758.1 scf7180002755046 99.2 True relocation, scaffold gap is present, inconsistency = -13920 14551103 14555868 606470 601698 CM091758.1 scf7180002755046 99.5 True fake: scaffold gap size wrong estimation (local) 14549734 14550749 607900 606885 CM091758.1 scf7180002755046 99.41 True indel: indel (> 5bp) 14548359 14549707 609282 607934 CM091758.1 scf7180002755046 99.04 True local misassembly 14546473 14547116 611192 610549 CM091758.1 scf7180002755046 99.53 True indel: indel (<= 5bp) 14545869 14546471 611795 611193 CM091758.1 scf7180002755046 99.83 True indel: indel (<= 5bp) 14544748 14545866 612914 611796 CM091758.1 scf7180002755046 99.91 True indel: indel (<= 5bp) 14542168 14544582 615495 613081 CM091758.1 scf7180002755046 99.34 True local misassembly 14538692 14539828 618423 617287 CM091758.1 scf7180002755046 99.38 True fake: scaffold gap size wrong estimation (local) 14537193 14538248 619933 618878 CM091758.1 scf7180002755046 99.34 True local misassembly 14535622 14536606 621503 620519 CM091758.1 scf7180002755046 97.97 True local misassembly 14533066 14535033 623471 621504 CM091758.1 scf7180002755046 98.58 True indel: indel (> 5bp) 14532083 14532962 624463 623584 CM091758.1 scf7180002755046 100.0 True indel: indel (<= 5bp) 14528738 14531867 627810 624681 CM091758.1 scf7180002755046 99.46 True fake: scaffold gap size wrong estimation (local) 14527119 14528348 635289 634060 CM091758.1 scf7180002755046 99.92 True fake: scaffold gap size wrong estimation (local) 14525372 14526957 637035 635450 CM091758.1 scf7180002755046 99.87 True indel: indel (<= 5bp) 14523235 14525214 639169 637190 CM091758.1 scf7180002755046 99.6 True local misassembly 14520555 14522378 641371 639548 CM091758.1 scf7180002755046 99.12 True indel: indel (> 5bp) 14519589 14520099 642306 641796 CM091758.1 scf7180002755046 100.0 True fake: scaffold gap size wrong estimation (local) 14505264 14519459 656664 642412 CM091758.1 scf7180002755046 98.45 True fake: scaffold gap size wrong estimation (local) 14500245 14504409 660920 656754 CM091758.1 scf7180002755046 98.8 True fake: scaffold gap size wrong estimation (local) 14481913 14499948 682843 664776 CM091758.1 scf7180002755046 98.96 True indel: indel (> 5bp) 14480551 14481718 684160 682989 CM091758.1 scf7180002755046 98.72 True fake: scaffold gap size wrong estimation (local) 14477642 14478279 687050 686413 CM091758.1 scf7180002755046 99.22 True indel: indel (<= 5bp) 14475660 14477369 689034 687325 CM091758.1 scf7180002755046 99.53 True local misassembly 14474407 14475050 690283 689640 CM091758.1 scf7180002755046 99.69 True local misassembly 14471146 14473659 692992 690479 CM091758.1 scf7180002755046 99.12 True fake: not a misassembly (possible transposable element) 3808156 3812742 697735 693137 CM091759.1 scf7180002755046 99.39 True fake: not a misassembly (possible transposable element) 14467210 14470424 700991 697780 CM091758.1 scf7180002755046 99.25 True translocation, scaffold gap is present 3797419 3808156 713705 702986 CM091759.1 scf7180002755046 98.9 True translocation, scaffold gap is present 14455420 14466551 724907 713775 CM091758.1 scf7180002755046 99.18 True relocation, scaffold gap is present, inconsistency = -10289 14400139 14454931 790365 735685 CM091758.1 scf7180002755046 98.99 True relocation, scaffold gap is present, inconsistency = -29598 14378657 14399771 841467 820331 CM091758.1 scf7180002755046 99.47 True fake: scaffold gap size wrong estimation (extensive) 14373249 14378694 855560 850139 CM091758.1 scf7180002755046 98.88 True translocation, scaffold gap is present 10730216 10748464 857806 876068 CM091764.1 scf7180002755046 99.54 True relocation, scaffold gap is present, inconsistency = -15170 10748486 10788276 891260 930822 CM091764.1 scf7180002755046 98.58 True relocation, scaffold gap is present, inconsistency = -33918 10788317 10829782 964781 1006261 CM091764.1 scf7180002755046 99.47 True relocation, scaffold gap is present, inconsistency = -22868 10830071 10905258 1029418 1104599 CM091764.1 scf7180002755046 99.42 True relocation, scaffold gap is present, inconsistency = -70104 10861765 10862331 1131210 1131835 CM091764.1 scf7180002755046 97.53 True fake: scaffold gap size wrong estimation (local) 10905267 10929802 1174039 1198603 CM091764.1 scf7180002755046 99.34 True fake: scaffold gap size wrong estimation (local) 10929645 10961360 1202093 1233676 CM091764.1 scf7180002755046 99.0 True fake: scaffold gap size wrong estimation (local) 10961891 10962740 1238578 1239427 CM091764.1 scf7180002755046 99.41 True indel: indel (<= 5bp) 10962742 10964112 1239428 1240798 CM091764.1 scf7180002755046 99.93 True indel: indel (<= 5bp) 10964117 10966320 1240804 1243007 CM091764.1 scf7180002755046 99.46 True indel: indel (<= 5bp) 10966321 10968511 1243009 1245199 CM091764.1 scf7180002755046 99.63 True local misassembly 10969134 10970783 1245825 1247474 CM091764.1 scf7180002755046 100.0 True translocation, scaffold gap is present 1043827 1052512 1247720 1258517 CM091765.1 scf7180002755046 98.27 True fake: not a misassembly (possible transposable element) 10971721 10977005 1260224 1265515 CM091764.1 scf7180002755046 99.53 True fake: not a misassembly (possible transposable element) 1053510 1056420 1266032 1268950 CM091765.1 scf7180002755046 99.01 True fake: scaffold gap size wrong estimation (local) 1056450 1060028 1271999 1275551 CM091765.1 scf7180002755046 98.94 True fake: not a misassembly (possible transposable element) 10977020 10980542 1276427 1279951 CM091764.1 scf7180002755046 99.63 True fake: not a misassembly (possible transposable element) 1060394 1061157 1281756 1282519 CM091765.1 scf7180002755046 99.87 True fake: scaffold gap size wrong estimation (local) 1062640 1064431 1283316 1285109 CM091765.1 scf7180002755046 99.61 True fake: not a misassembly (possible transposable element) 10980768 10986456 1285428 1291109 CM091764.1 scf7180002755046 99.54 True fake: not a misassembly (possible transposable element) 1064471 1070389 1292065 1297979 CM091765.1 scf7180002755046 99.63 True fake: scaffold gap size wrong estimation (local) 1070440 1111469 1301798 1342908 CM091765.1 scf7180002755046 99.35 True fake: scaffold gap size wrong estimation (local) 1111591 1174895 1343212 1406234 CM091765.1 scf7180002755046 98.86 True indel: indel (> 5bp) 1174947 1348083 1406293 1576401 CM091765.1 scf7180002755046 97.66 True indel: indel (> 5bp) 1348131 1357229 1576463 1585579 CM091765.1 scf7180002755046 98.91 True fake: scaffold gap size wrong estimation (local) 1357579 1517413 1592745 1752386 CM091765.1 scf7180002755046 99.38 True fake: scaffold gap size wrong estimation (local) 1517417 1521914 1753518 1757998 CM091765.1 scf7180002755046 99.16 True fake: scaffold gap size wrong estimation (local) 1522249 1533791 1758308 1769865 CM091765.1 scf7180002755046 99.14 True fake: scaffold gap size wrong estimation (local) 1534108 1547038 1770461 1783181 CM091765.1 scf7180002755046 96.33 True fake: scaffold gap size wrong estimation (local) 1547063 1571622 1784284 1808734 CM091765.1 scf7180002755046 98.77 True fake: scaffold gap size wrong estimation (local) 1571716 1577648 1808838 1814642 CM091765.1 scf7180002755046 97.2 True fake: scaffold gap size wrong estimation (local) 1577659 1587114 1819096 1828618 CM091765.1 scf7180002755046 99.26 True CONTIG scf7180002755046 1828618 misassembled CONTIG scf7180002755066 309 unaligned CONTIG scf7180002755073 203 unaligned CONTIG scf7180002755074 240 unaligned CONTIG scf7180002755076 326 unaligned